RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3067
(141 letters)
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 33.3 bits (75), Expect = 0.003
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 60 DPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
NG+ TGE +V+F ++ + AL +HK+ +G+R+I
Sbjct: 53 YGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 89
Score = 23.3 bits (49), Expect = 9.9
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 8 EVSDRYIEVFKVRRQEMDWKLQ 29
+ +R+I+V + ++ M K+
Sbjct: 83 YMGNRFIQVHPITKKGMLEKID 104
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 33.0 bits (75), Expect = 0.003
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHR 94
+ +I + F + + G G +V F+ K+ A+ A H + R
Sbjct: 21 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 80
Query: 95 YI 96
+
Sbjct: 81 RL 82
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 29.2 bits (65), Expect = 0.050
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
K D+ +F + + DP GR G +V F + E+ + + + + ++ + I
Sbjct: 13 KKDLKDYFSKFGEVVDCTL-KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVI 70
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.8 bits (64), Expect = 0.080
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ D+ ++F + +D G G +V+F + ET + + G
Sbjct: 22 EQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRW 77
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.2 bits (62), Expect = 0.14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 60 DPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+GR TGEA V+F E A A+ K K + HRY+
Sbjct: 48 IGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.9 bits (59), Expect = 0.32
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 61 PFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ G ++ F ++E + ++K +G
Sbjct: 35 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKC 70
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 26.4 bits (58), Expect = 0.46
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 65 RPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++++ K A AL K G +
Sbjct: 37 NTGNWMHIRYQSKLQARKALSKDGRIFGESIM 68
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.8 bits (56), Expect = 0.68
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+D+ +F+ + + + + D R G +V F ++ E + H I ++ +
Sbjct: 13 VEDVKHYFEQFGKVDDAMLMF-DKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV 70
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.5 bits (58), Expect = 0.81
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 54 GITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYI 96
I + G AYV + D A+ A + +RY+
Sbjct: 33 PIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYL 76
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.7 bits (56), Expect = 1.0
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 61 PFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYI 96
G G A+ ++VD + A+ + ++G + +
Sbjct: 37 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 73
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 81
Score = 25.4 bits (55), Expect = 1.1
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 52 SNGITLVEDPFNGRPT 67
++ I + ++PF+G P
Sbjct: 63 TDSIKVADEPFDGDPN 78
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 25.8 bits (56), Expect = 2.2
Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 29/112 (25%)
Query: 9 VSDRYI-EVFKVRRQEMDWKL----QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN 63
V ++ + +V K +++ +WK+ Q + ++ +I++ GIT+VED
Sbjct: 7 VGEKIMHDVIKKVKKKGEWKVLVVDQLS------MRMLSSCCKMTDIMTEGITIVEDINK 60
Query: 64 GR-------------PTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102
R P+ E V + + + K++ ++FFT
Sbjct: 61 RREPLPSLEAVYLITPS-EKSVHSLISDFKDPPTAKYRA----AHVFFTDSC 107
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 25.0 bits (54), Expect = 4.4
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 29/112 (25%)
Query: 9 VSDRYI-EVFKVRRQEMDWKL----QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN 63
V ++ + +V ++ +WK+ Q + ++ EI+S GITLVED
Sbjct: 6 VHEKIMNDVVLAVKKNAEWKVLIVDQLS------MRMVSACCKMHEIMSEGITLVEDINR 59
Query: 64 GR-------------PTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102
R PT E V+ + + +++ +IFFT
Sbjct: 60 RREPLPLLEAVYLITPT-EESVKCLMADFQNPDNPQYRG----AHIFFTEAC 106
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 24.7 bits (54), Expect = 4.5
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 25 DWKLQHTGIVEGKKDDIAQFFD---------GLEIISNGITLVEDPF-----NGRPTGEA 70
D GI GK L++ ++ TL++DP + R G+A
Sbjct: 149 DLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQA 208
Query: 71 YVQFVDK 77
Y +D+
Sbjct: 209 YDDLLDE 215
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 24.4 bits (53), Expect = 5.1
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 28 LQHTGIVEGKKDDIAQFF---DGLEIISNGITLVEDPFNGRPTGEAYVQFVD 76
L +++ ++IA+F +GL + G L E A+V +
Sbjct: 22 LVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHE 73
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 24.7 bits (53), Expect = 5.2
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 21/64 (32%)
Query: 49 EIISNGITLVEDPFNGR-------------PTGEAYVQFVDKETAELALQKHKERIGHRY 95
+++ GIT+ R PT E +D +L K+ E Y
Sbjct: 65 DLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKEN----IDIIVNDLKSDKYSE----FY 116
Query: 96 IFFT 99
I FT
Sbjct: 117 INFT 120
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 24.3 bits (53), Expect = 6.5
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 48 LEIISNGITLVEDPF-----NGRPTGEAYVQFVDK 77
+++ ++ I L++DPF R + Y +D+
Sbjct: 183 IDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDE 217
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.424
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,116
Number of extensions: 24884
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 22
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)