Query psy3067
Match_columns 141
No_of_seqs 110 out of 1045
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:51:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dha_A FLJ20171 protein; RRM d 99.8 5.4E-22 1.9E-26 144.1 4.2 82 26-108 25-109 (123)
2 2dnn_A RNA-binding protein 12; 99.8 1.5E-21 5.3E-26 138.8 5.9 80 25-107 17-96 (109)
3 1wg5_A Heterogeneous nuclear r 99.8 2.6E-21 9E-26 134.5 5.9 82 26-108 17-98 (104)
4 2hgm_A HNRPF protein, heteroge 99.8 8.1E-22 2.8E-26 144.1 3.3 81 26-107 44-124 (126)
5 1wez_A HnRNP H', FTP-3, hetero 99.8 3.8E-21 1.3E-25 134.2 5.3 77 26-105 17-93 (102)
6 2db1_A Heterogeneous nuclear r 99.8 2.5E-20 8.4E-25 132.8 6.4 80 26-107 19-101 (118)
7 2hgl_A HNRPF protein, heteroge 99.8 3.3E-20 1.1E-24 136.7 6.0 80 26-107 46-128 (136)
8 2lmi_A GRSF-1, G-rich sequence 99.8 1.8E-20 6.2E-25 130.9 3.2 80 26-107 13-95 (107)
9 2cpy_A RNA-binding protein 12; 99.8 7.1E-20 2.4E-24 129.1 5.2 81 26-107 17-97 (114)
10 2hgn_A Heterogeneous nuclear r 99.8 4E-20 1.4E-24 136.9 2.5 78 26-106 48-125 (139)
11 2dgw_A Probable RNA-binding pr 99.8 6.9E-19 2.4E-23 118.6 6.5 75 26-103 12-86 (91)
12 1wel_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 126.7 5.4 79 26-105 27-105 (124)
13 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-18 5E-23 120.4 6.9 77 26-103 21-98 (99)
14 2lxi_A RNA-binding protein 10; 99.7 2.6E-19 9E-24 122.2 2.5 77 27-104 4-83 (91)
15 2lkz_A RNA-binding protein 5; 99.7 4.3E-19 1.5E-23 123.1 3.3 81 22-102 7-93 (95)
16 3p5t_L Cleavage and polyadenyl 99.7 2.5E-18 8.6E-23 116.2 5.4 77 26-103 3-82 (90)
17 3s7r_A Heterogeneous nuclear r 99.7 6.3E-18 2.2E-22 112.8 6.3 75 26-101 13-87 (87)
18 2mss_A Protein (musashi1); RNA 99.7 2.2E-18 7.5E-23 112.1 4.0 74 27-101 2-75 (75)
19 2dng_A Eukaryotic translation 99.7 7E-18 2.4E-22 116.2 6.6 77 26-104 17-93 (103)
20 2ek1_A RNA-binding protein 12; 99.7 7E-18 2.4E-22 114.0 6.3 76 26-102 17-93 (95)
21 3md1_A Nuclear and cytoplasmic 99.7 1.2E-17 4.1E-22 110.1 7.2 77 27-104 4-81 (83)
22 3s8s_A Histone-lysine N-methyl 99.7 1.6E-17 5.5E-22 117.4 8.2 77 27-104 9-86 (110)
23 4f25_A Polyadenylate-binding p 99.7 7.2E-18 2.4E-22 119.1 6.3 94 27-123 8-112 (115)
24 2dgs_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 113.8 7.0 79 26-105 12-90 (99)
25 3ucg_A Polyadenylate-binding p 99.7 9.6E-18 3.3E-22 111.9 5.6 77 26-103 8-84 (89)
26 1wi8_A EIF-4B, eukaryotic tran 99.7 1.5E-17 5.1E-22 114.7 5.8 77 26-104 17-94 (104)
27 2la6_A RNA-binding protein FUS 99.7 3.4E-17 1.2E-21 112.0 7.4 76 26-102 15-99 (99)
28 1iqt_A AUF1, heterogeneous nuc 99.7 3.4E-18 1.2E-22 111.0 2.2 74 27-101 2-75 (75)
29 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 112.6 6.0 77 26-103 17-94 (98)
30 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.2E-22 116.9 5.1 76 26-103 13-88 (103)
31 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.2E-17 1.1E-21 108.9 6.8 76 27-103 9-85 (87)
32 1x5t_A Splicing factor 3B subu 99.7 3.5E-17 1.2E-21 110.7 6.6 78 27-105 8-87 (96)
33 1whw_A Hypothetical protein ri 99.7 4.8E-17 1.7E-21 110.8 6.8 79 26-105 10-89 (99)
34 2dh8_A DAZ-associated protein 99.7 1.7E-17 5.8E-22 114.4 4.4 79 26-105 18-96 (105)
35 2cq0_A Eukaryotic translation 99.7 7.1E-17 2.4E-21 110.9 7.5 78 26-104 17-95 (103)
36 1l3k_A Heterogeneous nuclear r 99.7 1.7E-17 6E-22 123.4 4.6 102 24-126 13-122 (196)
37 1x4b_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 114.2 6.3 79 25-104 28-106 (116)
38 2cqc_A Arginine/serine-rich sp 99.7 6.8E-17 2.3E-21 108.9 6.7 76 26-102 17-93 (95)
39 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-17 5.2E-22 114.5 3.6 76 26-103 21-97 (100)
40 2cqg_A TDP-43, TAR DNA-binding 99.7 7.9E-17 2.7E-21 110.7 7.1 78 26-105 17-94 (103)
41 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.6E-17 9E-22 107.0 4.4 74 27-101 3-76 (77)
42 2dgo_A Cytotoxic granule-assoc 99.7 1.1E-16 3.8E-21 111.9 7.9 80 26-106 17-97 (115)
43 1x5u_A Splicing factor 3B subu 99.7 5.9E-17 2E-21 111.5 6.3 80 26-106 17-97 (105)
44 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.9E-17 1.7E-21 107.6 5.5 75 26-101 9-84 (85)
45 1l3k_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 119.5 7.7 101 5-106 75-185 (196)
46 2dnz_A Probable RNA-binding pr 99.7 1E-16 3.4E-21 108.3 7.1 76 27-103 8-84 (95)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.1E-17 1.7E-21 111.3 5.5 79 26-105 14-93 (102)
48 3ns6_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 114.4 3.3 80 26-106 8-95 (100)
49 2cq4_A RNA binding motif prote 99.7 3.5E-17 1.2E-21 114.5 4.7 80 25-105 26-105 (114)
50 2do4_A Squamous cell carcinoma 99.7 1.2E-16 4.2E-21 109.2 7.2 76 26-103 19-95 (100)
51 2rs2_A Musashi-1, RNA-binding 99.7 7.6E-17 2.6E-21 113.0 6.3 77 26-103 27-103 (109)
52 2ywk_A Putative RNA-binding pr 99.7 7.4E-17 2.5E-21 108.9 6.0 75 26-102 18-93 (95)
53 3n9u_C Cleavage and polyadenyl 99.7 9E-17 3.1E-21 120.1 6.7 77 26-103 57-136 (156)
54 2x1f_A MRNA 3'-END-processing 99.7 9.1E-17 3.1E-21 109.3 6.2 78 27-105 5-83 (96)
55 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-16 3.6E-21 108.0 6.4 75 26-101 18-93 (94)
56 1x5s_A Cold-inducible RNA-bind 99.7 6.7E-17 2.3E-21 110.6 5.5 79 26-105 14-93 (102)
57 2dnm_A SRP46 splicing factor; 99.7 5.2E-17 1.8E-21 111.6 4.9 77 26-103 15-92 (103)
58 2cpe_A RNA-binding protein EWS 99.7 1E-16 3.4E-21 111.8 6.3 79 26-104 17-103 (113)
59 1x4h_A RNA-binding protein 28; 99.7 1.1E-16 3.9E-21 110.8 6.4 78 26-104 17-101 (111)
60 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-16 4.2E-21 111.8 6.6 78 26-104 27-105 (115)
61 1p27_B RNA-binding protein 8A; 99.7 1.6E-16 5.4E-21 109.5 6.7 76 27-103 26-102 (106)
62 3ulh_A THO complex subunit 4; 99.7 1.8E-16 6E-21 109.4 6.7 75 26-102 31-106 (107)
63 1p1t_A Cleavage stimulation fa 99.7 1.3E-16 4.6E-21 109.3 6.0 79 25-104 9-88 (104)
64 2jwn_A Embryonic polyadenylate 99.6 1.1E-16 3.7E-21 113.3 5.5 77 26-103 38-114 (124)
65 1fxl_A Paraneoplastic encephal 99.6 1E-16 3.4E-21 115.8 5.2 99 27-126 5-106 (167)
66 2jrs_A RNA-binding protein 39; 99.6 2.2E-16 7.7E-21 110.6 6.7 77 26-103 28-105 (108)
67 2cpf_A RNA binding motif prote 99.6 1.3E-16 4.4E-21 108.5 5.2 78 26-104 7-88 (98)
68 1oo0_B CG8781-PA, drosophila Y 99.6 1.7E-16 5.7E-21 110.2 5.6 77 26-103 28-105 (110)
69 2dnh_A Bruno-like 5, RNA bindi 99.6 4.7E-16 1.6E-20 106.9 7.7 77 26-104 17-97 (105)
70 2cqd_A RNA-binding region cont 99.6 2.1E-16 7.1E-21 110.9 6.0 78 26-104 19-96 (116)
71 4f02_A Polyadenylate-binding p 99.6 7E-17 2.4E-21 124.0 3.7 100 26-126 17-121 (213)
72 1b7f_A Protein (SXL-lethal pro 99.6 8.2E-17 2.8E-21 116.8 3.7 99 27-126 6-107 (168)
73 2cph_A RNA binding motif prote 99.6 2.8E-16 9.4E-21 108.2 6.0 78 26-104 17-97 (107)
74 2do0_A HnRNP M, heterogeneous 99.6 5.5E-16 1.9E-20 108.0 7.6 76 26-103 17-93 (114)
75 2fy1_A RNA-binding motif prote 99.6 3.5E-16 1.2E-20 110.9 6.6 78 26-105 9-87 (116)
76 2d9p_A Polyadenylate-binding p 99.6 6.2E-16 2.1E-20 106.1 7.6 77 26-105 17-94 (103)
77 2dgp_A Bruno-like 4, RNA bindi 99.6 1.9E-16 6.6E-21 109.0 5.0 78 26-104 15-96 (106)
78 2div_A TRNA selenocysteine ass 99.6 2.2E-16 7.5E-21 107.5 5.2 78 26-103 11-93 (99)
79 2dhg_A TRNA selenocysteine ass 99.6 1.9E-16 6.6E-21 108.7 4.9 76 26-103 11-89 (104)
80 1x4e_A RNA binding motif, sing 99.6 7.8E-17 2.7E-21 107.0 2.8 74 27-101 8-82 (85)
81 1fj7_A Nucleolin RBD1, protein 99.6 3E-17 1E-21 112.4 0.7 77 26-104 19-95 (101)
82 4a8x_A RNA-binding protein wit 99.6 1.9E-16 6.4E-21 105.2 4.5 76 27-103 7-84 (88)
83 2cjk_A Nuclear polyadenylated 99.6 1.8E-16 6E-21 115.2 4.7 96 7-103 66-165 (167)
84 1u6f_A Tcubp1, RNA-binding pro 99.6 3.5E-16 1.2E-20 112.7 5.9 78 26-104 44-122 (139)
85 2fc8_A NCL protein; structure 99.6 6.3E-16 2.2E-20 105.7 6.8 74 26-103 17-91 (102)
86 2khc_A Testis-specific RNP-typ 99.6 2.1E-16 7E-21 111.0 4.4 75 26-101 42-117 (118)
87 3md3_A Nuclear and cytoplasmic 99.6 1.6E-16 5.4E-21 114.6 3.8 98 27-126 3-105 (166)
88 2kxn_B Transformer-2 protein h 99.6 5E-16 1.7E-20 112.4 6.2 77 26-103 48-125 (129)
89 2cjk_A Nuclear polyadenylated 99.6 3.9E-17 1.3E-21 118.7 0.1 98 26-125 5-104 (167)
90 2g4b_A Splicing factor U2AF 65 99.6 2.3E-16 7.7E-21 115.2 4.0 98 4-102 70-172 (172)
91 2kn4_A Immunoglobulin G-bindin 99.6 3.2E-16 1.1E-20 114.9 4.8 77 26-103 72-149 (158)
92 2kt5_A RNA and export factor-b 99.6 9E-16 3.1E-20 108.9 7.0 77 26-104 37-114 (124)
93 3ex7_B RNA-binding protein 8A; 99.6 5.6E-16 1.9E-20 109.9 5.9 77 26-103 24-101 (126)
94 1h2v_Z 20 kDa nuclear CAP bind 99.6 8E-16 2.7E-20 113.1 6.8 77 26-103 41-118 (156)
95 2m2b_A RNA-binding protein 10; 99.6 1.7E-16 5.8E-21 114.2 3.0 78 26-104 25-108 (131)
96 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.6E-21 106.9 2.0 75 27-103 4-79 (90)
97 2cq3_A RNA-binding protein 9; 99.6 1.4E-15 4.8E-20 104.4 7.1 76 26-104 17-93 (103)
98 2dgv_A HnRNP M, heterogeneous 99.6 8.2E-16 2.8E-20 103.2 5.7 75 26-103 10-85 (92)
99 3q2s_C Cleavage and polyadenyl 99.6 4.6E-16 1.6E-20 122.6 5.2 77 26-103 70-149 (229)
100 2xs2_A Deleted in azoospermia- 99.6 2.4E-16 8.4E-21 108.0 3.1 75 26-103 11-85 (102)
101 3md3_A Nuclear and cytoplasmic 99.6 7.8E-16 2.7E-20 111.0 5.9 97 5-102 62-165 (166)
102 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.1E-16 1.7E-20 111.1 4.8 75 26-101 65-140 (140)
103 2fc9_A NCL protein; structure 99.6 1E-15 3.5E-20 104.7 5.9 74 26-104 17-91 (101)
104 2qfj_A FBP-interacting repress 99.6 1.5E-15 5.2E-20 114.4 6.3 98 5-103 91-204 (216)
105 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.1E-15 7.2E-20 103.5 5.8 76 26-104 17-93 (103)
106 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4.2E-20 111.1 4.7 99 27-126 6-113 (175)
107 2yh0_A Splicing factor U2AF 65 99.6 7.2E-16 2.5E-20 114.8 3.3 101 4-105 70-195 (198)
108 2lcw_A RNA-binding protein FUS 99.3 1.8E-16 6.3E-21 111.3 0.0 81 24-105 7-96 (116)
109 2lea_A Serine/arginine-rich sp 99.6 1.3E-15 4.4E-20 110.9 4.3 77 26-103 49-126 (135)
110 2dis_A Unnamed protein product 99.6 1.3E-15 4.5E-20 105.3 4.0 77 26-103 10-91 (109)
111 2cpi_A CCR4-NOT transcription 99.6 2.4E-15 8.3E-20 105.3 5.2 77 26-103 17-100 (111)
112 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4E-15 1.4E-19 110.8 6.5 76 27-103 75-151 (165)
113 2err_A Ataxin-2-binding protei 99.6 3.7E-15 1.3E-19 104.2 5.7 75 26-103 31-106 (109)
114 2dgx_A KIAA0430 protein; RRM d 99.6 3.2E-15 1.1E-19 102.0 5.0 74 26-103 11-89 (96)
115 2krb_A Eukaryotic translation 99.6 9.5E-16 3.2E-20 101.4 2.2 69 27-98 4-80 (81)
116 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.3E-20 105.8 2.9 78 26-106 17-102 (105)
117 1x4a_A Splicing factor, argini 99.5 4.8E-15 1.6E-19 102.8 5.8 74 26-103 24-98 (109)
118 2voo_A Lupus LA protein; RNA-b 99.5 5.8E-15 2E-19 113.4 6.7 75 26-102 111-185 (193)
119 3lqv_A PRE-mRNA branch site pr 99.5 6.2E-15 2.1E-19 102.9 6.3 75 26-104 10-85 (115)
120 1x5o_A RNA binding motif, sing 99.5 1E-14 3.5E-19 101.7 7.3 75 26-102 27-110 (114)
121 4f02_A Polyadenylate-binding p 99.5 1E-14 3.5E-19 111.9 7.1 96 5-103 78-180 (213)
122 1fje_B Nucleolin RBD12, protei 99.5 3.4E-16 1.2E-20 115.0 -1.3 99 26-126 15-117 (175)
123 2wbr_A GW182, gawky, LD47780P; 99.5 2E-15 6.7E-20 104.9 2.6 74 26-106 9-83 (89)
124 2qfj_A FBP-interacting repress 99.5 7.6E-15 2.6E-19 110.6 5.9 100 26-126 30-143 (216)
125 1fjc_A Nucleolin RBD2, protein 99.5 4.3E-15 1.5E-19 100.5 4.0 72 26-103 18-90 (96)
126 3smz_A Protein raver-1, ribonu 99.5 1.3E-14 4.4E-19 114.5 7.3 118 5-125 78-202 (284)
127 2jvr_A Nucleolar protein 3; RN 99.5 4.1E-15 1.4E-19 106.0 3.8 73 26-103 30-104 (111)
128 1b7f_A Protein (SXL-lethal pro 99.5 1E-14 3.4E-19 105.7 5.9 96 5-101 66-168 (168)
129 2cpx_A Hypothetical protein FL 99.5 2.2E-15 7.4E-20 105.1 2.1 79 26-105 27-106 (115)
130 2dnl_A Cytoplasmic polyadenyla 99.5 9.3E-15 3.2E-19 102.7 5.3 72 26-100 10-84 (114)
131 2f3j_A RNA and export factor b 99.5 1.2E-14 4.1E-19 110.4 6.3 78 26-105 90-168 (177)
132 1fxl_A Paraneoplastic encephal 99.5 1.1E-14 3.9E-19 104.9 5.5 94 5-99 65-165 (167)
133 2e5g_A U6 snRNA-specific termi 99.5 1.4E-14 4.9E-19 98.1 4.9 72 26-103 10-81 (94)
134 2e5j_A Methenyltetrahydrofolat 99.5 2E-14 6.7E-19 97.9 5.2 72 26-103 21-93 (97)
135 3smz_A Protein raver-1, ribonu 99.5 2.1E-14 7.3E-19 113.3 6.1 99 5-105 158-265 (284)
136 1x4c_A Splicing factor, argini 99.5 1.7E-14 5.9E-19 100.3 4.8 70 26-103 17-92 (108)
137 3nmr_A Cugbp ELAV-like family 99.5 3.9E-14 1.3E-18 103.0 6.8 74 26-101 97-174 (175)
138 2hvz_A Splicing factor, argini 99.5 1.9E-14 6.5E-19 98.3 4.5 73 27-105 3-76 (101)
139 2dgu_A Heterogeneous nuclear r 99.5 6.3E-14 2.1E-18 96.4 7.1 70 26-104 13-83 (103)
140 2j8a_A Histone-lysine N-methyl 99.5 1.7E-14 5.9E-19 107.0 4.5 76 26-102 4-94 (136)
141 2ad9_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 102.2 6.5 76 26-108 33-111 (119)
142 1wg1_A KIAA1579 protein, homol 99.5 4.1E-14 1.4E-18 94.9 5.8 69 27-103 8-77 (88)
143 2cq1_A PTB-like protein L; RRM 99.5 4.8E-14 1.6E-18 98.6 6.2 75 26-107 17-94 (101)
144 1fje_B Nucleolin RBD12, protei 99.5 2.5E-14 8.5E-19 104.9 4.8 93 5-103 74-173 (175)
145 1sjq_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 102.8 3.4 74 26-106 18-94 (105)
146 2e44_A Insulin-like growth fac 99.5 2.6E-14 9E-19 96.6 3.5 74 26-104 17-92 (96)
147 1nu4_A U1A RNA binding domain; 99.5 2.5E-14 8.5E-19 96.7 3.3 74 26-103 10-88 (97)
148 2dnq_A RNA-binding protein 4B; 99.5 9E-14 3.1E-18 93.3 5.9 70 26-104 10-80 (90)
149 2ghp_A U4/U6 snRNA-associated 99.5 2.4E-14 8.1E-19 113.5 3.4 97 5-103 180-290 (292)
150 3pgw_S U1-70K; protein-RNA com 99.5 6.2E-14 2.1E-18 119.9 6.3 77 26-103 104-181 (437)
151 2g4b_A Splicing factor U2AF 65 99.5 5.1E-15 1.7E-19 107.9 -0.5 100 26-126 6-112 (172)
152 3egn_A RNA-binding protein 40; 99.4 7.5E-14 2.6E-18 101.1 5.4 75 27-103 48-129 (143)
153 1wex_A Hypothetical protein (r 99.4 8.9E-14 3E-18 97.6 5.5 74 26-106 17-93 (104)
154 1x4d_A Matrin 3; structural ge 99.4 6.8E-14 2.3E-18 98.4 4.8 71 26-103 17-91 (102)
155 2cpj_A Non-POU domain-containi 99.4 1.1E-13 3.8E-18 94.3 5.6 71 26-103 17-88 (99)
156 2hzc_A Splicing factor U2AF 65 99.4 4.3E-14 1.5E-18 93.6 3.3 68 26-100 8-86 (87)
157 1why_A Hypothetical protein ri 99.4 1.3E-13 4.4E-18 93.7 5.7 71 26-103 19-92 (97)
158 3r27_A HnRNP L, heterogeneous 99.4 1.2E-13 4.2E-18 97.3 5.7 95 1-105 1-98 (100)
159 3beg_B Splicing factor, argini 99.4 6.9E-14 2.4E-18 98.7 4.0 71 25-103 17-93 (115)
160 2dnp_A RNA-binding protein 14; 99.4 1.5E-13 5.1E-18 92.2 5.1 71 26-105 11-82 (90)
161 2a3j_A U1 small nuclear ribonu 99.4 1.4E-13 4.6E-18 100.0 5.3 74 26-103 31-109 (127)
162 2la4_A Nuclear and cytoplasmic 99.4 9E-14 3.1E-18 94.9 4.1 69 27-102 30-99 (101)
163 3d2w_A TAR DNA-binding protein 99.4 7.6E-14 2.6E-18 94.7 3.6 71 26-103 13-83 (89)
164 2ytc_A PRE-mRNA-splicing facto 99.4 1.7E-13 5.7E-18 90.6 5.1 69 26-101 14-84 (85)
165 2cqh_A IGF-II mRNA-binding pro 99.4 1.5E-13 5.2E-18 92.5 4.7 71 26-104 10-83 (93)
166 1x4g_A Nucleolysin TIAR; struc 99.4 1.5E-13 5.3E-18 95.3 4.8 70 27-103 28-98 (109)
167 3sde_A Paraspeckle component 1 99.4 1.8E-13 6.2E-18 108.0 5.6 96 5-104 79-179 (261)
168 2jvo_A Nucleolar protein 3; nu 99.4 2.6E-13 8.7E-18 95.0 5.7 69 26-103 33-102 (108)
169 2i2y_A Fusion protein consists 99.4 1.1E-13 3.8E-18 101.0 3.8 72 26-103 75-147 (150)
170 2dgt_A RNA-binding protein 30; 99.4 3.5E-13 1.2E-17 90.7 5.9 70 26-104 12-82 (92)
171 2cpd_A Apobec-1 stimulating pr 99.4 4.2E-13 1.4E-17 91.4 6.1 70 26-104 17-89 (99)
172 2xnq_A Nuclear polyadenylated 99.4 3.6E-13 1.2E-17 92.3 5.6 69 26-103 24-94 (97)
173 1whx_A Hypothetical protein ri 99.4 3.6E-13 1.2E-17 94.6 5.5 71 26-103 12-83 (111)
174 2kvi_A Nuclear polyadenylated 99.4 3.5E-13 1.2E-17 91.7 4.9 69 26-103 12-82 (96)
175 1x4f_A Matrin 3; structural ge 99.4 4.1E-13 1.4E-17 96.2 5.4 71 26-103 27-101 (112)
176 1wf0_A TDP-43, TAR DNA-binding 99.4 1.4E-13 4.8E-18 92.0 2.6 71 27-104 8-78 (88)
177 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.3E-18 96.6 2.4 71 29-101 20-103 (104)
178 2ghp_A U4/U6 snRNA-associated 99.4 1.9E-13 6.5E-18 108.2 3.5 117 5-126 101-229 (292)
179 1wf1_A RNA-binding protein RAL 99.4 3.4E-13 1.2E-17 93.6 4.4 69 26-103 29-99 (110)
180 2yh0_A Splicing factor U2AF 65 99.4 5.6E-14 1.9E-18 104.5 0.3 75 27-103 7-87 (198)
181 3pgw_A U1-A; protein-RNA compl 99.3 2.8E-12 9.5E-17 101.0 6.5 74 26-103 11-89 (282)
182 2pe8_A Splicing factor 45; RRM 99.3 8.8E-12 3E-16 87.5 7.9 71 36-107 25-97 (105)
183 1qm9_A Polypyrimidine tract-bi 99.3 1.7E-12 5.9E-17 97.1 4.2 71 27-103 6-78 (198)
184 2adc_A Polypyrimidine tract-bi 99.3 2.4E-12 8.3E-17 99.6 4.7 72 26-103 36-109 (229)
185 3tyt_A Heterogeneous nuclear r 99.3 3.7E-12 1.3E-16 98.3 5.7 71 27-103 7-79 (205)
186 1sjr_A Polypyrimidine tract-bi 99.3 5.8E-12 2E-16 95.9 5.6 74 26-104 48-124 (164)
187 3sde_A Paraspeckle component 1 99.2 5.7E-12 2E-16 99.4 5.4 89 26-125 24-113 (261)
188 1x5p_A Negative elongation fac 99.2 7.5E-12 2.6E-16 85.0 5.2 68 27-103 18-86 (97)
189 2e5i_A Heterogeneous nuclear r 99.2 1.5E-11 5E-16 89.4 6.8 72 26-104 27-102 (124)
190 3zzy_A Polypyrimidine tract-bi 99.2 1.6E-11 5.5E-16 90.1 6.7 73 26-104 30-106 (130)
191 2cq2_A Hypothetical protein LO 99.2 2.8E-12 9.6E-17 92.2 2.2 70 26-102 27-104 (114)
192 2diu_A KIAA0430 protein; struc 99.2 1.3E-11 4.5E-16 86.7 5.0 65 27-103 12-83 (96)
193 3tyt_A Heterogeneous nuclear r 99.2 6.9E-12 2.4E-16 96.8 3.5 66 27-94 126-193 (205)
194 3v4m_A Splicing factor U2AF 65 99.2 1.3E-11 4.5E-16 86.5 3.8 74 34-108 25-101 (105)
195 2bz2_A Negative elongation fac 99.2 3.6E-11 1.2E-15 85.9 6.1 68 27-103 42-110 (121)
196 3pgw_A U1-A; protein-RNA compl 99.2 3.4E-11 1.1E-15 94.8 6.0 70 27-102 210-281 (282)
197 1qm9_A Polypyrimidine tract-bi 99.2 2.1E-11 7.2E-16 91.2 4.4 71 27-103 123-196 (198)
198 3ue2_A Poly(U)-binding-splicin 99.1 9.9E-11 3.4E-15 84.0 6.7 70 37-107 38-112 (118)
199 2adc_A Polypyrimidine tract-bi 99.1 6.8E-11 2.3E-15 91.4 5.7 71 27-103 154-227 (229)
200 2dit_A HIV TAT specific factor 99.1 1E-10 3.5E-15 81.8 5.7 63 37-104 39-102 (112)
201 2d9o_A DNAJ (HSP40) homolog, s 99.0 5E-10 1.7E-14 78.3 7.2 63 34-103 27-89 (100)
202 3u1l_A PRE-mRNA-splicing facto 98.9 4.5E-10 1.5E-14 89.9 4.2 71 26-103 136-228 (240)
203 3s6e_A RNA-binding protein 39; 98.9 1.4E-09 4.9E-14 77.5 6.1 66 37-107 30-96 (114)
204 3dxb_A Thioredoxin N-terminall 98.7 3.3E-08 1.1E-12 75.8 7.9 71 36-107 141-216 (222)
205 3tht_A Alkylated DNA repair pr 98.7 1.1E-08 3.8E-13 85.6 4.9 58 27-91 21-81 (345)
206 1owx_A Lupus LA protein, SS-B, 98.5 2.1E-07 7E-12 67.5 5.2 69 28-103 22-95 (121)
207 2dnr_A Synaptojanin-1; RRM dom 98.4 4.6E-07 1.6E-11 62.9 5.2 56 39-103 30-85 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.2 1.3E-06 4.5E-11 61.0 3.9 55 39-102 39-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 97.5 0.00029 9.9E-09 50.7 6.9 74 21-102 5-98 (117)
210 2kn4_A Immunoglobulin G-bindin 97.1 0.00021 7.1E-09 51.4 2.8 43 55-99 3-46 (158)
211 1wwh_A Nucleoporin 35, nucleop 96.4 0.014 4.7E-07 42.0 7.4 64 31-102 31-95 (119)
212 2dhx_A Poly (ADP-ribose) polym 96.2 0.01 3.5E-07 41.8 5.7 68 27-103 11-83 (104)
213 1whv_A Poly(A)-specific ribonu 95.8 0.02 6.8E-07 40.1 5.7 47 31-86 22-68 (100)
214 2i2y_A Fusion protein consists 95.7 0.0047 1.6E-07 44.0 2.1 40 63-103 9-50 (150)
215 3p3d_A Nucleoporin 53; structu 95.1 0.014 4.7E-07 42.8 3.0 71 31-103 14-98 (132)
216 3ctr_A Poly(A)-specific ribonu 94.8 0.021 7.1E-07 40.1 3.1 47 31-86 12-58 (101)
217 1uw4_A UPF3X; nonsense mediate 87.8 0.54 1.8E-05 31.9 3.7 64 26-90 3-69 (91)
218 2db1_A Heterogeneous nuclear r 80.3 1.4 4.8E-05 29.9 3.2 31 4-34 80-110 (118)
219 2l08_A Regulator of nonsense t 76.9 1.3 4.6E-05 30.4 2.2 59 26-89 11-76 (97)
220 2lmi_A GRSF-1, G-rich sequence 75.3 1.6 5.5E-05 28.9 2.2 29 4-32 74-102 (107)
221 3d45_A Poly(A)-specific ribonu 73.9 4.8 0.00016 34.7 5.4 47 31-86 446-492 (507)
222 3pq1_A Poly(A) RNA polymerase; 73.3 1.9 6.3E-05 37.2 2.7 50 32-87 60-109 (464)
223 4e8u_A Putative uncharacterize 73.2 3.4 0.00012 31.2 3.8 48 37-88 34-84 (172)
224 2dnn_A RNA-binding protein 12; 70.1 2.7 9.2E-05 28.5 2.4 28 4-33 75-102 (109)
225 1wey_A Calcipressin 1; structu 54.8 6.5 0.00022 27.3 2.1 58 39-103 25-83 (104)
226 1wel_A RNA-binding protein 12; 42.2 20 0.0007 23.9 3.0 24 4-27 86-109 (124)
227 2v94_A RPS24, 30S ribosomal pr 39.7 35 0.0012 23.6 3.9 48 34-82 37-88 (107)
228 2kvo_A Photosystem II reaction 34.5 23 0.00077 25.2 2.3 38 42-82 4-43 (120)
229 1xn9_A 30S ribosomal protein S 34.5 34 0.0011 23.4 3.1 53 34-87 28-84 (101)
230 1ywx_A 30S ribosomal protein S 34.2 34 0.0011 23.5 3.1 48 34-82 28-79 (102)
231 3eyr_A Uncharacterized lipopro 33.7 15 0.00051 27.6 1.3 36 1-36 1-36 (178)
232 2g0c_A ATP-dependent RNA helic 33.0 74 0.0025 19.4 4.4 59 35-101 12-74 (76)
233 3d53_A Inorganic pyrophosphata 28.4 59 0.002 24.2 3.9 38 37-86 131-168 (173)
234 3u5c_Y RP50, 40S ribosomal pro 27.7 87 0.003 22.5 4.5 47 34-82 33-84 (135)
235 2xzm_P RPS24E; ribosome, trans 27.0 91 0.0031 22.8 4.5 48 34-82 31-82 (149)
236 2g1d_A 30S ribosomal protein S 25.7 34 0.0012 23.2 1.9 47 34-82 29-80 (98)
237 1qez_A Ppase, S-ppase, protein 23.8 81 0.0028 23.4 3.9 38 37-86 127-164 (173)
238 2l2l_B Methyl-CPG-binding doma 23.5 42 0.0015 18.9 1.7 11 33-43 4-14 (36)
239 3ia1_A THIO-disulfide isomeras 23.4 1.6E+02 0.0053 19.2 5.1 32 55-88 112-143 (154)
No 1
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.4e-22 Score=144.09 Aligned_cols=82 Identities=30% Similarity=0.424 Sum_probs=74.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCccc---ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIIS---NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~---~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.|+++||||++|++||++||+.++.|. .+|+|+.| .+|+++|+|||+|.++++|++||++|++.|++|+|+|.+++
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence 367789999999999999999997541 47999999 79999999999999999999999999999999999999998
Q ss_pred hhhccc
Q psy3067 103 YTVQHR 108 (141)
Q Consensus 103 ~~~~~~ 108 (141)
..++..
T Consensus 104 ~~e~~~ 109 (123)
T 2dha_A 104 AAEVQQ 109 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 2
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=138.78 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=73.4
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
..++++||||++|++||++||+.|+|. +|+|+.| .+|+++|+|||+|.++++|++||++|++.|++|+|+|.+++..
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~~v~--~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGLRVD--AVHLLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTSCCC--EEEECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccCCee--EEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 368899999999999999999999765 5999999 6799999999999999999999999999999999999999875
Q ss_pred hcc
Q psy3067 105 VQH 107 (141)
Q Consensus 105 ~~~ 107 (141)
+..
T Consensus 94 ~~~ 96 (109)
T 2dnn_A 94 QWV 96 (109)
T ss_dssp HHH
T ss_pred chh
Confidence 543
No 3
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-21 Score=134.55 Aligned_cols=82 Identities=49% Similarity=0.702 Sum_probs=75.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++||||++|++||++||+.++.+.+.|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 46789999999999999999999988655999999 89999999999999999999999999999999999999998766
Q ss_pred ccc
Q psy3067 106 QHR 108 (141)
Q Consensus 106 ~~~ 108 (141)
+..
T Consensus 96 ~~~ 98 (104)
T 1wg5_A 96 VRT 98 (104)
T ss_dssp SCC
T ss_pred HHH
Confidence 543
No 4
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.83 E-value=8.1e-22 Score=144.06 Aligned_cols=81 Identities=48% Similarity=0.634 Sum_probs=74.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++||||++|++||++||+.|+|+.++|+|+.| .+|+++|+|||+|.++++|++||++++..|++|+|+|.+++..+
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d-~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVD-PEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCC-SSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHHH
Confidence 46789999999999999999999988446999999 56999999999999999999999999999999999999998876
Q ss_pred cc
Q psy3067 106 QH 107 (141)
Q Consensus 106 ~~ 107 (141)
+.
T Consensus 123 ~~ 124 (126)
T 2hgm_A 123 VR 124 (126)
T ss_dssp HC
T ss_pred hh
Confidence 54
No 5
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-21 Score=134.23 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=71.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++||||++|++||++||+.++++ .|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 17 CVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 46778999999999999999999977 5999999 59999999999999999999999999999999999999988744
No 6
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=2.5e-20 Score=132.80 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=73.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||++||+.|+. + ..|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v-~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGV-AGVHFIYT-REGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGG-GGEEEEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCc-eeEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4678999999999999999999987 5 37999999 56999999999999999999999999999999999999998
Q ss_pred hhhcc
Q psy3067 103 YTVQH 107 (141)
Q Consensus 103 ~~~~~ 107 (141)
..+++
T Consensus 97 ~~~~~ 101 (118)
T 2db1_A 97 RTEMD 101 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 7
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=3.3e-20 Score=136.74 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=73.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||++||+.|+. + .+|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus 46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v-~~v~i~~d-~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGA-AGVHFIYT-REGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTCCCSSSS-TTEEEEEC-SSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcCce-eEEEEEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECC
Confidence 4788999999999999999999987 5 47999999 56999999999999999999999999999999999999998
Q ss_pred hhhcc
Q psy3067 103 YTVQH 107 (141)
Q Consensus 103 ~~~~~ 107 (141)
..++.
T Consensus 124 ~~e~~ 128 (136)
T 2hgl_A 124 RTEMD 128 (136)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 76654
No 8
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=130.88 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=72.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCc---ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEI---ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~i---v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||++||+.|+. + .+|+|+.| ..|+++|+|||+|.++++|++||++|+..|++|+|+|..++
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v-~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGE-NGIHFLLN-RDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTSCBTTTT-TTEECCCC-TTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcCCc-ceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 4678999999999999999999987 5 37999999 55999999999999999999999999999999999999998
Q ss_pred hhhcc
Q psy3067 103 YTVQH 107 (141)
Q Consensus 103 ~~~~~ 107 (141)
..++.
T Consensus 91 ~~~~~ 95 (107)
T 2lmi_A 91 NEDVD 95 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 9
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.1e-20 Score=129.13 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=74.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.|+++||||++|++||++||+.|+++..+|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++..+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 17 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVD-NNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCC-TTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred EEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 46789999999999999999999988447999999 59999999999999999999999999999999999999998765
Q ss_pred cc
Q psy3067 106 QH 107 (141)
Q Consensus 106 ~~ 107 (141)
..
T Consensus 96 ~~ 97 (114)
T 2cpy_A 96 MR 97 (114)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=4e-20 Score=136.86 Aligned_cols=78 Identities=28% Similarity=0.335 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.|+++||||++|++||++||+.|+++ .|+|++| .+|+++|+|||+|.++++|++||++|+..|++|+|+|..++..+
T Consensus 48 ~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d-~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIG-PDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCS-SSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEEC-CCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 46889999999999999999999976 5999999 56999999999999999999999889999999999999988744
Q ss_pred c
Q psy3067 106 Q 106 (141)
Q Consensus 106 ~ 106 (141)
.
T Consensus 125 ~ 125 (139)
T 2hgn_A 125 A 125 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=118.59 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=69.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||++||+.++|. .|+|+.| .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++.
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~~i~--~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPLKPV--AIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTSCCS--EEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred EEEEECCCCCCCHHHHHHHHhhCCce--EEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 35778999999999999999999665 5999999 899999999999999999999999999999999999999876
No 12
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-19 Score=126.72 Aligned_cols=79 Identities=25% Similarity=0.414 Sum_probs=71.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++||||++|++||++||+.|+.+.+.+.+..+ .+|+++|+|||+|.++++|++||++|+..|++|+|.|..++..+
T Consensus 27 ~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-CCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHHH
Confidence 57889999999999999999999888543555555 89999999999999999999999999999999999999998755
No 13
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=120.44 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=70.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+.+
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 368899999999999999999997663 69999998889999999999999999999997 699999999999987754
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=122.17 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=68.6
Q ss_pred HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i~~RyIeV~~ss~ 103 (141)
|+++|||+++||+||+++|+.+| .+ .+|+|+.|+.+|+++|+|||+|.++++|++||+. |+..++||.|.|..+.+
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v-~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQA-REVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCC-SBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEe-EEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 56799999999999999999997 45 3699999988999999999999999999999984 45579999999998865
Q ss_pred h
Q psy3067 104 T 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 83 ~ 83 (91)
T 2lxi_A 83 K 83 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-19 Score=123.15 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC----cCCCee
Q psy3067 22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE----RIGHRY 95 (141)
Q Consensus 22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~----~i~~Ry 95 (141)
+.|+.++++|||+++|++||+++|+.++.+ -.+|+++.|+.+|+++|+|||+|.++++|++|++ .|+. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 344557778999999999999999999732 1469999998899999999999999999999998 4665 589999
Q ss_pred EEEEecc
Q psy3067 96 IFFTGHR 102 (141)
Q Consensus 96 IeV~~ss 102 (141)
|.|..|.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9998774
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2.5e-18 Score=116.18 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=68.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||+++|+.++ -+ .+|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v-~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCC-CCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCce-EEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 467899999999999999999999 45 369999998899999999999999999999996 79999999999999887
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 17
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=6.3e-18 Score=112.78 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=68.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++.++..|+||.|.|..+
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFGEVV-DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467899999999999999999997774 699999978899999999999999999999999888999999999754
No 18
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=2.2e-18 Score=112.13 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=67.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
++.+|||+++|++||+++|+.++.+. .|.++.++.+|+++|+|||+|.++++|++|+++|+..++||.|.|..+
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCS-EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 45689999999999999999998773 699999977899999999999999999999999999999999998753
No 19
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=7e-18 Score=116.17 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++|. .|.|+.|+.+|+++|+|||+|.++++|++||++|+..|++|.|.|..+...
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~gi~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 17 TAYVGNLPFNTVQGDIDAIFKDLSIR--SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCce--EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 45778999999999999999999965 499999977899999999999999999999988999999999999988763
No 20
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7e-18 Score=114.03 Aligned_cols=76 Identities=28% Similarity=0.375 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..++
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 17 VIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 367789999999999999999998774 57888877899999999999999999999998 69999999999999875
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=1.2e-17 Score=110.11 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=70.6
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++++|||+++|++||+++|+.++.+. +|.++.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+...
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 46789999999999999999997763 69999998899999999999999999999999 6999999999999988764
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=117.42 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=71.0
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++++|||+++|++||+++|+.++.+. +|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus 9 lfV~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57789999999999999999998773 69999998889999999999999999999998 6999999999999998653
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=7.2e-18 Score=119.14 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=67.9
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
|+++|||+++|++||+++|+.|+.|. +|+|+.| . ++++|+|||+|.++++|++|++ +|+..|+||.|.|..+....
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d-~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCD-E-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-T-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEE-EEEEeec-C-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 67899999999999999999998773 6999998 3 5689999999999999999997 69999999999999876422
Q ss_pred ccc------C----CCCCCCCcccCCCC
Q psy3067 106 QHR------A----PRCETSIPVSSSTH 123 (141)
Q Consensus 106 ~~~------~----~~~~~~lp~~~~~~ 123 (141)
... . .-++.+||.+.|++
T Consensus 85 ~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 EREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp C---------------------------
T ss_pred ccccccccccCCCCceEeCCCCCCcccc
Confidence 111 1 12356888777765
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=113.84 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=72.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++||++|+..+++|.|.|..+....
T Consensus 12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 12 KIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp EEEEESCCSSCCHHHHHHHHSSSSCEE-EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 467789999999999999999997773 6999999788999999999999999999999999999999999999987633
No 25
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=9.6e-18 Score=111.91 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.++++|++|+.+|+..+++|.|.|..+..
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEE-EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 467799999999999999999997774 69999997799999999999999999999998899999999999998865
No 26
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=114.68 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC-CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN-GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~-Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++|. .|.|+.|+.+ |+++|+|||+|.++++|++||.+|+..|++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~Gi~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 17 TAFLGNLPYDVTEESIKEFFRGLNIS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHTTTSCEE--EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHCCce--EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence 46778999999999999999999943 5999999666 99999999999999999999988999999999999998763
No 27
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=112.00 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=69.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCccccc--------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNG--------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYI 96 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~--------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyI 96 (141)
.++++|||+++|++||+++|+.++.+. . |.++.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCBC-EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEe-eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 356789999999999999999998774 5 9999998889999999999999999999998 79999999999
Q ss_pred EEEecc
Q psy3067 97 FFTGHR 102 (141)
Q Consensus 97 eV~~ss 102 (141)
.|..++
T Consensus 94 ~V~~A~ 99 (99)
T 2la6_A 94 KVSFAT 99 (99)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998763
No 28
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=3.4e-18 Score=111.00 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=67.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
++.+|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++.++..++||.|.|..+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCS-EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 35689999999999999999998773 699999978899999999999999999999999999999999988754
No 29
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=112.64 Aligned_cols=77 Identities=26% Similarity=0.301 Sum_probs=68.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .+.++.++.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..++.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 357789999999999999999998774 57777777899999999999999999999996 699999999999998754
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=116.95 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.+|.+. +|+|+.| ..|+++|+|||+|.++++|++||+.++..++||.|.|..+..
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~-~v~i~~d-~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEE-EEEEECC-CTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEE-EEEEEEC-CCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 567899999999999999999998773 7999999 459999999999999999999999999999999999997753
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=108.94 Aligned_cols=76 Identities=26% Similarity=0.219 Sum_probs=69.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 9 l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 9 VFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 56789999999999999999997663 69999997799999999999999999999998 699999999999988764
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=110.74 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=71.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccE-EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI-TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I-~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++++|||+++|++||+++|+.++.+. .| +|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 8 IFIGNLDPEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCBS-SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 56789999999999999999998774 58 999998899999999999999999999999 7999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 87 ~ 87 (96)
T 1x5t_A 87 D 87 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=110.82 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 357789999999999999999997763 69999996699999999999999999999995 7999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 89 ~ 89 (99)
T 1whw_A 89 K 89 (99)
T ss_dssp S
T ss_pred c
Confidence 3
No 34
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=114.40 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=72.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.|+..|++|.|.|..+....
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFSQYGEVV-DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCC
Confidence 567899999999999999999997763 6999999889999999999999999999999999999999999999887633
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.1e-17 Score=110.90 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=71.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 17 TIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 467789999999999999999997773 69999997799999999999999999999999 6999999999999988763
No 36
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.7e-17 Score=123.42 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=82.9
Q ss_pred HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
...++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++||+.++..+++|.|.|..+..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 34578899999999999999999997663 69999997889999999999999999999999999999999999998865
Q ss_pred hhcccCC--------CCCCCCcccCCCCCCC
Q psy3067 104 TVQHRAP--------RCETSIPVSSSTHKPG 126 (141)
Q Consensus 104 ~~~~~~~--------~~~~~lp~~~~~~~~~ 126 (141)
......+ =++.+||.+.+.+.++
T Consensus 92 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~ 122 (196)
T 1l3k_A 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122 (196)
T ss_dssp -----------CCSEEEEECCTTTCCHHHHH
T ss_pred cccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 3322111 1156899888776554
No 37
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=114.21 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
..|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+.|+..|++|.|.|..+...
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 3478899999999999999999997663 699999988899999999999999999999999999999999999988763
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.8e-17 Score=108.94 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=69.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..++
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 467789999999999999999997763 69999997889999999999999999999999 69999999999998765
No 39
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=114.45 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecC-CCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP-FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~-~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++ + ..|+|+.|+ .+|+++|+|||+|.+.++|++|+++|+..++||.|.|..+..
T Consensus 21 ~l~V~nLp~~~t~~~l~~~F~~~G-i-~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 21 TAFLGNLPYDVTEESIKEFFRGLN-I-SAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp EEEESCCSSCCSSSHHHHHSCSSC-E-EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-C-eEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence 357799999999999999999999 5 369999995 489999999999999999999998899999999999998765
No 40
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=110.66 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +.+.|++|.|.|..+....
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTC
T ss_pred EEEEEcCCCcCCHHHHHHHHHhcCCeE-EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCC
Confidence 467789999999999999999997663 69999997789999999999999999999999 5778999999999987643
No 41
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-17 Score=107.04 Aligned_cols=74 Identities=14% Similarity=0.265 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
++.+|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++.....++||.|.|..+
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCC-CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 45689999999999999999998773 799999977899999999999999999999996449999999998764
No 42
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=1.1e-16 Score=111.91 Aligned_cols=80 Identities=25% Similarity=0.219 Sum_probs=72.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+++|||+++|++||+++|+.|+.+. .|+|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 17 HVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 467789999999999999999997663 69999997799999999999999999999998 6999999999999998764
Q ss_pred hc
Q psy3067 105 VQ 106 (141)
Q Consensus 105 ~~ 106 (141)
..
T Consensus 96 ~~ 97 (115)
T 2dgo_A 96 PP 97 (115)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.9e-17 Score=111.45 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=72.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 467889999999999999999997663 69999997799999999999999999999999 5999999999999998764
Q ss_pred hc
Q psy3067 105 VQ 106 (141)
Q Consensus 105 ~~ 106 (141)
..
T Consensus 96 ~~ 97 (105)
T 1x5u_A 96 NK 97 (105)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 44
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=4.9e-17 Score=107.60 Aligned_cols=75 Identities=19% Similarity=0.055 Sum_probs=68.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEE-EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999997663 69999998899999999999999999999996 6999999999999865
No 45
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=9.3e-17 Score=119.48 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=83.5
Q ss_pred CcCCCCceeEEEEEecHHHH----------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEe
Q psy3067 5 RTGEVSDRYIEVFKVRRQEM----------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQF 74 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~----------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F 74 (141)
+.+.|+.|.|.|-.+...+. ..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|
T Consensus 75 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F 153 (196)
T 1l3k_A 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTF 153 (196)
T ss_dssp CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEE
T ss_pred CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCCCCccceEEEEE
Confidence 45668889999888755432 1367789999999999999999998763 699999977999999999999
Q ss_pred CCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067 75 VDKETAELALQKHKERIGHRYIFFTGHRYTVQ 106 (141)
Q Consensus 75 ~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~ 106 (141)
.+.++|.+||+.++..|+||.|.|..+...+.
T Consensus 154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp SSHHHHHHHHHCSCCEETTEECEEEECC----
T ss_pred CCHHHHHHHHHhCCcEECCEEEEEEecCChhH
Confidence 99999999999999999999999999876443
No 46
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=108.29 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=70.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 8 LYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEE-EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 56789999999999999999997663 69999997789999999999999999999999 799999999999998866
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.1e-17 Score=111.26 Aligned_cols=79 Identities=18% Similarity=0.040 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 467789999999999999999997773 69999998889999999999999999999997 6999999999999988764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 93 ~ 93 (102)
T 2cqb_A 93 R 93 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=1.8e-17 Score=114.43 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHHHhcCCC------CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC-eeEE
Q psy3067 26 WKLQHTGIV------EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH-RYIF 97 (141)
Q Consensus 26 ~~~~~gLp~------s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~-RyIe 97 (141)
.++++|||+ ++++++|+++|+.++.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++ |.|.
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV-NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 367899999 999999999999998763 69999997789999999999999999999997 79999999 9999
Q ss_pred EEecchhhc
Q psy3067 98 FTGHRYTVQ 106 (141)
Q Consensus 98 V~~ss~~~~ 106 (141)
|..+...++
T Consensus 87 V~~a~~~~~ 95 (100)
T 3ns6_A 87 LYTMKDVER 95 (100)
T ss_dssp EEESHHHHH
T ss_pred EEECchhhh
Confidence 999876443
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-17 Score=114.50 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=72.6
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
..|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||.+|+..|++|.|.|..+...
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEe-EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 3578899999999999999999997663 699999977899999999999999999999988999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 105 ~ 105 (114)
T 2cq4_A 105 K 105 (114)
T ss_dssp H
T ss_pred c
Confidence 3
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=109.17 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.| .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTN-RAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEEC-CCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 467789999999999999999998663 6999999 599999999999999999999996 699999999999998865
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=7.6e-17 Score=113.03 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=70.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++..+..++||.|.|..+..
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFP 103 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCeE-EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence 467899999999999999999998773 69999997789999999999999999999999877999999999998865
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=108.94 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=68.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..++
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLT-KVTICKD-REGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEEC-TTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 577899999999999999999997774 6999999 569999999999999999999999 79999999999998764
No 53
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=9e-17 Score=120.14 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=71.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss 102 (141)
.|+++||||++|++||+++|+.|+ .+ .+|.|+.|+.+|+++|+|||+|.+.++|++||+. |+..|+||.|.|..+.
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v-~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDV-VELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccE-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 578899999999999999999999 45 3699999988999999999999999999999996 9999999999999997
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
.
T Consensus 136 ~ 136 (156)
T 3n9u_C 136 R 136 (156)
T ss_dssp H
T ss_pred C
Confidence 5
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=9.1e-17 Score=109.26 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=70.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+....
T Consensus 5 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 5 VYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred EEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 46789999999999999999998773 69999997789999999999999999999997 69999999999999987643
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=107.98 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=68.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEE-EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 467789999999999999999997773 69999997789999999999999999999997 6999999999999865
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-17 Score=110.64 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=71.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 467789999999999999999997773 69999997899999999999999999999996 6999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 93 ~ 93 (102)
T 1x5s_A 93 S 93 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=111.57 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 15 TLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 467889999999999999999997663 69999997789999999999999999999999 799999999999999876
No 58
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=111.81 Aligned_cols=79 Identities=22% Similarity=0.205 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccc-------cEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISN-------GITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF 97 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~-------~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe 97 (141)
.++++|||+++|++||+++|+.++.+.. .|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (113)
T 2cpe_A 17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 96 (113)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence 4678899999999999999999987742 59999998899999999999999999999998 699999999999
Q ss_pred EEecchh
Q psy3067 98 FTGHRYT 104 (141)
Q Consensus 98 V~~ss~~ 104 (141)
|..+...
T Consensus 97 V~~a~~~ 103 (113)
T 2cpe_A 97 VSLARKK 103 (113)
T ss_dssp EECSSCC
T ss_pred EEECCCC
Confidence 9988763
No 59
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=110.82 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc------CCcCCCeeEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH------KERIGHRYIFF 98 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~------~~~i~~RyIeV 98 (141)
.++++|||+++|++||+++|+.++.+ ..|+|+.|+.+|+++|+|||+|.+.++|++||+ .| +..+++|.|.|
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 46789999999999999999999876 369999998889999999999999999999998 57 89999999999
Q ss_pred Eecchh
Q psy3067 99 TGHRYT 104 (141)
Q Consensus 99 ~~ss~~ 104 (141)
..+...
T Consensus 96 ~~a~~~ 101 (111)
T 1x4h_A 96 DLAVTR 101 (111)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 988763
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=1.2e-16 Score=111.85 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=71.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.|+.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 567899999999999999999997663 69999997799999999999999999999996 6999999999999988763
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=109.48 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=70.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 26 l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 26 LFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp EEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 67889999999999999999997773 69999998889999999999999999999998 699999999999988764
No 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=1.8e-16 Score=109.41 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+ ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..++
T Consensus 31 ~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 31 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 36778999999999999999999777 36999999 599999999999999999999999 69999999999998764
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=109.30 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=72.0
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
..++++|||+++|++||+++|+.++.+. .|.|+.++.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 3578899999999999999999997663 69999997799999999999999999999997 799999999999999875
Q ss_pred h
Q psy3067 104 T 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 3
No 64
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=1.1e-16 Score=113.33 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=70.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|+++|+..++||.|.|..+..
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEE-EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 367799999999999999999997663 69999997899999999999999999999998899999999999998764
No 65
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=1e-16 Score=115.78 Aligned_cols=99 Identities=16% Similarity=0.234 Sum_probs=81.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|++||+++|+.++.+. +|.++.++.+|+++|+|||+|.++++|++|++ .|+..+++|.|.|..+....
T Consensus 5 l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 46789999999999999999998774 69999996699999999999999999999998 69999999999999887533
Q ss_pred cccCC--CCCCCCcccCCCCCCC
Q psy3067 106 QHRAP--RCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~~~~~--~~~~~lp~~~~~~~~~ 126 (141)
..... =++.+||.+.+.+.++
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~ 106 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELE 106 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHH
T ss_pred ccCCCCcEEECCCCCcCCHHHHH
Confidence 22221 2256888777665443
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=110.60 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=70.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.++.+|+++|+|||+|.++++|++|++ .|+..++||.|.|..+..
T Consensus 28 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 28 RLYVGSLHFNITEDMLRGIFEPFGRIE-SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCEE-EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 357789999999999999999998773 69999998889999999999999999999997 799999999999998764
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=108.52 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCC---CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPF---NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~---~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+. +|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 356789999999999999999997663 699998854 55999999999999999999999 5999999999999988
Q ss_pred chh
Q psy3067 102 RYT 104 (141)
Q Consensus 102 s~~ 104 (141)
...
T Consensus 86 ~~~ 88 (98)
T 2cpf_A 86 ERA 88 (98)
T ss_dssp SCS
T ss_pred cCC
Confidence 763
No 68
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=1.7e-16 Score=110.21 Aligned_cols=77 Identities=21% Similarity=0.106 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 367889999999999999999997773 69999997899999999999999999999998 799999999999998865
No 69
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=4.7e-16 Score=106.93 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=69.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC---eeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH---RYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~---RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+.+ |.|.|..+
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQPFGVID-ECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 467789999999999999999997663 6999999 599999999999999999999998 69988887 99999988
Q ss_pred chh
Q psy3067 102 RYT 104 (141)
Q Consensus 102 s~~ 104 (141)
...
T Consensus 95 ~~~ 97 (105)
T 2dnh_A 95 DTD 97 (105)
T ss_dssp CSS
T ss_pred ccC
Confidence 763
No 70
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=110.85 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++||+.....+++|.|.|..+...
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 19 KIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 96 (116)
T ss_dssp EEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCee-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence 467889999999999999999997663 699999978899999999999999999999996434899999999998653
No 71
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=7e-17 Score=124.02 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=83.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+++|||+++||+||+++|+.++.|. +|+|+.|+.+|+++|+|||+|.+.++|++||+ .|+..+.+|.|.+..+...
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 378899999999999999999997763 69999998899999999999999999999998 5999999999999988653
Q ss_pred hccc--C--CCCCCCCcccCCCCCCC
Q psy3067 105 VQHR--A--PRCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 ~~~~--~--~~~~~~lp~~~~~~~~~ 126 (141)
.... . .=++.+||++.+.+.|.
T Consensus 96 ~~~~~~~~~~l~v~nl~~~~t~~~l~ 121 (213)
T 4f02_A 96 PSLRKSGVGNIFIKNLDKSIDNKALY 121 (213)
T ss_dssp THHHHHCTTEEEEESCCTTCCHHHHH
T ss_pred ccccccccccceECCcccccHHHHHH
Confidence 3221 1 12367899887776554
No 72
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=8.2e-17 Score=116.85 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=82.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|++||+++|+.++.+. +|.++.++.+|+++|+|||+|.++++|++|++ .|+..+++|.|.|..+....
T Consensus 6 l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 6 LIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 56789999999999999999998773 69999997799999999999999999999997 79999999999999887633
Q ss_pred cccCCC--CCCCCcccCCCCCCC
Q psy3067 106 QHRAPR--CETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~~~~~~--~~~~lp~~~~~~~~~ 126 (141)
...... ++.+||.+.+.+.++
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~ 107 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLD 107 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHH
T ss_pred ccCCCCCEEEeCCCCCCCHHHHH
Confidence 322222 256888877766554
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=108.22 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=70.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec-CCCCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED-PFNGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d-~~~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.+ +.+|+++|+|||+|.+.++|++|++ + |+..+++|.|.|..+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 17 KILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred EEEEeCCCCcCCHHHHHHHHHccCCeE-EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 467789999999999999999997663 6999998 6699999999999999999999998 5 8999999999999987
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
..
T Consensus 96 ~~ 97 (107)
T 2cph_A 96 SE 97 (107)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=107.99 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=69.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.|+++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVV-RADILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 467889999999999999999997663 6999999 689999999999999999999999 699999999999998765
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=110.90 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKD-RTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECS-TTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 357789999999999999999997773 6999999 599999999999999999999998 6999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 87 ~ 87 (116)
T 2fy1_A 87 S 87 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=106.15 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=70.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| +|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSPFGTIT-SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTTTSCEE-EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 467889999999999999999997663 6999987 89999999999999999999998 6999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 94 ~ 94 (103)
T 2d9p_A 94 E 94 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1.9e-16 Score=109.03 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC---CCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI---GHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i---~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+ ++|.|.|..+
T Consensus 15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 15 KLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCC-EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 467789999999999999999997663 69999997789999999999999999999998 788887 8999999988
Q ss_pred chh
Q psy3067 102 RYT 104 (141)
Q Consensus 102 s~~ 104 (141)
...
T Consensus 94 ~~~ 96 (106)
T 2dgp_A 94 DSE 96 (106)
T ss_dssp CCC
T ss_pred Ccc
Confidence 763
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=107.52 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=69.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee----EEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY----IFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry----IeV~~ 100 (141)
.++++|||+++|++||+++|+.++.+...|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|. |.|..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~ 90 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY 90 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence 467889999999999999999997652269999997899999999999999999999999 6999999999 88887
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
++.
T Consensus 91 a~~ 93 (99)
T 2div_A 91 ATY 93 (99)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=108.70 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCHHHHHhhccc-CCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCc-CCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDG-LEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKER-IGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~-~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~-i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+. ++.+ ..|.|+.|+ +|+++|+|||+|.+.++|++|++ +|+.. +++|.|.|..+.
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYPSC-RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCTTE-EEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 4678899999999999999999 9866 369999994 99999999999999999999999 68888 999999998886
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
.
T Consensus 89 ~ 89 (104)
T 2dhg_A 89 P 89 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.8e-17 Score=107.00 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.+..+
T Consensus 8 l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 8 LYIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EEEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999997763 69999998889999999999999999999999 7999999999876543
No 81
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=3e-17 Score=112.43 Aligned_cols=77 Identities=16% Similarity=0.017 Sum_probs=68.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+.. .++.|+.+|+++|+|||+|.+.++|++||++|+..+++|.|.|..+...
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 4678999999999999999999987753 5556657899999999999999999999999999999999999988763
No 82
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=105.16 Aligned_cols=76 Identities=24% Similarity=0.202 Sum_probs=68.2
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCC-cceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGR-PTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr-~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|.|+.|+.++. ++|+|||+|.++++|++|++ .|+..++||.|.|..+..
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 46789999999999999999997773 699999855555 99999999999999999999 699999999999998864
No 83
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=1.8e-16 Score=115.22 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=81.5
Q ss_pred CCCCceeEEEEEecHHHHH----HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 7 GEVSDRYIEVFKVRRQEMD----WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 7 ~~ig~RyIEv~~~~~~d~~----~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
+.++.|.|.|-.+...... .++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|++
T Consensus 66 ~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 66 HILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp CEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCS-EEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred cccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEE-EEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 3466777777666543332 357789999999999999999997773 69999997789999999999999999999
Q ss_pred HHHHcCCcCCCeeEEEEecch
Q psy3067 83 ALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 83 AL~k~~~~i~~RyIeV~~ss~ 103 (141)
|+++|+..++||.|.|..+.+
T Consensus 145 A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 145 VCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HHHCSEECSSSSCEEEEECCC
T ss_pred HHhCCCEEeCCeEEEEeecCC
Confidence 999999999999999998865
No 84
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-16 Score=112.68 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+...
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 567899999999999999999997763 69999997889999999999999999999998 6999999999999988763
No 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.3e-16 Score=105.74 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=67.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+++ + .|.++.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~--~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGS--V--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTC--S--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEeCCCCccCHHHHHHHhcCC--e--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 46788999999999999999976 3 38899997799999999999999999999998 699999999999998876
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2.1e-16 Score=110.99 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=68.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVI-SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEE-EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 467789999999999999999998773 69999997889999999999999999999998 6999999999998765
No 87
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.6e-16 Score=114.62 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=79.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|++||+++|+.++.+. +|.++.+ .+|+++|+|||+|.+.++|++|++ .|+..+++|.|.|..+....
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIA-NIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 45789999999999999999998774 7999999 789999999999999999999995 79999999999999886533
Q ss_pred cccCC----CCCCCCcccCCCCCCC
Q psy3067 106 QHRAP----RCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~~~~~----~~~~~lp~~~~~~~~~ 126 (141)
..... =++.+||.+.+.+.+.
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~ 105 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLR 105 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHH
T ss_pred CCCCCCCceEEECCCCCCCCHHHHH
Confidence 32211 1156888887766554
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=5e-16 Score=112.39 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.++++|++|++ +|+..|++|.|.|..+..
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEE-EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 467789999999999999999997663 69999998889999999999999999999999 699999999999987765
No 89
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=3.9e-17 Score=118.71 Aligned_cols=98 Identities=10% Similarity=0.154 Sum_probs=79.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++|||+++|++||+++|+.++.+. +|.++.|+.+|+++|+|||+|.++++|++|++. .+.++||.|.|..+....
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVT-DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEE-EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccchh
Confidence 357799999999999999999998773 699999977899999999999999999999984 678999999998886533
Q ss_pred ccc--CCCCCCCCcccCCCCCC
Q psy3067 106 QHR--APRCETSIPVSSSTHKP 125 (141)
Q Consensus 106 ~~~--~~~~~~~lp~~~~~~~~ 125 (141)
... ..=++.+||.+.+.+.+
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l 104 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEF 104 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHH
T ss_pred hccCCCeEEECCCCCCCCHHHH
Confidence 222 12225677777666544
No 90
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.3e-16 Score=115.16 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=83.7
Q ss_pred CCcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHH
Q psy3067 4 CRTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKET 79 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~ 79 (141)
.+...|+.|.|.|-...... -..++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.++++
T Consensus 70 ~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 70 FDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp GTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred hCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce-EEEEEecCCCCCcceEEEEEeCCHHH
Confidence 35666778888887665432 23578899999999999999999998773 79999997799999999999999999
Q ss_pred HHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 80 AELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 80 a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
|++|++ .|+..++||.|.|..|+
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHcCCCEECCeEEEEEeCC
Confidence 999998 69999999999998764
No 91
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=3.2e-16 Score=114.91 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +|+..++||.|.|..+..
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEE-EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457789999999999999999998773 69999997799999999999999999999998 599999999999999876
No 92
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=9e-16 Score=108.89 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=70.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+ ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus 37 ~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 37 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECC-SSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 46788999999999999999999766 36999999 599999999999999999999999 7999999999999988763
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=5.6e-16 Score=109.88 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.|+++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 467899999999999999999997763 69999997799999999999999999999997 799999999999998865
No 94
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=8e-16 Score=113.08 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=70.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.|+++|||+++|++||+++|+.|+.|. .|.|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+..
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 467789999999999999999997663 69999997789999999999999999999999 699999999999999875
No 95
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=114.18 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC----cCCCeeEEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE----RIGHRYIFFT 99 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~----~i~~RyIeV~ 99 (141)
.++++||||++|++||+++|+.|+.+. .+|+|+.|+.+|+++|+|||+|.+. +|++|++ +|+. .++||.|.|.
T Consensus 25 ~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~ 103 (131)
T 2m2b_A 25 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVE 103 (131)
T ss_dssp EEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEE
Confidence 468899999999999999999997763 2399999977999999999999999 9999998 6888 9999999999
Q ss_pred ecchh
Q psy3067 100 GHRYT 104 (141)
Q Consensus 100 ~ss~~ 104 (141)
.+...
T Consensus 104 ~a~~~ 108 (131)
T 2m2b_A 104 FAKGS 108 (131)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 88663
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=1.3e-16 Score=106.89 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=67.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.+ |++|++ +|+..++||.|.|..+..
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVF-NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCS-EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEE-EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 46789999999999999999997773 6999999778999999999999999 999998 599999999999998876
No 97
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=104.37 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| ..+ ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~-~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFN-ERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECC-TTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEec-CCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 467789999999999999999997773 6999998 444 99999999999999999998 6999999999999998763
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=8.2e-16 Score=103.19 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.+ +|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 357789999999999999999997663 6888875 89999999999999999999998 699999999999988865
No 99
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=4.6e-16 Score=122.56 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.|+++||||++|++||+++|+.|+ -| ..|+|+.|+.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+.
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v-~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCE-EEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcce-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 478899999999999999999998 44 369999998899999999999999999999999 69999999999999886
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
.
T Consensus 149 ~ 149 (229)
T 3q2s_C 149 K 149 (229)
T ss_dssp H
T ss_pred C
Confidence 5
No 100
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=2.4e-16 Score=108.02 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=68.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+ ..|.|+.|+ +|+++|+|||+|.+.++|++|++ ++..|+||.|.|..+..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 35678999999999999999999877 369999994 99999999999999999999999 99999999999988865
No 101
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=7.8e-16 Score=110.97 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=80.9
Q ss_pred CcCCCCceeEEEEEecHHH------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQE------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e 78 (141)
+...++.|.|.|-.+.... -..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.+
T Consensus 62 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 62 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp TTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHH
T ss_pred CCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcceEEEEEeCCHH
Confidence 4455667777776553221 12467789999999999999999998774 6999999889999999999999999
Q ss_pred HHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 79 TAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 79 ~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
+|++|++ +|+..++||.|.|..++
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999998 79999999999998765
No 102
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=111.13 Aligned_cols=75 Identities=19% Similarity=0.055 Sum_probs=67.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+
T Consensus 65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 65 VLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEEEEeCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456789999999999999999997773 69999998899999999999999999999997 6999999999998753
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=104.69 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=67.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++. |+++.+ .+|+++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~----v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 17 TLVLSNLSYSATEETLQEVFEKATF----IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHCSSCSE----EECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCE----EEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 4677899999999999999999874 577888 899999999999999999999999 7999999999999988763
No 104
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=1.5e-15 Score=114.45 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=82.5
Q ss_pred CcCCCCceeEEEEEecHHHH---------------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067 5 RTGEVSDRYIEVFKVRRQEM---------------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE 69 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~---------------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~ 69 (141)
+...|+.|.|.|-....... ..++++|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~ 169 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARDPTTGKHKGY 169 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-EEEEEECTTTCCEEEE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-EEEEEecCCCCCcCce
Confidence 56678888888866543221 1356689999999999999999998773 6999999789999999
Q ss_pred eEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 70 AYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 70 afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
|||+|.+.++|.+|++ +|+..|++|.|.|..+..
T Consensus 170 afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 170 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred EEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 9999999999999999 699999999999998865
No 105
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=103.46 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| . +.++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 17 TLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITE-H-TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECC-C-CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred EEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEec-C-CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 467889999999999999999997774 6999998 3 3378999999999999999998 7999999999999998763
No 106
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=1.2e-15 Score=111.05 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEEEe
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG--RPTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFFTG 100 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV~~ 100 (141)
++++|||+++|++||+++|+.++.+. +|+|+.++.+| +++|+|||+|.++++|++|++ .|+..+. ++.+.+..
T Consensus 6 l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 6 MFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 56789999999999999999998774 79999996565 999999999999999999998 6776655 67888887
Q ss_pred cchhhccc---CCCCCCCCcccCCCCCCC
Q psy3067 101 HRYTVQHR---APRCETSIPVSSSTHKPG 126 (141)
Q Consensus 101 ss~~~~~~---~~~~~~~lp~~~~~~~~~ 126 (141)
+....... ..=++.+||.+.+.+.++
T Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 113 (175)
T 3nmr_A 85 ADSEKNNAVEDRKLFIGMISKKCTENDIR 113 (175)
T ss_dssp CGGGCCSCGGGSEEEEESCCTTCCHHHHH
T ss_pred ccccccccCCCCeEEEcCCCCcCCHHHHH
Confidence 76533222 112256889887766554
No 107
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=7.2e-16 Score=114.79 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCcCCCCceeEEEEEecHH------------------------HHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEee
Q psy3067 4 CRTGEVSDRYIEVFKVRRQ------------------------EMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVE 59 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~------------------------d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~ 59 (141)
.+...|+.|.|.|-.+... .-..++++|||+++|++||+++|+.++.+ ..|+++.
T Consensus 70 l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~ 148 (198)
T 2yh0_A 70 FDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVK 148 (198)
T ss_dssp GTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEE
T ss_pred hcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEee
Confidence 4566788888888766432 12356788999999999999999999777 3699999
Q ss_pred cCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 60 DPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 60 d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
|+.+|+++|+|||+|.+.++|++|++ +|+..++||.|.|..+....
T Consensus 149 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 149 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 96799999999999999999999999 69999999999999887643
No 108
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-16 Score=111.32 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=73.3
Q ss_pred HHHHHHhcCCCCCCHHHHHhhcccCCccccc--------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067 24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNG--------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR 94 (141)
Q Consensus 24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~--------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R 94 (141)
-..++++|||+++|++||+++|+.++.+. . |.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..+++|
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 34689999999999999999999998774 5 8899997889999999999999999999998 699999999
Q ss_pred eEEEEecchhh
Q psy3067 95 YIFFTGHRYTV 105 (141)
Q Consensus 95 yIeV~~ss~~~ 105 (141)
.|.|..+....
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999887643
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=1.3e-15 Score=110.86 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=70.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.|+++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCS-EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 467889999999999999999997663 69999997799999999999999999999998 699999999999998875
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-15 Score=105.28 Aligned_cols=77 Identities=10% Similarity=0.035 Sum_probs=67.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCc-ccccEEEe-ecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEI-ISNGITLV-EDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~i-v~~~I~i~-~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~ 100 (141)
.++++|||+++|++||+++|+.++. +. .|.++ .|+.+|+++|+|||+|.+.++|++|++ +| +..+++|.|.|..
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~-~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVL-DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEE-EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCce-EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 3577899999999999999999964 42 58888 777789999999999999999999999 55 5899999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 89 a~~ 91 (109)
T 2dis_A 89 AEP 91 (109)
T ss_dssp SCS
T ss_pred cCC
Confidence 875
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-15 Score=105.29 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHhcCCCCCCHHHHH---hhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067 26 WKLQHTGIVEGKKDDIA---QFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF 98 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~---~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV 98 (141)
.++++|||+++|++||+ ++|+.++.+. .|.|+.|+.+ ++++|+|||+|.++++|++|++ +|+..|++|.|.|
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~-~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 95 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEE-EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence 46778999999999999 9999998663 6999988543 3677999999999999999999 5999999999999
Q ss_pred Eecch
Q psy3067 99 TGHRY 103 (141)
Q Consensus 99 ~~ss~ 103 (141)
..+..
T Consensus 96 ~~a~~ 100 (111)
T 2cpi_A 96 SLGTT 100 (111)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 98876
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=4e-15 Score=110.77 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=70.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
|+++|||+++|+++|+++|+.|+.|. .|+|+.++.+|+++|+|||+|.+.++|++||+ +|+..|++|.|.|..+..
T Consensus 75 l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEE-EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 68899999999999999999997773 69999998899999999999999999999998 699999999999998865
No 113
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.7e-15 Score=104.20 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=67.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| . ++++|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 31 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~-~-~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFN-E-RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTCCCS-CEEECCB-T-TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred EEEEECCCCcCCHHHHHHHHHhcCCEE-EEEEEEC-C-CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 367789999999999999999997773 6999998 3 5599999999999999999999 699999999999998865
No 114
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-15 Score=102.03 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=66.4
Q ss_pred HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
.++++|||+++|++||+ ++|+.++.+. .|.|+.| ..+ +|+|||+|.++++|++|++ +|+..+++|.|.|..
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~-~v~i~~~-~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVK-SVELSPH-TDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEECSC-CST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEE-EEEEEeC-CCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46788999999999999 9999998663 6999998 444 8999999999999999998 799999999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=9.5e-16 Score=101.38 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=61.4
Q ss_pred HHHhcCCCCC------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEEE
Q psy3067 27 KLQHTGIVEG------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIFF 98 (141)
Q Consensus 27 ~~~~gLp~s~------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIeV 98 (141)
++++|||+++ |++||+++|+.++.+. .|.|+ . .+|+++|+|||+|.++++|++|++ +|+..++|| .|.|
T Consensus 4 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 4 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-C-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-C-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4678999999 7899999999998774 58877 3 799999999999999999999998 699999999 8765
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=105.79 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=68.5
Q ss_pred HHHHhcCCCCC------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEE
Q psy3067 26 WKLQHTGIVEG------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIF 97 (141)
Q Consensus 26 ~~~~~gLp~s~------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIe 97 (141)
.++++|||+++ |+++|+++|+.++.+. .|.|+ . .+|+++|+|||+|.++++|++|++ +|+..++|| .|.
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-C-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-C-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 46789999999 7899999999998773 58887 3 789999999999999999999999 599999999 999
Q ss_pred EEecchhhc
Q psy3067 98 FTGHRYTVQ 106 (141)
Q Consensus 98 V~~ss~~~~ 106 (141)
|..++..++
T Consensus 94 V~~a~~~~k 102 (105)
T 2nlw_A 94 VNLFTDFDK 102 (105)
T ss_dssp EECSCCCCC
T ss_pred EEEcchHhh
Confidence 998875443
No 117
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.8e-15 Score=102.78 Aligned_cols=74 Identities=19% Similarity=0.076 Sum_probs=65.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.|.. +++++|+|||+|.+.++|++|++ +|+..|++|.|.|..+..
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 467889999999999999999997763 577754 46789999999999999999995 799999999999998866
No 118
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=5.8e-15 Score=113.45 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=68.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|+++|+++|+.+|.+. .|+|+.+ .+|+++|+|||+|.++++|++|++..+..++||.|.|....
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEEC-TTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEE-EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 367799999999999999999998774 6999999 78999999999999999999999987779999999998764
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=6.2e-15 Score=102.93 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| ++++|+|||+|.+.++|++|++ +|+..++||.|.|..+...
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 357789999999999999999998774 6888876 6669999999999999999999 7999999999999998753
No 120
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1e-14 Score=101.66 Aligned_cols=75 Identities=8% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC--------CCeeE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI--------GHRYI 96 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i--------~~RyI 96 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+ .+|.|
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLKPFGQVI-STRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 567899999999999999999997663 6999999 599999999999999999999998 799998 46667
Q ss_pred EEEecc
Q psy3067 97 FFTGHR 102 (141)
Q Consensus 97 eV~~ss 102 (141)
.|..+.
T Consensus 105 ~v~~a~ 110 (114)
T 1x5o_A 105 LCKFSG 110 (114)
T ss_dssp EEEECC
T ss_pred eEEccC
Confidence 776554
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.54 E-value=1e-14 Score=111.87 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=80.0
Q ss_pred CcCCCCceeEEEEEecHHHHH------HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQEMD------WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~~------~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e 78 (141)
+...+..|.|.+..+...... .++++|||+++|++||+++|+.++.+. .|+|+.| . +.++|+|||+|.+.+
T Consensus 78 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~d-~-~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 78 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCD-E-NGSKGYGFVHFETQE 154 (213)
T ss_dssp TTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-T-TEEEEEEEEEESSHH
T ss_pred hhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeE-EEEeecc-C-CCCceEEEEEeCCHH
Confidence 455667777877766543322 367789999999999999999997663 6999998 3 558999999999999
Q ss_pred HHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 79 TAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 79 ~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+|++|++ +|+..|+||.|.|..+..
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 9999997 699999999999998865
No 122
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=3.4e-16 Score=114.99 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=78.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++++|||+++|++||+++|+.++.+. ++.+ .+..+|+++|+|||+|.++++|++||++|+..+++|.|.|..+....
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~-~~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 15 NLFIGNLNPNKSVAELKVAISELFAKN-DLAV-VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHH-TCCC-CEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcc-eEEE-EECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 467899999999999999999997664 3333 33378999999999999999999999999999999999999887533
Q ss_pred cccC----CCCCCCCcccCCCCCCC
Q psy3067 106 QHRA----PRCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~~~~----~~~~~~lp~~~~~~~~~ 126 (141)
.... .=++.+||.+.+.+.++
T Consensus 93 ~~~~~~~~~l~v~nlp~~~t~~~l~ 117 (175)
T 1fje_B 93 SKKVRAARTLLAKNLSFNITEDELK 117 (175)
T ss_dssp CSTTGGGGEEEEESCCSSCCHHHHH
T ss_pred ccccccCCEEEEeCCCCCCCHHHHH
Confidence 2211 11256889887766554
No 123
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=2e-15 Score=104.94 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=66.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
|++++||++.+||++|+++|+.++.|. ++++.. ++|+|||+|.++++|++|++ +|+..+++|.|.|..++..
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 567899999999999999999998874 588754 68999999999999999998 7999999999999999765
Q ss_pred hc
Q psy3067 105 VQ 106 (141)
Q Consensus 105 ~~ 106 (141)
+.
T Consensus 82 ~~ 83 (89)
T 2wbr_A 82 EV 83 (89)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 124
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=7.6e-15 Score=110.58 Aligned_cols=100 Identities=22% Similarity=0.149 Sum_probs=78.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..+++|.|.|..+...
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEE-EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 467899999999999999999998663 69999997799999999999999999999999 7999999999999877542
Q ss_pred hccc-------------CCCCCCCCcccCCCCCCC
Q psy3067 105 VQHR-------------APRCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 ~~~~-------------~~~~~~~lp~~~~~~~~~ 126 (141)
.... ..=++.+||.+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 143 (216)
T 2qfj_A 109 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIK 143 (216)
T ss_dssp GGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHH
T ss_pred cccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHH
Confidence 2110 111256888887766554
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-15 Score=100.52 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=64.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++-+ .++ . .+|+++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus 18 ~l~V~nL~~~~t~~~l~~~F~~~g~v----~~~-~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 18 TLLAKNLSFNITEDELKEVFEDALEI----RLV-S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEESCCSSCCHHHHHHHHCSEEEE----CCE-E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHhhCCcE----EEe-C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 46789999999999999999998654 333 4 789999999999999999999999 699999999999998865
No 126
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=1.3e-14 Score=114.55 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=92.1
Q ss_pred CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL 84 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL 84 (141)
+...|+.|.|.|-..... ..++++|||+++|++||+++|+.++.+. .|.++.|+.+|+++|+|||+|.+.++|++|+
T Consensus 78 ~~~~~~g~~i~v~~~~~~--~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 154 (284)
T 3smz_A 78 HQSRLRERELSVQLQPTD--ALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAK 154 (284)
T ss_dssp TTCEETTEECEEEECCCS--CEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCeeCCeEEEEEecCCC--CEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccceEEEEEECCHHHHHHHH
Confidence 445566777776554322 1467789999999999999999998773 6999999779999999999999999999999
Q ss_pred H-HcCCcCCCeeEEEEecchhhcccCC-----CCCCCCccc-CCCCCC
Q psy3067 85 Q-KHKERIGHRYIFFTGHRYTVQHRAP-----RCETSIPVS-SSTHKP 125 (141)
Q Consensus 85 ~-k~~~~i~~RyIeV~~ss~~~~~~~~-----~~~~~lp~~-~~~~~~ 125 (141)
+ .|+..+++|.|.|..+......... =++.+||.+ .+.+.+
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l 202 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDAL 202 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHH
T ss_pred HHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHH
Confidence 5 7999999999999998764432211 125689988 454443
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=4.1e-15 Score=105.96 Aligned_cols=73 Identities=10% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++||||++|++||+++|+.++ .+. .|.+.. ++++|+|||+|.++++|++|++ +|+..++||.|.|..+..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~-~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETT-FSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCS-EEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeE-EEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 467789999999999999999998 553 466533 3588999999999999999997 699999999999998764
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=1e-14 Score=105.73 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=79.1
Q ss_pred CcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA 80 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a 80 (141)
+...++.|.|.|..+.... -..++.+|||+++|++||+++|+.++.+. .|.++.++.+|+++|+|||+|.+.++|
T Consensus 66 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 66 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp TTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-EEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 4556677777777664322 12467789999999999999999997773 699999966999999999999999999
Q ss_pred HHHHH-HcCCcCCC--eeEEEEec
Q psy3067 81 ELALQ-KHKERIGH--RYIFFTGH 101 (141)
Q Consensus 81 ~~AL~-k~~~~i~~--RyIeV~~s 101 (141)
++|++ +|+..+++ |.|.|..|
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999 79999977 99988753
No 129
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-15 Score=105.10 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.+..+..+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSS-SSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcc-ceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 467899999999999999999997663 34333332489999999999999999999998 5999999999999998763
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 106 ~ 106 (115)
T 2cpx_A 106 K 106 (115)
T ss_dssp S
T ss_pred C
Confidence 3
No 130
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.3e-15 Score=102.73 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=59.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ 100 (141)
.++++|||+++|++||+++|+.++.+. +.++.++.+ |+++|+|||+|.++++|++||+.- +.++|+.+.+..
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 467889999999999999999998885 888888555 899999999999999999999853 235666665543
No 131
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=1.2e-14 Score=110.43 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=70.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+++|||+++|++||+++|+.++.| ..|.|+.| .+|+++|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCC-TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 56788999999999999999999777 36999999 599999999999999999999999 6999999999999988763
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 168 ~ 168 (177)
T 2f3j_A 168 I 168 (177)
T ss_dssp G
T ss_pred C
Confidence 3
No 132
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=1.1e-14 Score=104.91 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=77.4
Q ss_pred CcCCCCceeEEEEEecHHH----HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQE----MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA 80 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d----~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a 80 (141)
+...++.|.|.|-.+.... -..++.+|||+++|++||+++|+.++.+. .|+++.|+.+|+++|+|||+|.+.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp TTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe-EEEEEecCCCCCccceEEEEeCCHHHH
Confidence 4556677777776664322 12467789999999999999999998774 699999867999999999999999999
Q ss_pred HHHHH-HcCCcCCCee--EEEE
Q psy3067 81 ELALQ-KHKERIGHRY--IFFT 99 (141)
Q Consensus 81 ~~AL~-k~~~~i~~Ry--IeV~ 99 (141)
++|++ +|+..++||. |.|.
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEE
T ss_pred HHHHHHhcCCccCCCccceEEE
Confidence 99999 6999999986 5554
No 133
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=98.11 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .| +.|+.+|+ +|||+|.++++|++|+++|+..++||.|.|..+..
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVA-SV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEE-EE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeE-EE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 467889999999999999999998774 35 66656777 99999999999999999999999999999987754
No 134
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=97.95 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=64.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. +.++. ++++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRELGSVP--LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred EEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 467889999999999999999998874 66655 4688999999999999999997 699999999999998865
No 135
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.50 E-value=2.1e-14 Score=113.31 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=84.7
Q ss_pred CcCCCCceeEEEEEecHHHH-------HHHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC
Q psy3067 5 RTGEVSDRYIEVFKVRRQEM-------DWKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD 76 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~-------~~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s 76 (141)
+...++.|.|.|-.+..... ..++++|||++ +|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT-FCQLACG-QDGQLKGFAVLEYET 235 (284)
T ss_dssp TTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS-EEEEEEC-SSCCEEEEEEEECSS
T ss_pred CCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE-EEEEEEC-CCCCcccEEEEEeCC
Confidence 45677888888877765442 24678899999 59999999999998773 6999999 799999999999999
Q ss_pred HHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 77 KETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 77 ~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
.++|.+|++ +|+..++||.|.|..+....
T Consensus 236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 999999999 69999999999999987643
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=100.29 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=62.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC-----eeEEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH-----RYIFFT 99 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~-----RyIeV~ 99 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.| |+|||+|.++++|++||+ +|+..|++ |.|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 467889999999999999999997663 5888775 899999999999999999 69999999 999999
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
.+..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9876
No 137
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=3.9e-14 Score=102.98 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=65.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|+++.+ .+|+++|+|||+|.+.++|++|++ +|+..+. +|.|.|..+
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFSSFGQIE-ECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred eEEEcCCCCcCCHHHHHHHHHhCCCEE-EEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 466789999999999999999997773 6999999 789999999999999999999997 6876665 499998765
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-14 Score=98.33 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|++||+++|+.++.+. .|.++.+ ++|+|||+|.++++|++|++ +|+..+++|.|.|..+....
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 45789999999999999999997763 6888876 78999999999999999999 69999999999999987633
No 139
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=6.3e-14 Score=96.36 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.++ +|+|||+|.++++|++|++ +|+..|++|.|.|..+...
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 367789999999999999999997663 57765 3599999999999999998 6999999999999998763
No 140
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.7e-14 Score=107.01 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=65.6
Q ss_pred HHHHhcC----CCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC----HHH----HHHHHH---HcCCc
Q psy3067 26 WKLQHTG----IVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD----KET----AELALQ---KHKER 90 (141)
Q Consensus 26 ~~~~~gL----p~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s----~e~----a~~AL~---k~~~~ 90 (141)
.|+++|| ||++++++|++||+.+|-|. .+.++.||.+|+|+|+|||+|.+ +++ |.+|++ .++..
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~-~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEIS-HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCS-EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 3567899 99999999999999998774 79999999999999999999996 433 788887 38999
Q ss_pred CCCeeEEEEecc
Q psy3067 91 IGHRYIFFTGHR 102 (141)
Q Consensus 91 i~~RyIeV~~ss 102 (141)
|+||.|.|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998764
No 141
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.4e-14 Score=102.19 Aligned_cols=76 Identities=5% Similarity=0.063 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-c--CCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-H--KERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~--~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||+++|+.||.|. +|.|+.+ +|+|||+|++.++|++|++. + +..++||.|.|..+.
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~-~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCC-EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 367789999999999999999998773 6888875 58999999999999999984 4 468999999999987
Q ss_pred hhhccc
Q psy3067 103 YTVQHR 108 (141)
Q Consensus 103 ~~~~~~ 108 (141)
..+..+
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 655443
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=4.1e-14 Score=94.93 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=61.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.+.|. .|++. +++|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~~v~--~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDYDLK--YCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCCC--CEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHhhCCeE--EEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5678999999999999999999443 47773 688999999999999999999 799999999999988755
No 143
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.8e-14 Score=98.64 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||+++|+.|+.+. .|.|+.+ +|+|||+|.+.++|++|++. ++..++||.|.|..+.
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 367789999999999999999998773 5877654 68999999999999999983 4567999999999987
Q ss_pred hhhcc
Q psy3067 103 YTVQH 107 (141)
Q Consensus 103 ~~~~~ 107 (141)
.....
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 64443
No 144
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=2.5e-14 Score=104.92 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=78.6
Q ss_pred CcCCCCceeEEEEEecHHH------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQE------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e 78 (141)
+...++.|.|.|-.+...+ -..++++|||+++|++||+++|+.++- |.++ + .+|+++|+|||+|.+.+
T Consensus 74 ~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~----v~~~-~-~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 74 TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALE----IRLV-S-QDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp GGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSE----EEEE-C-SSSSCCSEEEEECSSHH
T ss_pred CCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCe----EEEe-c-CCCCCceEEEEEECCHH
Confidence 5567788888888775422 235788999999999999999999864 4555 5 89999999999999999
Q ss_pred HHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 79 TAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 79 ~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+|.+|++ +|+..++||.|.|..+..
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999999 699999999999988764
No 145
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-14 Score=102.76 Aligned_cols=74 Identities=5% Similarity=0.063 Sum_probs=63.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~ss 102 (141)
.++++||||++||+||+++|+.||.+. +|.|+.+ +|+|||+|+++++|++|++ .+ +..|+||.|.|..+.
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG~V~-~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHCCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 467899999999999999999998773 6888875 5899999999999999998 44 468999999998887
Q ss_pred hhhc
Q psy3067 103 YTVQ 106 (141)
Q Consensus 103 ~~~~ 106 (141)
....
T Consensus 91 ~~~~ 94 (105)
T 1sjq_A 91 HKEL 94 (105)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6443
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-14 Score=96.63 Aligned_cols=74 Identities=8% Similarity=-0.045 Sum_probs=64.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccE-EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGI-TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I-~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .| .|+.|+.+|+ |||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 467789999999999999999998764 58 5777754444 9999999999999998 799999999999998876
Q ss_pred h
Q psy3067 104 T 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=2.5e-14 Score=96.74 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=65.3
Q ss_pred HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
.++++|||+++|++||+ ++|+.++.+. .|.++. +|+++|+|||+|.+.++|++|++ +|+..++||.|.|..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35778999999999999 9999998663 477653 58899999999999999999998 699999999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 86 a~~ 88 (97)
T 1nu4_A 86 AKT 88 (97)
T ss_dssp CSS
T ss_pred ccC
Confidence 865
No 148
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9e-14 Score=93.27 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.++ +|+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVL-ECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEE-EEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 457789999999999999999997763 57776 4799999999999999997 7999999999999988763
No 149
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=2.4e-14 Score=113.45 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=80.6
Q ss_pred CcCCCCceeEEEEEecHHHH-----------HHHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCC--CCcceee
Q psy3067 5 RTGEVSDRYIEVFKVRRQEM-----------DWKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEA 70 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~-----------~~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~--Gr~~G~a 70 (141)
+...++.|.|.|-.+..... ..++++|||++ +|++||+++|+.++.+. .|+|+.| .+ |+++|+|
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~~~-~~~tg~~~g~a 257 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAG-QKEHSFNNCCA 257 (292)
T ss_dssp TTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSC-CC---CCCEEE
T ss_pred CCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee-EEEEEec-CCcCCCCceEE
Confidence 55667788888876643322 23677899999 99999999999998774 6999998 55 9999999
Q ss_pred EEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 71 YVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 71 fV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
||+|.+.++|++|+.+|+..|+||.|.|..+..
T Consensus 258 fV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 258 FMVFENKDSAERALQMNRSLLGNREISVSLADK 290 (292)
T ss_dssp EEEESSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred EEEeCCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence 999999999999997799999999999998865
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=6.2e-14 Score=119.94 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=70.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.||++|||+++|+++|.++|+.|+.|. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..|+++.|.|..+..
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCee-EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 467789999999999999999998773 69999997899999999999999999999996 699999999999999875
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=5.1e-15 Score=107.91 Aligned_cols=100 Identities=6% Similarity=-0.016 Sum_probs=73.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC----Cccccc-EEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL----EIISNG-ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~----~iv~~~-I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ 100 (141)
.++++|||+++|++||+++|+.+ +++... ..+... ..++++|+|||+|.++++|++|+++|+..+++|.|.|..
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~-~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAV-QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 84 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEE-EEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeee-EecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecC
Confidence 45778999999999999999998 422000 012222 346678999999999999999998899999999999998
Q ss_pred cchhhcccCCC--CCCCCcccCCCCCCC
Q psy3067 101 HRYTVQHRAPR--CETSIPVSSSTHKPG 126 (141)
Q Consensus 101 ss~~~~~~~~~--~~~~lp~~~~~~~~~ 126 (141)
+.......... ++.+||.+.+.+.++
T Consensus 85 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 112 (172)
T 2g4b_A 85 PHDYQPLPGAHKLFIGGLPNYLNDDQVK 112 (172)
T ss_dssp CSSCCCCTTTTCEEEECCCTTCCHHHHH
T ss_pred CcccCCCCCCCEEEEEcCCCcCCHHHHH
Confidence 76533222222 256888877765544
No 152
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=7.5e-14 Score=101.12 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=63.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccE------EEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI------TLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I------~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
++++|||+++|++||+++|+.++.+. .+ .+... .+|+++|+|||+|.+.++|++|++ +|+..++||.|.|.
T Consensus 48 l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 48 IYVKNLAKHVQEKDLKYIFGRYVDFS-SETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHGGGCCTT-CHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCcc-cccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56789999999999999999998663 22 12222 479999999999999999999999 79999999999999
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
.+..
T Consensus 126 ~a~~ 129 (143)
T 3egn_A 126 FARS 129 (143)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8854
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=8.9e-14 Score=97.65 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC--CcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK--ERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~--~~i~~RyIeV~~ss 102 (141)
.++++||||++|++||+++|+.|+.+. .|.|+.+ +|+|||+|.+.++|++|++ ++. ..++||.|.|..+.
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTIC-YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 367789999999999999999998774 5777653 5899999999999999998 443 46999999999987
Q ss_pred hhhc
Q psy3067 103 YTVQ 106 (141)
Q Consensus 103 ~~~~ 106 (141)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6443
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=6.8e-14 Score=98.41 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=61.3
Q ss_pred HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC--CcCCCeeEEEEec
Q psy3067 26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK--ERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~--~~i~~RyIeV~~s 101 (141)
.++++|||| ++|++||+++|+.|+.|. +|.|+.+ +|+|||+|+++++|++|++ +|. ..+.||.|.|..+
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~-~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcCCEE-EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 467899999 999999999999998773 6888876 2799999999999999998 454 4599999999988
Q ss_pred ch
Q psy3067 102 RY 103 (141)
Q Consensus 102 s~ 103 (141)
..
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 155
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=94.34 Aligned_cols=71 Identities=8% Similarity=0.088 Sum_probs=63.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.++.+ +|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCS-EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 467789999999999999999997663 6887754 5899999999999999996 699999999999998866
No 156
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=4.3e-14 Score=93.62 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC----C-------cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL----E-------IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~----~-------iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~R 94 (141)
.++++|||+++|++||+++|+.+ + .+ .+|.+..+ +|+|||+|.++++|++|+.+|+..++||
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v-~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV-LAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE-EEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcc-eEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46788999999999999999998 5 33 24666543 6999999999999999997799999999
Q ss_pred eEEEEe
Q psy3067 95 YIFFTG 100 (141)
Q Consensus 95 yIeV~~ 100 (141)
.|.|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999863
No 157
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-13 Score=93.68 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=62.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC--CeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG--HRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~--~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .|.++.+ +|+|||+|.+.++|++|++ +|+..++ +|.|.|..+.
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 467789999999999999999998763 5777543 6899999999999999998 6999999 9999999886
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
.
T Consensus 92 ~ 92 (97)
T 1why_A 92 S 92 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 158
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=97.27 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=62.8
Q ss_pred CCCCCcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067 1 MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA 80 (141)
Q Consensus 1 ~~~~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a 80 (141)
|||-+-++|-+ |=+.-..... ..++++|||+++|++||++.|+.+|.+. +|.++.+ +|+|||+|++.++|
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~ps--~~l~V~NLp~~~te~~L~~lF~~fG~V~-~v~i~~~------kg~AFVef~~~~~A 70 (100)
T 3r27_A 1 MGHHHHHHMEN-YDDPHKTPAS--PVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMPK------KRQALVEFEDVLGA 70 (100)
T ss_dssp -----------------CCCCC--SEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEETT------TTEEEEEESSHHHH
T ss_pred CCcccccchhc-ccccccCCCC--cEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEEcC------CCEEEEEECCHHHH
Confidence 67777666632 1111111111 1367899999999999999999998774 5887643 58999999999999
Q ss_pred HHHHH-HcCCc--CCCeeEEEEecchhh
Q psy3067 81 ELALQ-KHKER--IGHRYIFFTGHRYTV 105 (141)
Q Consensus 81 ~~AL~-k~~~~--i~~RyIeV~~ss~~~ 105 (141)
++|++ .++.. ++||.|.|.-|+.++
T Consensus 71 ~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 71 CNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp HHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred HHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 99998 46554 899999999887643
No 159
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=6.9e-14 Score=98.67 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=61.0
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee-----EEE
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY-----IFF 98 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry-----IeV 98 (141)
..|+++|||+++|++||+++|+.++.+. .|.|+.| |+|||+|.++++|++||+ +|+..|++|. |.|
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3578899999999999999999997663 5887765 899999999999999999 7999999987 777
Q ss_pred Eecch
Q psy3067 99 TGHRY 103 (141)
Q Consensus 99 ~~ss~ 103 (141)
..+..
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 76655
No 160
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=92.20 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=62.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.++. |+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVI-ECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEE-EEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEE-EEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 467789999999999999999998763 577764 399999999999999998 6999999999999998764
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=100.04 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=63.9
Q ss_pred HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
.++++||||+++++||+ ++|+.||.+. +|.+ . .+|+++|+|||+|.+.++|++|++ +|+..+.||.|.|..
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i--~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDIL-DIVV--D-LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEE--C-CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEe--c-cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 46789999999999976 6999998663 4655 3 578999999999999999999997 699999999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 162
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=9e-14 Score=94.93 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=60.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
++++|||+++|++||+++|+.++.+. +|.++ +++|+|||+|.+.++|++|++ +|+..++||.|.|..+.
T Consensus 30 l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 30 AYIGNIPHFATEADLIPLFQNFGFIL-DFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCCS-EEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred EEEcCCCcccCHHHHHHHHHhCCCEE-EEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 56789999999999999999998773 58876 457999999999999999997 69999999999987664
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=7.6e-14 Score=94.65 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=57.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++||||++|++||+++|+.+|.+. +|.|+.+ ++|+|||+|.++++|+++.. ....+++|.|.|..+..
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~-~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVV-DVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAEP 83 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC-
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcCC
Confidence 457799999999999999999998763 6888775 78999999999999984322 23346799999998865
No 164
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=90.57 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~s 101 (141)
.++++|||+++|++||+++|+.++.+. .|.++.+ +|+|||+|.+.++|++|++ + ++..++||.|.|..+
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQFGEIR-TITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHTTSCEE-EEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred EEEEcCCCCCCCHHHHHHHHHhCCCEe-EEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 457789999999999999999997663 5888764 5899999999999999999 5 889999999998765
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=92.50 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCc-ccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC-CcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEI-ISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK-ERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~i-v~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~-~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++. +. .+.+ +++|+|||+|.+.++|++|++ +|+ ..+++|.|.|..+.
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~-~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLA-GQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCS-SCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceE-EEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4677899999999999999999976 53 4554 246899999999999999998 698 89999999999887
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
..
T Consensus 82 ~~ 83 (93)
T 2cqh_A 82 SK 83 (93)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 166
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=95.27 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=62.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++.+. .|.|+.+ +|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 28 l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 28 VYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 56789999999999999999997663 5888775 6899999999999999996 699999999999998876
No 167
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=1.8e-13 Score=108.02 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=81.2
Q ss_pred CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL 84 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL 84 (141)
+...|+.|.|.|-.++.. ..++++|||+++|++||+++|+.++.+. .|.|+.| .+|+++|+|||+|.+.++|.+|+
T Consensus 79 ~g~~i~g~~l~v~~a~~~--~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 79 DGTILKSRPLRIRFATHG--AALTVKNLSPVVSNELLEQAFSQFGPVE-KAVVVVD-DRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp TTCEETTEECEEEECCCS--SEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEE-TTSCEEEEEEEEESSHHHHHHHH
T ss_pred CCcEECCceeEeeecccC--CcccccCCCCCCCHHHHHHHHHhcCCeE-EEEeeeC-CCCCcCcEEEEEeCCHHHHHHHH
Confidence 556677788888776542 2477889999999999999999997773 6999999 89999999999999999999999
Q ss_pred HH--cCCcCC---CeeEEEEecchh
Q psy3067 85 QK--HKERIG---HRYIFFTGHRYT 104 (141)
Q Consensus 85 ~k--~~~~i~---~RyIeV~~ss~~ 104 (141)
+. ++..+. +|.|.|.++...
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEecCCCceEEEeecccc
Confidence 85 666665 999999998763
No 168
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=2.6e-13 Score=95.03 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=61.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|.++ +|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMK-EVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCC-EEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 357789999999999999999997763 58876 6899999999999999998 699999999999998865
No 169
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.40 E-value=1.1e-13 Score=100.96 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.++.+. .|+|+.| ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLR-SVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEE-EEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 467889999999999999999997763 6888876 57899999999999999998 799999999999988765
No 170
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=90.70 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=61.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.++. |+|||+|.+.++|++|++ +|+..+++|.|.|..+...
T Consensus 12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 12 KLHVGNISPTCTNQELRAKFEEYGPVI-ECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTTSCCC-EEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 357789999999999999999997663 588764 399999999999999997 6999999999999998763
No 171
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.2e-13 Score=91.43 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=60.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.+ +.+. .|.+ ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~-~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVE-RVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEE-EEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46778999999999999999999 5552 3443 35799999999999999999 79999999999999887
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
..
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 172
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.39 E-value=3.6e-13 Score=92.32 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+ ++|++||+++|+.++.+. .|.+. +|+|||+|.+.++|++|++ +|+..++||.|.|..+..
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 357789999 999999999999997663 57762 6899999999999999999 799999999999988764
No 173
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.6e-13 Score=94.57 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+++|++||+++|+.|+.+. .|.|+. .+|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLG-RVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 367789999999999999999998763 577653 45899999999999999998 699999999999988765
No 174
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.5e-13 Score=91.68 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=61.3
Q ss_pred HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+ ++|++||+++|+.++.+. .|.|. +|+|||+|.+.++|++|++ +|+..+.+|.|.|..+..
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 367789999 999999999999998763 57773 6899999999999999999 699999999999998865
No 175
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=4.1e-13 Score=96.16 Aligned_cols=71 Identities=8% Similarity=-0.012 Sum_probs=60.6
Q ss_pred HHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-Hc--CCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KH--KERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~--~~~i~~RyIeV~~s 101 (141)
.++++||||+ +|++||+++|+.|+-|. +|.|+. .+|+|||+|.+.++|++|++ ++ ...|+||.|.|..+
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~-~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcCCEE-EEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 4677999998 99999999999997663 588763 36899999999999999998 34 45799999999988
Q ss_pred ch
Q psy3067 102 RY 103 (141)
Q Consensus 102 s~ 103 (141)
..
T Consensus 100 ~~ 101 (112)
T 1x4f_A 100 EK 101 (112)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 176
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-13 Score=91.98 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
++++|||+++|++||+++|+.++.+. .|.|+.+ ++|+|||+|.++++|++|+.. ...++++.|.|..+...
T Consensus 8 l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTTTSCCC-EEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCee-EEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 56789999999999999999997763 5887764 779999999999999876544 44568999999988653
No 177
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.3e-13 Score=96.63 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=60.5
Q ss_pred HhcCCCCCCHHHHHhhc------------ccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee
Q psy3067 29 QHTGIVEGKKDDIAQFF------------DGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY 95 (141)
Q Consensus 29 ~~gLp~s~te~DI~~FF------------s~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry 95 (141)
..||||++++++|++.| +.+|.|. +|.|+.| .+|+++|+|||+|.++++|++|++ +|+..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~-~v~i~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE-EEEEEeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45778888777776666 9998774 6999999 679999999999999999999998 7999999999
Q ss_pred EEEEec
Q psy3067 96 IFFTGH 101 (141)
Q Consensus 96 IeV~~s 101 (141)
|.|..+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 988654
No 178
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=1.9e-13 Score=108.21 Aligned_cols=117 Identities=10% Similarity=-0.001 Sum_probs=83.8
Q ss_pred CcCCCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELA 83 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~A 83 (141)
+...++.|.|.|-.... ..++++|||+++|+++|+++|+.++ .+ ..|.++.+ ..|+++|+|||+|.+.++|++|
T Consensus 101 ~~~~~~g~~i~v~~~~~---~~l~v~nlp~~~t~~~l~~~f~~~G~~i-~~v~i~~~-~~~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 101 THKVVGQNEIIVSHLTE---CTLWMTNFPPSYTQRNIRDLLQDINVVA-LSIRLPSL-RFNTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp TTCEETTEECEEEECCS---CEEEEECCCTTCCHHHHHHHHHHTTCCC-CEEECC--------CCEEEEECSSHHHHHHH
T ss_pred CCcEeCCcEEEEEECCC---CEEEEECCCCCCCHHHHHHHHHHhCCCe-EEEEEEeC-CCCCcceEEEEEECCHHHHHHH
Confidence 45566777777765532 2457789999999999999999998 66 36999999 6799999999999999999999
Q ss_pred HH-HcCCcCCCeeEEEEecchhhcccCC---------CCCCCCccc-CCCCCCC
Q psy3067 84 LQ-KHKERIGHRYIFFTGHRYTVQHRAP---------RCETSIPVS-SSTHKPG 126 (141)
Q Consensus 84 L~-k~~~~i~~RyIeV~~ss~~~~~~~~---------~~~~~lp~~-~~~~~~~ 126 (141)
++ +|+..+++|.|.|..+......... =++.+||.+ .+.+.+.
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~ 229 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLR 229 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHH
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHH
Confidence 99 7999999999999988653322111 114588887 6655443
No 179
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.37 E-value=3.4e-13 Score=93.64 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=61.7
Q ss_pred HHHHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||++ +|++||+++|+.++.+. .|.| ++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~-~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVA-GCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCS-EEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4678999999 99999999999997763 5776 56899999999999999996 699999999999998864
No 180
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=5.6e-14 Score=104.48 Aligned_cols=75 Identities=8% Similarity=0.058 Sum_probs=61.5
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccE------EEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGI------TLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG 100 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I------~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ 100 (141)
++++|||+++|++||+++|+.++.+. ++ .+... ..++++|+|||+|.++++|++||++|+..+++|.|.|..
T Consensus 7 l~V~nLp~~~te~~l~~~F~~~g~i~-g~~~~~~~~v~~~-~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~ 84 (198)
T 2yh0_A 7 LYVGNIPFGITEEAMMDFFNAQMRLG-GLTQAPGNPVLAV-QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 84 (198)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHH-TCCSSSSCSEEEE-EEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEEC
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhc-ccccCCCCceEEe-EecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeC
Confidence 56789999999999999999983321 11 12222 457789999999999999999998899999999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 85 ~~~ 87 (198)
T 2yh0_A 85 PHD 87 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=2.8e-12 Score=101.02 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCCHHHHH----hhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIA----QFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~----~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
.|+++|||+++|++||+ ++|+.|+.+. .|+++. +|+++|+|||+|.+.++|++|++ +|+..+.+|.|.|..
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 46889999999999977 8999997763 577654 68999999999999999999996 799999999999998
Q ss_pred cch
Q psy3067 101 HRY 103 (141)
Q Consensus 101 ss~ 103 (141)
+..
T Consensus 87 a~~ 89 (282)
T 3pgw_A 87 AKT 89 (282)
T ss_pred ecc
Confidence 754
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=8.8e-12 Score=87.49 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=61.5
Q ss_pred CCHHHHHhhcccCCcccccEEEeecCC-CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067 36 GKKDDIAQFFDGLEIISNGITLVEDPF-NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH 107 (141)
Q Consensus 36 ~te~DI~~FFs~~~iv~~~I~i~~d~~-~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~ 107 (141)
.+++||++.|+.+|.|. +|.|+.|+. +|+++|+|||+|.++++|++|++ +|+..++||.|.|..+......
T Consensus 25 d~~~dl~~~f~~~G~V~-~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVG-KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFR 97 (105)
T ss_dssp -CHHHHHHHGGGGSCEE-EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHH
T ss_pred HHHHHHHHHHHhcCCEE-EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhh
Confidence 47999999999998774 699999843 37999999999999999999998 7999999999999998874443
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.28 E-value=1.7e-12 Score=97.15 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++|||+ ++|++||+++|+.++.+. .|.++.+ . +|+|||+|.++++|++|++ +|+..+++|.|.|..+..
T Consensus 6 l~v~nlp~~~~~~~~l~~~F~~~G~i~-~v~i~~~-~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 6 LLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN-K----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp EEEECCCSSSCCHHHHHHHHHTTCCCS-EEECSTT-C----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 46789999 999999999999997663 6998887 3 7899999999999999998 799999999999998864
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=2.4e-12 Score=99.57 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=64.4
Q ss_pred HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+ ++|++||+++|+.++.+. +|.|+.| . +|+|||+|.++++|++|++ +|+..+.+|.|.|..+..
T Consensus 36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~-~v~i~~~-~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 36 VLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFN-K----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp EEEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCT-T----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEEEEC-C----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 467789999 999999999999997663 6999888 3 7899999999999999997 799999999999998764
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=3.7e-12 Score=98.31 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHHhcCC-CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGI-VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp-~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++||| +++|+++|+++|+.++-|. +|+|+.+ .+|+|||+|.++++|++|++ +|+..+.||.|.|..+..
T Consensus 7 l~V~nL~~~~~~~~~L~~~F~~~G~v~-~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 7 LMVYGLDQSKMNCDRVFNVFCLYGNVE-KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp EEEECCCTTTCCHHHHHHHHTTTSCEE-EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred EEEeCCCcccCCHHHHHHHHHhcCCeE-EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4678999 9999999999999997663 6888876 26899999999999999998 799999999999998864
No 186
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.25 E-value=5.8e-12 Score=95.91 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=62.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGH--RYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~ss 102 (141)
.++++||||++|+++|+++|+.||-|. .|.|..+ +++|+|||+|.+.++|++|++ +|+..|.+ |.|.|..+.
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 345689999999999999999998774 5887543 257999999999999999998 69999954 999999887
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=5.7e-12 Score=99.35 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=71.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++|++||+++|+.++.+. .|.|.. .+|+|||+|.+.++|++|++ .|+..+++|.|.|..+...
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 24 RLFVGNLPTDITEEDFKRLFERYGEPS-EVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHTGGGCCCS-EEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 478899999999999999999998774 587754 36899999999999999998 7999999999999987641
Q ss_pred hcccCCCCCCCCcccCCCCCC
Q psy3067 105 VQHRAPRCETSIPVSSSTHKP 125 (141)
Q Consensus 105 ~~~~~~~~~~~lp~~~~~~~~ 125 (141)
..=++.+||.+.+.+.+
T Consensus 97 ----~~l~v~nl~~~~t~~~l 113 (261)
T 3sde_A 97 ----AALTVKNLSPVVSNELL 113 (261)
T ss_dssp ----SEEEEESCCTTCCHHHH
T ss_pred ----CcccccCCCCCCCHHHH
Confidence 11224567766655443
No 188
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.5e-12 Score=85.00 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++| +++|++||+++|+.++.+. .|.|. +++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 18 l~V~n--~~~t~~~l~~~F~~~G~i~-~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 18 LYVYG--EDMTPTLLRGAFSPFGNII-DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp EEEEC--SSCCHHHHHHHHTTTSCEE-EEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred EEEcC--CCCCHHHHHHHHhhCCCEE-EEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45567 4899999999999997663 57763 577899999999999999996 699999999999998865
No 189
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.5e-11 Score=89.39 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee-eEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE-AYVQFVDKETAELALQ-KHKERIGH--RYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~-afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~s 101 (141)
.++++||||.+|+++|.+.|+.||-|. .|.|.. . +|+ |||+|.+.++|++|++ +|+..|.+ |.|.|..+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~-~v~i~~--~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQ-RIVIFK--R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEE-EEEEEE--S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEE-EEEEEe--C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 456789999999999999999998774 588743 2 286 9999999999999998 79999976 79999988
Q ss_pred chh
Q psy3067 102 RYT 104 (141)
Q Consensus 102 s~~ 104 (141)
...
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 653
No 190
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.23 E-value=1.6e-11 Score=90.14 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=62.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee-eEEEeCCHHHHHHHHH-HcCCcCCC--eeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE-AYVQFVDKETAELALQ-KHKERIGH--RYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~-afV~F~s~e~a~~AL~-k~~~~i~~--RyIeV~~s 101 (141)
.++++||||.+|+++|.+.|+.++.|. .|+|..+ .+|+ |||+|.+.++|++|++ +|+..|.+ +.|.|.-+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~-~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEE-EEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEE-EEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 346789999999999999999998774 6887664 2477 9999999999999998 79999977 99999988
Q ss_pred chh
Q psy3067 102 RYT 104 (141)
Q Consensus 102 s~~ 104 (141)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 191
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.8e-12 Score=92.22 Aligned_cols=70 Identities=3% Similarity=0.049 Sum_probs=58.3
Q ss_pred HHHH--hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-----CCeeEE
Q psy3067 26 WKLQ--HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-----GHRYIF 97 (141)
Q Consensus 26 ~~~~--~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-----~~RyIe 97 (141)
.+++ +||||++|++||+++|+.+|.+. .|.|+.+ +|+|||+|.++++|++|++ +|+..+ +++.+.
T Consensus 27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~-~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 27 SLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHHHSCEE-EEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3566 78999999999999999998774 5766432 5899999999999999998 699877 688888
Q ss_pred EEecc
Q psy3067 98 FTGHR 102 (141)
Q Consensus 98 V~~ss 102 (141)
|..+.
T Consensus 100 v~~a~ 104 (114)
T 2cq2_A 100 LNFVE 104 (114)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 77664
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=86.71 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHhcCCCCCCHHHHH----hhcccCC--cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 27 KLQHTGIVEGKKDDIA----QFFDGLE--IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~----~FFs~~~--iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
++++||||++++++|+ ++|+.|+ |++ | +| |+|||+|.+.++|++|++ +++..+.+|.|.|.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--I-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--E-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4578999999999855 8999995 443 4 45 999999999999999998 69999999999999
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
-+..
T Consensus 80 ~A~~ 83 (96)
T 2diu_A 80 FTPK 83 (96)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 8864
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.19 E-value=6.9e-12 Score=96.77 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=57.6
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR 94 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R 94 (141)
++++|||+++|++||+++|+.++.+ ...|+++.+ . |+++|+|||+|.+.++|.+||. +|+..|+++
T Consensus 126 l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~-~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 126 LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG-K-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC-C-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC-C-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 6678999999999999999999765 236888877 3 6777999999999999999998 699998877
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.17 E-value=1.3e-11 Score=86.49 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=62.6
Q ss_pred CCCCHHHHHhhcccCCcccccEEEeecCCC--CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhccc
Q psy3067 34 VEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQHR 108 (141)
Q Consensus 34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~--Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~~ 108 (141)
|...++||++.|+.+|.|. +|+|+.++.+ ++++|+|||+|.++++|++|++ +|+..++||.|.|..++.....+
T Consensus 25 ~~~~~~dl~~~f~k~G~V~-~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 25 YEEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp HHHHHHHHHHHHHTTSCEE-EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHHccCCEE-EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 4556799999999998774 6999988433 3789999999999999999997 79999999999999887755443
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.17 E-value=3.6e-11 Score=85.89 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++| +++|++||+++|+.|+.+. .|.|. +++|+|||+|.+.++|++|++ +|+..+++|.|.|..+..
T Consensus 42 lfVgn--l~~te~~L~~~F~~~G~I~-~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 42 LYVYG--EDMTPTLLRGAFSPFGNII-DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp EEEEC--SSCCHHHHHHHHSTTCCCS-CEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred EEEcC--CCCCHHHHHHHHHccCCEE-EEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45667 4799999999999997773 58874 567899999999999999996 699999999999998865
No 196
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.16 E-value=3.4e-11 Score=94.78 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=62.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecc
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHR 102 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss 102 (141)
++++|||+++|++||+++|+.++.+. .|+|+.+ . +|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++
T Consensus 210 l~v~nl~~~~~~~~l~~~F~~~G~i~-~v~~~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 210 LFLTNLPEETNELMLSMLFNQFPGFK-EVRLVPG-R----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEeCCCCcCCHHHHHHHHHhcCCeE-EEEEecC-C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 78899999999999999999997663 6888876 2 5899999999999999999 6999999 9999998664
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.15 E-value=2.1e-11 Score=91.16 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=62.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss~ 103 (141)
++.+|||+++|++||+++|+.++ .+. .|+++.+ . +|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++.
T Consensus 123 l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~i~~~-~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 123 LHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK-D----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEECCCCTTCCHHHHHHHHHHTTSCCC-EEEESST-T----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCCce-EEEEEeC-C----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 66789999999999999999998 663 6887665 2 6899999999999999999 7999999 99999987754
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=9.9e-11 Score=84.00 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=60.7
Q ss_pred CHHHHHhhcccCCcccccEEEeecCC----CCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPF----NGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH 107 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~----~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~ 107 (141)
.++||++.|+.||.|. +|+|+.|+. +++++|+|||+|.++++|++|++ +|+..++||.|.|..+......
T Consensus 38 leedl~eef~k~G~V~-~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 112 (118)
T ss_dssp HHHHHHHHHTTTSCEE-EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHHHhccCCEe-EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhcc
Confidence 5799999999998774 699998843 46788999999999999999998 6999999999999988775443
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=6.8e-11 Score=91.37 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=62.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC-CeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG-HRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~-~RyIeV~~ss~ 103 (141)
++++|||+++|++||+++|+.++ .+. .|.++.+ .+|+|||+|.+.++|.+|++ +|+..++ +|.|.|..++.
T Consensus 154 l~V~nlp~~~t~~~l~~~f~~~G~~i~-~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 154 LHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCCEE-EEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEeCCCccCCHHHHHHHHHHcCCCee-EEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 67789999999999999999998 663 5777553 35899999999999999999 7999999 99999988764
No 200
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1e-10 Score=81.78 Aligned_cols=63 Identities=27% Similarity=0.276 Sum_probs=53.9
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
+++||+++|+.++.+. .|.| .| . .++|+|||+|.++++|++|++ +|+..+++|.|.|..+...
T Consensus 39 ~e~~l~~~f~~~G~v~-~v~i-~~-~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 39 IREDLRVECSKFGQIR-KLLL-FD-R--HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHHGGGTSCCS-EEEE-ET-T--CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSC
T ss_pred HHHHHHHHHHccCCEe-EEEE-ec-C--CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 4689999999998774 5755 66 2 389999999999999999997 6999999999999988763
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5e-10 Score=78.26 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 34 VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++|++||+++|+.|+-|. .|.|+ ++++|+|||+|.+.++|++|++. ...+.+|.|.|..+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~-~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVL-NLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEE-EEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEE-EEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccC
Confidence 4578999999999997663 58776 57899999999999999999987 4556789999987654
No 202
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.94 E-value=4.5e-10 Score=89.86 Aligned_cols=71 Identities=17% Similarity=0.062 Sum_probs=61.7
Q ss_pred HHHHhcCCCCC---------CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC----
Q psy3067 26 WKLQHTGIVEG---------KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI---- 91 (141)
Q Consensus 26 ~~~~~gLp~s~---------te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i---- 91 (141)
.++++|||+++ +|++|++.|+.+|.|. +|+|+.+ +|+|||.|.+.++|+.|++ +|++.|
T Consensus 136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~-~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID-RIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE-EEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred eeecCCCChhhhcccccccCcHHHHHHHHHccCCEE-EEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 35678999998 7999999999998774 6888753 6899999999999999997 799999
Q ss_pred --------CCeeEEEEecch
Q psy3067 92 --------GHRYIFFTGHRY 103 (141)
Q Consensus 92 --------~~RyIeV~~ss~ 103 (141)
.+|.|.|.-+..
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp STTGGGGGGSCCCEEEECC-
T ss_pred cccccccCCCCEEEEEEccC
Confidence 899999998865
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=1.4e-09 Score=77.54 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=56.3
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH 107 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~ 107 (141)
.++||++.|+.+|.|. +|.|..+ . ++|+|||+|.++++|++|++ +|+..++||.|.|..+.....+
T Consensus 30 l~edl~~~f~kfG~V~-~v~i~~~-~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVI-HIYVDKN-S---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYH 96 (114)
T ss_dssp HHHHHHHHHTTTTCCS-EEEECTT-C---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHH
T ss_pred HHHHHHHHHhccCCEE-EEEEecC-C---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHH
Confidence 4689999999998774 6887655 2 58999999999999999998 7999999999999998765543
No 204
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=3.3e-08 Score=75.81 Aligned_cols=71 Identities=7% Similarity=0.067 Sum_probs=60.0
Q ss_pred CCHHHHHhhcccCCcccccEEEeec----CCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhhcc
Q psy3067 36 GKKDDIAQFFDGLEIISNGITLVED----PFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTVQH 107 (141)
Q Consensus 36 ~te~DI~~FFs~~~iv~~~I~i~~d----~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~~~ 107 (141)
-.++||++.|+.+|-|. +|.|+.+ +.+|+++|++||+|.+.++|++|++ +|+..++||.|.+..+.....+
T Consensus 141 e~~~dl~~e~~~~G~v~-~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp THHHHHHHHHTTTSCEE-EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHccCCeE-EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 36789999999998774 6888855 2345999999999999999999998 7999999999999988765543
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=1.1e-08 Score=85.61 Aligned_cols=58 Identities=3% Similarity=0.079 Sum_probs=47.7
Q ss_pred HHHhc--CCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC
Q psy3067 27 KLQHT--GIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI 91 (141)
Q Consensus 27 ~~~~g--Lp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i 91 (141)
++++| |+|.+||+||++.|+.+|-|. +|.+.. .+|+|||+|.+.++|++|++ +|+..+
T Consensus 21 l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 21 LVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp EEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 44544 799999999999999998774 565532 35899999999999999998 688766
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.1e-07 Score=67.51 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=55.7
Q ss_pred HHhcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCC-HHHHHHHHHH---cCCcCCCeeEEEEecc
Q psy3067 28 LQHTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVD-KETAELALQK---HKERIGHRYIFFTGHR 102 (141)
Q Consensus 28 ~~~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s-~e~a~~AL~k---~~~~i~~RyIeV~~ss 102 (141)
+.+||+++ +|++||+++|+.++-|. .|.++.+ .. +|||.|.+ +++|.+|++. ++-.|.+..+.+...+
T Consensus 22 ~v~~l~~~~~sredLke~F~~~G~V~-~Vd~~~g----~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 22 KFSGDLDDQTCREDLHILFSNHGEIK-WIDFVRG----AK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCCEE-EEECCTT----CS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEecCCCCcCCHHHHHHHHHhcCCEE-EEEEecC----CC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 34789999 99999999999997663 5777666 22 49999999 8899999985 3678888888887766
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
-
T Consensus 95 G 95 (121)
T 1owx_A 95 G 95 (121)
T ss_dssp H
T ss_pred C
Confidence 4
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=4.6e-07 Score=62.87 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.+|.+-|+.||-+ ..|+++.| .+||+|.+.++|.+|+++|+..++||.|.|..+++
T Consensus 30 ~~L~~~F~~~G~V-i~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEV-ILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCE-EEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCe-EEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 6799999999844 24898887 28999999999999999999999999999999875
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=1.3e-06 Score=61.02 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
.+|.+-|+.||.+ ..|+++.| + +||+|.+.++|.+||++|+..+++|.|.|..-+
T Consensus 39 ~~L~~~F~~~G~V-ilvr~v~d-~-------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTI-VLVRINQG-Q-------MLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCC-SEEEEETT-E-------EEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCE-EEEEEecC-c-------EEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 5699999999744 25999998 2 999999999999999999999999999998644
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00029 Score=50.67 Aligned_cols=74 Identities=27% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHHHHHHHh-------------cCCCCCCHHHHHhhcccC-----C-cccccEEEeecCCCCCcceeeEEEeCCHHHHH
Q psy3067 21 RQEMDWKLQH-------------TGIVEGKKDDIAQFFDGL-----E-IISNGITLVEDPFNGRPTGEAYVQFVDKETAE 81 (141)
Q Consensus 21 ~~d~~~~~~~-------------gLp~s~te~DI~~FFs~~-----~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~ 81 (141)
.+|+..++.+ +||-++++.-|+.|.+++ + +++ |.+.-| ..| |.|+|.+..+|-
T Consensus 5 RqeVk~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--I~L~pD-H~G-----Aivef~d~~~Ag 76 (117)
T 2l9w_A 5 RNEVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--ILLVSD-FNG-----AIIIFRDSKFAA 76 (117)
T ss_dssp HHHHHHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--EEEETT-TTE-----EEEECSCHHHHH
T ss_pred HHHHHHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--EEEecC-CCc-----eEEEEccchhhH
Confidence 4666666663 689999999999999998 5 433 777777 443 999999998886
Q ss_pred HHH-HHcCCcCCCeeEEEEecc
Q psy3067 82 LAL-QKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 82 ~AL-~k~~~~i~~RyIeV~~ss 102 (141)
+|. +.|+..+++|.|.+-...
T Consensus 77 KasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp HHHHHHSSEEETTEEEEEECHH
T ss_pred HHHhhcCCeeecCeEEEecCHH
Confidence 666 789999999999876543
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.15 E-value=0.00021 Score=51.44 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=31.2
Q ss_pred EEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEE
Q psy3067 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFT 99 (141)
Q Consensus 55 I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~ 99 (141)
+.|+.+. .+++|+|||+|.++++|++|++. +.....+..+.+.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~ 46 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD 46 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc
Confidence 6777872 37999999999999999999974 4443333333333
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.014 Score=42.01 Aligned_cols=64 Identities=17% Similarity=0.003 Sum_probs=47.4
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCC-eeEEEEecc
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGH-RYIFFTGHR 102 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~-RyIeV~~ss 102 (141)
|.|-+. ...|.+.|+.|+.+ +..... . ....-+|.|+++.+|++||++|+..+++ =-|-|.+|.
T Consensus 31 GFp~~~-~~~VL~~F~~~G~I---v~~~~~-~---~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 31 GFPQAS-ASYILLQFAQYGNI---LKHVMS-N---TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CCCGGG-HHHHHHHHHTTSCE---EEEEEC-S---SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCHHH-HHHHHHHHHhhCcE---EEeccC-C---CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 555443 47788999999644 222222 1 2357999999999999999999999986 458999985
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.01 Score=41.84 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=54.9
Q ss_pred HHHhcCCCCCCHHHHHhhcccC-----CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGL-----EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~-----~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
|.+.|||-++.++-|.-||+.- +.+. +|. ++ + +-|.|.|.+.+.|++.|++..+.+.+-.|.|++.
T Consensus 11 I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~--~~---~---~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 11 VEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQ--RL---G---CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEE--EE---T---TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred EEEECCCCCCChhHheEEEeCCCcCCCceee-EEE--Ec---C---CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 4457999999999999999973 3332 233 23 2 5799999999999999999899999999999997
Q ss_pred ch
Q psy3067 102 RY 103 (141)
Q Consensus 102 s~ 103 (141)
..
T Consensus 82 ~~ 83 (104)
T 2dhx_A 82 PP 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.80 E-value=0.02 Score=40.08 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=41.4
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
+.|-+..-.||.+.|++|+-+. |..+-| -.|||.|.+++.|..||..
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~--I~WidD-------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCC--CEEEET-------TEEEEECSCHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEE--EEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 6799999999999999997554 888888 2699999999999999983
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.65 E-value=0.0047 Score=44.05 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCcceeeEEEeCCHHHHHHHHH-H-cCCcCCCeeEEEEecch
Q psy3067 63 NGRPTGEAYVQFVDKETAELALQ-K-HKERIGHRYIFFTGHRY 103 (141)
Q Consensus 63 ~Gr~~G~afV~F~s~e~a~~AL~-k-~~~~i~~RyIeV~~ss~ 103 (141)
..+..|+++|+|.++++|++|++ + |+..++| .|.+..++.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 34789999999999999999996 6 8999999 999987764
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.06 E-value=0.014 Score=42.79 Aligned_cols=71 Identities=7% Similarity=0.014 Sum_probs=48.2
Q ss_pred cCCCCCCHHHHHhhcccCC-cccccEEEeec--------CCCCC-----cceeeEEEeCCHHHHHHHHHHcCCcCCCeeE
Q psy3067 31 TGIVEGKKDDIAQFFDGLE-IISNGITLVED--------PFNGR-----PTGEAYVQFVDKETAELALQKHKERIGHRYI 96 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d--------~~~Gr-----~~G~afV~F~s~e~a~~AL~k~~~~i~~RyI 96 (141)
|-|-+ ...-|.+.|+.|| |++ .+....+ +..-+ ...-..|.|+|+.+|++||.+|++.++|--|
T Consensus 14 GFp~~-~~~~VI~~Fs~~G~IlE-~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mI 91 (132)
T 3p3d_A 14 GYPET-MANQVIAYFQEFGTILE-DFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLL 91 (132)
T ss_dssp CCCGG-GHHHHHHHHGGGSCBCS-CCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEEC
T ss_pred ecCHH-HHHHHHHHHHhhceEee-eccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEE
Confidence 44433 3456778889995 443 2322110 00011 2345689999999999999999999999999
Q ss_pred EEEecch
Q psy3067 97 FFTGHRY 103 (141)
Q Consensus 97 eV~~ss~ 103 (141)
-|.+++.
T Consensus 92 GV~Py~~ 98 (132)
T 3p3d_A 92 GVIPYTK 98 (132)
T ss_dssp EEEECCH
T ss_pred EEEECCH
Confidence 9999975
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.76 E-value=0.021 Score=40.07 Aligned_cols=47 Identities=28% Similarity=0.402 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
+.|-+..-.||.+.|++|+-+. |..+-| -.|||.|.+++.|..||..
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~--I~WidD-------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD-------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEE--EEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred eCChhhhhHHHHHHHhccCCEE--EEEEcC-------CeEEEEecCHHHHHHHHHh
Confidence 6799999999999999997553 888887 2699999999999999984
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=87.78 E-value=0.54 Score=31.90 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=44.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHHH-cCCc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG--RPTGEAYVQFVDKETAELALQK-HKER 90 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~k-~~~~ 90 (141)
++++|.||.+.||++..+-++++.-. +....+..+.+. ..-.-|||.|.+.+++..-.++ |++.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~-d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEH-DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCE-EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccc-eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 35679999999999999999987533 233333321111 2334699999999998887774 6653
No 218
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=80.27 E-value=1.4 Score=29.90 Aligned_cols=31 Identities=48% Similarity=0.821 Sum_probs=26.4
Q ss_pred CCcCCCCceeEEEEEecHHHHHHHHHhcCCC
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEMDWKLQHTGIV 34 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~ 34 (141)
.|++.|+.|+|+|..++.+|+++++.+.-|-
T Consensus 80 ~~g~~~~gr~i~V~~a~~~~~~~~~~~~~~~ 110 (118)
T 2db1_A 80 KDRESMGHRYIEVFKSHRTEMDWVLKHSGPN 110 (118)
T ss_dssp GTTEEETTEEEEEEEECHHHHHHHHHTTSSC
T ss_pred cCCCeECCeEEEEEECCHHHHHHHHHHhCCC
Confidence 4678899999999999999999988865543
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=76.89 E-value=1.3 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=41.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCc------ceeeEEEeCCHHHHHHHHHH-cCC
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRP------TGEAYVQFVDKETAELALQK-HKE 89 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~------~G~afV~F~s~e~a~~AL~k-~~~ 89 (141)
++++|.||-+.||++..+-++++-. +-..+- ..|+. -.-|||.|.+++++..-.++ ++.
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~----~d~~~f-v~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPA----HDYFEF-FAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSS----EEECCC-CCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCc----cceEEE-eCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 6788999999999998877777532 222222 22321 23589999999999888875 554
No 220
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=75.26 E-value=1.6 Score=28.90 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=25.2
Q ss_pred CCcCCCCceeEEEEEecHHHHHHHHHhcC
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEMDWKLQHTG 32 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~gL 32 (141)
.|++.|+.|+|+|..++..++.+.+.+..
T Consensus 74 ~~~~~~~gr~i~V~~a~~~~~~~~~~~~~ 102 (107)
T 2lmi_A 74 KHRMYMGQRYVEVYEINNEDVDALMKSLQ 102 (107)
T ss_dssp TTTCCSSSSCCCCEECCHHHHHHHHHTTC
T ss_pred hCcceeCCeEEEEEECCHHHHHHHHHhhc
Confidence 47789999999999999999988887654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.85 E-value=4.8 Score=34.69 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=38.4
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
+.|-.+...||.+.|+.++-+. |+.+-| + -|||.|.+.+.|..||+.
T Consensus 446 ~f~~~~~~~~i~~~fs~fg~v~--V~widd--t-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 446 TFPKEWKTSDLYQLFSAFGNIQ--ISWIDD--T-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp ECCTTCCHHHHHHHGGGGCCCE--EEECSS--S-----EEEEECSCHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHhcCCEE--EEEEcC--C-----eEEEEECCHHHHHHHHHH
Confidence 4666778899999999998553 776665 2 499999999999999984
No 222
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=73.32 E-value=1.9 Score=37.23 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHc
Q psy3067 32 GIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKH 87 (141)
Q Consensus 32 Lp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~ 87 (141)
.|-..+++++.++|+.+|.|. ++++-. ..| -+|-|+|.+.++++.++...
T Consensus 60 ~~~~~~~~~l~~y~~~~g~i~-~~~~~~--~~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 60 CPEKISENKFLKYLSQFGPIN-NHFFYE--SFG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp ECCC---CHHHHHHGGGSCCC-CEEEEC--SSS---EEEEEECC---CCHHHHSSC
T ss_pred cCCCCCHHHHHHHHHhcCCcc-eEEEEc--cCC---eEEEEEeCCHHHHHHHHhcc
Confidence 588899999999999999885 566544 344 69999999999999887643
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.23 E-value=3.4 Score=31.19 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=37.0
Q ss_pred CHHHHHhhc--ccCCcccccEEEeecCCCCCcceeeEEEeCCH-HHHHHHHHHcC
Q psy3067 37 KKDDIAQFF--DGLEIISNGITLVEDPFNGRPTGEAYVQFVDK-ETAELALQKHK 88 (141)
Q Consensus 37 te~DI~~FF--s~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~-e~a~~AL~k~~ 88 (141)
+..++++.| ++|.++. |+.+++ ..| .+|.|-|.|.+. .-...|++.++
T Consensus 34 s~~~l~~~~~~~~F~p~k--v~~l~~-~~G-h~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTR--VRPLWN-YLG-HSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp CSHHHHHHHHHTTCCCSE--EEEEEC-SSB-EEEEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCce--eEeccc-CCC-CceeEEEEecCChHHHHHHHHHHH
Confidence 457899988 9999886 999998 666 889999999965 45566665433
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.09 E-value=2.7 Score=28.51 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=21.6
Q ss_pred CCcCCCCceeEEEEEecHHHHHHHHHhcCC
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEMDWKLQHTGI 33 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp 33 (141)
.|++.|+.|+|+|+.++..++. ..+|..
T Consensus 75 ~~~~~~~gr~i~V~~a~~~~~~--~~~g~~ 102 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPATERQWV--AAGGHI 102 (109)
T ss_dssp TTTEEETTEEEEEEECCHHHHH--HHHCCC
T ss_pred cCCCeECCeEEEEEECCccchh--hcCCcc
Confidence 4788999999999999988763 344543
No 225
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.78 E-value=6.5 Score=27.28 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+.+++.|..+.... ....... . .=.-|.|.++++|.+|-. .|+..+.|+.|.|+-+..
T Consensus 25 ~~~e~Lf~~~~~~~-tF~~lkS-F-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 25 AKFESLFRTYDKDT-TFQYFKS-F-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHHTTCSSC-EEEEETT-T-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHhhCcCc-ceeecCc-c-----eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 56788888885441 2444443 1 146899999999999987 599999999999998763
No 226
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.20 E-value=20 Score=23.86 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCcCCCCceeEEEEEecHHHHHHH
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEMDWK 27 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~~~~ 27 (141)
.|...|+.|+|+|..++.+++...
T Consensus 86 ~~g~~~~gr~i~V~~a~~~~~~~~ 109 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITKKGMLEK 109 (124)
T ss_dssp SCSBCSTTSCBEEEEECHHHHHHH
T ss_pred hCCCeECCcEEEEEECCHHHHHHH
Confidence 467899999999999999998544
No 227
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=39.68 E-value=35 Score=23.56 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEeec---CCCCCcceeeEEEeCCHHHHHH
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVED---PFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~d---~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
-+.+..||++-.... ++-++-|.+-.- --.|+++|+|.| +.|.+.|++
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 366889999888865 654433433211 124699999977 677777654
No 228
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=34.52 E-value=23 Score=25.23 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=29.0
Q ss_pred HhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 42 AQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 42 ~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
.+||.++ .+++ +|+|... .+| .+|.|...|.++....+
T Consensus 4 IQF~~Gi~E~~vp-dVrLtRs-rdg-~~g~A~f~F~~p~al~~ 43 (120)
T 2kvo_A 4 IQFSKGVAETVVP-EVRLSKS-KNG-QSGMAKFYFLEPTILAK 43 (120)
T ss_dssp EESSSSCCCCCCC-EEEEEEC-TTS-CSEEEEEEEESCGGGTS
T ss_pred EEEecCCCCCcCC-ceEEEEc-ccC-CccEEEEEECCchhccc
Confidence 3799998 3454 6999998 566 67899999999965544
No 229
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=34.46 E-value=34 Score=23.40 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEeec---CCCCCcceeeEEEeCCHHHHHHHHHHc
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVED---PFNGRPTGEAYVQFVDKETAELALQKH 87 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~d---~~~Gr~~G~afV~F~s~e~a~~AL~k~ 87 (141)
-+.+..||++-.... ++-++-|.+-.- --.|+++|+|.| +.|.+.|++--.++
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Epky 84 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQEY 84 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCchh
Confidence 456888999888864 554433333111 124699999976 67776665544333
No 230
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=34.21 E-value=34 Score=23.48 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=30.7
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEee--c-CCCCCcceeeEEEeCCHHHHHH
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVE--D-PFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~--d-~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
-+.+..||++-.... ++-++-|.+-. . --.|+++|+|.| +.|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 467889999888865 55443333311 1 124799999976 677776654
No 231
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI P0AB26, structural genomics, PSI- 2, protein structure initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Probab=33.70 E-value=15 Score=27.56 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCCCcCCCCceeEEEEEecHHHHHHHHHhcCCCCC
Q psy3067 1 MGHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEG 36 (141)
Q Consensus 1 ~~~~~~~~ig~RyIEv~~~~~~d~~~~~~~gLp~s~ 36 (141)
|||.|-|+----|.-.|.+|++|++..+..-+|++-
T Consensus 1 ~~~~~~~~~~~~~~~~ysiSE~elq~yL~k~~~~~~ 36 (178)
T 3eyr_A 1 MGHHHHHHSHMNQLTQYTITEQEINQSLAKHNNFSK 36 (178)
T ss_dssp --------CCCSCSSEEEEEHHHHHHHHHHHCCCEE
T ss_pred CCcccccccccccceeeeECHHHHHHHHHHhCChhh
Confidence 788777776667888999999999988887777753
No 232
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.02 E-value=74 Score=19.41 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCHHHHHhhcccC-CcccccEEE--eecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 35 EGKKDDIAQFFDGL-EIISNGITL--VEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 35 s~te~DI~~FFs~~-~iv~~~I~i--~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.++..||..++..- ++-.++|-- +.| .+.||+.... .++++++ ..+..+.+|.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 34667888888754 544433322 233 3899999887 4567776 4777889998887655
No 233
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=28.42 E-value=59 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=28.0
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
.-++|++||..|...+ .||. ..+-.|.+.+.|.+.++.
T Consensus 131 ~l~~i~~fF~~YK~le----------~gK~--v~v~gw~~~~~A~~~I~~ 168 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE----------KGKW--VKVTGWGDKVKAETLIKE 168 (173)
T ss_dssp HHHHHHHHHHHTTTTS----------TTCC--EEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc----------CCCc--EEEccCcCHHHHHHHHHH
Confidence 4578999999997653 2544 355678899888888764
No 234
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.74 E-value=87 Score=22.51 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=31.3
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEeec----CCCCCcceeeEEEeCCHHHHHH
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVED----PFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~d----~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
-+.+..||++-+... ++-++-|.+ .. --.|+++|+|.| +.|.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV-~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSV-FGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEE-EEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEE-EeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 367899999999765 654433433 22 124699999987 577766654
No 235
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.96 E-value=91 Score=22.82 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEeecC---CCCCcceeeEEEeCCHHHHHH
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVEDP---FNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~d~---~~Gr~~G~afV~F~s~e~a~~ 82 (141)
-+.+..||++-+... ++-++-|.+-.-+ -.|+++|+|.| +.|.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 366888999988874 6544444432221 13699999987 577777654
No 236
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=25.71 E-value=34 Score=23.23 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhcccC-CcccccEEEeecCC----CCCcceeeEEEeCCHHHHHH
Q psy3067 34 VEGKKDDIAQFFDGL-EIISNGITLVEDPF----NGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 34 ~s~te~DI~~FFs~~-~iv~~~I~i~~d~~----~Gr~~G~afV~F~s~e~a~~ 82 (141)
-+.+..||++-.... ++-+ ++.++..-. .|+++|+|.| +.|.+.|++
T Consensus 29 ~tpsk~eirekLA~~~~~~~-~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDK-ELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-TTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCC-CEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 356888888888765 4433 344443312 3699999987 455544443
No 237
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=23.85 E-value=81 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=27.7
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
.-++|++||..|...+ .|+. ...-.|.+.+.|.+.++.
T Consensus 127 ~l~~i~~fF~~YK~le----------~gK~--v~~~gw~~~~~A~~~I~~ 164 (173)
T 1qez_A 127 TKNKIVHFFEHYKELE----------PGKY--VKISGWGSATEAKNRIQL 164 (173)
T ss_dssp HHHHHHHHHHHTTTTS----------TTCC--EEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc----------CCCc--eEEccccCHHHHHHHHHH
Confidence 4578999999997653 2544 345668899988888764
No 238
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=23.53 E-value=42 Score=18.92 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=8.4
Q ss_pred CCCCCHHHHHh
Q psy3067 33 IVEGKKDDIAQ 43 (141)
Q Consensus 33 p~s~te~DI~~ 43 (141)
+|.+|++||+.
T Consensus 4 ~~~Vte~DIr~ 14 (36)
T 2l2l_B 4 AFIVTDEDIRK 14 (36)
T ss_dssp CCCCCHHHHHH
T ss_pred eeeeCHHHHHH
Confidence 57788888875
No 239
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=23.45 E-value=1.6e+02 Score=19.25 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=24.6
Q ss_pred EEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcC
Q psy3067 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHK 88 (141)
Q Consensus 55 I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~ 88 (141)
..++.| .+|+-.. .++...+.++..++|++..
T Consensus 112 ~~~lid-~~G~i~~-~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 112 WTFVVD-REGKVVA-LFAGRAGREALLDALLLAG 143 (154)
T ss_dssp EEEEEC-TTSEEEE-EEESBCCHHHHHHHHHHTT
T ss_pred EEEEEC-CCCCEEE-EEcCCCCHHHHHHHHHhcc
Confidence 567778 7887664 6677789999999998653
Done!