BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3068
(152 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|126328016|ref|XP_001371380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 468
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 5/110 (4%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV- 81
CF R+ + +G GD W P H VHMRGLP++ E DI DFFSP+ PV
Sbjct: 254 CFG--RYLNYYLAMSGHSYGDSWSTFHQSPAGHYVHMRGLPYKATENDICDFFSPLKPVG 311
Query: 82 -YVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
Y++I +GR +GEADV FATHEDA+ AMSKD+ N++HRYIELFLNS++
Sbjct: 312 AYIEIG-SDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYIELFLNSTT 360
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 5/78 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPFR N+++IV FFS ++P + + ++++ GR SGEA V FA+ E A +A+ K
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQ-GRNSGEAFVQFASQEIAEKALKK 171
Query: 113 DRTNIRHRYIELFLNSSS 130
+ I HRYIE+F +S +
Sbjct: 172 HKERIGHRYIEIFKSSQA 189
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + DI FFS ++ I + GRPSGEA V + ++ A
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHF-IYTREGRPSGEAFVELESEDEVTLA 70
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 71 LKKDRETMGHRYVEVF 86
>gi|383858866|ref|XP_003704920.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Megachile rotundata]
Length = 412
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYF 100
GD W G G H++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV F
Sbjct: 282 GDAW---GGGSGIHSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEF 338
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLN 127
ATHE+AM+AMSKD++++ HRYIELFLN
Sbjct: 339 ATHEEAMKAMSKDKSHMSHRYIELFLN 365
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 49 SSGPGHH-----TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEAD 97
S+G G H V +RGLP+ +I+ FFS V++ ++ + GRPSGEA
Sbjct: 2 SNGSGDHEDEGYVVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMS-REGRPSGEAY 60
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V T ED +A +DR ++ HRYIE+F
Sbjct: 61 VEMDTPEDIEKACKRDRDHMGHRYIEVF 88
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 15/89 (16%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLPF ++++I FFS ++P + + +Y GR +GEA V F + A +A+
Sbjct: 114 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDY-TGRSTGEAYVQFVNKDVAERALQ 172
Query: 112 KDRTNIRHR----------YIELFLNSSS 130
K + I HR YIE+F ++ S
Sbjct: 173 KHKEKIGHRWGTDXLAGFGYIEIFRSTLS 201
>gi|126328002|ref|XP_001371131.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 466
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 67/90 (74%), Gaps = 3/90 (3%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVY 99
GD W + P H VHMRGLP++ E DI DFFSP+ PV Y++I +GR +GEADV
Sbjct: 269 GDSWSTFNQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIG-PDGRVTGEADVE 327
Query: 100 FATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
FATHEDA+ AMSKD+ N++HRYIELFLNS+
Sbjct: 328 FATHEDAVAAMSKDKANMQHRYIELFLNST 357
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 55/78 (70%), Gaps = 5/78 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPFR N+++IV FFS ++P + + ++++ GR SGEA V FA+ E A +A+ K
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQ-GRNSGEAFVQFASQEIAEKALKK 171
Query: 113 DRTNIRHRYIELFLNSSS 130
++ I HRYIE+F +S +
Sbjct: 172 NKETIGHRYIEIFKSSQA 189
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD-----INYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + DI FFS + + + + G+ SGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSEDEITLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F +S+
Sbjct: 72 KKDRETMGHRYVEVFRSSN 90
>gi|321466664|gb|EFX77658.1| hypothetical protein DAPPUDRAFT_198258 [Daphnia pulex]
Length = 397
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
H +HMRGLPFR +E DI +FF P+ PV + I Y+ GR SGEADV FATHEDA++AMS+D+
Sbjct: 307 HRIHMRGLPFRASEDDIAEFFHPLHPVAIHIGYEQGRASGEADVEFATHEDAVRAMSRDK 366
Query: 115 TNIRHRYIELFLNSS 129
N++HRYIELFLNS+
Sbjct: 367 CNMQHRYIELFLNST 381
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 36 FAGPRPGDRWVNESSGPGHHT---------VHMRGLPFRVNEKDIVDFFS--PVVP--VY 82
F R W+ + SGP + V +RGLPF ++++I FF+ +VP +
Sbjct: 82 FRSKRSEMEWMVKRSGPPNAAAPSSDDDCFVRLRGLPFGCSKEEIAQFFTGLEIVPNGIT 141
Query: 83 VDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+ +Y +GR +GEA + FAT A +A+ K + I HRYIE+F +S S
Sbjct: 142 LPTDY-SGRSTGEAYIQFATSALAERALEKHKEKIGHRYIEIFRSSLS 188
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFF--SPVV--PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ V + DI+ FF S +V + + Y + GRP+GE + ++ ED +A+
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+K ++ RYIE+F + S
Sbjct: 68 TKHNEHLGPRYIEVFRSKRS 87
>gi|197246805|gb|AAI68807.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 413
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV FATHEDA+ AMSKD
Sbjct: 282 HFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 341
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ N++HRYIELFLNS++ GG G +SR L
Sbjct: 342 KNNMQHRYIELFLNSTAG-GGAGMGCYSRDGL 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
TV +RGLPF ++++IV FFS +VP + + ++Y+ GR +GEA V FA+ E A A+
Sbjct: 106 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 164
Query: 112 KDRTNIRHRYIELFLNSSS 130
K + I HRYIE+F +S S
Sbjct: 165 KHKERIGHRYIEIFKSSRS 183
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ ++++++FFS ++ I++ K GRPSGEA + T ED +A+
Sbjct: 7 VRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKALE 66
Query: 112 KDRTNIRHRYIELF 125
KDR + HRYIE+F
Sbjct: 67 KDRKYMGHRYIEVF 80
>gi|188528963|ref|NP_001120907.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus
(Silurana) tropicalis]
gi|183986477|gb|AAI66302.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV FATHEDA+ AMSKD
Sbjct: 282 HFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 341
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ N++HRYIELFLNS++ GG G +SR L
Sbjct: 342 KNNMQHRYIELFLNSTAG-GGAGMGCYSRDGL 372
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
TV +RGLPF ++++IV FFS +VP + + ++Y+ GR +GEA V FA+ E A A+
Sbjct: 106 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 164
Query: 112 KDRTNIRHRYIELFLNSSS 130
K + I HRYIE+F +S S
Sbjct: 165 KHKERIGHRYIEIFKSSRS 183
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ ++++++FFS ++ I++ K GRPSGEA + T ED +A+
Sbjct: 7 VRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKALE 66
Query: 112 KDRTNIRHRYIELF 125
KDR + HRYIE+F
Sbjct: 67 KDRKYMGHRYIEVF 80
>gi|380029403|ref|XP_003698363.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Apis florea]
Length = 413
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYF 100
GD W S G H++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV F
Sbjct: 284 GDTWGGNS---GIHSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEF 340
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLN 127
ATHE+A++AMSKD++++ HRYIELFLN
Sbjct: 341 ATHEEAVKAMSKDKSHMSHRYIELFLN 367
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 49 SSGPGHH-----TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEAD 97
S+G G H V +RGLP+ +I+ FFS V++ ++ + GRPSGEA
Sbjct: 2 SNGSGDHDDEGYVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMS-REGRPSGEAY 60
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V T ED +A +DR ++ HRYIE+F
Sbjct: 61 VEMDTLEDIEKACKRDRDHMGHRYIEVF 88
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 22/122 (18%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGMNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR----------YIELFLNS-SSPRGG 134
+Y GR +GEA V F + A +A+ K + I HR YIE+F +S S R
Sbjct: 148 DY-TGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRAS 206
Query: 135 VG 136
+G
Sbjct: 207 IG 208
>gi|340722803|ref|XP_003399791.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus terrestris]
gi|350424200|ref|XP_003493719.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus impatiens]
Length = 414
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYF 100
GD W S G H++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV F
Sbjct: 285 GDTWGGNS---GIHSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEF 341
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLN 127
ATHE+A++AMSKD++++ HRYIELFLN
Sbjct: 342 ATHEEAVKAMSKDKSHMSHRYIELFLN 368
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 12/88 (13%)
Query: 49 SSGPGHH-----TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEAD 97
S+G G H V +RGLP+ +I+ FFS V++ ++ + GRPSGEA
Sbjct: 2 SNGSGDHDDEGYVVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMS-REGRPSGEAY 60
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V T ED +A +DR ++ HRYIE+F
Sbjct: 61 VEMDTLEDIEKACKRDRDHMGHRYIEVF 88
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGMNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR----------YIELFLNSSS 130
+Y GR +GEA V F + A +A+ K + I HR YIE+F +S S
Sbjct: 148 DY-TGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTDXLAGFGYIEIFRSSLS 201
>gi|156550801|ref|XP_001600558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Nasonia
vitripennis]
Length = 563
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFA 101
D W N ++G G H VHMRGLPFR E+DI DFF P+ P+ + I +NG R SGEADV FA
Sbjct: 285 DNW-NCNNGGGMHCVHMRGLPFRATEQDIADFFRPLSPISIRIILENGGRASGEADVEFA 343
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSS 129
+HE+A++AMSKD++++ HRYIELFLNS
Sbjct: 344 SHEEAVKAMSKDKSHMSHRYIELFLNSQ 371
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLPF ++++I FFS ++P + + +Y GR +GEA V F + A +A+
Sbjct: 114 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDY-TGRSTGEAYVQFVNKDVAERALQ 172
Query: 112 KDRTNIRHRYIELFLNS-SSPRGGVG 136
K + I HRYIE+F +S S R +G
Sbjct: 173 KHKEKIGHRYIEIFRSSLSEVRASIG 198
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ +I+ FF +++ ++ + GRPSGEA + + ED +A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMS-REGRPSGEAYIEMDSEEDIEKA 72
Query: 110 MSKDRTNIRHRYIELF 125
+DR ++ HRYIE+F
Sbjct: 73 CKRDRDHMGHRYIEVF 88
>gi|427792669|gb|JAA61786.1| Putative splicing factor hnrnp-f, partial [Rhipicephalus
pulchellus]
Length = 302
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 81/130 (62%), Gaps = 23/130 (17%)
Query: 14 ANRFGGG-------------RGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMR 60
A RFGGG RG D + D F G G R+ S GH VHMR
Sbjct: 109 AERFGGGPSRYGMGRGGRNFRGFVEEDGYAD----FGGSGGGARF----SATGHF-VHMR 159
Query: 61 GLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRH 119
GLPFR E+DI +FF P+ P+ V + Y++ GRPSGE DV FATHE+A++AMSKD+ +++H
Sbjct: 160 GLPFRATERDIFEFFQPMNPINVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQH 219
Query: 120 RYIELFLNSS 129
RYIELFLNS+
Sbjct: 220 RYIELFLNST 229
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 78 VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+VP + + +Y+ GR +GEA V FAT + A +AM K + I HRYIE+F +S
Sbjct: 28 IVPNGITLPTDYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 79
>gi|427789699|gb|JAA60301.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 411
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 82/120 (68%), Gaps = 8/120 (6%)
Query: 13 GANRFGGGRGCFNNDRWNDRPG--GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKD 70
G +R+G GRG N + + G F G G R+ S GH VHMRGLPFR E+D
Sbjct: 224 GPSRYGMGRGGRNFRGFVEEDGYADFGGSGGGARF----SATGHF-VHMRGLPFRATERD 278
Query: 71 IVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
I +FF P+ P+ V + Y++ GRPSGE DV FATHE+A++AMSKD+ +++HRYIELFLNS+
Sbjct: 279 IFEFFQPMNPINVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNST 338
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+Y+ GR +GEA V FAT + A +AM K + I HRYIE+F +S
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 188
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ +RGLP+ +++I++FF+ + V++ ++ + GRPSGEA + + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLS-REGRPSGEAYIELESEQDME 69
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+ + +I HRYIE+F + S
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRS 92
>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
(hnRNP H) [Tribolium castaneum]
gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]
Length = 379
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 2 YDANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRG 61
Y+ +++T + +R GGR + D W++ + GDR + H VHMRG
Sbjct: 250 YEKSSSTWSNGSDSR--GGRSPYEIDSWSE-----TNNQTGDRTM--------HCVHMRG 294
Query: 62 LPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR 120
LPF+ DI DFF P+VP V + NGR SGEADV FA+HEDAM+AMSKD+ +++HR
Sbjct: 295 LPFKATAADITDFFKPIVPTNVKLLQDHNGRASGEADVEFASHEDAMRAMSKDKGHMQHR 354
Query: 121 YIELFLNSSSPRGGVGG 137
YIELFLNS+ G G
Sbjct: 355 YIELFLNSAGADNGNSG 371
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 10/102 (9%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
WV + SGP + V +RGLPF ++++I FF+ +VP + + +Y +GR SGE
Sbjct: 94 WVIKRSGPTYGVNDDGCVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDY-SGRSSGE 152
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGG 137
A V F E A +A+ K R I HRYIE+F +S S V G
Sbjct: 153 AYVQFVNKEVAEKALLKHREKIGHRYIEIFRSSLSEVNSVLG 194
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ +DI+ FF V + I+ + GRPSGEA V F + +D A
Sbjct: 10 YIVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSA 69
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR +I RYIE+F
Sbjct: 70 LRKDREHIGSRYIEVF 85
>gi|395541913|ref|XP_003772881.1| PREDICTED: G-rich sequence factor 1 [Sarcophilus harrisii]
Length = 441
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 359 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAIAAM 418
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
SKDR++++HRYIELFLN S P+G
Sbjct: 419 SKDRSHVQHRYIELFLN-SCPKG 440
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++++ R +GEA V F E A QA+ K
Sbjct: 213 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDHRGRRKTGEAYVQFEEPEMANQALLKH 272
Query: 114 RTNIRHRYIELF 125
+ I +RYIE+F
Sbjct: 273 KEEIGNRYIEIF 284
>gi|346465413|gb|AEO32551.1| hypothetical protein [Amblyomma maculatum]
Length = 434
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 79/120 (65%), Gaps = 8/120 (6%)
Query: 13 GANRFGGGRGC--FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKD 70
G +R+G GRG F D G F G G + S GH VHMRGLPFR E+D
Sbjct: 247 GPSRYGMGRGGRNFRGFVEEDGYGDFGGSVGGSHF----SATGHF-VHMRGLPFRATERD 301
Query: 71 IVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
I +FF P+ PV V Y++ GRPSGE DV FATHE+A++AMSKD+ +++HRYIELFLNS+
Sbjct: 302 IFEFFQPMNPVNVHFIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNST 361
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS +VP + +
Sbjct: 110 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 169
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+Y+ GR +GEA V FAT + A +AM K + I HRYIE+F +S
Sbjct: 170 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 211
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ +RGLP+ +++I++FF+ + V++ ++ + GRPSGEA + + +D
Sbjct: 34 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVHMTLS-REGRPSGEAYIELESEQDVE 92
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+ + +I HRYIE+F + S
Sbjct: 93 IGLQRHNEHIGHRYIEVFKSKRS 115
>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]
Length = 388
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 4/87 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYF 100
GD W S G H++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV F
Sbjct: 259 GDSWGGNS---GVHSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEF 315
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLN 127
ATHE+A++AM KD++++ HRYIELFLN
Sbjct: 316 ATHEEAVKAMCKDKSHMLHRYIELFLN 342
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS ++P + +
Sbjct: 72 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 131
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+Y GR +GEA V F + A +A+ K + I HRYIE+F +S S
Sbjct: 132 DY-TGRSTGEAYVQFVNKDVAERALQKHKEKIGHRYIEIFRSSLS 175
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
MRGLP+ +I+ FF+ V++ ++ + GRPSGEA V T ED +A +
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMS-REGRPSGEAYVEMDTPEDIEKACKR 59
Query: 113 DRTNIRHRYIELF 125
DR ++ HRYIE+F
Sbjct: 60 DRDHMGHRYIEVF 72
>gi|148673402|gb|EDL05349.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Mus musculus]
Length = 429
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 321 FESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 378
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 379 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 428
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 200 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 259
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 260 REEIGNRYIEIF 271
>gi|148233462|ref|NP_001087973.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus laevis]
gi|52138903|gb|AAH82630.1| LOC494658 protein [Xenopus laevis]
Length = 342
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 10/96 (10%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR +E DI +FFSP+ P+ V I+ +GR +GEADV FATHEDA+ AMSKD
Sbjct: 211 HFVHMRGLPFRASESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 270
Query: 114 RTNIRHRYIELFLNSSS---------PRGGVGGSGF 140
+ N++HRYIELFLNS++ R G+ G+G+
Sbjct: 271 KNNMQHRYIELFLNSTAGGGAGMGCYGRDGLDGTGY 306
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 5/77 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
TV +RGLPF ++++IV FFS +VP + + ++Y+ GR +GEA V FA+ E A A+
Sbjct: 35 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALG 93
Query: 112 KDRTNIRHRYIELFLNS 128
K + I HRYIE+F +S
Sbjct: 94 KHKERIGHRYIEIFKSS 110
>gi|26337751|dbj|BAC32561.1| unnamed protein product [Mus musculus]
Length = 479
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 371 FESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 428
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 429 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|26346715|dbj|BAC37006.1| unnamed protein product [Mus musculus]
Length = 479
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 371 FESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 428
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 429 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V + GLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLTGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|148596934|ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus]
gi|55976518|sp|Q8C5Q4.2|GRSF1_MOUSE RecName: Full=G-rich sequence factor 1; Short=GRSF-1
gi|26336891|dbj|BAC32129.1| unnamed protein product [Mus musculus]
gi|182888413|gb|AAI60216.1| G-rich RNA sequence binding factor 1 [synthetic construct]
Length = 479
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 371 FESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 428
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 429 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|395521342|ref|XP_003764777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 465
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDAMQA 109
P H VHMRGLP++ EKDI DFFSP+ PV Y+++ +GR +GEADV FATHEDA+ A
Sbjct: 279 PAGHFVHMRGLPYKATEKDIYDFFSPLKPVGAYIEVG-ADGRVTGEADVEFATHEDAVAA 337
Query: 110 MSKDRTNIRHRYIELFLNS 128
MSKD+ N++HRYIELFLNS
Sbjct: 338 MSKDKANMQHRYIELFLNS 356
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 5/78 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF N++DIV+FFS ++P + + ++++ G+ SGEA V FA+ E A +A+ K
Sbjct: 112 VRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDFR-GKNSGEAFVQFASQEIAEKALKK 170
Query: 113 DRTNIRHRYIELFLNSSS 130
+ + HRYIE+F +S +
Sbjct: 171 HKEKMGHRYIEIFKSSQA 188
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDA 106
G V +RGLP+ + D+ +FFS V ++ + + GRPSGEA V + E+
Sbjct: 8 GRFVVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHF-MYTREGRPSGEAFVELESEEEI 66
Query: 107 MQAMSKDRTNIRHRYIELF 125
A+ K + + HRY+E+F
Sbjct: 67 ELALKKHKETMAHRYVEVF 85
>gi|148596982|ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus]
Length = 362
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 253 AFESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 361
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|26354144|dbj|BAC40702.1| unnamed protein product [Mus musculus]
Length = 344
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 235 AFESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 292
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 293 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 343
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 115 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 174
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 175 REEIGNRYIEIF 186
>gi|194389894|dbj|BAG60463.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 19 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 78
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ N++HRY+ELFLNS++ G G +S L
Sbjct: 79 KANMQHRYVELFLNSTA---GASGGAYSSQML 107
>gi|126330654|ref|XP_001364439.1| PREDICTED: g-rich sequence factor 1 isoform 1 [Monodelphis
domestica]
Length = 478
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DIV+FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 396 PSLHFVHMRGLPFQANAQDIVNFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 455
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR++++HRYIELFLN S P+G
Sbjct: 456 GKDRSHVQHRYIELFLN-SCPKG 477
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ ++ + ++++ + +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIIDITFVMDHRGRKKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
+ I +RYIE+F
Sbjct: 310 KEEIGNRYIEIF 321
>gi|344284915|ref|XP_003414210.1| PREDICTED: G-rich sequence factor 1 [Loxodonta africana]
Length = 484
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +++ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 376 FESEKEIELPKEMSEKLP--EAVDFGATPSVHFVHMRGLPFQANAQDIINFFAPLKPVRI 433
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F+THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 434 TMEYSSSGKATGEADVHFSTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 483
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 255 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 314
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 315 REEIGNRYIEIF 326
>gi|307176277|gb|EFN65908.1| Heterogeneous nuclear ribonucleoprotein H2 [Camponotus floridanus]
Length = 417
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMS 111
G H++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV FATHE+A++AM
Sbjct: 295 GVHSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMC 354
Query: 112 KDRTNIRHRYIELFLN 127
KD++++ HRYIELFLN
Sbjct: 355 KDKSHMSHRYIELFLN 370
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 49 SSGPGHH-----TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEAD 97
SSG G H V MRGLP+ +I+ FF V++ ++ + GRPSGEA
Sbjct: 2 SSGSGDHEDEGYVVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMS-REGRPSGEAY 60
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V T ED +A +DR ++ HRYIE+F
Sbjct: 61 VEMDTPEDIEKACKRDRDHMGHRYIEVF 88
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 23/117 (19%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR------------YIELFLNSSS 130
+Y GR +GEA V F + A +A+ K + I HR YIE+F +S S
Sbjct: 148 DY-TGRSTGEAYVQFVNKDVAERALQKHKEKIGHRWGTETLYIAGFGYIEIFRSSLS 203
>gi|346473523|gb|AEO36606.1| hypothetical protein [Amblyomma maculatum]
Length = 412
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E+DI +FF P+ PV V + Y++ GRPSGE DV FATHE+A++AMSKD
Sbjct: 263 HFVHMRGLPFRATERDIFEFFQPMNPVNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKD 322
Query: 114 RTNIRHRYIELFLNSS 129
+ +++HRYIELFLNS+
Sbjct: 323 KAHMQHRYIELFLNST 338
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+Y+ GR +GEA V FAT + A +AM K + I HRYIE+F +S
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 188
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ +RGLP+ +++I++FF+ + V++ ++ + GRPSGEA + + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVHMTLS-REGRPSGEAYIELESEQDVE 69
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+ + +I HRYIE+F + S
Sbjct: 70 VGLQRHNEHIGHRYIEVFKSKRS 92
>gi|395857260|ref|XP_003801023.1| PREDICTED: G-rich sequence factor 1 [Otolemur garnettii]
Length = 528
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 76/112 (67%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F N++ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 419 AFENEKEIELPKEMSEKLP--EAVDFGATPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 476
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 477 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 527
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ +EKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 299 VVRLRGLPYSCDEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 358
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 359 REEIGNRYIEIF 370
>gi|148673403|gb|EDL05350.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Mus musculus]
Length = 403
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 77/112 (68%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 294 AFESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVR 351
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 352 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 402
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 174 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 233
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 234 REEIGNRYIEIF 245
>gi|354495968|ref|XP_003510100.1| PREDICTED: G-rich sequence factor 1-like [Cricetulus griseus]
Length = 457
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 69/89 (77%), Gaps = 2/89 (2%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHE 104
V+ S P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THE
Sbjct: 369 VDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHE 428
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
DA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 429 DAVAAMLKDRSHVQHRYIELFLN-SCPKG 456
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 229 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 288
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 289 EEIGNRYIEIF 299
>gi|18605870|gb|AAH23162.1| Hnrpf protein, partial [Mus musculus]
Length = 188
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 48 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 106
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 107 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 138
>gi|344252227|gb|EGW08331.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 185
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 45 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 103
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 104 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 135
>gi|291401649|ref|XP_002717080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like, partial
[Oryctolagus cuniculus]
Length = 482
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +++ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 374 FESEKEIELPKEMSEKLP--EAVDLGTTPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 431
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 432 TMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 481
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 253 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 312
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 313 REEIGNRYIEIF 324
>gi|405952153|gb|EKC19997.1| Heterogeneous nuclear ribonucleoprotein H [Crassostrea gigas]
Length = 544
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 5/93 (5%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEA 96
G PG +V+ + H+VHMRGLPF+ E DI DFFSP+ PV V+ + NGRP+GEA
Sbjct: 376 GATPGSHYVSRTG----HSVHMRGLPFQALESDIADFFSPLTPVRVEFEFAPNGRPTGEA 431
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
+V F TH DA++AMS+ + N++HRYIELFLNS+
Sbjct: 432 NVDFKTHSDAVEAMSRHKKNMQHRYIELFLNST 464
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 20 GRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVD 73
G C N N F + WV + +GPG V +RGLPF ++++I
Sbjct: 102 GLKCHNKHMGNRYIEVFRSKKSEMDWVIKRAGPGQMPGSCEAVVRLRGLPFGCSKEEIAQ 161
Query: 74 FFS--PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
FF+ +VP + + + GR +GEA V FA+ E A +A+SK + I HRYIE+F
Sbjct: 162 FFTGLEIVPNGIMLPEDRQGRSTGEAYVQFASQEIAEKALSKHKERIGHRYIEIF 216
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY-----VDINY-KNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ E ++V FF V + V + + GRPSGE V ++ +
Sbjct: 43 VVRLRGLPWSATESEVVKFFGEDVEIVDGEQGVHFTFSREGRPSGECFVELIDEDNVQRG 102
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ ++ +RYIE+F + S
Sbjct: 103 LKCHNKHMGNRYIEVFRSKKS 123
>gi|281427145|ref|NP_001094360.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 479
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR++++HRYIELFLN S P+G
Sbjct: 457 LKDRSHVQHRYIELFLN-SCPKG 478
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 311 EEIGNRYIEIF 321
>gi|74355899|gb|AAI03655.1| Grsf1 protein, partial [Rattus norvegicus]
Length = 142
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 60 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 119
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR++++HRYIELFLN S P+G
Sbjct: 120 LKDRSHVQHRYIELFLN-SCPKG 141
>gi|60098931|emb|CAH65296.1| hypothetical protein RCJMB04_15n19 [Gallus gallus]
Length = 499
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 13 GANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIV 72
G++RFG W G + R GD S GH VHMRGLP+R E DI
Sbjct: 286 GSDRFG--------REWTLFSAGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIY 336
Query: 73 DFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS
Sbjct: 337 NFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 393
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 183
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 184 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 33 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 91
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+ +F
Sbjct: 92 ESEEDVKLALKKDRETMGHRYVVVF 116
>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus]
gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus
gallus]
Length = 519
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 13 GANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIV 72
G++RFG W G + R GD S GH VHMRGLP+R E DI
Sbjct: 306 GSDRFG--------REWTLFSAGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIY 356
Query: 73 DFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS
Sbjct: 357 NFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 413
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 145 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 203
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 204 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 237
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 53 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 111
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 112 ESEEDVKLALKKDRETMGHRYVEVF 136
>gi|380806715|gb|AFE75233.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 112
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 6 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 64
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS-PRGGVGGS 138
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS++ GG GS
Sbjct: 65 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAGASGGAYGS 110
>gi|345325737|ref|XP_003430953.1| PREDICTED: G-rich sequence factor 1-like [Ornithorhynchus anatinus]
Length = 224
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQ 108
+ P H V MRGLPF+ N +DIV+FFSP+ PV + + Y + G+ +GEADV+F +HEDA+
Sbjct: 140 TAPSFHFVRMRGLPFQANAQDIVNFFSPLKPVRITMEYSSSGKATGEADVHFESHEDAVA 199
Query: 109 AMSKDRTNIRHRYIELFLNSSSPRG 133
AM+KDR++++HRYIELFLN S P+G
Sbjct: 200 AMAKDRSHVQHRYIELFLN-SCPKG 223
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI 85
V +RGLP+ +EKD+VDFF+ P Y++I
Sbjct: 39 VVRLRGLPYGCSEKDVVDFFAAADP-YIEI 67
>gi|241339179|ref|XP_002408443.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
gi|215497357|gb|EEC06851.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
Length = 293
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E+DI +FF P+ P+ V + Y++ GRPSGE DV FATHE+A++AMSKD
Sbjct: 139 HFVHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKD 198
Query: 114 RTNIRHRYIELFLNSS 129
+ +++HRYIELFLNS+
Sbjct: 199 KAHMQHRYIELFLNST 214
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 69 KDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR 120
++I++FF+ + V++ ++ + GRPSGEA + + +D + + +I HR
Sbjct: 6 QEILNFFTSKEVNIKGGISGVHMTLS-REGRPSGEAYIELESEQDVEVGLQRHNEHIGHR 64
Query: 121 YIELFLNSSS 130
YIE+F + S
Sbjct: 65 YIEVFKSKRS 74
>gi|442746139|gb|JAA65229.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 206
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E+DI +FF P+ P+ V + Y++ GRPSGE DV FATHE+A++AMSKD
Sbjct: 111 HFVHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKD 170
Query: 114 RTNIRHRYIELFLNSS 129
+ +++HRYIELFLNS+
Sbjct: 171 KAHMQHRYIELFLNST 186
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS-SSPRGGVG 136
R +GEA V FAT + A +AM K + I HRYIE+F +S R VG
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVG 47
>gi|74222440|dbj|BAE38120.1| unnamed protein product [Mus musculus]
Length = 272
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 112 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 171
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 172 KANMQHRYVELFLNSTA--GASGGA 194
>gi|417409228|gb|JAA51131.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 271
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 111 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 170
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 171 KANMQHRYVELFLNSTA--GASGGA 193
>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]
Length = 472
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|417409033|gb|JAA51043.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 251
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 68/100 (68%), Gaps = 8/100 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 111 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 170
Query: 114 RTNIRHRYIELFLNSSSPRGG-------VGGSGFSRSELW 146
+ N++HRY+ELFLNS++ G +GG G S +
Sbjct: 171 KANMQHRYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSY 210
>gi|397477061|ref|XP_003809903.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Pan paniscus]
gi|426351280|ref|XP_004043181.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Gorilla
gorilla gorilla]
Length = 452
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 8/95 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGG-------VGGSGFS 141
+ N++HRY+ELFLNS++ G +GG G S
Sbjct: 349 KANMQHRYVELFLNSTAGASGGAYGSQMMGGMGLS 383
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|120538378|gb|AAI29088.1| Hnrph1 protein [Rattus norvegicus]
Length = 429
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 8/95 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGG-------VGGSGFS 141
+ N++HRY+ELFLNS++ G +GG G S
Sbjct: 349 KANMQHRYVELFLNSTAGASGGAYGSQMLGGMGLS 383
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|354486518|ref|XP_003505427.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Cricetulus
griseus]
Length = 447
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 264 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 323
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 324 KANMQHRYVELFLNSTA--GASGGA 346
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 70 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 128
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 129 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 162
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA V + ++ A+ KDR + HRY+E+F
Sbjct: 21 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 61
>gi|441595654|ref|XP_003279600.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Nomascus leucogenys]
Length = 452
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 8/95 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGG-------VGGSGFS 141
+ N++HRY+ELFLNS++ G +GG G S
Sbjct: 349 KANMQHRYVELFLNSTAGASGGAYGSQMMGGMGLS 383
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|149033731|gb|EDL88527.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 281
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 199 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 258
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR++++HRYIELFLN S P+G
Sbjct: 259 LKDRSHVQHRYIELFLN-SCPKG 280
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 111
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 112 REEIGNRYIEIF 123
>gi|148701752|gb|EDL33699.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Mus
musculus]
Length = 485
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 302 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 361
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 362 KANMQHRYVELFLNSTA--GASGGA 384
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 108 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 166
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 167 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 200
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 85 KKDRETMGHRYVEVF 99
>gi|395504896|ref|XP_003756782.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sarcophilus
harrisii]
Length = 471
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 288 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 347
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 348 KANMQHRYVELFLNSTA--GASGGA 370
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 152
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 153 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA V + ++ A+ KDR + HRY+E+F
Sbjct: 45 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 85
>gi|390459519|ref|XP_002744505.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Callithrix
jacchus]
Length = 472
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|395736587|ref|XP_003780726.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Pongo abelii]
Length = 430
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 67/95 (70%), Gaps = 8/95 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 290 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 349
Query: 114 RTNIRHRYIELFLNSSSPRGG-------VGGSGFS 141
+ N++HRY+ELFLNS++ G +GG G S
Sbjct: 350 KANMQHRYVELFLNSTAGASGGAYGSQMMGGMGLS 384
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 96 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 154
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 188
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 13 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 72
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E F
Sbjct: 73 KKDRETMGHRYVEGF 87
>gi|344246789|gb|EGW02893.1| Heterogeneous nuclear ribonucleoprotein H [Cricetulus griseus]
Length = 415
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 262 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 321
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 322 KANMQHRYVELFLNSTA--GASGGA 344
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 68 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 126
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 127 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 160
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA V + ++ A+ KDR + HRY+E+F
Sbjct: 19 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 59
>gi|47222987|emb|CAF99143.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 267 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 326
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ GG GS
Sbjct: 327 KANMQHRYVELFLNSTA--GGSNGS 349
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 15/89 (16%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP----VYVDINYKNGRP 92
WV + +GP G + +RGLPF ++++IV FFS +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPGTAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRY 121
+GEA V FA+ + A +A+ K + I HR+
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRW 175
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS + + Y + GRPSGEA V T +D A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVA 65
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
>gi|355691923|gb|EHH27108.1| hypothetical protein EGK_17225 [Macaca mulatta]
Length = 472
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
+DR + HRY+E+F
Sbjct: 72 KEDRETMGHRYVEVF 86
>gi|67971142|dbj|BAE01913.1| unnamed protein product [Macaca fascicularis]
Length = 286
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 126 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 185
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 186 KANMQHRYVELFLNSTA--GASGGA 208
>gi|301768278|ref|XP_002919563.1| PREDICTED: g-rich sequence factor 1-like [Ailuropoda melanoleuca]
Length = 717
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y NG+ +GEADV+F THEDA+ AM KD
Sbjct: 638 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKD 697
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 698 RSHVHHRYIELFLN-SCPKG 716
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 488 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 547
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 548 REEIGNRYIEIF 559
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+V+FFS ++ +N ++G+ G+A + + +D +
Sbjct: 387 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQK 445
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 446 ALEKHRMYMGQRYVEVY 462
>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia
guttata]
Length = 419
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 13 GANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIV 72
G++RFG W G + R GD S GH VHMRGLP+R E DI
Sbjct: 237 GSDRFG--------REWTLFSAGMSDHRYGDGSSTFQSTTGH-CVHMRGLPYRATENDIY 287
Query: 73 DFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS
Sbjct: 288 NFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 344
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 76 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 134
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 135 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 168
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA + ED A+ KDR + HRY+E+F
Sbjct: 27 IYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVF 67
>gi|402873628|ref|XP_003919688.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Papio anubis]
Length = 472
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|148701751|gb|EDL33698.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Mus
musculus]
Length = 311
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 128 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 187
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 188 KANMQHRYVELFLNSTA--GASGGA 210
>gi|261859020|dbj|BAI46032.1| heterogeneous nuclear ribonucleoprotein H1 [synthetic construct]
Length = 472
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|395853398|ref|XP_003799198.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Otolemur garnettii]
gi|395853400|ref|XP_003799199.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Otolemur garnettii]
gi|395853402|ref|XP_003799200.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 3
[Otolemur garnettii]
Length = 449
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|126290596|ref|XP_001369385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Monodelphis
domestica]
Length = 449
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|26353116|dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|296196376|ref|XP_002745793.1| PREDICTED: G-rich sequence factor 1 [Callithrix jacchus]
Length = 479
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 397 PCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 456
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR+++ HRYIELFLN S P+G
Sbjct: 457 LKDRSHVHHRYIELFLN-SCPKG 478
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|440897190|gb|ELR48939.1| Heterogeneous nuclear ribonucleoprotein H [Bos grunniens mutus]
Length = 472
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|410914042|ref|XP_003970497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 406
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 253 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEVGPDGRVTGEADVEFATHEDAVAAMSKD 312
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ GG GS
Sbjct: 313 KANMQHRYVELFLNSTA--GGSNGS 335
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 15/98 (15%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP----VYVDINYKNGRP 92
WV + +GP G + +RGLPF ++++IV FFS +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPGTAGDGLIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+GEA V FA+ + A +A+ K + I HRYIE+F +S +
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRA 184
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV----YVDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS + + Y + GRPSGEA V + ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVA 65
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
>gi|194219511|ref|XP_001497574.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Equus
caballus]
Length = 456
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 296 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 355
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 356 KANMQHRYVELFLNSTA--GASGGA 378
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 102 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 160
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 161 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 194
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA V + ++ A+ KDR + HRY+E+F
Sbjct: 53 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 93
>gi|441595657|ref|XP_004087258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Nomascus leucogenys]
Length = 472
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|431892769|gb|ELK03202.1| Heterogeneous nuclear ribonucleoprotein H [Pteropus alecto]
Length = 435
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 77/116 (66%), Gaps = 7/116 (6%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +DR+ G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V
Sbjct: 255 FGSDRFGR---GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRV 310
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS++ G GG+
Sbjct: 311 HIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGA 364
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|380806713|gb|AFE75232.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 118
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 4/105 (3%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 6 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 64
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS++ G GG+
Sbjct: 65 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTA--GASGGA 107
>gi|351714509|gb|EHB17428.1| Heterogeneous nuclear ribonucleoprotein H, partial [Heterocephalus
glaber]
Length = 444
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 261 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 320
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 321 KANMQHRYVELFLNSTA--GASGGA 343
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 67 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 125
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 126 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 159
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GRPSGEA V + ++ A+ KDR + HRY+E+F
Sbjct: 18 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 58
>gi|322801457|gb|EFZ22118.1| hypothetical protein SINV_07549 [Solenopsis invicta]
Length = 425
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMS 111
G +++HMRGLPF+ E+DI DFF P+ PV V I +NG RPSGEADV FATHE+A++AM
Sbjct: 331 GVYSIHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEALKAMC 390
Query: 112 KDRTNIRHRYIELFLN 127
KD++++ HRYIELF+N
Sbjct: 391 KDKSHMSHRYIELFMN 406
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 49 SSGPGHH-----TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEAD 97
SSG H V +RGLP+ +I+ FF V++ + + GRPSGEA
Sbjct: 2 SSGSAEHEEEGYVVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTS-REGRPSGEAY 60
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V T ED +A +DR ++ HRYIE+F
Sbjct: 61 VEMDTPEDIEKACKRDRDHMGHRYIEVF 88
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS ++P + +
Sbjct: 88 FKAKRGEMEWVVKRSGLNLENAMDDGCVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPT 147
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRH 119
+Y GR +GEA V F + A +A+ K + I H
Sbjct: 148 DY-TGRSTGEAYVQFVNKDVAERALQKHKEKIGH 180
>gi|48145673|emb|CAG33059.1| HNRPH1 [Homo sapiens]
Length = 449
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 11/96 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
EA V FA+ E A +A+ K + I HRYIE+F +S +
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSGA 189
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|343961567|dbj|BAK62373.1| heterogeneous nuclear ribonucleoprotein H [Pan troglodytes]
Length = 357
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 197 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 256
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 257 KANMQHRYVELFLNSTA--GASGGA 279
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 3 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 61
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 62 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 95
>gi|112491343|pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F
gi|297787489|pdb|2KG1|A Chain A, Structure Of The Third Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 139
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 47 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 106
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 107 RANMQHRYIELFLNSTT 123
>gi|5031753|ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|300794637|ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus]
gi|381342476|ref|NP_001244222.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|73970381|ref|XP_857122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 19
[Canis lupus familiaris]
gi|109080078|ref|XP_001099955.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 7
[Macaca mulatta]
gi|114603795|ref|XP_001150460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2 [Pan
troglodytes]
gi|291410134|ref|XP_002721348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Oryctolagus cuniculus]
gi|301771512|ref|XP_002921169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Ailuropoda melanoleuca]
gi|311249564|ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa]
gi|348551747|ref|XP_003461691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Cavia
porcellus]
gi|403307005|ref|XP_003944005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Saimiri boliviensis boliviensis]
gi|403307007|ref|XP_003944006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Saimiri boliviensis boliviensis]
gi|410947937|ref|XP_003980698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Felis catus]
gi|426228702|ref|XP_004008435.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Ovis aries]
gi|1710632|sp|P31943.4|HNRH1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|347314|gb|AAA91346.1| hnRNP H [Homo sapiens]
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
gi|119574192|gb|EAW53807.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|119574193|gb|EAW53808.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|193784895|dbj|BAG54048.1| unnamed protein product [Homo sapiens]
gi|296486243|tpg|DAA28356.1| TPA: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos taurus]
Length = 449
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|344265353|ref|XP_003404749.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Loxodonta
africana]
Length = 449
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + +D A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|20073357|gb|AAH27003.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 67/97 (69%), Gaps = 2/97 (2%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 193 GMCDHRYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 251
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
GEADV FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 252 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 18 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 77
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 78 AFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|10946928|ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|46396669|sp|O35737.3|HNRH1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|2253041|emb|CAA74583.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|33604202|gb|AAH56224.1| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|37589940|gb|AAH42187.2| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|74149585|dbj|BAE36421.1| unnamed protein product [Mus musculus]
gi|148701754|gb|EDL33701.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_d [Mus
musculus]
gi|149052456|gb|EDM04273.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Rattus
norvegicus]
Length = 449
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|148701753|gb|EDL33700.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Mus
musculus]
Length = 288
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 128 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 187
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 188 KANMQHRYVELFLNSTA--GASGGA 210
>gi|73975377|ref|XP_532402.2| PREDICTED: G-rich sequence factor 1 [Canis lupus familiaris]
Length = 372
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 263 AFESEKEIELPKEMSEKLP--EAVDFGATSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 320
Query: 83 VDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y NG+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 321 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 371
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 143 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 202
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 203 REEIGNRYIEIF 214
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+V+FFS ++ +N ++G+ G+A + + +D +
Sbjct: 42 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQK 100
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 101 ALEKHRMYMGQRYVEVY 117
>gi|334313810|ref|XP_001369254.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Monodelphis domestica]
Length = 377
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 224 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 283
Query: 112 KDRTNIRHRYIELFLNSSS 130
KD+ N++HRYIELFLNS++
Sbjct: 284 KDKNNMQHRYIELFLNSTA 302
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHH----TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEA 96
WV + +GP TV +RGLPF ++++IV FF+ +VP + + ++Y+ GR +GEA
Sbjct: 33 WVMKHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 91
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 92 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRS 125
>gi|149602744|ref|XP_001512376.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Ornithorhynchus anatinus]
Length = 332
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 179 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 112 KDRTNIRHRYIELFLNSSS 130
KD+ N++HRYIELFLNS++
Sbjct: 239 KDKNNMQHRYIELFLNSTA 257
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHH----TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEA 96
WV + +GP TV +RGLPF ++++IV FF+ +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDTASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 61
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRS 95
>gi|119574671|gb|EAW54286.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_e
[Homo sapiens]
Length = 177
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 24 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 83
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 84 KDKNNMQHRYIELFLNST 101
>gi|355761375|gb|EHH61795.1| hypothetical protein EGM_19914 [Macaca fascicularis]
Length = 357
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 197 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 256
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 257 KANMQHRYVELFLNSTA--GASGGA 279
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 3 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 61
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 62 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 95
>gi|281347672|gb|EFB23256.1| hypothetical protein PANDA_008197 [Ailuropoda melanoleuca]
Length = 362
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKLP--EAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 83 VDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y NG+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+V+FFS ++ +N ++G+ G+A + + +D +
Sbjct: 32 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQK 90
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 91 ALEKHRMYMGQRYVEVY 107
>gi|193784859|dbj|BAG54012.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 380 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 439
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 440 RSHVHHRYIELFLN-SCPKG 458
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 231 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 290
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 291 EEIGNRYIEIF 301
>gi|148886840|sp|Q8VHV7.2|HNRH1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; AltName: Full=Ratsg1; Contains: RecName:
Full=Heterogeneous nuclear ribonucleoprotein H,
N-terminally processed
Length = 449
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF +E++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|357613158|gb|EHJ68351.1| putative Heterogeneous nuclear ribonucleoprotein H [Danaus
plexippus]
Length = 343
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 62/83 (74%), Gaps = 5/83 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ +DI FF P+ P+ ++I+Y N GRPSGEADV F HEDAM+AM +D
Sbjct: 256 HCVHMRGLPFKATPQDIAYFFKPIRPLNINIHYDNSGRPSGEADVEFECHEDAMRAMRRD 315
Query: 114 RTNIRHRYIELFLNSS----SPR 132
+ N+ HRYIELF+NSS SPR
Sbjct: 316 KNNMEHRYIELFMNSSPTFKSPR 338
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF ++++I+ FF+ + V ++ + GR SGEA VYF + A A+ +
Sbjct: 117 IVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDALDR 176
Query: 113 DRTNIRHRYIELFLNSS 129
D I HRYIE+FL+S+
Sbjct: 177 DMEKIGHRYIEVFLSSA 193
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-----INYKNGRPSGEADVYFATHE 104
SG G + + +RGLPF +D++ F S V + + GRPSGE V + +
Sbjct: 4 SGDGSYIIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQD 63
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D A+ KD+ NI RYIE+F
Sbjct: 64 DVTHALKKDKENIGRRYIEVF 84
>gi|119574194|gb|EAW53809.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_b [Homo
sapiens]
Length = 393
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS-PRGGVGGS 138
+ N++HRY+ELFLNS++ GG GS
Sbjct: 349 KANMQHRYVELFLNSTAGASGGAYGS 374
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 11/96 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
EA V FA+ E A +A+ K + I HRYIE+F +S +
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|18266700|ref|NP_543172.1| heterogeneous nuclear ribonucleoprotein H [Rattus norvegicus]
gi|18104446|gb|AAL59557.1| Ratsg1 [Rattus norvegicus]
Length = 372
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 212 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKD 271
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 272 KANMQHRYVELFLNSTA--GASGGA 294
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF +E++IV FFS +VP + + ++++ GR +G
Sbjct: 18 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 76
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 77 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 110
>gi|395849855|ref|XP_003797528.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 243
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 117 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 176
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 177 RANMQHRYIELFLNSTT 193
>gi|349605437|gb|AEQ00674.1| Heteroproteinous nuclear ribonucleoprotein H3-like protein, partial
[Equus caballus]
Length = 200
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 47 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 106
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 107 KDKNNMQHRYIELFLNST 124
>gi|348534060|ref|XP_003454521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 401
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 6/114 (5%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESS--GPGHHT---VHMRGLPFRVNEKDIVDFFSP 77
CF N +++R G G R G + S G G H+ VHMRGLPFR E DI FFSP
Sbjct: 257 CFGNGMFDERVRGERGGRVGSHGYSGQSDVGSGFHSGHFVHMRGLPFRATEGDIAKFFSP 316
Query: 78 VVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+ P+ + I+ NG+ +GEADV F +HEDA+ AMSKD+ +++HRYIELFLNS++
Sbjct: 317 LNPLRIHIDMAPNGKSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIELFLNSTA 370
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 19/112 (16%)
Query: 45 WVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + SGP + + +RGLPF ++++IV FFS +VP + + ++Y+ GR +G
Sbjct: 92 WVLKRSGPADYDSCSGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQ-GRSTG 150
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS--------PRGGVGGS 138
EA V FA+ E A +A+ K + I HRYIE+F +S + PR G+G
Sbjct: 151 EAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYEVPRRGMGAQ 202
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS V V Y K GRPSGEA + T ED A
Sbjct: 8 YVVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNA 67
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
++KDR + HRYIE+F ++ S
Sbjct: 68 LAKDRKYMGHRYIEVFKSNRS 88
>gi|39644691|gb|AAH04511.2| HNRPH3 protein, partial [Homo sapiens]
Length = 207
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 54 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 113
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 114 KDKNNMQHRYIELFLNST 131
>gi|395501374|ref|XP_003755070.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 [Sarcophilus
harrisii]
Length = 342
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 194 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDALAAMS 253
Query: 112 KDRTNIRHRYIELFLNS 128
KD+ N++HRYIELFLNS
Sbjct: 254 KDKNNMQHRYIELFLNS 270
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHH----TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEA 96
WV + +GP TV +RGLPF ++++IV FF+ +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQ-GRSTGEA 61
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 FVQFASKEIAENALGKHKERIGHRYIEIFKSSRS 95
>gi|432879057|ref|XP_004073431.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 413
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 259 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 318
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 319 KANMQHRYVELFLNSTA 335
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 15/93 (16%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP----VYVDINYKNGRP 92
WV + +GP G V +RGLPF ++++IV FFS +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+GEA V FA+ + A +A+ K + I HRYIE+F
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIF 179
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS + + Y + GRPSGEA V T ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVA 65
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
>gi|410227596|gb|JAA11017.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410268188|gb|JAA22060.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306352|gb|JAA31776.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306354|gb|JAA31777.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360388|gb|JAA44703.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360390|gb|JAA44704.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
Length = 481
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 402 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 461
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 462 RSHVHHRYIELFLN-SCPKG 480
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 253 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 312
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 313 EEIGNRYIEIF 323
>gi|327274272|ref|XP_003221902.1| PREDICTED: g-rich sequence factor 1-like [Anolis carolinensis]
Length = 485
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 72/95 (75%), Gaps = 4/95 (4%)
Query: 40 RPGDRWVNES-SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEAD 97
RP D + ES S P H VH+RGLPF+ +DI++FF+P+ PV + + Y +G+ +GEAD
Sbjct: 388 RPRD--LQESRSFPSLHFVHLRGLPFQATAQDIINFFAPLKPVRITMEYNSSGKATGEAD 445
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
V+F THEDA+ AM+K+R++++HRYIELFLNSS R
Sbjct: 446 VHFETHEDAIAAMAKNRSHVQHRYIELFLNSSPSR 480
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ E DI DFFS ++ + ++ + R +GEA V FAT E A QA+ K
Sbjct: 254 VVRLRGLPYSCTEVDISDFFSGLSIIDITFVMDQRGRRKTGEAFVQFATPEMANQALLKH 313
Query: 114 RTNIRHRYIELFLNSSS 130
+ I +RYIE+F + S
Sbjct: 314 KEEIGNRYIEIFPSQRS 330
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ E+D+++FF+ V ++ +N ++G+ G+A V + +D
Sbjct: 153 YLIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLN-RDGKRRGDALVELESEQDVHN 211
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E+F
Sbjct: 212 ALEKHRRYLGQRYVEVF 228
>gi|431904171|gb|ELK09593.1| Heterogeneous nuclear ribonucleoprotein H3 [Pteropus alecto]
Length = 405
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 252 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 311
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 312 KDKNNMQHRYIELFLNST 329
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 62 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 120
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 121 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 153
>gi|20987708|gb|AAH29764.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 198 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 256
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 257 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 18 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 77
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 78 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 111
>gi|51476543|emb|CAH18256.1| hypothetical protein [Homo sapiens]
Length = 194
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 111 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 170
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 171 KANMQHRYVELFLNSTA--GASGGA 193
>gi|348516774|ref|XP_003445912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 406
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 253 HCVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 312
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 313 KANMQHRYVELFLNSTA 329
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 15/96 (15%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP----VYVDINYKNGRP 92
WV + +GP G V +RGLPF ++++IV FFS +VP + VDI GR
Sbjct: 90 WVMKHTGPNCPETAGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQ---GRS 146
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+GEA V FA+ + A +A+ K + I HRYIE+F +S
Sbjct: 147 TGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 182
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS + + Y + GRPSGEA V F T ED A
Sbjct: 6 YVVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIA 65
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 66 VKKDRETMGHRYVEVF 81
>gi|351712921|gb|EHB15840.1| Heterogeneous nuclear ribonucleoprotein H2 [Heterocephalus glaber]
Length = 416
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 70/98 (71%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G GG S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GGYDHSYVELFLNSTA 385
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HR++E+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRHVEIFKSS 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|301788126|ref|XP_002929479.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Ailuropoda melanoleuca]
gi|344306831|ref|XP_003422087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Loxodonta africana]
Length = 432
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGF 140
+ N++HRY+ELFLNS++ G G +
Sbjct: 349 KANMQHRYVELFLNSTAGTTGASGGAY 375
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|327277960|ref|XP_003223731.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Anolis carolinensis]
Length = 326
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 179 GGHFVHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ +++HRYIELFLNS+
Sbjct: 239 KDKNHMQHRYIELFLNST 256
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFAT 102
N+SS G TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA V FA+
Sbjct: 11 NDSSSDG--TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGEAFVQFAS 67
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSS 130
E A +A+ K + I HRYIE+F +S S
Sbjct: 68 KEIAEKALGKHKERIGHRYIEIFKSSKS 95
>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis
carolinensis]
Length = 490
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 312 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 371
Query: 114 RTNIRHRYIELFLNSS 129
+ N++HRY+ELFLNS+
Sbjct: 372 KANMQHRYVELFLNST 387
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 183
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 184 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-----INYKNGRPSGEADVYF 100
+N G G+ V +RGLP+ + ++ FFS + I + GRPSGEA V
Sbjct: 33 LNAEGGEGY-VVKVRGLPWSCSADEVQRFFSECKILNGSSGVRFIYTREGRPSGEAFVEL 91
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
T ED A+ KDR + HRY+E+F
Sbjct: 92 ETEEDVKSALKKDRETMGHRYVEVF 116
>gi|149193321|ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens]
Length = 480
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 461 RSHVHHRYIELFLN-SCPKG 479
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 312 EEIGNRYIEIF 322
>gi|355693777|gb|AER99447.1| G-rich RNA sequence binding factor 1 [Mustela putorius furo]
Length = 360
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y NG+ +GEADV+F THEDA+ AM KD
Sbjct: 282 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKD 341
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 342 RSHVHHRYIELFLN-SCPKG 360
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 192 REEIGNRYIEIF 203
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+V+FFS ++ +N ++G+ G+A + + +D +
Sbjct: 31 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQK 89
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 90 ALEKHRMYMGQRYVEVY 106
>gi|395861473|ref|XP_003803009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Otolemur
garnettii]
Length = 432
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGF 140
+ N++HRY+ELFLNS++ G G +
Sbjct: 349 KANMQHRYVELFLNSTAGTTGASGGAY 375
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|194379882|dbj|BAG58293.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 85 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 144
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 145 KDKNNMQHRYIELFLNST 162
>gi|4826760|ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470397|ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470400|ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470402|ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470404|ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470406|ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|350537293|ref|NP_001233466.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|386781898|ref|NP_001247944.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|297686319|ref|XP_002820702.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Pongo abelii]
gi|297686321|ref|XP_002820703.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Pongo abelii]
gi|297686325|ref|XP_002820705.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Pongo abelii]
gi|297686327|ref|XP_002820706.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Pongo abelii]
gi|297686329|ref|XP_002820707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Pongo abelii]
gi|297686331|ref|XP_002820708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Pongo abelii]
gi|297686333|ref|XP_002820709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Pongo abelii]
gi|297686337|ref|XP_002820711.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pongo abelii]
gi|297686339|ref|XP_002820712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pongo abelii]
gi|297686341|ref|XP_002820713.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pongo abelii]
gi|297686343|ref|XP_002820714.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pongo abelii]
gi|297686345|ref|XP_002820715.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Pongo abelii]
gi|395741477|ref|XP_003777588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|395741481|ref|XP_003777589.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|397491662|ref|XP_003816768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Pan
paniscus]
gi|397491664|ref|XP_003816769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2 [Pan
paniscus]
gi|397491666|ref|XP_003816770.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3 [Pan
paniscus]
gi|397491668|ref|XP_003816771.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4 [Pan
paniscus]
gi|397491670|ref|XP_003816772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Pan
paniscus]
gi|397491672|ref|XP_003816773.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6 [Pan
paniscus]
gi|397491674|ref|XP_003816774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7 [Pan
paniscus]
gi|397491676|ref|XP_003816775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8 [Pan
paniscus]
gi|397491678|ref|XP_003816776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9 [Pan
paniscus]
gi|397491680|ref|XP_003816777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pan paniscus]
gi|397491682|ref|XP_003816778.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pan paniscus]
gi|397491684|ref|XP_003816779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pan paniscus]
gi|397491686|ref|XP_003816780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pan paniscus]
gi|426364503|ref|XP_004049345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Gorilla gorilla gorilla]
gi|426364505|ref|XP_004049346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Gorilla gorilla gorilla]
gi|426364507|ref|XP_004049347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Gorilla gorilla gorilla]
gi|426364509|ref|XP_004049348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Gorilla gorilla gorilla]
gi|1710628|sp|P52597.3|HNRPF_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; AltName: Full=Nucleolin-like protein
mcs94-1; Contains: RecName: Full=Heterogeneous nuclear
ribonucleoprotein F, N-terminally processed
gi|452048|gb|AAC37584.1| HnRNP F protein [Homo sapiens]
gi|12655155|gb|AAH01432.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|13279032|gb|AAH04254.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|15990432|gb|AAH15580.1| HNRPF protein [Homo sapiens]
gi|67967777|dbj|BAE00371.1| unnamed protein product [Macaca fascicularis]
gi|76780063|gb|AAI06009.1| HNRPF protein [Homo sapiens]
gi|119607001|gb|EAW86595.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607002|gb|EAW86596.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607003|gb|EAW86597.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607004|gb|EAW86598.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607005|gb|EAW86599.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|123997411|gb|ABM86307.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|157929032|gb|ABW03801.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|168277548|dbj|BAG10752.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|193785530|dbj|BAG50896.1| unnamed protein product [Homo sapiens]
gi|343959614|dbj|BAK63664.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|355562388|gb|EHH18982.1| Heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|355782737|gb|EHH64658.1| Heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
gi|380785399|gb|AFE64575.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|384946770|gb|AFI36990.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|410262002|gb|JAA18967.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262004|gb|JAA18968.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262006|gb|JAA18969.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262008|gb|JAA18970.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299574|gb|JAA28387.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299576|gb|JAA28388.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299578|gb|JAA28389.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299580|gb|JAA28390.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299582|gb|JAA28391.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340859|gb|JAA39376.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340861|gb|JAA39377.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340863|gb|JAA39378.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340865|gb|JAA39379.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340867|gb|JAA39380.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340869|gb|JAA39381.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|410989009|ref|XP_004000762.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Felis catus]
Length = 432
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGF 140
+ N++HRY+ELFLNS++ G G +
Sbjct: 349 KANMQHRYVELFLNSTAGTTGASGGAY 375
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|402910822|ref|XP_003918047.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Papio
anubis]
Length = 386
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 243 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 302
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGF 140
+ N++HRY+ELFLNS++ G G +
Sbjct: 303 KANMQHRYVELFLNSTAGTTGASGGAY 329
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+GLPF ++++IV FFS +VP + + ++++ GR +GEA V FA+ E A +A+ K +
Sbjct: 70 QGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKE 128
Query: 116 NIRHRYIELFLNS 128
I HRYIE+F +S
Sbjct: 129 RIGHRYIEIFKSS 141
>gi|383276062|dbj|BAM09220.1| heterogenous nuclear ribonucleoprotein F, partial [Ursus thibetanus
japonicus]
Length = 150
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 53 RYGDGEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 111
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 112 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 143
>gi|16876910|gb|AAH16736.1| HNRPF protein [Homo sapiens]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|402880032|ref|XP_003903619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Papio anubis]
gi|402880034|ref|XP_003903620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Papio anubis]
gi|402880036|ref|XP_003903621.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Papio anubis]
gi|402880038|ref|XP_003903622.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Papio anubis]
gi|402880040|ref|XP_003903623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Papio anubis]
gi|402880042|ref|XP_003903624.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Papio anubis]
gi|402880044|ref|XP_003903625.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Papio anubis]
gi|402880046|ref|XP_003903626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Papio anubis]
gi|402880048|ref|XP_003903627.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9
[Papio anubis]
gi|402880050|ref|XP_003903628.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Papio anubis]
gi|402880052|ref|XP_003903629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Papio anubis]
gi|402880054|ref|XP_003903630.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Papio anubis]
gi|402880056|ref|XP_003903631.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Papio anubis]
gi|402880058|ref|XP_003903632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Papio anubis]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++I+ FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|296220055|ref|XP_002756146.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Callithrix jacchus]
gi|403276785|ref|XP_003930066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Saimiri boliviensis boliviensis]
gi|403276787|ref|XP_003930067.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Saimiri boliviensis boliviensis]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|194383864|dbj|BAG59290.1| unnamed protein product [Homo sapiens]
Length = 338
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 198 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 256
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 257 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 18 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 77
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 78 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 111
>gi|58476100|gb|AAH89313.1| Hnrpf protein [Mus musculus]
Length = 395
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 255 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 313
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 314 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 345
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 66 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 125
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 126 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 168
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + GR SGEA V + +D A+ KDR ++ HRYIE+F
Sbjct: 26 IYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 66
>gi|19527048|ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|25742579|ref|NP_071792.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546815|ref|NP_001032362.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546817|ref|NP_001032363.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546819|ref|NP_001032364.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|261878597|ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878599|ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878601|ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878603|ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878605|ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878607|ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|81911895|sp|Q794E4.3|HNRPF_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|81918016|sp|Q9Z2X1.3|HNRPF_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|4153896|dbj|BAA37095.1| ribonucleoprotein F [Rattus norvegicus]
gi|17390408|gb|AAH18185.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|19343662|gb|AAH25481.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|22137695|gb|AAH29163.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|23274049|gb|AAH33483.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|66911957|gb|AAH97275.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|73909045|gb|AAI03635.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|148667168|gb|EDK99584.1| mCG133010, isoform CRA_a [Mus musculus]
gi|149049635|gb|EDM02089.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049636|gb|EDM02090.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049637|gb|EDM02091.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049638|gb|EDM02092.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049639|gb|EDM02093.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049640|gb|EDM02094.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>gi|291190682|ref|NP_001167168.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
gi|223648432|gb|ACN10974.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
Length = 396
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V + +GR +GEADV FATHEDA+ AMSKD
Sbjct: 256 HCVHMRGLPYRATETDIYNFFSPLNPVRVHVEIGPDGRVTGEADVEFATHEDAVAAMSKD 315
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ GG GS
Sbjct: 316 KANMQHRYVELFLNSTA--GGSNGS 338
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + SGP G V +RGLPF ++++IV F S +VP + + ++++ GR +G
Sbjct: 91 WVMKHSGPNSPETTGDGLVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ + A +A+ K + I HRYIE+F +S
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ + ++ FFS + I++ + GRPSGEA V +D A
Sbjct: 7 YVVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIA 66
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRY+E+F
Sbjct: 67 VKKDRETMGHRYVEVF 82
>gi|5911913|emb|CAB55897.1| hypothetical protein [Homo sapiens]
gi|7739441|gb|AAF68848.1| hnRNP 2H9C [Homo sapiens]
gi|119574666|gb|EAW54281.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574669|gb|EAW54284.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574672|gb|EAW54287.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574673|gb|EAW54288.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|193787147|dbj|BAG52353.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 62 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 121
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 122 KDKNNMQHRYIELFLNST 139
>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Meleagris gallopavo]
Length = 477
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +DR+ G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V
Sbjct: 270 FGSDRFGR---GMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRV 325
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLNS
Sbjct: 326 HIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 371
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 110 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 168
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 169 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 202
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 18 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 76
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 77 ESEEDVKLALKKDRETMGHRYVEVF 101
>gi|327277958|ref|XP_003223730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Anolis carolinensis]
Length = 341
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 194 GGHFVHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 253
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ +++HRYIELFLNS+
Sbjct: 254 KDKNHMQHRYIELFLNST 271
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFAT 102
N+SS G TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA V FA+
Sbjct: 11 NDSSSDG--TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGEAFVQFAS 67
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSS 130
E A +A+ K + I HRYIE+F +S S
Sbjct: 68 KEIAEKALGKHKERIGHRYIEIFKSSKS 95
>gi|62510677|sp|Q60HC3.3|HNRPF_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|52782291|dbj|BAD51992.1| heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|332244100|ref|XP_003271210.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Nomascus leucogenys]
gi|332244102|ref|XP_003271211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Nomascus leucogenys]
gi|332244104|ref|XP_003271212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Nomascus leucogenys]
Length = 415
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]
Length = 492
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 312 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 371
Query: 114 RTNIRHRYIELFLNS 128
+ N++HRY+ELFLNS
Sbjct: 372 KANMQHRYVELFLNS 386
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 183
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 184 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 217
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 33 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 91
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 92 ESEEDVKLALKKDRETMGHRYVEVF 116
>gi|45709575|gb|AAH67720.1| Zgc:85960 protein [Danio rerio]
Length = 302
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 149 HCVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 208
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 209 KANMQHRYVELFLNSTA 225
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 13/83 (15%)
Query: 66 VNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY 121
V K + FFS +VP + + ++++ GR +GEA V FA+ + A +A+ K + I HRY
Sbjct: 13 VARKRLCSFFSGLEIVPNGITLPVDFQ-GRSTGEAFVQFASQDIAEKALKKHKERIGHRY 71
Query: 122 IELFLNSSS--------PRGGVG 136
IE+F +S + PR G+G
Sbjct: 72 IEIFKSSRAEVRTHYEPPRKGMG 94
>gi|410957462|ref|XP_003985346.1| PREDICTED: G-rich sequence factor 1 [Felis catus]
Length = 361
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y NG+ +GEADV+F THEDA+ AM KD
Sbjct: 282 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKD 341
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 342 RSHVHHRYIELFLN-SCPKG 360
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+V+FFS ++ +N ++G+ G+A + + +D +
Sbjct: 32 YLIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQK 90
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 91 ALEKHRMYMGQRYVEVY 107
>gi|395735012|ref|XP_002814888.2| PREDICTED: G-rich sequence factor 1 [Pongo abelii]
Length = 459
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 380 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMHKD 439
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 440 RSHVYHRYIELFLN-SCPKG 458
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVY 99
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA VY
Sbjct: 253 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVY 297
>gi|344275083|ref|XP_003409343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Loxodonta africana]
Length = 335
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 179 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 238
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 239 KDKNNMQHRYIELFLNST 256
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|392355325|ref|XP_003752006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Rattus
norvegicus]
gi|148700118|gb|EDL32065.1| mCG11326, isoform CRA_b [Mus musculus]
gi|149043912|gb|EDL97363.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 331
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 178 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 238 KDKNNMQHRYIELFLNST 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|26345420|dbj|BAC36361.1| unnamed protein product [Mus musculus]
Length = 421
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>gi|296480483|tpg|DAA22598.1| TPA: mCG11326-like [Bos taurus]
Length = 290
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 137 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 196
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 197 KDKNNMQHRYIELFLNST 214
>gi|54020837|ref|NP_001005664.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus (Silurana)
tropicalis]
gi|49257786|gb|AAH74690.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Xenopus (Silurana)
tropicalis]
gi|89269950|emb|CAJ83715.1| hnrph1 [Xenopus (Silurana) tropicalis]
Length = 441
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKD 336
Query: 114 RTNIRHRYIELFLNSS 129
+ N++HRY+ELFLNS+
Sbjct: 337 KANMQHRYVELFLNST 352
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 152
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 153 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +I +FFS + I++ + GRPSGEA V F T ED A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLAL 70
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 71 KKDRATMGHRYVEVF 85
>gi|14141159|ref|NP_067676.2| heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]
gi|291404273|ref|XP_002718502.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Oryctolagus cuniculus]
gi|296220548|ref|XP_002756353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Callithrix jacchus]
gi|332218215|ref|XP_003258254.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Nomascus leucogenys]
gi|332834182|ref|XP_003312632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan troglodytes]
gi|338716820|ref|XP_003363523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Equus caballus]
gi|345798943|ref|XP_860394.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Canis lupus familiaris]
gi|397520485|ref|XP_003830347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan paniscus]
gi|402880660|ref|XP_003903916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Papio anubis]
gi|403273869|ref|XP_003928720.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Saimiri boliviensis boliviensis]
gi|410975231|ref|XP_003994037.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Felis catus]
gi|426364934|ref|XP_004049546.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Gorilla gorilla gorilla]
gi|7739443|gb|AAF68849.1|AF132361_1 hnRNP 2H9A [Homo sapiens]
gi|7739440|gb|AAF68847.1| hnRNP 2H9A [Homo sapiens]
gi|24981041|gb|AAH39824.1| Heterogeneous nuclear ribonucleoprotein H3 (2H9) [Homo sapiens]
gi|119574667|gb|EAW54282.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_c
[Homo sapiens]
gi|158256526|dbj|BAF84236.1| unnamed protein product [Homo sapiens]
gi|261861160|dbj|BAI47102.1| heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
gi|296472170|tpg|DAA14285.1| TPA: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Bos taurus]
gi|380812320|gb|AFE78034.1| heterogeneous nuclear ribonucleoprotein H3 isoform b [Macaca
mulatta]
gi|410221432|gb|JAA07935.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258986|gb|JAA17459.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302444|gb|JAA29822.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342071|gb|JAA39982.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
Length = 331
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 178 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 238 KDKNNMQHRYIELFLNST 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|395820624|ref|XP_003783663.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Otolemur garnettii]
Length = 331
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 178 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 238 KDKNNMQHRYIELFLNST 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|344275081|ref|XP_003409342.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Loxodonta africana]
Length = 350
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 194 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 253
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 254 KDKNNMQHRYIELFLNST 271
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|354477668|ref|XP_003501041.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Cricetulus griseus]
gi|344247616|gb|EGW03720.1| Heterogeneous nuclear ribonucleoprotein H3 [Cricetulus griseus]
Length = 325
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 178 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 238 KDKNNMQHRYIELFLNST 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|119637823|ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus]
gi|157818423|ref|NP_001102002.1| heterogeneous nuclear ribonucleoprotein H3 [Rattus norvegicus]
gi|148700117|gb|EDL32064.1| mCG11326, isoform CRA_a [Mus musculus]
gi|149043914|gb|EDL97365.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_c [Rattus norvegicus]
gi|182887935|gb|AAI60206.1| Heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
Length = 346
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|14141157|ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
gi|343780936|ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa]
gi|388452508|ref|NP_001253678.1| heterogeneous nuclear ribonucleoprotein H3 [Macaca mulatta]
gi|73952781|ref|XP_536369.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Canis lupus familiaris]
gi|149689928|ref|XP_001503654.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Equus caballus]
gi|291404271|ref|XP_002718501.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Oryctolagus cuniculus]
gi|296220546|ref|XP_002756352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Callithrix jacchus]
gi|332218213|ref|XP_003258253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Nomascus leucogenys]
gi|332834180|ref|XP_521495.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan troglodytes]
gi|397520483|ref|XP_003830346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan paniscus]
gi|402880658|ref|XP_003903915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Papio anubis]
gi|403273867|ref|XP_003928719.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Saimiri boliviensis boliviensis]
gi|410975227|ref|XP_003994035.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Felis catus]
gi|410975229|ref|XP_003994036.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Felis catus]
gi|426364932|ref|XP_004049545.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Gorilla gorilla gorilla]
gi|23503095|sp|P31942.2|HNRH3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H3;
Short=hnRNP H3; AltName: Full=Heterogeneous nuclear
ribonucleoprotein 2H9; Short=hnRNP 2H9
gi|5542020|gb|AAD45179.1|L32610_1 ribonucleoprotein [Homo sapiens]
gi|7739436|gb|AAF68843.1| hnRNP 2H9 [Homo sapiens]
gi|119574665|gb|EAW54280.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|119574670|gb|EAW54285.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|351702487|gb|EHB05406.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
gi|355562560|gb|EHH19154.1| hypothetical protein EGK_19802 [Macaca mulatta]
gi|355782891|gb|EHH64812.1| hypothetical protein EGM_18125 [Macaca fascicularis]
gi|380784275|gb|AFE64013.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|380812322|gb|AFE78035.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|410221428|gb|JAA07933.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410221430|gb|JAA07934.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258984|gb|JAA17458.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258988|gb|JAA17460.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302442|gb|JAA29821.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302446|gb|JAA29823.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342067|gb|JAA39980.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342069|gb|JAA39981.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|432106705|gb|ELK32357.1| Heterogeneous nuclear ribonucleoprotein H3 [Myotis davidii]
gi|440895821|gb|ELR47915.1| Heterogeneous nuclear ribonucleoprotein H3 [Bos grunniens mutus]
Length = 346
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|403281341|ref|XP_003945266.1| PREDICTED: LOW QUALITY PROTEIN: G-rich sequence factor 1 [Saimiri
boliviensis boliviensis]
Length = 439
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 357 PCLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 416
Query: 111 SKDRTNIRHRYIELFLNSSSPRG 133
KDR+++ HRYIELFLN S P+G
Sbjct: 417 LKDRSHVHHRYIELFLN-SCPKG 438
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDI+DFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIIDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 114 RTNIRHRYIELFL 126
R I +R ++ L
Sbjct: 312 REEIGNRXVKQIL 324
>gi|395820622|ref|XP_003783662.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Otolemur garnettii]
Length = 346
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|354477666|ref|XP_003501040.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Cricetulus griseus]
Length = 340
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|426255654|ref|XP_004021463.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Ovis aries]
Length = 331
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 178 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 237
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 238 KDKNNMQHRYIELFLNST 255
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASMEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|7739445|gb|AAF68850.1|AF132362_1 hnRNP 2H9B [Homo sapiens]
gi|7739437|gb|AAF68844.1| hnRNP 2H9B [Homo sapiens]
Length = 297
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 144 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 203
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 204 KDKNNMQHRYIELFLNST 221
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
GR +GEA V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 4 QGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRS 45
>gi|301755896|ref|XP_002913784.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Ailuropoda melanoleuca]
gi|281346969|gb|EFB22553.1| hypothetical protein PANDA_001623 [Ailuropoda melanoleuca]
Length = 346
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|242007190|ref|XP_002424425.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
gi|212507825|gb|EEB11687.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
Length = 412
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
H +HMRGLPFR ++D+ DFF PV+P+ +D+ +GRPSGEADV F TH+DA+ AMSK+
Sbjct: 302 HCIHMRGLPFRATKQDVADFFRPVIPLSIDLLTEDDGRPSGEADVEFRTHDDAVLAMSKN 361
Query: 114 RTNIRHRYIELFLNSSSPR 132
+ +++HRYIELFLNS+ +
Sbjct: 362 KNHMQHRYIELFLNSTPAK 380
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SG T V +RGLPF ++++I FF+ +VP + +
Sbjct: 84 FKSKRSEMDWVIKRSGSNLETALDDGCVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPM 143
Query: 88 KN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+ GR +GEA V F + A +A+ K + I HRYIE+F +S
Sbjct: 144 DSRGRSTGEAYVQFKNKDIAEKALLKHKEKIAHRYIEIFRSS 185
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + MRGLP+ +++I+ FF+ V++ I + GRPSGEA V T +D +
Sbjct: 9 YVIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHI-IMTREGRPSGEAYVEMETDQDIEE 67
Query: 109 AMSKDRTNIRHRYIELFLNSSS 130
A+ KDR + RY+E+F + S
Sbjct: 68 ALKKDRDYMGTRYMEVFKSKRS 89
>gi|431914602|gb|ELK15790.1| Heterogeneous nuclear ribonucleoprotein F [Pteropus alecto]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S + + Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|73997922|ref|XP_848697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Canis lupus familiaris]
gi|73997926|ref|XP_856894.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Canis lupus familiaris]
gi|73997930|ref|XP_856973.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Canis lupus familiaris]
gi|301763831|ref|XP_002917330.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Ailuropoda melanoleuca]
gi|301763833|ref|XP_002917331.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 2
[Ailuropoda melanoleuca]
gi|301763835|ref|XP_002917332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 3
[Ailuropoda melanoleuca]
gi|301763837|ref|XP_002917333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 4
[Ailuropoda melanoleuca]
gi|410975641|ref|XP_003994239.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Felis catus]
gi|410975643|ref|XP_003994240.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Felis catus]
gi|410975645|ref|XP_003994241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Felis catus]
gi|281338546|gb|EFB14130.1| hypothetical protein PANDA_005550 [Ailuropoda melanoleuca]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|348560746|ref|XP_003466174.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cavia
porcellus]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 288 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 347
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 348 RANMQHRYIELFLNSTT 364
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 94 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 153
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 187
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
>gi|344274318|ref|XP_003408964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Loxodonta africana]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 274 RYGDSEFAVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 332
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 333 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 364
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS ++P + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIMPNGITLPV 144
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 187
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + ED A
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHF-IYTREGRQSGEAFVELESEEDVKMA 69
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR ++ HRYIE+F
Sbjct: 70 LKKDRESMGHRYIEVF 85
>gi|149690626|ref|XP_001490069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Equus caballus]
gi|338717722|ref|XP_003363688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Equus
caballus]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA + + +D A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFIELESEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|335775266|gb|AEH58514.1| heterogeneous nuclear ribonucleoprotein-like protein [Equus
caballus]
Length = 337
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 4/90 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYF 100
G+ V ++G H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV F
Sbjct: 202 GEFTVQSTTG---HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 258
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
ATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 259 ATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 18 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 77
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 78 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 111
>gi|215274142|sp|Q12849.3|GRSF1_HUMAN RecName: Full=G-rich sequence factor 1; Short=GRSF-1
Length = 480
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 461 RSHVHHRYIELFLN-SCPKG 479
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 312 EEIGNRYIEIF 322
>gi|426255652|ref|XP_004021462.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Ovis aries]
Length = 346
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASMEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|348575706|ref|XP_003473629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Cavia
porcellus]
Length = 372
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 219 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 278
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 279 KDKNNMQHRYIELFLNST 296
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 29 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 87
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 88 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 120
>gi|311262314|ref|XP_003129120.1| PREDICTED: G-rich sequence factor 1-like [Sus scrofa]
Length = 479
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 400 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 459
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 460 RSHVHHRYIELFLN-SCPKG 478
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|62460420|ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|426255584|ref|XP_004021428.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Ovis aries]
gi|426255586|ref|XP_004021429.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Ovis aries]
gi|426255588|ref|XP_004021430.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Ovis aries]
gi|75070041|sp|Q5E9J1.3|HNRPF_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|59858223|gb|AAX08946.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|74355042|gb|AAI02956.1| Heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|296472206|tpg|DAA14321.1| TPA: heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|440903473|gb|ELR54126.1| Heterogeneous nuclear ribonucleoprotein F, partial [Bos grunniens
mutus]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++I+ FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKLA 70
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR ++ HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|417400513|gb|JAA47194.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +D+ +F S + ++ I + GR SGEA V + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR ++ HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>gi|395851365|ref|XP_003798231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 415
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSAT 365
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FF+ +VP + + G+ +GE
Sbjct: 94 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVLFFTGLEIVPNGITLPVDPEGKITGE 153
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 187
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S P + Y + GR SGEA V + +D A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHFIYTREGRQSGEAFVELGSEDDVKMAL 70
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 71 KKDRESMGHRYIEVF 85
>gi|291412565|ref|XP_002722547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Oryctolagus cuniculus]
Length = 415
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|355694919|gb|AER99830.1| heteroproteinous nuclear ribonucleoprotein F [Mustela putorius
furo]
Length = 342
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 4/90 (4%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYF 100
G+ V ++G H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV F
Sbjct: 223 GEFTVQSTTG---HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEF 279
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
ATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 280 ATHEEAVAAMSKDRANMQHRYIELFLNSTT 309
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 30 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 89
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 90 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 132
>gi|351699543|gb|EHB02462.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 372
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 246 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 305
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 306 RANMQHRYIELFLNSTT 322
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 187
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGR 91
GP G+ +V V +RGLP+ + +D+ +F S V V+ I + GR
Sbjct: 3 GPERGEAYV----------VKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGR 51
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
SGEA V + +D A+ KDR ++ HRYIE+F
Sbjct: 52 QSGEAFVELESEDDVKMALKKDRESMGHRYIEVF 85
>gi|159155917|gb|AAI54577.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V + +GR +GEADV FATHEDA+ AMSKD
Sbjct: 251 HCVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKD 310
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 311 KANMQHRYVELFLNSTA 327
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP G V +RGLPF ++++IV FF+ +VP + + ++++ GR +G
Sbjct: 91 WVLKHTGPNCPDTGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ + A +A+ K + I HRYIE+F +S
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS + I++ + GRPSGEA V F + ED A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 68 KKDRETMGHRYVEVFKSNS 86
>gi|45387779|ref|NP_991247.1| heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
gi|41107558|gb|AAH65439.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V + +GR +GEADV FATHEDA+ AMSKD
Sbjct: 251 HCVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPDGRVTGEADVEFATHEDAVAAMSKD 310
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 311 KANMQHRYVELFLNSTA 327
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP G V +RGLPF ++++IV FF+ +VP + + ++++ GR +G
Sbjct: 91 WVLKHTGPNCPETGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ + A +A+ K + I HRYIE+F +S
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIFKSS 183
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS + Y + GRPSGEA V F + ED A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 68 KKDRETMGHRYVEVFKSNS 86
>gi|417409638|gb|JAA51317.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 315
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 162 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 221
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 222 KDKNNMQHRYIELFLNST 239
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 78 VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+VP + + ++++ GR +GEA V FA+ E A +A+ K + I HRYIE+F +S S
Sbjct: 10 IVPNGITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRSSRS 63
>gi|147906713|ref|NP_001086923.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|50417963|gb|AAH77770.1| Hnrph2-prov protein [Xenopus laevis]
gi|84569955|gb|AAI10708.1| Hnrph2 protein [Xenopus laevis]
Length = 456
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKD 336
Query: 114 RTNIRHRYIELFLNSS 129
+ N++HRY+ELFLNS+
Sbjct: 337 KANMQHRYVELFLNST 352
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 152
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 153 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +I +FFS + I++ + GRPSGEA V F T ED +
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 71 KKDRATMGHRYVEVF 85
>gi|417409472|gb|JAA51238.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 300
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 147 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 206
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 207 KDKNNMQHRYIELFLNST 224
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 78 VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+VP + + ++++ GR +GEA V FA+ E A +A+ K + I HRYIE+F +S S
Sbjct: 10 IVPNGITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRSSRS 63
>gi|34533956|dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 368 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 427
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 428 RSHVHHRYIELFLN-SCPKG 446
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NE+DIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 218 VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 278 REEIGNRYIEIF 289
>gi|517196|gb|AAC95399.1| G-rich sequence factor-1 [Homo sapiens]
Length = 424
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 345 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 404
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 405 RSHVHHRYIELFLN-SCPKG 423
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 195 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 254
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 255 REEIGNRYIEIF 266
>gi|380812104|gb|AFE77927.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
gi|380812106|gb|AFE77928.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 400 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 459
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 460 RSHVHHRYIELFLN-SCPKG 478
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|426344574|ref|XP_004038836.1| PREDICTED: G-rich sequence factor 1 [Gorilla gorilla gorilla]
Length = 362
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R++I HRYIELFLN S P+G
Sbjct: 343 RSHIHHRYIELFLN-SCPKG 361
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|388452478|ref|NP_001253931.1| G-rich sequence factor 1 [Macaca mulatta]
gi|383417775|gb|AFH32101.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 400 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 459
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 460 RSHVHHRYIELFLN-SCPKG 478
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
>gi|21748975|dbj|BAC03513.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 336 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 395
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 396 RSHVHHRYIELFLN-SCPKG 414
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 186 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 245
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 246 REEIGNRYIEIF 257
>gi|193786243|dbj|BAG51526.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 333 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 392
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 393 RSHVHHRYIELFLN-SCPKG 411
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 183 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 242
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 243 REEIGNRYIEIF 254
>gi|148237217|ref|NP_001085008.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|47507485|gb|AAH70969.1| MGC78776 protein [Xenopus laevis]
Length = 441
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI FFSP+ PV V I +GR +GEADV FA+HEDA+ AMSKD
Sbjct: 277 HCVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFASHEDAVAAMSKD 336
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 337 KANMQHRYVELFLNSTA 353
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 152
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 153 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +I +FFS + V+ I + GRPSGEA V F T +D A
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHF-IYTREGRPSGEAFVEFETEDDLQLA 69
Query: 110 MSKDRTNIRHRYIELFLNSS 129
+ KDR + HRY+E+F ++S
Sbjct: 70 VKKDRATMAHRYVEVFKSNS 89
>gi|426231834|ref|XP_004009942.1| PREDICTED: G-rich sequence factor 1 [Ovis aries]
Length = 362
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 253 AFESEKEIESPKEMSEKLP--EAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|432852531|ref|XP_004067294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 398
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 69/93 (74%), Gaps = 6/93 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR +E D+ FFSP++P+ V I+ NG+ +GEADV F +HEDA+ AMSKD
Sbjct: 295 HFVHMRGLPFRASEGDVAKFFSPLIPLRVHIDVAPNGKSTGEADVEFRSHEDAVAAMSKD 354
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELW 146
+ +++HRYIELFLNS++ G+ SRSE +
Sbjct: 355 KNHMQHRYIELFLNSTAS-----GAQTSRSERY 382
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + +GP + + +RGLPF ++++IV FFS +VP + + +
Sbjct: 83 FKSNRSEMDWVLKRNGPADYDSCSGCMLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPV 142
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS--------PRGGVGG 137
+Y+ GR +GEA V FA+ E A +A+ K + I HRYIE+F +S + PR G+GG
Sbjct: 143 DYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYDVPRRGLGG 201
Query: 138 S 138
Sbjct: 202 Q 202
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN------YKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ ++++ FFS + IN K GRPSGEA + T ED
Sbjct: 8 YVVRIRGLPWSCTQEEVASFFSDC-DIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKN 66
Query: 109 AMSKDRTNIRHRYIELFLNSSS 130
A++KDR + HRYIE+F ++ S
Sbjct: 67 ALAKDRKYMGHRYIEVFKSNRS 88
>gi|355749346|gb|EHH53745.1| hypothetical protein EGM_14439, partial [Macaca fascicularis]
Length = 362
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 281 SQHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAML 340
Query: 112 KDRTNIRHRYIELFLNSSSPRG 133
KDR+++ HRYIELFLN S P+G
Sbjct: 341 KDRSHVHHRYIELFLN-SCPKG 361
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|118151012|ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus]
gi|117306552|gb|AAI26704.1| G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 481
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 402 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 461
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 462 RSHVHHRYIELFLN-SCPKG 480
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 312 REEIGNRYIEIF 323
>gi|384946772|gb|AFI36991.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|349605885|gb|AEQ00971.1| Heteroproteinous nuclear ribonucleoprotein H2-like protein, partial
[Equus caballus]
Length = 270
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 110 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 169
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 170 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 206
>gi|330864791|ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus]
Length = 317
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
+D+ N++HRYIELFLNS+
Sbjct: 253 RDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|90084329|dbj|BAE91006.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 299 RSHVHHRYIELFLN-SCPKG 317
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 149 REEIGNRYIEIF 160
>gi|410912106|ref|XP_003969531.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 371
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 65/84 (77%), Gaps = 4/84 (4%)
Query: 51 GPGHHT---VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDA 106
GPG H+ VHMRGLPFR E D+ FFSP+ P+ V I++ NG+ +GEADV F +HEDA
Sbjct: 256 GPGFHSGHFVHMRGLPFRATEGDVAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDA 315
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+ AMSKD+ +++HRYIELFLNS+S
Sbjct: 316 VAAMSKDKNHMQHRYIELFLNSTS 339
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 19/112 (16%)
Query: 45 WVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + SGP + T+ +RGLPF ++++IV FFS +VP + + ++Y+ GR +G
Sbjct: 92 WVLKRSGPADYDSCSGCTLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQ-GRSTG 150
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS--------PRGGVGGS 138
EA V FA+ E A +A+ K + I HRYIE+F +S + PR G+GG
Sbjct: 151 EAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYELPRRGMGGQ 202
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY----VDINY-KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ ++++ FFS + V Y K GRPSGEA + T ED A
Sbjct: 8 YVVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNA 67
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
++KDR + HRYIE+F ++ S
Sbjct: 68 LAKDRKYMGHRYIEVFKSNRS 88
>gi|148688440|gb|EDL20387.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus
musculus]
Length = 460
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 300 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 359
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 360 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 396
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 106 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 164
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 165 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 198
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 23 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 82
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 83 KKDRETMGHRYVEVFKSNS 101
>gi|149193319|ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens]
gi|119626036|gb|EAX05631.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626037|gb|EAX05632.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626038|gb|EAX05633.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|193786999|dbj|BAG51822.1| unnamed protein product [Homo sapiens]
gi|193787731|dbj|BAG52934.1| unnamed protein product [Homo sapiens]
gi|193788237|dbj|BAG53131.1| unnamed protein product [Homo sapiens]
gi|193788520|dbj|BAG53414.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 299 RSHVHHRYIELFLN-SCPKG 317
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 149 REEIGNRYIEIF 160
>gi|194389792|dbj|BAG60412.1| unnamed protein product [Homo sapiens]
Length = 355
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 195 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 254
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 255 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 291
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAM--- 107
V +RGLP+ + +++ FFS I + GRPSGEA V + E+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 108 -QAMSKDRTNIRHRYIELFLNS 128
+A+ K + I HRYIE+F +S
Sbjct: 72 EKALKKHKERIGHRYIEIFKSS 93
>gi|194376648|dbj|BAG57470.1| unnamed protein product [Homo sapiens]
Length = 404
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 244 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 303
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 304 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 340
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 103 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 142
>gi|431895711|gb|ELK05132.1| Heterogeneous nuclear ribonucleoprotein H2 [Pteropus alecto]
Length = 422
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 262 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 321
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 322 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 358
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 68 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 126
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 127 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 160
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 85 INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
I + GRPSGEA V + ++ A+ KDR + HRY+E+F ++S
Sbjct: 19 IYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNS 63
>gi|151555768|gb|AAI49234.1| GRSF1 protein [Bos taurus]
Length = 362
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKIP--EAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|62078769|ref|NP_001014041.1| heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus]
gi|81910860|sp|Q6AY09.1|HNRH2_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|50927747|gb|AAH79240.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Rattus norvegicus]
gi|149055432|gb|EDM07016.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
gi|149055433|gb|EDM07017.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|397475207|ref|XP_003809035.1| PREDICTED: G-rich sequence factor 1 [Pan paniscus]
Length = 362
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 343 RSHVHHRYIELFLN-SCPKG 361
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|390475715|ref|XP_003735008.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Callithrix jacchus]
Length = 421
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 268 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 327
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++H+YIELFLNS+
Sbjct: 328 KDKNNMQHQYIELFLNST 345
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PV 78
F D+ ++ G F WV + +GP TV +RGLPF ++++IV FF +
Sbjct: 72 FLEDQVSEVKGAFKSNGIEMDWVMKHNGPNDARDGTVRLRGLPFGCSKEEIVQFFQGLEI 131
Query: 79 VP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
VP + + ++Y+ GR +GEA V FA+ E A+ K + I HRYIE+F +S
Sbjct: 132 VPNGITLMMDYQ-GRSTGEAFVQFASKEITENALGKHKERIGHRYIEIFRSS 182
>gi|355757549|gb|EHH61074.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca fascicularis]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF + ++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSNEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|221040122|dbj|BAH11824.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 343 RSHVHHRYIELFLN-SCPKG 361
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|383417967|gb|AFH32197.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410224062|gb|JAA09250.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|115496520|ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|109892458|sp|Q3SZF3.1|HNRH2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|74354329|gb|AAI02895.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Bos taurus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|440905001|gb|ELR55451.1| G-rich sequence factor 1, partial [Bos grunniens mutus]
Length = 362
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 253 AFESEKEIELPKEMSEKIP--EAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 310
Query: 83 VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ + Y + G+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 311 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 361
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|432101976|gb|ELK29797.1| Heterogeneous nuclear ribonucleoprotein H2 [Myotis davidii]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|417401138|gb|JAA47465.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|221042436|dbj|BAH12895.1| unnamed protein product [Homo sapiens]
Length = 393
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 314 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 373
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 374 RSHVHHRYIELFLN-SCPKG 392
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 164 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 223
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 224 REEIGNRYIEIF 235
>gi|355705000|gb|EHH30925.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP---------VVPVYVDINYKNGRPSGEADVYFATHEDA 106
V + LP+ + +++ FFS + +Y + GRPSGEA V + E+
Sbjct: 12 VVKVSALPWSCSADEVMRFFSDRKIQNGTSGIRFIYT----REGRPSGEAFVELESEEEV 67
Query: 107 MQAMSKDRTNIRHRYIELFLNSS 129
A+ KDR + HRY+E+F ++S
Sbjct: 68 KLALKKDRETMGHRYVEVFKSNS 90
>gi|148707962|gb|EDL39909.1| mCG129396 [Mus musculus]
Length = 415
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGHR-VHMRGLPYKATENDIYNFFSPFNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + G SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGSQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ H YIE+F
Sbjct: 70 ALKKDRESMGHPYIEVF 86
>gi|9845253|ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus]
gi|354474917|ref|XP_003499676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Cricetulus griseus]
gi|354474919|ref|XP_003499677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Cricetulus griseus]
gi|46577330|sp|P70333.1|HNRH2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1666700|gb|AAB47243.1| Murine homolog of human ftp-3 [Mus musculus]
gi|13529467|gb|AAH05461.1| Hnrph2 protein [Mus musculus]
gi|26346655|dbj|BAC36976.1| unnamed protein product [Mus musculus]
gi|74139495|dbj|BAE40886.1| unnamed protein product [Mus musculus]
gi|74207684|dbj|BAE40087.1| unnamed protein product [Mus musculus]
gi|74211079|dbj|BAE37634.1| unnamed protein product [Mus musculus]
gi|148688439|gb|EDL20386.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|148688441|gb|EDL20388.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|344238071|gb|EGV94174.1| Heterogeneous nuclear ribonucleoprotein H2 [Cricetulus griseus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|355687360|gb|EHH25944.1| G-rich sequence factor 1, partial [Macaca mulatta]
Length = 362
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 343 RSHVHHRYIELFLN-SCPKG 361
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|9624998|ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|74099697|ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|197100479|ref|NP_001125156.1| heterogeneous nuclear ribonucleoprotein H2 [Pongo abelii]
gi|302565696|ref|NP_001180922.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|350536397|ref|NP_001233423.1| heterogeneous nuclear ribonucleoprotein H2 [Pan troglodytes]
gi|109131568|ref|XP_001094080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Macaca mulatta]
gi|296236002|ref|XP_002763136.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Callithrix jacchus]
gi|332254772|ref|XP_003276506.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Nomascus
leucogenys]
gi|390480025|ref|XP_003735831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Callithrix
jacchus]
gi|403298789|ref|XP_003940188.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Saimiri boliviensis boliviensis]
gi|403298791|ref|XP_003940189.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426396685|ref|XP_004064561.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Gorilla gorilla gorilla]
gi|426396687|ref|XP_004064562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Gorilla gorilla gorilla]
gi|426396689|ref|XP_004064563.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Gorilla gorilla gorilla]
gi|2500576|sp|P55795.1|HNRH2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=FTP-3; AltName:
Full=Heterogeneous nuclear ribonucleoprotein H';
Short=hnRNP H'
gi|75070864|sp|Q5RD26.1|HNRH2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1684915|gb|AAB64202.1| FTP3 [Homo sapiens]
gi|55727150|emb|CAH90331.1| hypothetical protein [Pongo abelii]
gi|119623269|gb|EAX02864.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660030|gb|AAI30346.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660336|gb|AAI30344.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|168277748|dbj|BAG10852.1| heterogeneous nuclear ribonucleoprotein H' [synthetic construct]
gi|313883006|gb|ADR82989.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|313883348|gb|ADR83160.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|343958876|dbj|BAK63293.1| heterogeneous nuclear ribonucleoprotein H' [Pan troglodytes]
gi|380812318|gb|AFE78033.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|384946774|gb|AFI36992.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410264162|gb|JAA20047.1| RPL36A-HNRNPH2 readthrough [Pan troglodytes]
gi|410303792|gb|JAA30496.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410303794|gb|JAA30497.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355365|gb|JAA44286.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355367|gb|JAA44287.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|74007970|ref|XP_861916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Canis lupus familiaris]
gi|345807788|ref|XP_862053.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 7
[Canis lupus familiaris]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|348570626|ref|XP_003471098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cavia
porcellus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|149755198|ref|XP_001493828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Equus
caballus]
gi|291393212|ref|XP_002713068.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Oryctolagus
cuniculus]
gi|291408077|ref|XP_002720410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Oryctolagus cuniculus]
gi|281341597|gb|EFB17181.1| hypothetical protein PANDA_019663 [Ailuropoda melanoleuca]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|335310367|ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
scrofa]
Length = 444
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 284 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 343
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 344 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 380
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEA 96
WV + +GP V +RGLPF ++++IV FFS +VP A
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN----GMXXXXXXXXA 150
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 151 FVQFASQEIAEKALKKHKERIGHRYIEIFKSS 182
>gi|426257857|ref|XP_004022538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Ovis aries]
gi|146231796|gb|ABQ12973.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|296471005|tpg|DAA13120.1| TPA: heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|440901707|gb|ELR52599.1| Heterogeneous nuclear ribonucleoprotein H2 [Bos grunniens mutus]
Length = 449
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|221041252|dbj|BAH12303.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 369 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 428
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 429 RSHVHHRYIELFLN-SCPKG 447
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 219 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 278
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 279 REEIGNRYIEIF 290
>gi|62898443|dbj|BAD97161.1| heterogeneous nuclear ribonucleoprotein H3 isoform a variant [Homo
sapiens]
Length = 346
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYI+LFLNS+
Sbjct: 253 KDKNNMQHRYIKLFLNST 270
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|194042674|ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
scrofa]
gi|335301642|ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
gi|350592730|ref|XP_003483523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
Length = 414
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATH++A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>gi|351714958|gb|EHB17877.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 414
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ P+ V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 288 HCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 347
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 348 RANMQHRYIELFLNSTT 364
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SGP V +RGLPF +++IV FFS +VP + + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
+ K G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 145 DPK-GKITGEAFVQFASQELAEKALWKHKERIGHRYIEVFKSSQ 187
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
>gi|349603147|gb|AEP99067.1| G-rich sequence factor 1-like protein, partial [Equus caballus]
Length = 361
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 282 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 341
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 342 RSHVHHRYIELFLN-SCPKG 360
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 191
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 192 REEIGNRYIEIF 203
>gi|338723562|ref|XP_001489151.2| PREDICTED: g-rich sequence factor 1 [Equus caballus]
Length = 362
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 343 RSHVHHRYIELFLN-SCPKG 361
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 193 REEIGNRYIEIF 204
>gi|291243063|ref|XP_002741419.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Saccoglossus kowalevskii]
Length = 628
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMSKD 113
H +HMRGLPFR +++I FF PV P V I Y++G R +GEADV FATHEDA+ MSKD
Sbjct: 426 HVIHMRGLPFRATDQEIRQFFQPVNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSKD 485
Query: 114 RTNIRHRYIELFLNSSS 130
+ +++HRYIELFLNSS
Sbjct: 486 KAHMQHRYIELFLNSSQ 502
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 45 WVNESSGPG-----HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEA 96
WV + SGP V +RGLPF ++++I FF + V I +GR +GEA
Sbjct: 179 WVIKRSGPNAVQDNDGCVRLRGLPFGCSKEEIAQFFGGLEIVANGITLPTDYHGRSTGEA 238
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
V F+T + A A+ K + I HRYIE+F +S
Sbjct: 239 YVQFSTKDIAENALGKHKERIGHRYIEIFKSS 270
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
+ + RGLP+ ++ FF + I + + GRPSGE + T ED A
Sbjct: 95 NVIRARGLPWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFIELETEEDVKVA 154
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ + ++ HRY+E+F + S
Sbjct: 155 LERHNDHMGHRYVEVFRSKKS 175
>gi|351714959|gb|EHB17878.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 413
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ P+ V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 287 HCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEEAVPAMSKD 346
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 347 RANMQHRYIELFLNSTT 363
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 85 FKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 144
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 145 DPEGKITGEAFVQFASQELAEKALRKHKERIGHRYIEVFKSSQQ 188
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 10 YVVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEDDVKM 68
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio]
gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio]
gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]
Length = 407
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMS D
Sbjct: 254 HCVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSND 313
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 314 KANMQHRYVELFLNSTA 330
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 19/110 (17%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP G V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 91 WVLKHTGPNCPETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS--------PRGGVG 136
EA V FA+ + A +A+ K + I HRYIE+F +S + PR G+G
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYEPPRKGMG 199
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV----YVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS + Y + GRPSGEA V + +D A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRY+E+F
Sbjct: 68 KKDRESMGHRYVEVF 82
>gi|351695486|gb|EHA98404.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 348
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 6/91 (6%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYF 100
G+ V ++G H VHMRGLP++ E DI +FFSP+ V V I + NGR +GEADV F
Sbjct: 210 GEFTVQSTTG---HCVHMRGLPYKATENDIYNFFSPLNAVRVHIEIRPNGRVTGEADVEF 266
Query: 101 ATHEDAMQAMS--KDRTNIRHRYIELFLNSS 129
AT+E+AM AMS KDRTNI+HRYIELFLNS+
Sbjct: 267 ATNEEAMAAMSKDKDRTNIQHRYIELFLNST 297
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLPF +++IV FFS +VP + + G+ +GEA V FA+ E A +A+ K
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKH 104
Query: 114 RTNIRHRYIELFLNS 128
+ I HRYIE+F +S
Sbjct: 105 KERIGHRYIEVFKSS 119
>gi|159163284|pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein H'
Length = 102
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 75
Query: 114 RTNIRHRYIELFLNSSS 130
+ N++HRY+ELFLNS++
Sbjct: 76 KANMQHRYVELFLNSTA 92
>gi|148670393|gb|EDL02340.1| mCG50680 [Mus musculus]
Length = 338
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGL ++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 198 RYGDSEFTVQSTTGH-CVHMRGLSYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 256
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 257 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 288
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 18 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 77
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 78 AFVQFASQELAEKALGKHKERIGHRYIEVFKSS 110
>gi|443701155|gb|ELT99751.1| hypothetical protein CAPTEDRAFT_226859 [Capitella teleta]
Length = 390
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H+VHMRGLPF+ E DIV+FF P+ PV + I+Y +G+ SG+ADV FATH++A +AMS+D
Sbjct: 270 HSVHMRGLPFQAAEDDIVEFFKPLAPVNIAIHYMPDGKASGQADVDFATHQEASEAMSRD 329
Query: 114 RTNIRHRYIELFLNSS 129
R ++ HRYIELFL SS
Sbjct: 330 RESMEHRYIELFLKSS 345
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 44 RWVNESSGPGH------HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSG 94
W+ + SGP + +RGLPF +++++ FFS +VP + + GR +G
Sbjct: 108 EWMVKRSGPNQVMGNNDAVIRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTG 167
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+A V FA+ + A +A K + I HRYIE+F +S
Sbjct: 168 DAFVQFASQDIAERAQQKHKEKIGHRYIEIFKSS 201
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY-----VDINY-KNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + ++ +F V + + + Y K+GRPSGEA + A+ ED +A
Sbjct: 17 IVRIRGLPWSASHDEVANFLEADVNIMGGRSGIHLTYTKDGRPSGEAYIELASEEDVAKA 76
Query: 110 MSKDRTNIRHRYIE 123
+ KD+ ++ RYIE
Sbjct: 77 LEKDKHHMGRRYIE 90
>gi|351714741|gb|EHB17660.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 396
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ V V I + NGR +GEADV
Sbjct: 274 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNAVRVHIEIRPNGRVTGEADV 332
Query: 99 YFATHEDAMQAMS--KDRTNIRHRYIELFLNSS 129
FAT+E+AM AMS KDRTNI+HRYIELFLNS+
Sbjct: 333 EFATNEEAMAAMSKDKDRTNIQHRYIELFLNST 365
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + ED
Sbjct: 10 YVVKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHF-IYTREGRQSGEAFVELESEEDVKT 68
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 69 ALKKDRESMGHRYIEVF 85
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + S P V + GL F + +IV FFS +VP + + G+ +G+
Sbjct: 94 WVLKHSSPNSTDTANDSFVRLWGLSFGCTKGEIVQFFSGLEIVPNGITLPVDPEGKFTGK 153
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A + FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 AFLQFASQELAEKALRKHKEKIGHRYIEVFKSSQ 187
>gi|441626116|ref|XP_003265953.2| PREDICTED: G-rich sequence factor 1 [Nomascus leucogenys]
Length = 539
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VH+RGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 460 HFVHVRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 519
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 520 RSHVHHRYIELFLN-SCPKG 538
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 310 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 369
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 370 REEIGNRYIEIF 381
>gi|224052108|ref|XP_002190951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Taeniopygia guttata]
Length = 327
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+
Sbjct: 185 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 244
Query: 116 NIRHRYIELFLNSSS 130
+++HRYIELFLNS++
Sbjct: 245 HMQHRYIELFLNSTA 259
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WSGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|60302824|ref|NP_001012610.1| heterogeneous nuclear ribonucleoprotein H3 [Gallus gallus]
gi|60099043|emb|CAH65352.1| hypothetical protein RCJMB04_21b18 [Gallus gallus]
Length = 342
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 116 NIRHRYIELFLNSSS 130
+++HRYIELFLNS++
Sbjct: 260 HMQHRYIELFLNSTA 274
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WTGKHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|213514986|ref|NP_001135185.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
gi|209149642|gb|ACI32984.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
Length = 204
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
VHMRGLPFR E DI +FFSP+ PV V I++ NG+ +GEADV F +HEDA+ AMSKD+
Sbjct: 100 VHMRGLPFRATEGDIANFFSPLTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKDKN 159
Query: 116 NIRHRYIELFLNSSS 130
+++HRYIELFLNS++
Sbjct: 160 HMQHRYIELFLNSTA 174
>gi|449269002|gb|EMC79814.1| Heterogeneous nuclear ribonucleoprotein H3 [Columba livia]
Length = 343
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+
Sbjct: 201 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 260
Query: 116 NIRHRYIELFLNSSS 130
+++HRYIELFLNS++
Sbjct: 261 HMQHRYIELFLNSTA 275
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WTGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|224052106|ref|XP_002190890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Taeniopygia guttata]
Length = 342
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 116 NIRHRYIELFLNSSS 130
+++HRYIELFLNS++
Sbjct: 260 HMQHRYIELFLNSTA 274
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WSGKHNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|334327209|ref|XP_001378263.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Monodelphis domestica]
Length = 231
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
H VHMRGLP+RV E DI +FFSP PV +++I +GR +GE DV FATHEDA+ AMSK
Sbjct: 91 HCVHMRGLPYRVTENDIYNFFSPFNPVREHIEIG-PDGRVTGEVDVEFATHEDAVAAMSK 149
Query: 113 DRTNIRHRYIELFLNSSS 130
D+ N++HRY++LFLNS++
Sbjct: 150 DKANMQHRYVKLFLNSTA 167
>gi|432960846|ref|XP_004086494.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 370
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 33 PGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGR 91
P G P +SS H +HMRGLPF+ + +DIV FFSP V + I + +GR
Sbjct: 267 PAGRPASAPHRAVSPQSSEANSHFIHMRGLPFQASGEDIVKFFSPYVVSKIMIECRPDGR 326
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
SGEADVYF+ H DA+ AMS+DRTN+ HRYIELFLNS+
Sbjct: 327 TSGEADVYFSCHRDAVAAMSRDRTNMGHRYIELFLNSA 364
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF + DI+ FFS + V I GR SGEA V F + E A +A+ K
Sbjct: 170 VVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQFTSQEVAGKALQK 229
Query: 113 DRTNIRHRYIELFLNSSS 130
R + HRY+E+F + SS
Sbjct: 230 HRELMGHRYVEVFPSRSS 247
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ +++ FFS V++ ++ + GRPSG A + ED +A
Sbjct: 73 IVQVRGLPWSCTVHELLHFFSDCRIRDGERGVHLTLD-RLGRPSGRAFIEMEHEEDVSKA 131
Query: 110 MSKDRTNIRHRYIEL 124
+ K R + RY+E+
Sbjct: 132 LEKHRQYLGPRYVEV 146
>gi|94536671|ref|NP_001035439.1| uncharacterized protein LOC678601 [Danio rerio]
gi|92096562|gb|AAI15345.1| Zgc:136953 [Danio rerio]
gi|190338538|gb|AAI63730.1| Zgc:136953 [Danio rerio]
Length = 209
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
Query: 45 WVNESSGPGH--HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFA 101
+ N+S+ H H VHMRGLPFR E D+ FF P+ PV V I+ NG+ +GEADV F
Sbjct: 91 YSNDSNSGFHSGHFVHMRGLPFRATESDVAHFFGPLTPVRVHIDMGPNGKSTGEADVEFR 150
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+HEDA+ AMSKD+ +++HRYIELFLNS+S
Sbjct: 151 SHEDAVSAMSKDKNHMQHRYIELFLNSTS 179
>gi|198417021|ref|XP_002122500.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H2
(hnRNP H2) (Heterogeneous nuclear ribonucleoprotein H)
(hnRNP H) (FTP-3) [Ciona intestinalis]
Length = 420
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYF 100
G+ + E + P V MRGLPF+ E+D+ +FFSP+VPV V+I Y +GR +GE V+F
Sbjct: 304 GEEFYEEEASPSQFVVRMRGLPFKCQEQDVFNFFSPLVPVRVNIEYSDDGRVTGEGTVFF 363
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A+++DA AM K++ I+HRYIELFL S
Sbjct: 364 ASYQDAQAAMQKNKECIQHRYIELFLRS 391
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHED 105
SS V +RGLPF+ +++++ FFS +VP + + NGR +GEA V F + E
Sbjct: 100 SSAQADVFVRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRSTGEAYVEFGSPES 159
Query: 106 AMQAMSKDRTNIRHRYIELFLNSS 129
A +A++K + I HRYIE+F +S
Sbjct: 160 AEKALTKHKEKIGHRYIEIFKSSK 183
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP--------VYVDINYKNGRPSGEADVYFATHEDA 106
+ V +RGLP+ E +++ F + V Y D + RPSGEA V + +
Sbjct: 6 YVVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTD----DQRPSGEAFVEVTSQKSL 61
Query: 107 MQAMSKDRTNIRHRYIELFLNS 128
KD I RYIE+F +S
Sbjct: 62 QTCFEKDHQLIGKRYIEVFESS 83
>gi|449685013|ref|XP_002164898.2| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 365
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H+VHMRGLPF + DIV FFSP+ PV V + ++ NGRP GE DV FATH DA AM KD
Sbjct: 196 HSVHMRGLPFEASVSDIVTFFSPLNPVDVRLMFEPNGRPKGECDVDFATHSDAESAMLKD 255
Query: 114 RTNIRHRYIELFLNSS 129
+ N+ HRYIELFL SS
Sbjct: 256 KQNMGHRYIELFLKSS 271
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF + DI +FFS + P + I ++GR SG+A V F T +DA A+ K
Sbjct: 31 IVRLRGLPFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLK 90
Query: 113 DRTNIRHRYIELFLNS 128
+ I HRYIE+F +S
Sbjct: 91 HKEKIGHRYIEIFQSS 106
>gi|351707744|gb|EHB10663.1| G-rich sequence factor 1 [Heterocephalus glaber]
Length = 455
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVD---FFSPVVP 80
F N++ + P P + + P H VHMRGLPF+ N +DI++ FF P+ P
Sbjct: 344 FENEKEIELPKEVLEKVP--EAADLGAMPSLHVVHMRGLPFQANAQDIINVCAFFMPLRP 401
Query: 81 VYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
V + + Y + G+ +GEA V+F +HEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 402 VRITMEYSSSGKATGEAHVHFGSHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 454
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 32/102 (31%)
Query: 56 TVHMRGLPFRVNEKDIVDFF-------------SP-----VVPVY----------VDI-- 85
V +RGLP+ +EKDIVDFF SP +V +Y VDI
Sbjct: 193 VVRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITF 252
Query: 86 --NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+Y+ R +GEA V F E A QA+ K R I +RYIE+F
Sbjct: 253 VMDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIF 294
>gi|444727895|gb|ELW68371.1| Heterogeneous nuclear ribonucleoprotein H2 [Tupaia chinensis]
Length = 236
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FF + P+ V I +GR +
Sbjct: 69 GMSDHRHGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFLLLNPMRVHIEIGPDGRVT 127
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
GEADV F THEDA+ AM+KD+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 128 GEADVEFDTHEDAVAAMAKDKVNMQHRYVELFLNSTAGTSG-GAYDHSYVELYLNSTA 184
>gi|395530818|ref|XP_003767484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Sarcophilus harrisii]
Length = 344
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
HH VHMRGLP++ DI FFSP+ P+ V I ++G+ +GEADV F THEDA+ AM+K
Sbjct: 188 HHWVHMRGLPYKATVNDIYHFFSPLCPLRVHIEIGQDGKATGEADVDFVTHEDAVAAMAK 247
Query: 113 DRTNIRHRYIELFLNSSSPRGGV 135
++T ++HRYIELFL S++ RGG+
Sbjct: 248 EKTYMQHRYIELFLYSTA-RGGM 269
>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 518
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMSKD 113
+ VHMRGLPF+ NE DI FF P+ PV + I + N RPSGEA+V F EDAM+AMSKD
Sbjct: 345 YVVHMRGLPFKANEDDIATFFEPLEPVDIRILFNNNNRPSGEANVEFGNKEDAMRAMSKD 404
Query: 114 RTNIRHRYIELFLN 127
+T ++HRYIELF++
Sbjct: 405 KTYMQHRYIELFMD 418
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 36 FAGPRPGDRWVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + +G + V +RGLPF + DIV FF + P + I
Sbjct: 133 FRSKRSEMEWVIKKTGSTLDSVLDDNCVRLRGLPFGSTKDDIVQFFQGLEMTPDGITIAT 192
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F E+A +A+ K + I HRYIE+F +S
Sbjct: 193 DFTGRSTGEAFVQFVDRENAEKALQKHKEKIGHRYIEIFRSS 234
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD--------INYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ DI+ F S + V + GRPSGEA V + ED
Sbjct: 56 VVKMRGLPWSATADDIIKFLSILGEAKVKDGAAGVHLTMAREGRPSGEAYVEMESEEDLK 115
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
A+ KDR ++ +RYIE+F + S
Sbjct: 116 AALKKDREHMGNRYIEVFRSKRS 138
>gi|403301377|ref|XP_003941367.1| PREDICTED: G-rich sequence factor 1-like [Saimiri boliviensis
boliviensis]
Length = 291
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV 81
F +++ + P P V+ + P + VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 174 AAFESEKEIELPQEM--PEKLPEAVDFGTTPCLYFVHMRGLPFQANAQDIINFFAPLKPV 231
Query: 82 YVDINYKNGRPS-GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSG 139
+ + Y + R + GEA+V+F HEDA+ M KD +++ HRYIELFL SS P+G + G
Sbjct: 232 RITMEYSSSRKATGEAEVHFEIHEDAVAVMLKDWSHVHHRYIELFL-SSCPKGKLDFRG 289
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 60 RGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
RGLP+ N+KDIVDFF+ + V + ++Y+ + +GEA V F E A QA+ K R I
Sbjct: 59 RGLPYSCNKKDIVDFFAGLNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHREEI 118
Query: 118 RHRYIELF 125
+RYIE+F
Sbjct: 119 GNRYIEIF 126
>gi|410923501|ref|XP_003975220.1| PREDICTED: G-rich sequence factor 1-like [Takifugu rubripes]
Length = 380
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H +HMRGLPF+V+ +D+V+FF P+V + + + +GRPSGEADVYF HEDA+ AMS+D
Sbjct: 302 HYIHMRGLPFQVSGEDVVNFFRPLVVSKMLMEFGPDGRPSGEADVYFGRHEDAVAAMSRD 361
Query: 114 RTNIRHRYIELFLNS 128
R +I RYIELFLNS
Sbjct: 362 REHIGGRYIELFLNS 376
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV---YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF + DI FFS + V I GR SGEA V F + E+A +A+ +
Sbjct: 187 VVRLRGLPFSSTKADIAQFFSDLDIVENGITIITDHAGRNSGEAFVQFFSKEEAEKALLR 246
Query: 113 DRTNIRHRYIELF 125
DR + RYIE+F
Sbjct: 247 DRAVMGTRYIEVF 259
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRP 92
P P + E V ++GL + +D++ FFS V ++ +N K GRP
Sbjct: 73 PLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVKGIHFTLN-KMGRP 131
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G A + ED +A+ K R + RY+E++
Sbjct: 132 TGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVY 164
>gi|348513989|ref|XP_003444523.1| PREDICTED: G-rich sequence factor 1-like [Oreochromis niloticus]
Length = 400
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVY 99
P + S+ P H+ +H+RGLPF+ + +DIV FF P+ + I +GRPSGEADVY
Sbjct: 306 PPSLHLQSSTVPLHY-IHVRGLPFQASGEDIVKFFYPLAVSKILIECGPDGRPSGEADVY 364
Query: 100 FATHEDAMQAMSKDRTNIRHRYIELFLNS 128
F H DA+ AMSKDR NI RYIELFLNS
Sbjct: 365 FHCHRDAVAAMSKDRMNIGERYIELFLNS 393
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF E DIV FFS + I GR SG A V F + E A +A+ +
Sbjct: 192 VVLLRGLPFTCTEDDIVHFFSGLEITENGITMVTDSRGRKSGVAYVQFTSQEAADEALQR 251
Query: 113 DRTNIRHRYIELF 125
DR I +RYIE+F
Sbjct: 252 DREIIGNRYIEVF 264
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V ++GLP+ +D++ FFS V +++ ++ + GRPSG A + ED +
Sbjct: 94 YIVQVKGLPWSCTTQDLLQFFSECRIRDGVKGIHLTLD-RLGRPSGRAFIEMEHEEDVSK 152
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 153 ALEKHRQYLGPRYVEVY 169
>gi|213513203|ref|NP_001135339.1| G-rich sequence factor 1 [Salmo salar]
gi|209734348|gb|ACI68043.1| G-rich sequence factor 1 [Salmo salar]
Length = 400
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
H VHMRGLPF+ DIV FFSP+ + + + +GR SGEADVYF +H+DA+ AM++
Sbjct: 318 QHFVHMRGLPFQATGDDIVQFFSPLALSRILVEFGPDGRASGEADVYFTSHQDAVSAMTR 377
Query: 113 DRTNIRHRYIELFLNSSS 130
D+ +++ RYIELFLNS+S
Sbjct: 378 DKAHMQERYIELFLNSTS 395
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ E D++ FFS + V + +Y+ GR SGEA V F T E A +A++
Sbjct: 199 VVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDYR-GRNSGEAYVQFLTQEQADEALT 257
Query: 112 KDRTNIRHRYIELFLNSSSPRGG 134
+DR I +RYIE+F + S GG
Sbjct: 258 RDRQVIGNRYIEVFPSRRSEIGG 280
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP------ 77
F D + P + P P + V + +GLP+ +D++ FFS
Sbjct: 78 FKEDDYPPLPDYNSDPGPEKKEV--------FIIRAKGLPWSCTTEDLLQFFSECRVRDG 129
Query: 78 VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V +++ +N ++G+P+G+A + +D +A+ K R + RYIE+F
Sbjct: 130 VKGIHLTVN-RDGKPNGQAFIELEHEDDVGKALEKHRQYLGPRYIEVF 176
>gi|334321772|ref|XP_001372905.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 362
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
HH VHMRGLP++ DI FFSP+ P+ V I ++G+ +GEADV F THEDA+ AM K
Sbjct: 210 HHWVHMRGLPYKATVNDIYHFFSPLCPLRVHIEIGEDGKATGEADVDFVTHEDAVAAMVK 269
Query: 113 DRTNIRHRYIELFLNSSS 130
++T ++HRYIELFL S++
Sbjct: 270 EKTYMQHRYIELFLYSTA 287
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ +RGLPF N++ I FFS + VP + + ++++ G+ +G A V FA+ E A A+ K
Sbjct: 43 LCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQ-GKSTGTALVQFASQEAAEIAIRK 101
Query: 113 DRTNIRHRYIELFLNSSSP 131
+ RY+E N S P
Sbjct: 102 HKGRPEPRYLENLKNGSVP 120
>gi|291389582|ref|XP_002711385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Oryctolagus
cuniculus]
Length = 415
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H V MRGLP++ E I +FFSP+ PV V I + R +GEADV FATHE A+ AMSKD
Sbjct: 289 HCVRMRGLPYKATENHIYNFFSPLNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HR IELFLNS++
Sbjct: 349 RANMQHRCIELFLNSTT 365
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 11/95 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + SGP V +RGLPF +++IV FFS +VP + + ++ ++ + +G
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDSED-KITG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
EA V FA+ E A +A+ K + I HR IE+F +S
Sbjct: 154 EAFVQFASQEVAEKALGKHKERIGHRSIEVFKSSQ 188
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRP 92
GP+ G+ +V V +RGLP+ + +D+ +F S V Y + GR
Sbjct: 4 GPQGGEGFV----------VKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHFIYAREGRQ 53
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
SGEA V + +D A+ KDR + H YI++F
Sbjct: 54 SGEAFVELESEDDVKMALKKDRESTGHPYIKVF 86
>gi|156375031|ref|XP_001629886.1| predicted protein [Nematostella vectensis]
gi|156216896|gb|EDO37823.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
HTV MRGLPF E D+ FF P+ PV V + + +GR GE +V FATH DA AMSKD
Sbjct: 247 HTVAMRGLPFGAKETDVKQFFMPLNPVEVRLRWGPDGRCCGEGEVDFATHADATAAMSKD 306
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
R + HRYIELFLN SSP G GG
Sbjct: 307 RQTMGHRYIELFLN-SSPDGSQGG 329
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 44 RWVNESSGP-----GHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGE 95
WV + GP V +RGLP+ ++++I FF+ +VP + I + G+ +GE
Sbjct: 89 EWVIKRMGPPSDRDQEAVVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGE 148
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A QAM K + I HRYIE+F +S S
Sbjct: 149 GFVEFASPEIAGQAMQKHKEKIGHRYIEIFKSSKS 183
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS-------PVVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
V RGLP+ +DI +FF P V+ +GRPSGE V F + +D +
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGI-DGRPSGECFVQFVSEKDVEK 64
Query: 109 AMSKDRTNIRHRYIELF 125
A+ + ++ RYIE+F
Sbjct: 65 ALEMNNEHMGKRYIEVF 81
>gi|395741721|ref|XP_003780739.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H3 [Pongo abelii]
Length = 346
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
G H VHMRGLPFR E DI +FFSP+ V++DI +GR +GEADV F THEDA+ AM
Sbjct: 201 GGHFVHMRGLPFRATENDIANFFSPLNQYEVHIDIG-ADGRATGEADVEFVTHEDAVAAM 259
Query: 111 -SKDRTNIRHRYIELFLNSS 129
+ + N++HRYIELFLNS+
Sbjct: 260 FXRIKINMQHRYIELFLNST 279
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 8/97 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGG 134
V FA+ E A A+ K + I HRYIE+F +S S G
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRSEIKG 98
>gi|196010820|ref|XP_002115274.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
gi|190582045|gb|EDV22119.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
Length = 339
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%), Gaps = 8/112 (7%)
Query: 26 NDRWNDRPG---GFAGPRPGDRWVNESSGPGH----HTVHMRGLPFRVNEKDIVDFFSPV 78
DR+N G G+ RP D V P H++ MRGLPF+V E +IVDFF +
Sbjct: 223 EDRYNQGRGYNRGYLDNRPSDHPVEPDRPPDFEPNVHSIRMRGLPFKVTENEIVDFFDQI 282
Query: 79 VPVYVDINYKNG-RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
+ I Y +G + +GEA V F +EDA++AM+KDR I+HRYIELFLN++
Sbjct: 283 PLQNIHIEYGDGGKATGEAVVEFYNYEDALEAMNKDRRRIKHRYIELFLNTT 334
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYF 100
R S + V +RGLP+ ++++I FF+ ++P + ++GR +GEA V F
Sbjct: 95 RTKQRSGRDSENVVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEF 154
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A + + +A+SKD+ I HRYIE+F S
Sbjct: 155 ANTDVSERALSKDKETIGHRYIEIFRAKKS 184
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +D+ FF+ V I++ +GR SGEA + F + ED +A+
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 111 SKDRTNIRHRYIELFLNSSS 130
++R ++ RY+E+F + S
Sbjct: 68 ERNRCHMGKRYVEVFKSKRS 87
>gi|340380887|ref|XP_003388953.1| PREDICTED: RNA-binding protein 12B-like [Amphimedon queenslandica]
Length = 746
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 49 SSGP-GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDA 106
SS P G H V MRGLP+ +E++I DFFSP+VP V + GR SGE +V F THEDA
Sbjct: 577 SSDPNGGHCVRMRGLPYSASEREIFDFFSPLVPFRVTLEKDTYGRASGEGEVEFCTHEDA 636
Query: 107 MQAMSKDRTNIRHRYIELFLNSS 129
+ AM KDR +I RY+ELFL+SS
Sbjct: 637 VNAMKKDRGHIGSRYVELFLHSS 659
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 49 SSGP-GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDA 106
SS P G H V MRGLP+ +E++I DFFSP+VP V + GR SGE +V F THEDA
Sbjct: 390 SSDPNGGHCVRMRGLPYSASEREIFDFFSPLVPFRVTLEKDTYGRASGEGEVEFCTHEDA 449
Query: 107 MQAMSKDRTNI 117
+ AM KDR +I
Sbjct: 450 VNAMKKDRGHI 460
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ E +I DFF + ++ + ++GR +GEA V ED +A+ + + +
Sbjct: 238 LRGLPYGSTEDNIRDFFQGIAISHITMQLNESGRETGEAFVELFHEEDVDRALDRHKKVL 297
Query: 118 RHRYIELFLNSSS 130
HRYIE+F + S
Sbjct: 298 GHRYIEVFRTTRS 310
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ DI+DF V V+ +GR SGEA V + D +A+
Sbjct: 136 VRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFG-SDGRVSGEAYVEVCSGGDVERAL 194
Query: 111 SKDRTNIRHRYIELFLNSS 129
DR ++ RYIE+F S
Sbjct: 195 RHDRDHLGGRYIEVFRASQ 213
>gi|391341907|ref|XP_003745268.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Metaseiulus occidentalis]
Length = 503
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPS 93
G+ G R G SG GH VHMRG+P++ + D+ DFF+P+ PV V Y+ GRPS
Sbjct: 249 GYGGRRAGKSSGASYSGQGHF-VHMRGIPYKATDSDVYDFFAPLRPVSVQFIYEAGGRPS 307
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
GE DV F++H DA AM+K+ ++ RY+ELFL S+
Sbjct: 308 GECDVEFSSHRDAQDAMAKNNAHMGTRYVELFLKSN 343
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 51 GP-GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
GP G H VHMRGLP++ E D+ FF P+ P V + GRPSGE DV FA+H DA +
Sbjct: 397 GPSGGHFVHMRGLPYKACEDDVFQFFDPIRPASVRFTFDATGRPSGECDVEFASHRDAAE 456
Query: 109 AMSKDRTNIRHRYIELFLNSSSPRGGVG 136
AM ++ ++ +RY+ELF+ SS+ G
Sbjct: 457 AMERNNAHMGNRYVELFMKSSAQNKAFG 484
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RG+PF ++++I +FFS +VP + + +++ NGR +G+A V FA+ E A +A+
Sbjct: 107 IVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDF-NGRTAGDAYVQFASKEAAEKALE 165
Query: 112 KDRTNIRHRYIELF 125
K + I HRYIE+F
Sbjct: 166 KHKERIGHRYIEIF 179
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-----VDINY-KNGRPSGEADVYFAT 102
S G V +RG+P+ D+++F V V + Y ++GR SGEA V +
Sbjct: 2 SDGEADTIVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYTRDGRASGEAYVELES 61
Query: 103 HEDAMQAMSKDRTNIRHRYIELF 125
D A+ KD N+ +RYIE+F
Sbjct: 62 EPDVENALKKDNENMGNRYIEVF 84
>gi|326923399|ref|XP_003207924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Meleagris gallopavo]
Length = 323
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 63 PFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY 121
PFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+ +++HRY
Sbjct: 187 PFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQHRY 246
Query: 122 IELFLNSSS 130
IELFLNS++
Sbjct: 247 IELFLNSTA 255
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WSGKHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
A V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIFKSSKS 96
>gi|313244027|emb|CBY14897.1| unnamed protein product [Oikopleura dioica]
Length = 376
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
+ +G H VHMRGLP+R E++I +FF PV + V I + + RP+GEADV F TH DA
Sbjct: 260 DENGQYKHIVHMRGLPYRATEQEISEFFLPVNTLAVRIIFNRENRPAGEADVAFYTHADA 319
Query: 107 MQAMSKDRTNIRHRYIELFLNSS 129
++SKDR N+ RY+ELFL S+
Sbjct: 320 QASLSKDRQNLGSRYVELFLRST 342
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V MRG+PF + DI DFF + P + I +NG +GEA V F E A QA+ +
Sbjct: 118 IVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQALER 177
Query: 113 DRTNIRHRYIELFLNSS 129
+ N+ RYIE+F +SS
Sbjct: 178 HKKNMGQRYIEVFKSSS 194
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ +++I +F P + ++GRPSGEA V + A SK
Sbjct: 19 AVRLRGLPWSATKQEICEFLENRPDESSVIICLGRDGRPSGEALVGLYDSDSFELAKSKH 78
Query: 114 RTNIRHRYIELFLNSSS 130
+ N+ RY+E++ +S++
Sbjct: 79 KENLGRRYVEVYESSTA 95
>gi|402869627|ref|XP_003898853.1| PREDICTED: G-rich sequence factor 1 [Papio anubis]
Length = 606
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 17/105 (16%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y +G+ +GEADV+F THEDA+ AM KD
Sbjct: 502 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 561
Query: 114 RTNIRHR------YIELFLNSSSPRGGVGGSGFSRSELWAVHTSE 152
R+++ HR ++ +FL G G S S L A E
Sbjct: 562 RSHVHHRVKQEAFHLHIFL----------GRGISSSGLLAATARE 596
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 353 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 412
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 413 EEIGNRYIEIF 423
>gi|260834915|ref|XP_002612455.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
gi|229297832|gb|EEN68464.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
Length = 411
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 22/98 (22%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ +DI FF P+VP+ V I+Y + R +GEADV FA+H+DA+ AM+KD
Sbjct: 278 HFVHMRGLPFKAASEDIEQFFQPLVPMKVQIHYGPDKRATGEADVEFASHDDAVAAMAKD 337
Query: 114 RTNIR---------------------HRYIELFLNSSS 130
+ N+R HRYIELFL+S +
Sbjct: 338 KANMRKWKCLSCDNHSGINGLFSFPEHRYIELFLDSEA 375
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + SG V +RGLPF ++++I FFS +VP + + +Y+ GR +GEA
Sbjct: 88 WVVKHSGQDQVNDGIVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQ-GRSTGEAF 146
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
V F + + A +A+ K + I HRYIE+F +S
Sbjct: 147 VQFTSQDIAEKALGKHKEKIGHRYIEIFKSS 177
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-SPVVPVY-----VDINY-KNGRPSGEADVYFATHEDAM 107
+ V MRGLP+ +++ +F S V + + K GRPSGEA V T ED
Sbjct: 2 YVVRMRGLPWSATCEEVKNFLTSEGCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSEDFE 61
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A++K ++ HRYIE+F + S
Sbjct: 62 KALAKHNQHMGHRYIEVFRSKVS 84
>gi|344244475|gb|EGW00579.1| G-rich sequence factor 1 [Cricetulus griseus]
Length = 621
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ S P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 418 FESDKEIELPKEMSEKLP--ETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 475
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIR 118
+ Y +G+ +GEADV+F THEDA+ AM KDR+++R
Sbjct: 476 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVR 511
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 297 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 356
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 357 REEIGNRYIEIF 368
>gi|157111781|ref|XP_001651725.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878303|gb|EAT42528.1| AAEL005947-PB [Aedes aegypti]
Length = 491
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
VH+RG+PF +E+DI DFF P+ PV ++++ + GRPSGE D YF T E+AM+AM K +
Sbjct: 409 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 468
Query: 115 TNIRHRYIELFLNSSSPR 132
+ RYIELF S P+
Sbjct: 469 EKMGSRYIELFAGSRRPQ 486
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 43 DRWVN--ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--------VPVYVDINYKNGRP 92
D+ VN ES+ G + MRGLP+ +D+ FFS + + + +D + GR
Sbjct: 102 DKAVNREESAEDGGPVLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLD---QLGRA 158
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
SGEA V FAT +A QAMSK + I +RYIELF +S+
Sbjct: 159 SGEAIVEFATDAEADQAMSKQKEKIGNRYIELFRSST 195
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ +RGLP+ + E DI DF S + V++ IN R +GEA + T ED ++A+ +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 115 TNIRHRYIELFLNS 128
+ HRYIE+F S
Sbjct: 84 ATLGHRYIEVFTAS 97
>gi|157111783|ref|XP_001651726.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878304|gb|EAT42529.1| AAEL005947-PA [Aedes aegypti]
Length = 471
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
VH+RG+PF +E+DI DFF P+ PV ++++ + GRPSGE D YF T E+AM+AM K +
Sbjct: 389 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 448
Query: 115 TNIRHRYIELFLNSSSPR 132
+ RYIELF S P+
Sbjct: 449 EKMGSRYIELFAGSRRPQ 466
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 13/97 (13%)
Query: 43 DRWVN--ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--------VPVYVDINYKNGRP 92
D+ VN ES+ G + MRGLP+ +D+ FFS + + + +D + GR
Sbjct: 102 DKAVNREESAEDGGPVLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLD---QLGRA 158
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
SGEA V FAT +A QAMSK + I +RYIELF +S+
Sbjct: 159 SGEAIVEFATDAEADQAMSKQKEKIGNRYIELFRSST 195
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ +RGLP+ + E DI DF S + V++ IN R +GEA + T ED ++A+ +++
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 115 TNIRHRYIELFLNS 128
+ HRYIE+F S
Sbjct: 84 ATLGHRYIEVFTAS 97
>gi|256090133|ref|XP_002581068.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232934|emb|CCD80289.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 386
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 20/151 (13%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP---------GD 43
YDA + +G NR +G F + +N P GF GP P G
Sbjct: 226 YDAPPFSPNGSGPNRGPVPGRYAPYGRPPHVFGHPGYNSPPRGFEGPSPSKGSNFGPPGH 285
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFAT 102
++ H+V MRGLP+ ++DI F SP+ PV + + + RP+GEA V FA+
Sbjct: 286 YEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFAS 345
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
H++A +AM KDR I RYIELFL +S+P+G
Sbjct: 346 HDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 102 HVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKE 161
Query: 112 KDRTNIRHRYIELF 125
K I HRYIE+F
Sbjct: 162 KHMEKIGHRYIEIF 175
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI+ FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQG-SNGRSNGEAFIELESKDDKQKA 62
Query: 110 MSKDRTNIRHRYIELFLNSS 129
M+ ++ RYIE+F + S
Sbjct: 63 MAHHNQHLGRRYIEVFDSCS 82
>gi|170035383|ref|XP_001845549.1| G-rich sequence factor-1 [Culex quinquefasciatus]
gi|167877365|gb|EDS40748.1| G-rich sequence factor-1 [Culex quinquefasciatus]
Length = 508
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
VH+RG+PF +++DI DFF P+ PV +I Y + GRPSGE + YF T E+AM+AM K +
Sbjct: 425 CVHLRGMPFSCDDQDIQDFFMPLRPVKANIEYDSRGRPSGEGNAYFETVEEAMKAMKKHK 484
Query: 115 TNIRHRYIELFLNSSSPRG 133
+ RYIELF + P+G
Sbjct: 485 EKMGSRYIELFAGARKPQG 503
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFA 101
+E GP + +RGLP+ ++DI FF + + + + + GR SGEA V FA
Sbjct: 106 DEDGGP---VLKLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFA 162
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSS 129
T DA QAM+K + I RYIELF +S+
Sbjct: 163 TEADAEQAMNKQKEKIGSRYIELFRSST 190
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ +RGLP+ + E+DI DF V V++ IN R +GEA + T +D ++A+ ++
Sbjct: 19 IRLRGLPWNITEQDIRDFLQGVQVEHVHIGINAMTKRQTGEAYLRLPTLDDQIKALDLNK 78
Query: 115 TNIRHRYIELF 125
I HRYIE+F
Sbjct: 79 ATIGHRYIEVF 89
>gi|353232935|emb|CCD80290.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 497
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 20/151 (13%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP---------GD 43
YDA + +G NR +G F + +N P GF GP P G
Sbjct: 226 YDAPPFSPNGSGPNRGPVPGRYAPYGRPPHVFGHPGYNSPPRGFEGPSPSKGSNFGPPGH 285
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFAT 102
++ H+V MRGLP+ ++DI F SP+ PV + + + RP+GEA V FA+
Sbjct: 286 YEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFAS 345
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
H++A +AM KDR I RYIELFL +S+P+G
Sbjct: 346 HDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 102 HVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKE 161
Query: 112 KDRTNIRHRYIELF 125
K I HRYIE+F
Sbjct: 162 KHMEKIGHRYIEIF 175
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI+ FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQG-SNGRSNGEAFIELESKDDKQKA 62
Query: 110 MSKDRTNIRHRYIELFLNSS 129
M+ ++ RYIE+F + S
Sbjct: 63 MAHHNQHLGRRYIEVFDSCS 82
>gi|256090131|ref|XP_002581067.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 472
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 20/151 (13%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP---------GD 43
YDA + +G NR +G F + +N P GF GP P G
Sbjct: 226 YDAPPFSPNGSGPNRGPVPGRYAPYGRPPHVFGHPGYNSPPRGFEGPSPSKGSNFGPPGH 285
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFAT 102
++ H+V MRGLP+ ++DI F SP+ PV + + + RP+GEA V FA+
Sbjct: 286 YEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRFNAANRPTGEAIVDFAS 345
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
H++A +AM KDR I RYIELFL +S+P+G
Sbjct: 346 HDEAKEAMKKDREKIGPRYIELFL-ASTPKG 375
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 102 HVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKE 161
Query: 112 KDRTNIRHRYIELF 125
K I HRYIE+F
Sbjct: 162 KHMEKIGHRYIEIF 175
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI+ FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQG-SNGRSNGEAFIELESKDDKQKA 62
Query: 110 MSKDRTNIRHRYIELFLNSS 129
M+ ++ RYIE+F + S
Sbjct: 63 MAHHNQHLGRRYIEVFDSCS 82
>gi|301632397|ref|XP_002945272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Xenopus (Silurana) tropicalis]
Length = 218
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV FATHEDA+ AMSKD
Sbjct: 155 HFVHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKD 214
Query: 114 RTNI 117
+ N+
Sbjct: 215 KNNM 218
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 78 VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+VP + + ++Y+ GR +GEA V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 3 IVPNGITLTVDYQ-GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRS 56
>gi|328909179|gb|AEB61257.1| heterogeneous nuclear ribonucleoprotein F-like protein, partial
[Equus caballus]
Length = 113
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 68 EKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL 126
E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKDR N++HRYIELFL
Sbjct: 1 ENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 60
Query: 127 NSSS 130
NS++
Sbjct: 61 NSTT 64
>gi|332819574|ref|XP_526590.3| PREDICTED: G-rich sequence factor 1 [Pan troglodytes]
Length = 547
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y +G+ +GEADV+F THEDA+ AM KD
Sbjct: 483 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 542
Query: 114 RTNIR 118
R+++R
Sbjct: 543 RSHVR 547
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 333 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 392
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 393 REEIGNRYIEIF 404
>gi|7739449|gb|AAF68852.1|AF132364_1 hnRNP 2H9E [Homo sapiens]
gi|7739439|gb|AAF68846.1| hnRNP 2H9E [Homo sapiens]
Length = 139
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 56 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 115
Query: 112 KDRTNIR 118
KD+ N+R
Sbjct: 116 KDKNNMR 122
>gi|47218706|emb|CAG05678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 488
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 51 GPGHHT---VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDA 106
GPG H+ VHMRGLPFR E DI FFSP+ P+ V I++ NG+ +GEADV F +HEDA
Sbjct: 353 GPGFHSGHFVHMRGLPFRATENDIAKFFSPLNPLRVHIDFAPNGKSTGEADVEFRSHEDA 412
Query: 107 MQAMSKDRTNIR 118
+ AMSKD+ ++R
Sbjct: 413 VAAMSKDKNHMR 424
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 33/125 (26%)
Query: 45 WVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFSPVVPVYVD-------------- 84
WV + SGP + T+ +RGLPF ++++IV FFS +P V
Sbjct: 3 WVLKRSGPADYDSCSGCTLRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNG 62
Query: 85 ----INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS--------PR 132
++Y+ GR +GEA V FA+ E A +A+ K + I HRYIE+F +S + PR
Sbjct: 63 ITLPVDYQ-GRSTGEAFVQFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYELPR 121
Query: 133 GGVGG 137
G+GG
Sbjct: 122 RGMGG 126
>gi|7739447|gb|AAF68851.1|AF132363_2 hnRNP 2H9D [Homo sapiens]
gi|7739438|gb|AAF68845.1| hnRNP 2H9D [Homo sapiens]
gi|119574674|gb|EAW54289.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_f
[Homo sapiens]
Length = 145
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 62 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 121
Query: 112 KDRTNIR 118
KD+ N+R
Sbjct: 122 KDKNNMR 128
>gi|347968776|ref|XP_312018.5| AGAP002892-PA [Anopheles gambiae str. PEST]
gi|333467847|gb|EAA08189.6| AGAP002892-PA [Anopheles gambiae str. PEST]
Length = 589
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDA 106
S P + VHMRG+PF +E+D+ DFF P+ PV V +N + RPSGE D YF T E+A
Sbjct: 475 SDEPNLYCVHMRGMPFSCDEQDMYDFFMPLRPVKCVVQMNSRK-RPSGEGDAYFETKEEA 533
Query: 107 MQAMSKDRTNIRHRYIELF 125
++AM KD+ + RYIELF
Sbjct: 534 IKAMRKDKEKMGSRYIELF 552
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 31 DRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY--K 88
D+ G GP P E G H V +RGLP+ + E +I F V ++V I + +
Sbjct: 36 DQNQGGGGPVP------EDDGNQPHYVRLRGLPWSITEDEIRSFLHGVNILHVHICFHPQ 89
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
R +GEA + T D +A S+++ I HRYIE F
Sbjct: 90 TKRQTGEAYIRVPTQADRNKAFSRNKQTIGHRYIEFF 126
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--------VPVYVDINYKNGRPSGEADVY 99
ES GP V MRGLP+ + D+ FF + + + +D GR SGEA V
Sbjct: 144 ESGGP---VVKMRGLPWTSTKDDVKAFFQGLTIKNGYNGILLLLD---NLGRASGEAIVE 197
Query: 100 FATHEDAMQAMSKDRTNIRHRYIELF 125
FAT DA AM K + I +RYIELF
Sbjct: 198 FATEADAETAMGKHKEKIGNRYIELF 223
>gi|410041428|ref|XP_003950996.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pan troglodytes]
Length = 442
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRP 92
G + R GD + S GH VH RGLP+R K+ +F+SP+ + V+++I + + R
Sbjct: 267 GMSDHRYGDSGSSFQSTTGH-CVHTRGLPYRAT-KNXYNFYSPLNLMRVHIEIGHDD-RV 323
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
+G ADV FA HEDA+ AM+KD+ N++HRY+E+FLN+ G GG+
Sbjct: 324 TGRADVEFAAHEDAVAAMAKDKANMQHRYMEIFLNAVGTTGASGGA 369
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF +++IV FFS +VP + + ++++ GR +GEA V A+ E A A+ K
Sbjct: 110 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQ-GRSTGEAFVQLASQEIAEMALKK 168
Query: 113 DRTNIRHRYIELFLNSSS 130
R I HRYIE+F NS +
Sbjct: 169 HRERIGHRYIEIFXNSQA 186
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 56 TVHMRGLPFRVNEKDIVDF--------FSPVVPVYVDINYKNGRPSGEADVYFATHEDAM 107
V ++GL + + +++ F S + +Y GRPSGEA V + ++A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGICFIYTG----EGRPSGEAFVELESADEAK 66
Query: 108 QAMSKDRTNIRHRYIELFLNSS 129
A KDR + HRY+E+F ++S
Sbjct: 67 LA-XKDRETMGHRYVEVFKSNS 87
>gi|431900090|gb|ELK08023.1| G-rich sequence factor 1 [Pteropus alecto]
Length = 380
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY 82
F +++ + P + P V+ + H VHMRGLPF+ N +DI++FF+P+ PV
Sbjct: 266 AFESEKEIELPKEMSEKLP--EAVDFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVR 323
Query: 83 VDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIR 118
+ + Y +G+ +GEADV+F THEDA+ AM KDR+++R
Sbjct: 324 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVR 360
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++++ R +GEA V F E A QA+ K
Sbjct: 146 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDFRGRRKTGEAYVQFEEPEMANQALLKH 205
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 206 REEIGNRYIEIF 217
>gi|148700119|gb|EDL32066.1| mCG11326, isoform CRA_c [Mus musculus]
gi|149043913|gb|EDL97364.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 314
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHR 120
KD+ N+ ++
Sbjct: 253 KDKNNMHNQ 261
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|288806582|ref|NP_001165773.1| G-rich RNA sequence binding factor 1 [Xenopus (Silurana)
tropicalis]
gi|189442327|gb|AAI67701.1| Unknown (protein for MGC:186196) [Xenopus (Silurana) tropicalis]
Length = 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK 112
H +H+RGLPF + +DI +FF P++P+ + I Y G +GEA V F THEDA+ AM+K
Sbjct: 268 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHEDAVAAMAK 327
Query: 113 DRTNIRHRYIELFLNSS 129
+R + +H Y+EL+LNSS
Sbjct: 328 NRCHTQHGYLELYLNSS 344
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHED 105
+S P V +RGLP+ +E+DI+ FFS + I + + GR SGEA V F + E
Sbjct: 112 ASPPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A QA+ K + I RYIE+F
Sbjct: 172 ADQALLKHKQEIGSRYIEIF 191
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG------------RPSGEADVYFATH 103
V +RGLP+ D+++FF D N +NG +P G+A + F +
Sbjct: 3 IVRVRGLPWSCTADDVLNFFG-------DSNVRNGTEGVHFIFNRDGKPRGDAVIEFESA 55
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
ED +A+ + + + RY+E+F
Sbjct: 56 EDVQKAVEQHKKYMGQRYVEVF 77
>gi|395754533|ref|XP_003779794.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Pongo abelii]
Length = 440
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHM GLP+R E DI +FF V I +GR +GEA+V F T EDA+ AMSKD
Sbjct: 280 HCVHMCGLPYRATENDIYNFFXTAQSWRVHIVIGPDGRVTGEANVEFVTXEDAVAAMSKD 339
Query: 114 RTNIRHRYIELFLNSS-SPRGGVGGS 138
+ N HRY+ELFL+S+ +P GG GS
Sbjct: 340 KANTHHRYVELFLDSTIAPSGGGYGS 365
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 62 LPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
LPF ++++IV FFS +VP + + ++++ GR +GEA V +A+ E A + K + I
Sbjct: 113 LPFECSKEEIVQFFSWLEIVPNGITLMVDFQ-GRSTGEAFVQYASQEIAENVLEKHKERI 171
Query: 118 RHRYIELFLNS 128
RH YI++F +S
Sbjct: 172 RHMYIKIFKSS 182
>gi|355694925|gb|AER99832.1| heteroproteinous nuclear ribonucleoprotein H3 [Mustela putorius
furo]
Length = 108
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 44 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 103
Query: 112 KDRTN 116
KD+ N
Sbjct: 104 KDKNN 108
>gi|395737930|ref|XP_003777005.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pongo abelii]
Length = 596
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRP 92
G + R GD + S GH VH RGLP+R K+ +F+SP+ V V+++I + R
Sbjct: 255 GMSDHRXGDSGSSFQSTTGH-CVHTRGLPYRAT-KNXYNFYSPLNHVRVHIEIG-PDDRV 311
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
+G ADV FA H+DA+ AM+KD+ N++HRY+E+FLN++ G GG+
Sbjct: 312 TGRADVEFAAHKDAVVAMAKDKANMQHRYMEIFLNAAGTTGASGGA 357
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF +++IV FFS +VP + + ++++ GR +GEA V A+ E A A+ K
Sbjct: 99 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQ-GRSTGEAFVPLASQEIAETALKK 157
Query: 113 DRTNIRHRYIEL 124
R I HRYIE+
Sbjct: 158 HRERIGHRYIEI 169
>gi|449499514|ref|XP_002192774.2| PREDICTED: G-rich sequence factor 1 [Taeniopygia guttata]
Length = 402
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAM 107
+S P H VHMRG P + + +DI++FF+P+ P + + Y + G +GEADV+F +HEDA+
Sbjct: 314 TSSPPQHFVHMRGFPSQASAQDIINFFAPLRPTRILVEYNSGGDATGEADVHFESHEDAV 373
Query: 108 QAMSKDRTNIRHRYIELFLN 127
AM+KD + + IELFLN
Sbjct: 374 AAMAKDGSQMECSAIELFLN 393
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
+ES V +RGLPF E+DI DFFS + + Y+ R +GEA V FAT E A
Sbjct: 169 DESQAMSDGVVLLRGLPFTSTEEDIADFFSGLKITDIAFIYRGDRRTGEAFVQFATPEMA 228
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+A+ + R + RYIE++++
Sbjct: 229 AKALLRHREYMGSRYIEVYVS 249
>gi|350529357|ref|NP_001121205.2| G-rich RNA sequence binding factor 1 [Xenopus laevis]
Length = 440
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK 112
H +H+RGLPF + +DI +FF P++P+ + I Y G +GEA V F TH+DA+ AM+K
Sbjct: 360 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAK 419
Query: 113 DRTNIRHRYIELFLNSSS 130
+R + +H Y+EL+LNSS+
Sbjct: 420 NRCHSQHGYLELYLNSST 437
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHED 105
+S P V +RGLP+ +E+DI+ FFS + I + + GR SGEA V F + E
Sbjct: 204 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 263
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A QA+ K + I RYIE+F
Sbjct: 264 ADQALLKHKQEIGSRYIEIF 283
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG------------RPSGEADVYFATH 103
V +RGLP+ D+++FF D N +NG +P G+A + F +
Sbjct: 95 IVRVRGLPWSCTADDVLNFFD-------DSNVRNGTDGVHFIFNRDGKPRGDAVIEFESA 147
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
ED +A+ + + + RY+E+F
Sbjct: 148 EDVQKAVEQHKKYMGQRYVEVF 169
>gi|195037855|ref|XP_001990376.1| GH18272 [Drosophila grimshawi]
gi|193894572|gb|EDV93438.1| GH18272 [Drosophila grimshawi]
Length = 622
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 518 YYTIHMRGLPYNSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKR 577
Query: 113 DRTNIRHRYIELFLNSSSPRGGV 135
R + RYIELF + + RGGV
Sbjct: 578 HREQMGSRYIELFFDGKT-RGGV 599
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + ++ G GH V +RGLP+ V E+ I +FF+ + + D + +
Sbjct: 139 ATPKEAKEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRR 197
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 198 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 236
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ K+I+DF V + ++ + +G+ +GEA V A+ ED +A
Sbjct: 63 IRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVEVASQEDVEEAR 122
Query: 111 SKDRTNIRHRYIELFLNSSSPR 132
++ ++ HRYIE+F +++P+
Sbjct: 123 KLNKVSMGHRYIEVF--TATPK 142
>gi|169641981|gb|AAI60694.1| LOC100158276 protein [Xenopus laevis]
Length = 348
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK 112
H +H+RGLPF + +DI +FF P++P+ + I Y G +GEA V F TH+DA+ AM+K
Sbjct: 268 HDIHIRGLPFHASGQDIANFFHPIMPLKISIEYSADAGGATGEAVVRFLTHDDAVAAMAK 327
Query: 113 DRTNIRHRYIELFLNSSS 130
+R + +H Y+EL+LNSS+
Sbjct: 328 NRCHSQHGYLELYLNSST 345
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHED 105
+S P V +RGLP+ +E+DI+ FFS + I + + GR SGEA V F + E
Sbjct: 112 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A QA+ K + I RYIE+F
Sbjct: 172 ADQALLKHKQEIGSRYIEIF 191
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 19/82 (23%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG------------RPSGEADVYFATH 103
V +RGLP+ D+++FF D N +NG +P G+A + F +
Sbjct: 3 IVRVRGLPWSCTADDVLNFFD-------DSNVRNGTDGVHFIFNRDGKPRGDAVIEFESA 55
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
ED +A+ + + + RY+E+F
Sbjct: 56 EDVQKAVEQHKKYMGQRYVEVF 77
>gi|76155975|gb|AAX27224.2| SJCHGC06533 protein [Schistosoma japonicum]
Length = 249
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 80/155 (51%), Gaps = 27/155 (17%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP--GDRW----- 45
YD + +G NR +G F + ++ P GF GP P G R+
Sbjct: 5 YDGPPFSPNASGPNRVPVPGRFTPYGRPPHLFGHPGYSSPPRGFDGPSPLKGSRFWSPGY 64
Query: 46 ------VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADV 98
S+G H+V MRGLP+ ++DI F +P+ PV + + + RP+GEA V
Sbjct: 65 PEYDDHPQSSTG---HSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIV 121
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
FA+H++A +AM KDR I RYIELFL +S+P G
Sbjct: 122 DFASHDEAKEAMKKDREKIGSRYIELFL-ASTPNG 155
>gi|194744433|ref|XP_001954699.1| GF16612 [Drosophila ananassae]
gi|190627736|gb|EDV43260.1| GF16612 [Drosophila ananassae]
Length = 600
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
H+T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 485 HYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQMAMKR 544
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 545 HREQMGSRYIELFYDGKT 562
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G+ V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 130 ATPKEAKEAMRKISGHGNAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 188
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 189 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 227
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G + +RGLP+ K+I+DF V +++ + +G+ +GEA V +
Sbjct: 45 ENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVS 104
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
T ED +A ++ ++ HRYIE+F +++P+
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVF--TATPK 133
>gi|226487868|emb|CAX75599.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRPG---------- 42
YD + +G NR +G F + ++ P GF GP P
Sbjct: 48 YDGPPFSPNASGPNRVPVPGRFTPYGRPPQLFGHPGYSSPPRGFDGPSPLKGSSFWSPGY 107
Query: 43 ---DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADV 98
D S+G H+V MRGLP+ ++DI F +P+ PV + + + RP+GEA V
Sbjct: 108 PEYDDHPQSSTG---HSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIV 164
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
FA+H++A +AM KDR I RYIELFL +S+P G
Sbjct: 165 DFASHDEAKEAMKKDREKIGSRYIELFL-ASTPNG 198
>gi|226487878|emb|CAX75604.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP----------- 41
YD + +G NR +G F + ++ P GF GP P
Sbjct: 48 YDGPPFSPNASGPNRVPVPGRFTPYGRPPHLFGHPGYSSPPRGFDGPSPLKGSSFWSPGY 107
Query: 42 --GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADV 98
D S+G H+V MRGLP+ ++DI F +P+ PV + + + RP+GEA V
Sbjct: 108 PEYDDHPQSSTG---HSVRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIV 164
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
FA+H++A +AM KDR I RYIELFL +S+P G
Sbjct: 165 DFASHDEAKEAMKKDREKIGSRYIELFL-ASTPNG 198
>gi|358341226|dbj|GAA32134.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 404
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H+V +RGLPF DI F +P+ PV V I +GRP+GEA V FA+H++A +AM KD
Sbjct: 303 HSVRLRGLPFSATADDIDRFLAPLQPVNVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKD 362
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R I RYIELFL +S+P G
Sbjct: 363 REKIGSRYIELFL-ASTPMG 381
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
+ V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 101 YVVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSAEMLARAKE 160
Query: 112 KDRTNIRHRYIELFLNS 128
K I HRYIE+F +S
Sbjct: 161 KHMEKIGHRYIEIFESS 177
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK------------NGRPSGEADVYFATH 103
V +RGLP+ DI+DFF D+ K NGR +GEA + +
Sbjct: 3 VVRIRGLPYSARADDIIDFFK-------DVKIKNGKRGIFFPQGPNGRSNGEAFIELESK 55
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
++ +A + ++ RYIE+F
Sbjct: 56 QEIEKATAHHNEHMGRRYIEVF 77
>gi|193636729|ref|XP_001950119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 440
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMSKD 113
H VHM+GLP + N+ DI FF P+ PV + + N +P GEA+V F EDA+QAMSK+
Sbjct: 282 HVVHMKGLPLKANKNDIAKFFEPLKPVNIHFIFNNNNQPYGEANVEFGNIEDAVQAMSKN 341
Query: 114 RTNIRHRYIELFL 126
+T + HRYIELF+
Sbjct: 342 KTFMEHRYIELFM 354
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ V +RGLPF + +IV+FF + P + + IN K GR EA V F E+ +A+
Sbjct: 126 NCVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINSK-GRRMKEAFVQFVNRENLEKAL 184
Query: 111 SKDRTNIRHRYIELFLNS 128
K IR RYIE+F +S
Sbjct: 185 QKHMEKIRFRYIEVFRSS 202
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV---------VPVYVDINYKNGRPSGEADVYFATHEDA 106
V M GL DI+ F + + V+ +N K G+PS +A V + E
Sbjct: 24 VVKMHGLSLSTTADDIIKFLNTLGEAKVKDGASGVHFTMNRK-GKPSSQAYVEMESEESL 82
Query: 107 MQAMSKDRTNIRHRYIELF 125
A+ KDR + +RYI++F
Sbjct: 83 KAALKKDREYMGNRYIKVF 101
>gi|339245667|ref|XP_003374467.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972254|gb|EFV55937.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 370
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 10/91 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
+HMRGLP++ DI++FF P+ + V I + + RP+GEADV F DA++A+ KDR
Sbjct: 204 ALHMRGLPYKATANDIMEFFYPIKIMNVRILFDERNRPTGEADVEFQCESDALEALKKDR 263
Query: 115 TNIRHRYIELFLNSS---------SPRGGVG 136
+ RYIELF+N+ +PRGG G
Sbjct: 264 KTMGERYIELFINTGGGPIFGSYFTPRGGRG 294
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFF---SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
G H V +RGLP+ E+DI FF S ++ ++ + K GRPSGEA + F + +D +A
Sbjct: 6 GEHVVRVRGLPWSSKEEDIRKFFHDCSDIIGIHFTYS-KEGRPSGEAYLEFGSADDVDKA 64
Query: 110 M 110
+
Sbjct: 65 L 65
>gi|195445396|ref|XP_002070305.1| GK11105 [Drosophila willistoni]
gi|194166390|gb|EDW81291.1| GK11105 [Drosophila willistoni]
Length = 642
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 521 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKR 580
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + S
Sbjct: 581 HREQMGSRYIELFYDGKS 598
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ V E+ I +FF+ + + D + + GR +GEA V F + +D QA
Sbjct: 152 VVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVTDRRGRATGEAFVQFESQDDTEQA 210
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ ++R I HRYIE+F +S
Sbjct: 211 LGRNREKIGHRYIEIFRSS 229
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGE 95
G R E+ G + +RGLP+ K+I+DF V +++ + +G+ +GE
Sbjct: 41 GARVKIENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGE 100
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
A V A+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 101 AYVEVASQEDVEEARKLNKASMGHRYIEVF--TATPK 135
>gi|358342654|dbj|GAA27695.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 295
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ MRGLPF DI+DFF P+ P+ V + +KNG+P+G ADVYFAT ED +AM + +
Sbjct: 220 IRMRGLPFAATVNDILDFFRPIQPLTVTMRTHKNGKPNGMADVYFATVEDTKEAMKRHKA 279
Query: 116 NIRHRYIELF 125
+ RYIELF
Sbjct: 280 PMGFRYIELF 289
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
T+ + GLPF V + I FF V I +GRP+GEA V F + E A A K
Sbjct: 14 TLRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVARLAAGK 73
Query: 113 DRTNIRHRYIEL 124
+ I RY+E+
Sbjct: 74 HKHLIDGRYVEI 85
>gi|198454671|ref|XP_002137931.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
gi|198132901|gb|EDY68489.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
Length = 610
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF PV P V INY K G SG AD YF T+ED+ AM +
Sbjct: 496 YYTIHMRGLPYTSFENDVFKFFEPVRPANVRINYNKKGLHSGTADAYFDTYEDSQIAMKR 555
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 556 HREQMGSRYIELFYDGKT 573
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + G G+ V +RGLP+ V E+ I +FF+ + + D + +
Sbjct: 130 ATPKEAKEAMRKIGGHGNAFVVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRR 188
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + ED QA+ ++R I HRYIE+F +S
Sbjct: 189 GRATGEAFVQFESQEDTEQALGRNREKIGHRYIEIFRSS 227
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G + +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 45 ENVGESPKFIRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVA 104
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
T ED +A ++ ++ HRYIE+F +++P+
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVF--TATPK 133
>gi|195329730|ref|XP_002031563.1| GM26067 [Drosophila sechellia]
gi|194120506|gb|EDW42549.1| GM26067 [Drosophila sechellia]
Length = 563
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 456 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 515
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 516 HREQMGSRYIELFYDGKT 533
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPK 130
>gi|195571637|ref|XP_002103809.1| GD20630 [Drosophila simulans]
gi|194199736|gb|EDX13312.1| GD20630 [Drosophila simulans]
Length = 587
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 540 HREQMGSRYIELFYDGKT 557
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPK 130
>gi|24646105|ref|NP_650120.1| glorund, isoform A [Drosophila melanogaster]
gi|24646107|ref|NP_731639.1| glorund, isoform B [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| glorund, isoform A [Drosophila melanogaster]
gi|7299518|gb|AAF54705.1| glorund, isoform B [Drosophila melanogaster]
gi|19528177|gb|AAL90203.1| AT27789p [Drosophila melanogaster]
Length = 586
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 540 HREQMGSRYIELFYDGKT 557
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-DIKTDREGILFVMDRR 185
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPK 130
>gi|25013120|gb|AAN71659.1| SD14463p [Drosophila melanogaster]
Length = 359
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 253 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 312
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 313 HREQMGSRYIELFYDGKT 330
>gi|449280564|gb|EMC87832.1| G-rich sequence factor 1, partial [Columba livia]
Length = 331
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADV 98
RPG +ES H VHMRG P + + +DI++FF+P+ P + + Y +G +GEADV
Sbjct: 234 RPGHISESESVSSPLHFVHMRGFPAQTSAQDIINFFAPLKPTRIMVEYNCHGDATGEADV 293
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+F + EDA+ AM+K+ + ++ IELFLN
Sbjct: 294 HFESREDAVAAMAKEGSRLQCSAIELFLN 322
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
+ES V +RGLPF E DI DFFS + + Y+ R +GEA V FA + A
Sbjct: 99 DESQAINDGVVMLRGLPFSSTEDDIADFFSGLKITDIAFVYRGERRTGEAFVQFAAPDMA 158
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+A+S+ R + +RYIE++++
Sbjct: 159 AKALSRHREYMGNRYIEVYVS 179
>gi|195501785|ref|XP_002097942.1| GE10080 [Drosophila yakuba]
gi|194184043|gb|EDW97654.1| GE10080 [Drosophila yakuba]
Length = 597
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 483 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 542
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 543 HREQMGSRYIELFYDGKT 560
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 128 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 186
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 187 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 225
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 43 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVA 102
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 103 SQEDVEEARKLNKASMGHRYIEVF--TATPK 131
>gi|194901932|ref|XP_001980505.1| GG17187 [Drosophila erecta]
gi|190652208|gb|EDV49463.1| GG17187 [Drosophila erecta]
Length = 595
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T+ED+ AM +
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 540 HREQMGSRYIELFYDGKT 557
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-EIKTDREGILFVMDRR 185
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 224
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPK 130
>gi|390361167|ref|XP_003729861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 455
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
++VHMRGLPF V E+DI +FF P V I+ NG+ +G A V F TH++A AM KD
Sbjct: 325 YSVHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 114 RTNIRHRYIELFLNSS 129
+ NI RYIELFL+SS
Sbjct: 385 KNNIGSRYIELFLHSS 400
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 15/117 (12%)
Query: 36 FAGPRPGDRWV-NESSGP---GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---K 88
F R WV N +SG G V +RGLPF ++++I +FFS + I
Sbjct: 83 FKSKRSEMEWVTNRNSGGADGGEGLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDN 142
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN-------SSSP-RGGVGG 137
+GR +GEA V FA+ E A +A+ K ++++ HRYIE+F + +++P RGG GG
Sbjct: 143 DGRRTGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTRGGRGG 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPV----VPVYVDINY-KNGRPSGEADVYFATHEDAMQA 109
+ + RGLP+ ++++DFF P + + +GRPSGE V F + D QA
Sbjct: 8 YVIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQA 67
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
M KD+ ++ RYIELF + S
Sbjct: 68 MKKDKNYLQKRYIELFKSKRS 88
>gi|350592780|ref|XP_003483535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Sus
scrofa]
Length = 161
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Query: 71 IVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
+ FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+ N++HRYIELFLNS+
Sbjct: 26 LQQFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNST 85
>gi|170592721|ref|XP_001901113.1| Heterogeneous nuclear ribonucleoprotein H' [Brugia malayi]
gi|158591180|gb|EDP29793.1| Heterogeneous nuclear ribonucleoprotein H', putative [Brugia
malayi]
Length = 385
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 29 WNDRP--GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN 86
W D P GG G P R ++ P + + MRGLP+R E+DI+DFF P+ P +D+
Sbjct: 284 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 341
Query: 87 YKNG--RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
Y+ G RPSGEA V F D AM ++R + RY+EL
Sbjct: 342 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 382
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 52 PGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHED 105
P T V + GLP+ +++IV FF P+ + + + +G+P GEA V F E
Sbjct: 105 PARETSIVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDES 164
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A +A++K++ I+HRY++++ +S
Sbjct: 165 ASKALAKNKEYIQHRYVDIYPSS 187
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP+ E D+ +FF I ++GR SGE V F++ ED A++K
Sbjct: 7 VMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGFVVFSSREDYDFALTK 66
Query: 113 DRTNIRHRYIELFLNSS 129
D+ I RY+EL SS
Sbjct: 67 DKKYIGKRYVELQQVSS 83
>gi|312065923|ref|XP_003136024.1| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 383
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 29 WNDRP--GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN 86
W D P GG G P R ++ P + + MRGLP+R E+DI+DFF P+ P +D+
Sbjct: 282 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 339
Query: 87 YKNG--RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
Y+ G RPSGEA V F D AM ++R + RY+EL
Sbjct: 340 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 380
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 46 VNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVY 99
V + + PG T V + GLP+ +++IV FF P+ + + + +G+P GEA V
Sbjct: 99 VADPNLPGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVA 158
Query: 100 FATHEDAMQAMSKDRTNIRHRYIEL 124
F + A +A++K++ I+HRY L
Sbjct: 159 FTDEDSASKALAKNKEYIQHRYCSL 183
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP+ E D+ +FF I ++GR SGE V F++ ED A++K
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 113 DRTNIRHRYIELFLNSS 129
D+ I RY+EL SS
Sbjct: 67 DKKYIGKRYVELQQVSS 83
>gi|393908924|gb|EFO28044.2| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 370
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 29 WNDRP--GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN 86
W D P GG G P R ++ P + + MRGLP+R E+DI+DFF P+ P +D+
Sbjct: 269 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVL 326
Query: 87 YKNG--RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
Y+ G RPSGEA V F D AM ++R + RY+EL
Sbjct: 327 YEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 367
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 46 VNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVY 99
V + + PG T V + GLP+ +++IV FF P+ + + + +G+P GEA V
Sbjct: 99 VADPNLPGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVA 158
Query: 100 FATHEDAMQAMSKDRTNIRHRYIELFLNS 128
F + A +A++K++ I+HRY++++ +S
Sbjct: 159 FTDEDSASKALAKNKEYIQHRYVDIYPSS 187
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP+ E D+ +FF I ++GR SGE V F++ ED A++K
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 113 DRTNIRHRYIELFLNSS 129
D+ I RY+EL SS
Sbjct: 67 DKKYIGKRYVELQQVSS 83
>gi|195108109|ref|XP_001998635.1| GI24079 [Drosophila mojavensis]
gi|193915229|gb|EDW14096.1| GI24079 [Drosophila mojavensis]
Length = 605
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T++D+ AM +
Sbjct: 484 YYTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKR 543
Query: 113 DRTNIRHRYIELFLNSSS 130
R + RYIELF + +
Sbjct: 544 HREQMGSRYIELFYDGKT 561
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + ++ G GH V +RGLP+ V E+ I +FF+ + + D + +
Sbjct: 137 ATPKEAKEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRR 195
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 196 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
S G + +RGLP+ K+I+DF V +++ + +G+ +GEA V A+
Sbjct: 53 SVGESPKFIRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVEVAS 112
Query: 103 HEDAMQAMSKDRTNIRHRYIELFL 126
ED +A ++ ++ HRYIE+F+
Sbjct: 113 QEDVEEARKLNKASMGHRYIEVFV 136
>gi|326918872|ref|XP_003205709.1| PREDICTED: g-rich sequence factor 1-like, partial [Meleagris
gallopavo]
Length = 343
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGD--RWVNESSGPGHHT---------VHMRGLPFRVNEKD 70
G +R +D G + R + ESSGP T VH+RG P +V+ +D
Sbjct: 217 GSTAEERESDYTRGSSAEREKEVASEAAESSGPSSQTGSILSSLRAVHVRGFPTQVSAQD 276
Query: 71 IVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
I+DFF+P+ P + I Y +G +GEADV+F +++DA+ AM+K+R ++ +E+FL
Sbjct: 277 IIDFFAPLRPRRILIEYNSDGVATGEADVHFESYDDAVTAMAKERAQLQFGAVEVFLKE 335
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF E DI DFF+ + + Y+ R +GEA V FA E +A+ + +
Sbjct: 123 VVLLRGLPFDSTEDDIADFFAGLRITDITFVYRGERKTGEAYVQFAAPEMVAKALLRHKE 182
Query: 116 NIRHRYIELFLNSS 129
+ +RYIE+++++
Sbjct: 183 YMENRYIEVYISTK 196
>gi|390361165|ref|XP_793087.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 492
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
++VHMRGLPF V E+DI +FF P V I+ NG+ +G A V F TH++A AM KD
Sbjct: 325 YSVHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 114 RTNIRHRYIELFLN 127
+ NI RYIELFL+
Sbjct: 385 KNNIGSRYIELFLH 398
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 15/117 (12%)
Query: 36 FAGPRPGDRWV-NESSGP---GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---K 88
F R WV N +SG G V +RGLPF ++++I +FFS + I
Sbjct: 83 FKSKRSEMEWVTNRNSGGADGGEGLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDN 142
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN-------SSSP-RGGVGG 137
+GR +GEA V FA+ E A +A+ K ++++ HRYIE+F + +++P RGG GG
Sbjct: 143 DGRRTGEAFVLFASKEIAEKALKKHKSHMGHRYIEVFKSFPDELRRATNPTRGGRGG 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPV----VPVYVDINY-KNGRPSGEADVYFATHEDAMQA 109
+ + RGLP+ ++++DFF P + + +GRPSGE V F + D QA
Sbjct: 8 YVIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGECFVEFDSEGDFQQA 67
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
M KD+ ++ RYIELF + S
Sbjct: 68 MKKDKNYLQKRYIELFKSKRS 88
>gi|390465839|ref|XP_003733475.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Callithrix jacchus]
Length = 573
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
P H V MRG DI + FSP+ PV V I +GR + +ADV FAT E+A AM
Sbjct: 450 PTSHCVFMRGCHAAETNSDIYNLFSPLNPVRVHIEMGPDGRLTCKADVEFATWEEAGAAM 509
Query: 111 SKDRTNIRHRYIELFLN 127
SKDR N++HRYIEL LN
Sbjct: 510 SKDRANMQHRYIELSLN 526
>gi|432117035|gb|ELK37602.1| Heterogeneous nuclear ribonucleoprotein H [Myotis davidii]
Length = 188
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 74 FFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
FSP+ PV V I +GR +GEADV FATHEDA+ AMSKD+ N++HRY+EL +++
Sbjct: 57 IFSPLNPVRVHIAISPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELLNSTAGAS 116
Query: 133 GGVGGS 138
GG GS
Sbjct: 117 GGAYGS 122
>gi|118090272|ref|XP_420600.2| PREDICTED: G-rich sequence factor 1 [Gallus gallus]
Length = 410
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
TVH+RG P +V+ +DIVDFF+P+ P + I Y +G +GEADV+F +++DA+ AM+K+R
Sbjct: 329 TVHVRGFPPQVSAQDIVDFFAPLKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKER 388
Query: 115 TNIRHRYIELFLNSSSPRGG 134
++ +E+FL G
Sbjct: 389 AQLQFGTVEVFLKERPKAAG 408
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATH 103
R+ +E G V +RGLPF E DI DFF+ + + Y+ R +GEA V FA
Sbjct: 180 RYESEVMSDG--VVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAP 237
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNSS 129
E +A+ + + + +RYIE+++++
Sbjct: 238 EMVAKALLRHKEYMENRYIEVYISTK 263
>gi|72092573|ref|XP_792820.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Strongylocentrotus purpuratus]
Length = 752
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDA 106
GH V MRGLPF +EKD+VDFF P +PV + + KNG+ +G+A V FA+ +
Sbjct: 320 GHIIVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAV 379
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R + +RYIE+F ++++
Sbjct: 380 SKALSKHREYLGNRYIEIFRSTTA 403
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHED 105
S P V RGLP++ +++D+ FF + V + +N +GR +GE V+F + E
Sbjct: 215 SIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLN-THGRRNGEVMVHFESSEQ 273
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ + + N+ RY+E+F
Sbjct: 274 RDMALQRHKHNLGKRYVEVF 293
Score = 36.2 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G + MRGLP+ + +DI+ F V++ +N + G+P+GEA + +
Sbjct: 456 TAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ-GKPNGEAFIQMTS 514
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
E A + A + +R RY+E+F
Sbjct: 515 AERACLAAQTCHMKYMRERYVEVF 538
>gi|390333349|ref|XP_003723691.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Strongylocentrotus purpuratus]
Length = 720
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDA 106
GH V MRGLPF +EKD+VDFF P +PV + + KNG+ +G+A V FA+ +
Sbjct: 320 GHIIVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAV 379
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R + +RYIE+F ++++
Sbjct: 380 SKALSKHREYLGNRYIEIFRSTTA 403
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDA-MQ 108
+ MRGLP+ + +DI+ F V++ +N + G+P+GEA + + E A +
Sbjct: 463 CIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ-GKPNGEAFIQMTSAERACLA 521
Query: 109 AMSKDRTNIRHRYIELFLNSSSPRGGVGGSGF 140
A + +R RY+E+F S V SG
Sbjct: 522 AQTCHMKYMRERYVEVFQCSGEEMQMVLTSGM 553
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHED 105
S P V RGLP++ +++D+ FF + V + +N +GR +GE V+F + E
Sbjct: 215 SIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLN-THGRRNGEVMVHFESSEQ 273
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ + + N+ RY+E+F
Sbjct: 274 RDMALQRHKHNLGKRYVEVF 293
>gi|82621148|gb|ABB86262.1| unknown [Solanum tuberosum]
Length = 364
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 7/98 (7%)
Query: 38 GPRPGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGR 91
G P R +ES HT + +RGLPF +++DI+DFF P +++ ++ GR
Sbjct: 153 GSVPRARSADESKTLPEHTGVLWLRGLPFSASKEDIIDFFKDFELPEKSIHITATFE-GR 211
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
P+GEA V FA+ +D+ AM+KDR I +RYIELF +SS
Sbjct: 212 PTGEAFVEFASADDSRAAMAKDRMTIGNRYIELFASSS 249
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN---YKNGRPSGEADVYFATHEDAMQAMSK 112
+ MRGLPF + DI+DFF I+ +GRP+GEA V FA+ +DA A++K
Sbjct: 277 ILRMRGLPFSAGKDDIMDFFKDFALTEDAIHVTFLSDGRPTGEAFVEFASTDDAKAALAK 336
Query: 113 DRTNIRHRYIELFLNS 128
DR + RY+ELF +S
Sbjct: 337 DRMTLGSRYVELFPSS 352
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF +E +I DF + V V + +K GR +GEA A+
Sbjct: 59 PPFPVVRLRGLPFDCSETEIADFLHGLDVVDVLLVHKGGRFTGEAYCVLGYPLQVDFALQ 118
Query: 112 KDRTNIRHRYIELF 125
++R NI RY+E+F
Sbjct: 119 RNRQNIGRRYVEVF 132
>gi|390361159|ref|XP_798587.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 3
[Strongylocentrotus purpuratus]
Length = 500
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++HMRGLP++ E+DI FF P V I NGR +GEAD F T E A AM+K +
Sbjct: 316 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 375
Query: 115 TNIRHRYIELFLNS 128
+ + RYIELFLN+
Sbjct: 376 SEMGPRYIELFLNT 389
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMS 111
V RGLP+ +DIV FFS V+ D ++ GRPSGE V F +H+D ++ +
Sbjct: 8 VRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGLK 67
Query: 112 KDRTNIRHRYIELFLNSSS 130
K+ +I HRYIE+F + +S
Sbjct: 68 KNNNHIGHRYIEVFRSKNS 86
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEA 96
R GD+ E+ G V +RGLPF DI DFF I +GR +GEA
Sbjct: 94 RGGDKAKEENDG----CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEA 149
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V F + + A A+SK + N+ HRYIE+F ++S
Sbjct: 150 YVQFVSKDIAEGALSKHKANMGHRYIEVFQCNAS 183
>gi|390361163|ref|XP_003729860.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 521
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++HMRGLP++ E+DI FF P V I NGR +GEAD F T E A AM+K +
Sbjct: 331 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 390
Query: 115 TNIRHRYIELFLNS 128
+ + RYIELFLN+
Sbjct: 391 SEMGPRYIELFLNT 404
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMS 111
V RGLP+ +DIV FFS V+ D ++ GRPSGE V F +H+D ++ +
Sbjct: 8 VRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGLK 67
Query: 112 KDRTNIRHRYIELFLNSSS 130
K+ +I HRYIE+F + +S
Sbjct: 68 KNNNHIGHRYIEVFRSKNS 86
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEA 96
R GD+ E+ G V +RGLPF DI DFF I +GR +GEA
Sbjct: 94 RGGDKAKEENDG----CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEA 149
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V F + + A A+SK + N+ HRYIE+F ++S
Sbjct: 150 YVQFVSKDIAEGALSKHKANMGHRYIEVFQCNAS 183
>gi|390361161|ref|XP_003729859.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 515
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++HMRGLP++ E+DI FF P V I NGR +GEAD F T E A AM+K +
Sbjct: 331 SIHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHK 390
Query: 115 TNIRHRYIELFLNS 128
+ + RYIELFLN+
Sbjct: 391 SEMGPRYIELFLNT 404
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMS 111
V RGLP+ +DIV FFS V+ D ++ GRPSGE V F +H+D ++ +
Sbjct: 8 VRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGLK 67
Query: 112 KDRTNIRHRYIELFLNSSS 130
K+ +I HRYIE+F + +S
Sbjct: 68 KNNNHIGHRYIEVFRSKNS 86
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEA 96
R GD+ E+ G V +RGLPF DI DFF I +GR +GEA
Sbjct: 94 RGGDKAKEENDG----CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEA 149
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V F + + A A+SK + N+ HRYIE+F ++S
Sbjct: 150 YVQFVSKDIAEGALSKHKANMGHRYIEVFQCNAS 183
>gi|146197828|dbj|BAF57627.1| hnRNP F protein [Dugesia japonica]
Length = 344
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G ++HMRGLP+ EKD+ +FF+P+ V I +G+ +GEA+ F + DA++AM
Sbjct: 266 GPLSIHMRGLPYTATEKDVHEFFAPLRVAEVKIQLGPDGKNTGEAEADFYSENDAVKAME 325
Query: 112 KDRTNIRHRYIELFLNSS 129
KDR + RYIELF SS
Sbjct: 326 KDRCKMSWRYIELFRGSS 343
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG---RPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ V ++DI FFS ++ + G P+GEA V F T EDA A+ +
Sbjct: 96 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRH 155
Query: 114 RTNIRHRYIELFLNS 128
IR RYIE++ +S
Sbjct: 156 NQCIRSRYIEIYKSS 170
>gi|351700500|gb|EHB03419.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
Length = 260
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVG 136
++GR GEADV F THED + AMSKD+ N++HRYIELFLN S+PRGG G
Sbjct: 159 RDGRAKGEADVEFVTHEDPVAAMSKDKNNMQHRYIELFLN-STPRGGSG 206
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV + GLPF ++++IV FF ++P + + ++Y+ GR +GE
Sbjct: 3 WVMKHNGPNDASDGTVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQ-GRSTGETF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|341882686|gb|EGT38621.1| hypothetical protein CAEBREN_04314 [Caenorhabditis brenneri]
Length = 591
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
S+ P V +RGLPF EKDI +FF+ + V GRP+GEA V F T EDA +
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 109 AMSKDRTNIRHRYIELF 125
M DR + RYIE+F
Sbjct: 119 GMENDRKEMSSRYIEIF 135
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFS-----PVVPVYVDINYKNGRPSGEADVYFATHED 105
G +H V +RG+P+ E+D++ FF+ P V RPSGEA V FAT
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A +AM + ++ RY+E+F++S
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSS 236
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++MRGLP+ ++ + FFSP+ + + +N + GRPSG+A F + D +S++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVN-ETGRPSGDAIAEFDSFGDLQAGLSRNN 379
Query: 115 TNIRHRYIELFLNSSSP 131
+ RY+ELF +P
Sbjct: 380 QRMGRRYVELFDTRGAP 396
>gi|341899985|gb|EGT55920.1| hypothetical protein CAEBREN_28420 [Caenorhabditis brenneri]
Length = 591
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
S+ P V +RGLPF EKDI +FF+ + V GRP+GEA V F T EDA +
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 109 AMSKDRTNIRHRYIELF 125
M DR + RYIE+F
Sbjct: 119 GMENDRKEMSSRYIEIF 135
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFS-----PVVPVYVDINYKNGRPSGEADVYFATHED 105
G +H V +RG+P+ E+D++ FF+ P V RPSGEA V FAT
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A +AM + ++ RY+E+F++S
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSS 236
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++MRGLP+ ++ + FFSP+ + + +N + GRPSG+A F + D +S++
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVN-ETGRPSGDAIAEFDSFGDLQAGLSRNN 379
Query: 115 TNIRHRYIELFLNSSSP 131
+ RY+ELF +P
Sbjct: 380 QRMGRRYVELFDTRGAP 396
>gi|449666027|ref|XP_002162990.2| PREDICTED: probable RNA-binding protein 19-like [Hydra
magnipapillata]
Length = 914
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
TV MRG+PF+ +EK++++FF P++ DI + K+G+ SG A V F T ED A+ K
Sbjct: 306 TVKMRGIPFKCSEKEVIEFFKPLI--IDDIRFPKNKDGKSSGYAFVDFKTIEDVKSALKK 363
Query: 113 DRTNIRHRYIELF 125
D+ I+ RYIELF
Sbjct: 364 DKQKIQGRYIELF 376
>gi|313233607|emb|CBY09778.1| unnamed protein product [Oikopleura dioica]
Length = 425
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
H V MRG+PFR E+ + FF + V +I + RP+G A V F THEDA +AM
Sbjct: 235 HVVQMRGIPFRATEEQVRSFFGLDFEISAVQFEIG-ADHRPTGRASVAFPTHEDAEKAMK 293
Query: 112 KDRTNIRHRYIELFLNSS--SPRGGVGGSGFSRSELWAVH 149
KD+ + RYIEL + SS +P G+G +G L+ +H
Sbjct: 294 KDKECMGKRYIELMILSSQNTPIDGIGPNG---EYLFMIH 330
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGR--PSGEADVYFATHEDAMQAMSKDR 114
+HMRGLPFRV+ +DIV FF P +P+ +DI+ + G P+G V F + ++ A+ +D+
Sbjct: 329 IHMRGLPFRVHARDIVSFFDP-IPI-LDIHLEMGPKGPTGAGQVAFFSAQERSDALKRDK 386
Query: 115 TNIRHRYIELFLNSSSP 131
NI RYIELF P
Sbjct: 387 ENIGDRYIELFAIKPLP 403
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY---VDINY---KNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ ++V+FF+ +V + +++ K GRP+GEA + T D +A
Sbjct: 21 VIRLRGLPYSCCGAEVVEFFADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKA 80
Query: 110 MSKDRTNIRHRYIELF 125
M KDRT ++ RYIE+F
Sbjct: 81 MIKDRTQLQDRYIEIF 96
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVY--VDINYKNGRPSGEADVYFATHE 104
+++ P + V +RG+P++ I F + +P + V + GR +GEA V +HE
Sbjct: 113 QANQPWENVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHE 172
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
A QA+ K + I RYIE+F
Sbjct: 173 HAEQALLKHKECIDRRYIEVF 193
>gi|324507711|gb|ADY43264.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 435
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V+MRGLP+ N DI DFF P+ V + + Y ++ RPSG+A V F+T +A A+S+++
Sbjct: 277 VYMRGLPYNANALDIEDFFKPLNCVEIRLGYNEDRRPSGDAYVLFSTMAEARDALSRNKK 336
Query: 116 NIRHRYIELFLNSSSP 131
+I RYIELF ++ P
Sbjct: 337 SIGTRYIELFSGANVP 352
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
++ V +RG+PF DI +FFS V V +D GRPSGEA V A + A A+
Sbjct: 110 NYVVRLRGIPFSATVADIKEFFSGLDVADVVIDKE-PGGRPSGEAFVRLANKQHAEMALE 168
Query: 112 KDRTNIRHRYIELFLNS 128
+++ N+ RY+E+F +S
Sbjct: 169 RNKKNMGTRYVEVFRSS 185
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF E D+ +F + V GR SGE V +A D+
Sbjct: 10 VRLRGLPFSAKEDDVRNFLQGLYVRSVTFTLTATGRASGECYVELTDAAAVEEAKKFDKK 69
Query: 116 NIRHRYIELFLNSSS 130
+ RYIE+F S S
Sbjct: 70 EMSSRYIEVFSVSES 84
>gi|312081197|ref|XP_003142925.1| RNA binding protein [Loa loa]
gi|307761913|gb|EFO21147.1| RNA binding protein [Loa loa]
Length = 547
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V+MRGLP+ N DI DFF P+ V + + + ++ RPSG+A V F T +A AMS+++
Sbjct: 332 VYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTLAEARDAMSRNKQ 391
Query: 116 NIRHRYIELFLNSSSP 131
I +RYIELF + P
Sbjct: 392 CIGNRYIELFTAADVP 407
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
P + V +RG+PF D+ +FF+ V V +D GRPSGEA V FA+ + A A
Sbjct: 156 PYNFVVRLRGIPFSATNDDVKEFFTGLEVADVVIDKEL-GGRPSGEAFVRFASKQHAEMA 214
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ ++R N+ RY+E+F +S
Sbjct: 215 LERNRNNMGSRYVEVFRSS 233
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLPF E D+ F + V + GR SGE V A +A D+
Sbjct: 63 IRLRGLPFSAKEDDVRAFLEGLEVRSVTFTLTSMGRASGECYVELVDKAAAEEAKRFDKQ 122
Query: 116 NIRHRYIELF 125
+ +RYIE+F
Sbjct: 123 EMNNRYIEVF 132
>gi|357460387|ref|XP_003600475.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355489523|gb|AES70726.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 259
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 41 PGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSG 94
P + +E HT + +RGLPF N+ DI+DFF V +++ +N GRPSG
Sbjct: 155 PRAKSYDEGKDSAEHTGVLRLRGLPFSANKDDIMDFFKEYVLSEDSIHIVMN-SEGRPSG 213
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F +D+ AM+KDR + RYIELF
Sbjct: 214 EAYVEFENADDSKAAMAKDRMTLGSRYIELF 244
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
+V++ P V +RGLPF E D+ +FF + V V +K G+ SGE
Sbjct: 47 YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPL 106
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
A+ ++R NI RY+E+F
Sbjct: 107 QVDFALQRNRQNIGRRYVEVF 127
>gi|170577075|ref|XP_001893871.1| RNA binding protein [Brugia malayi]
gi|158599846|gb|EDP37285.1| RNA binding protein, putative [Brugia malayi]
Length = 519
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
++MRGLP+ N DI DFF P+ V + + + ++ RPSG+A V F T +A AMS+++
Sbjct: 305 IYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQ 364
Query: 116 NIRHRYIELFLNSSSP 131
I +RYIELF + P
Sbjct: 365 CIGNRYIELFTAADVP 380
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
P + V +RG+PF D+ +FFS V V +D GRPSGEA V FA+ + A A
Sbjct: 129 PYNFVVRLRGIPFSATNNDVKEFFSGLEVADVVIDKEL-GGRPSGEAFVRFASKQHAEMA 187
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ ++R N+ RY+E+F +S
Sbjct: 188 LERNRNNMGSRYVEVFRSS 206
>gi|402589318|gb|EJW83250.1| hypothetical protein WUBG_05840 [Wuchereria bancrofti]
Length = 451
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
++MRGLP+ N DI DFF P+ V + + + ++ RPSG+A V F T +A AMS+++
Sbjct: 237 IYMRGLPYSANALDIEDFFKPLNCVEIQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQ 296
Query: 116 NIRHRYIELFLNSSSP 131
I +RYIELF + P
Sbjct: 297 CIGNRYIELFTAADVP 312
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
P + V +RG+PF D+ +FFS V V +D GRPSGEA V FA+ + A A
Sbjct: 61 PYNFVVRLRGIPFSATNDDVKEFFSGLEVADVVIDKEL-GGRPSGEAFVRFASKQHAEMA 119
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ ++R N+ RY+E+F +S
Sbjct: 120 LERNRNNMGSRYVEVFRSS 138
>gi|255544880|ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223547409|gb|EEF48904.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 260
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYV 83
+D GG P + +E HT + +RGLPF + DI++FF V V++
Sbjct: 145 SDARGGSPRRAPRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDSVHI 204
Query: 84 DINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+N GRP+GEA V FA+ ED+ AM+KDR + RYIELF +S
Sbjct: 205 TMN-SEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELFPSS 248
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF E D+ +FF + V V +K G+ +GEA A+
Sbjct: 56 PPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQ 115
Query: 112 KDRTNIRHRYIELF 125
K+R N+ RY+E+F
Sbjct: 116 KNRQNMGRRYVEVF 129
>gi|26251966|gb|AAH40485.1| GRSF1 protein [Homo sapiens]
Length = 435
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD--INYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ + VY+ ++Y+ R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVYITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
>gi|147832351|emb|CAN73277.1| hypothetical protein VITISV_031233 [Vitis vinifera]
Length = 260
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 41 PGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSG 94
P + +E HT + +RGLPF +++DI+DFF V +++ +N GRP+G
Sbjct: 156 PKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLSEDSIHMTVN-SEGRPTG 214
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V F ED+ AM+KDR + RYIELF +S
Sbjct: 215 EAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSS 248
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 28 RWNDRPGGFAGPRPGDRWVNESSG-------PGHHTVHMRGLPFRVNEKDIVDFFSPVVP 80
R D+ F G PG ++ +S P V +RGLPF +E D+ +FF +
Sbjct: 59 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 118
Query: 81 VYVDINYKNGR 91
V V +KNGR
Sbjct: 119 VDVLFVHKNGR 129
>gi|225435437|ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
vinifera]
Length = 258
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 41 PGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSG 94
P + +E HT + +RGLPF +++DI+DFF V +++ +N GRP+G
Sbjct: 154 PKAKSNDEGKESAEHTGVLRLRGLPFSASKEDIMDFFKDFVLSEDSIHMTVN-SEGRPTG 212
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V F ED+ AM+KDR + RYIELF +S
Sbjct: 213 EAFVEFTNAEDSKAAMAKDRMTLGSRYIELFPSS 246
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 28 RWNDRPGGFAGPRPGDRWVNESSG-------PGHHTVHMRGLPFRVNEKDIVDFFSPVVP 80
R D+ F G PG ++ +S P V +RGLPF +E D+ +FF +
Sbjct: 22 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 81
Query: 81 VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V V +KNGR +GEA A+ ++R N+ RY+E+F
Sbjct: 82 VDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVF 126
>gi|224104153|ref|XP_002313339.1| predicted protein [Populus trichocarpa]
gi|222849747|gb|EEE87294.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 41 PGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSG 94
P + +E HT + +RGLPF ++ DI++FF V +++ +N GRP+G
Sbjct: 149 PRAKSYDEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFVLSEDSIHITMN-SEGRPTG 207
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA ED+ AM+KDR + RYIELF +S
Sbjct: 208 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 241
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 29 WNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK 88
+N P G+A S P V +RGLPF E D+ +FF + V V +K
Sbjct: 37 YNAPPNGYA-----------SQPPHFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHK 85
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
G+ SGEA A+ K+R N+ RY+E+F
Sbjct: 86 GGKFSGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVF 122
>gi|268536900|ref|XP_002633585.1| Hypothetical protein CBG05462 [Caenorhabditis briggsae]
Length = 588
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF EKDI +FF+ ++ V GRP+GEA V FA+ +DA + M DR
Sbjct: 65 VRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTTGRPNGEAYVEFASTDDAGRGMECDRKE 124
Query: 117 IRHRYIELF 125
+ +RYIE+F
Sbjct: 125 MSNRYIEIF 133
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-----NYKNGRPSGEADVYFATHED 105
G +H V +RG+P+ E+D+ FF + P +I + RPSGEA V F T +
Sbjct: 152 GEENHVVRLRGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRF-TSQA 210
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A +AM + ++ RY+E+F++S
Sbjct: 211 AAKAMEYNNMHMGTRYVEVFMSS 233
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++MRGLP+ + I FFSP V + + IN + GR SG+A F +++D ++++
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRVHSIKLGIN-EAGRSSGDAIAEFDSYQDLQSGLARNN 387
Query: 115 TNIRHRYIELFLNSSSP 131
+ RY+ELF +P
Sbjct: 388 QRMGRRYVELFDTRGAP 404
>gi|308477529|ref|XP_003100978.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
gi|308264322|gb|EFP08275.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
Length = 621
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 49 SSGP--GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
SSGP V +RGLPF EKDI +FFS + V GRP+GEA V F T +DA
Sbjct: 66 SSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDA 125
Query: 107 MQAMSKDRTNIRHRYIE 123
+AM DR + +RYIE
Sbjct: 126 GKAMENDRKEMSNRYIE 142
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
++MRGLP+ + I FFSP+ + + IN GRPSG+A F ++ D +SK+
Sbjct: 354 IYMRGLPYDADHYAIEAFFSPLRCHSIKLGIN-DTGRPSGDAIAEFDSYNDLQAGLSKNN 412
Query: 115 TNIRHRYIELFLNSSSP 131
+ RY+ELF +P
Sbjct: 413 QRMGRRYVELFDTRGAP 429
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-----KNGRPSGEADVYFATHED 105
G +H V +RG+P+ E+DI FF + P+ +I RPSGEA V FAT
Sbjct: 178 GEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQAA 237
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A AM + ++ RYIE+F++S
Sbjct: 238 AEAAMEYNNRHMGTRYIEVFMSS 260
>gi|113951757|ref|NP_001039317.1| G-rich sequence factor 1 [Danio rerio]
gi|112418830|gb|AAI22227.1| Zgc:153305 [Danio rerio]
gi|182890996|gb|AAI64250.1| Zgc:153305 protein [Danio rerio]
Length = 301
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ +HMRGLPF +DIV FF+PV + V + + G+P+GEA+ YF THEDA+ AMS
Sbjct: 244 NVIHMRGLPFDAKAEDIVKFFAPVRLMKVVVEFGPEGKPTGEAEAYFKTHEDAVLAMS 301
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ E DI+ FFS VV V + +N + G+ SG+A V FAT A +A+
Sbjct: 135 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILN-RRGKSSGDAFVEFATKAMAEKALK 193
Query: 112 KDRTNIRHRYIELF--LNSSSP 131
KDR + +RYIE+F + S+ P
Sbjct: 194 KDREILGNRYIEIFPAMKSAIP 215
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYF 100
E+ V +GLP+ +DI+ FFS V V++ N K G+PSG+A +
Sbjct: 29 EENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYN-KYGKPSGQAFIEL 87
Query: 101 ATHEDAMQAMSKDRTNIRHRYIEL 124
ED +A+ + R R R IE+
Sbjct: 88 EHEEDVGKALDQHRHYPRDRLIEV 111
>gi|297746312|emb|CBI16368.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFAT 102
NE S + +RGLPF +++DI+DFF V +++ +N GRP+GEA V F
Sbjct: 139 NEVSDTRGGVLRLRGLPFSASKEDIMDFFKDFVLSEDSIHMTVN-SEGRPTGEAFVEFTN 197
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNS 128
ED+ AM+KDR + RYIELF +S
Sbjct: 198 AEDSKAAMAKDRMTLGSRYIELFPSS 223
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 28 RWNDRPGGFAGPRPGDRWVNESSG-------PGHHTVHMRGLPFRVNEKDIVDFFSPVVP 80
R D+ F G PG ++ +S P V +RGLPF +E D+ +FF +
Sbjct: 22 RITDQGSSFYGGSPGSNFMYNASPYSYIGQPPPFPVVRLRGLPFDCSEADVAEFFHSLDI 81
Query: 81 VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V V +KNGR +GEA A+ ++R N+ RY+E+F
Sbjct: 82 VDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMGRRYVEVF 126
>gi|25153681|ref|NP_741422.1| Protein HRPF-2 [Caenorhabditis elegans]
gi|351059337|emb|CCD74180.1| Protein HRPF-2 [Caenorhabditis elegans]
Length = 610
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P + +RGLPF EKDI +FF+ + V GRP+GEA V F E+A +AM
Sbjct: 61 PRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKAME 120
Query: 112 KDRTNIRHRYIELF 125
DR I +RYIE+F
Sbjct: 121 NDRKEISNRYIEVF 134
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V+MRGLP+ ++ I FFSP+ V + IN + GRPSG+A F + D A+S++
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGIN-ETGRPSGDAIAEFDNYNDLQVALSRNN 385
Query: 115 TNIRHRYIELFLNSSSP 131
+ RY+ELF N +P
Sbjct: 386 QRMGRRYVELFDNRGAP 402
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-----KNGRPSGEADVYFAT 102
+S+G +H + +RG+P+ E D+ FF + P +I RPSGEA V F T
Sbjct: 150 DSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTT 209
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSP--RGGVGGSG 139
+ A +AM + ++ RY+E+F++S R GGSG
Sbjct: 210 QDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAKGGGSG 248
>gi|156402343|ref|XP_001639550.1| predicted protein [Nematostella vectensis]
gi|156226679|gb|EDO47487.1| predicted protein [Nematostella vectensis]
Length = 862
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-INYKNGRPSGEAD 97
P+P W T MRGLPF+ +K I++FFSP+ PV + + K G+PSG A
Sbjct: 247 PKPTTPW----------TCKMRGLPFKAKDKHILEFFSPLKPVAIRFVMNKKGQPSGCAF 296
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
V F++ D +A+ +++ ++ RYIELF +++
Sbjct: 297 VDFSSKSDLEKALKRNKDYLQGRYIELFKDTN 328
>gi|341877456|gb|EGT33391.1| hypothetical protein CAEBREN_08325 [Caenorhabditis brenneri]
Length = 569
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI--NYKNGRPSGEADVYFATHEDAMQAMS 111
H + MRG+PFR E D+ DFF P+ P V++ +Y+ RPSG+A V F +D A+
Sbjct: 490 HFVLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 112 KDRTNIRHRYIELF 125
KD+ + RYIE+
Sbjct: 550 KDKQYMGERYIEMI 563
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 27 DRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI- 85
DR++DR AGPR G + V +RGLPF V +DI DFF+P+ V I
Sbjct: 99 DRYSDR----AGPRGGLDPI----------VRLRGLPFSVTIRDINDFFAPLPIVRDGIL 144
Query: 86 --NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+ + RP GEA V F + E A + NI HRYIE+F S
Sbjct: 145 LPDQQQARPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEAS 189
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V RGLP+ E+D+ DFF +DI +NGR G+A V F +D +A+ KDR
Sbjct: 6 QVSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDRE 65
Query: 116 NIRHRYIELF 125
++ RYIE+F
Sbjct: 66 HLGSRYIEVF 75
>gi|341879523|gb|EGT35458.1| CBN-HRPF-1 protein [Caenorhabditis brenneri]
Length = 569
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI--NYKNGRPSGEADVYFATHEDAMQAMS 111
H + MRG+PFR E D+ DFF P+ P V++ +Y+ RPSG+A V F +D A+
Sbjct: 490 HFVLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 112 KDRTNIRHRYIELF 125
KD+ + RYIE+
Sbjct: 550 KDKQYMGERYIEMI 563
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 27 DRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI- 85
DR++DR AGPR G + V +RGLPF V +DI DFF+P+ V I
Sbjct: 99 DRYSDR----AGPRGGLDPI----------VRLRGLPFSVTIRDINDFFAPLPIVRDGIL 144
Query: 86 --NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+ + RP GEA V F + E A + NI HRYIE+F S
Sbjct: 145 LPDQQRARPGGEAYVCFESMESMQIAKQRHMKNIGHRYIEVFEAS 189
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V RGLP+ E+D+ DFF +DI +NGR G+A V F +D +A+ KDR
Sbjct: 6 QVSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDRE 65
Query: 116 NIRHRYIELF 125
++ RYIE+F
Sbjct: 66 HLGSRYIEVF 75
>gi|296486434|tpg|DAA28547.1| TPA: G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 406
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 312 REEIGNRYIEIF 323
>gi|25144421|ref|NP_740878.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
gi|351061233|emb|CCD68996.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
Length = 362
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 21 RGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP 80
RG DR++DR GPR SSGP V +RGLPF V +DI DF +P+ P
Sbjct: 102 RGAPPRDRYSDR----GGPR--------SSGP-DSIVRLRGLPFSVTSRDISDFLAPL-P 147
Query: 81 VYVD----INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ D + + RP GEA V F T E A + NI HRYIE+F
Sbjct: 148 IVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ V RGLP+ E+++ DFF ++I +NGR SG+A V F ED A+ KDR
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDR 64
Query: 115 TNIRHRYIELFLNSSSP--RGGVGGSG 139
++ RYIE+F +P RG G G
Sbjct: 65 EHLGSRYIEVFPAGGAPTRRGDRGERG 91
>gi|308453513|ref|XP_003089469.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
gi|308240262|gb|EFO84214.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
Length = 264
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 49 SSGP--GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
SSGP V +RGLPF EKDI +FFS + V GRP+GEA V F T +DA
Sbjct: 66 SSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAYVEFKTQDDA 125
Query: 107 MQAMSKDRTNIRHRYIE 123
+AM DR + +RYIE
Sbjct: 126 GKAMENDRKEMSNRYIE 142
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-----KNGRPSGEADVYFATHED 105
G +H V +RG+P+ E+DI FF + P+ +I RPSGEA V FAT
Sbjct: 178 GEENHVVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQAA 237
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A AM + ++ R++ L + S
Sbjct: 238 AEAAMEYNNRHMGTRWVSLVMAS 260
>gi|356527218|ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
max]
Length = 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHT--VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYF 100
+E HT + +RGLPF ++ DI++FF P +++ +N GRPSGEA F
Sbjct: 162 DEGKDSAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPEDSIHIIMN-SEGRPSGEAYAEF 220
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A+ ED+ AM KDR + RYIELF +S
Sbjct: 221 ASAEDSKAAMVKDRMTLGSRYIELFPSS 248
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 4 ANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLP 63
A T G++ +G G +N +N P G +V++ P V +RGLP
Sbjct: 18 AKRQRTVDPGSSFYGASTG--SNFMYNPSPYG---------YVSQPPPPPFPVVRLRGLP 66
Query: 64 FRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIE 123
F E D+ +FF + V V +K G+ +GE A+ ++R N+ RY+E
Sbjct: 67 FDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVE 126
Query: 124 LF 125
+F
Sbjct: 127 VF 128
>gi|195395450|ref|XP_002056349.1| GJ10899 [Drosophila virilis]
gi|194143058|gb|EDW59461.1| GJ10899 [Drosophila virilis]
Length = 615
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 21/110 (19%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++T+HMRGLP+ E D+ FF P+ P V INY K G SG AD YF T++D+ AM +
Sbjct: 504 YYTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKR 563
Query: 113 DRTNIRHRYIELFLNSSS--------------------PRGGVGGSGFSR 142
R + RYIELF + + GG GGSGFSR
Sbjct: 564 HREQMGSRYIELFYDGKTRGGVNVGGGGGGGGAGGGPGNIGGGGGSGFSR 613
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + ++ G GH V +RGLP+ V E+ I +FF+ + + D + +
Sbjct: 139 ATPKEAKEAMRKTGGHGHAFVVKLRGLPYAVTEQQIEEFFTGL-EIKTDREGILFVMDRR 197
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GEA V F + +D QA+ ++R I HRYIE+F +S
Sbjct: 198 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIFRSS 236
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ K+I+DF V +++ + +G+ +GEA V A+ +D +A
Sbjct: 63 IRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVEVASQDDVEEAR 122
Query: 111 SKDRTNIRHRYIELFL 126
++ ++ HRYIE+F+
Sbjct: 123 KLNKASMGHRYIEVFV 138
>gi|159164096|pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAM 107
SSG HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+
Sbjct: 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVK 64
Query: 108 QAMSKDRTNIRHRYIELFLNSSSPRGG 134
QA+ +R + RYIE+F S P G
Sbjct: 65 QALKCNREYMGGRYIEVFREKSGPSSG 91
>gi|395730677|ref|XP_003775769.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Pongo abelii]
Length = 352
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 61 GLPFRVNEKDIVDFFSPVVPVYVDINYKNG---RPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ + DI + FSP P ++ + G R +G+ADV FAT E+A+ A S+DR ++
Sbjct: 238 GLPYKATKSDIYNLFSP--PNLARVHTEMGPHERVTGKADVKFATQEEAVAATSRDRVSM 295
Query: 118 RHRYIELFLN 127
HRY+ELFLN
Sbjct: 296 WHRYMELFLN 305
>gi|340386110|ref|XP_003391551.1| PREDICTED: epithelial splicing regulatory protein 1-like, partial
[Amphimedon queenslandica]
Length = 541
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQA 109
TV M+GLP+R E DI++FF P PV + + Y +G+ SG+A F++ +A
Sbjct: 267 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 326
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ K R N+ RYIE+F +S
Sbjct: 327 LKKHRNNLMGRYIEVFHSS 345
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF + DI F S ++P V IN GR +GEA V + A A+ +
Sbjct: 174 VRLRGLPFSADHNDIALFLSGLNIIPGGVVFSIN-PVGRRTGEAIVVLEGEDQAQFALQR 232
Query: 113 DRTNIRHRYIELFLNSSSP 131
DR + RY+E++ +SP
Sbjct: 233 DRHYLHQRYVEVY--EASP 249
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +D++ FF + +++ +N ++ RP+G+ V + + A +A
Sbjct: 401 VKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQS-RPTGDCFVQMTSVDAATRAA 459
Query: 111 SK-DRTNIRHRYIELF 125
++ R NI RYIE+F
Sbjct: 460 NELHRQNIGRRYIEVF 475
>gi|63991866|gb|AAY40942.1| unknown [Homo sapiens]
gi|119626039|gb|EAX05634.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Homo sapiens]
Length = 435
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 311 REEIGNRYIEIF 322
>gi|25144418|ref|NP_740877.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
gi|351061232|emb|CCD68995.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
Length = 549
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 21 RGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP 80
RG DR++DR GPR SSGP V +RGLPF V +DI DF +P+ P
Sbjct: 102 RGAPPRDRYSDR----GGPR--------SSGP-DSIVRLRGLPFSVTSRDISDFLAPL-P 147
Query: 81 VYVD----INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ D + + RP GEA V F T E A + NI HRYIE+F
Sbjct: 148 IVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI--NYKNGRPSGEADVYFATHEDAMQAMS 111
H + MRG+PFR +E D+ DFF P+ P V++ +++ RPSG+A V F +D A+
Sbjct: 470 HFVLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALM 529
Query: 112 KDRTNIRHRYIELF 125
KD+ + RYIE+
Sbjct: 530 KDKQYMGERYIEMI 543
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ V RGLP+ E+++ DFF ++I +NGR SG+A V F ED A+ KDR
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDR 64
Query: 115 TNIRHRYIELFLNSSSP--RGGVGGSG 139
++ RYIE+F +P RG G G
Sbjct: 65 EHLGSRYIEVFPAGGAPTRRGDRGERG 91
>gi|148700120|gb|EDL32067.1| mCG11326, isoform CRA_d [Mus musculus]
Length = 186
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|149043915|gb|EDL97366.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 186
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
Length = 636
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDA 106
GH V MRGLPF KD++ FF PV + + Y +GR +G+A V F+T +A
Sbjct: 320 GHIIVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANA 379
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
A++K + N+ RYIELF ++++
Sbjct: 380 TSALAKHKENLGSRYIELFRSTTA 403
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFAT 102
+SG + MRGLPF + +DI+ F + P V++ +N + GRPSG+A + +
Sbjct: 437 TSGSVRDCIRMRGLPFSASVEDIMKFLGEFAHYIRPHGVHMVLN-QQGRPSGDAFIQMIS 495
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNS 128
E A+ A + R ++ RYIE+F S
Sbjct: 496 AEKALHAAQQCHRKHMGERYIEVFQCS 522
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
H + RGLP++ ++KD+ FF + V + +N GR +GEA V F E A+
Sbjct: 220 HVIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLN-PQGRRNGEALVRFTCTEHRDLAL 278
Query: 111 SKDRTNIRHRYIELF 125
+ + ++ HRYIE++
Sbjct: 279 QRHKHHLGHRYIEVY 293
>gi|340372253|ref|XP_003384659.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Amphimedon queenslandica]
Length = 848
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQA 109
TV M+GLP+R E DI++FF P PV + + Y +G+ SG+A F++ +A
Sbjct: 307 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 366
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ K R N+ RYIE+F +S
Sbjct: 367 LKKHRNNLMGRYIEVFHSS 385
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF + DI F S ++P V IN GR +GEA V + A A+ +
Sbjct: 214 VRLRGLPFSADHNDIALFLSGLNIIPGGVVFSIN-PVGRRTGEAIVVLEGEDQAQFALQR 272
Query: 113 DRTNIRHRYIELFLNSSSP 131
DR + RY+E++ +SP
Sbjct: 273 DRHYLHQRYVEVY--EASP 289
Score = 43.5 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLPF E D+VDFF+ DI NGR +G A + F + DA QA+
Sbjct: 542 VKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQSLNDARQAVR-- 599
Query: 114 RTNIRHRYI 122
++ H+YI
Sbjct: 600 --DLNHKYI 606
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 61 GLPFRVNEKDIVDFFSPV-VPVY-VDINYK-NGRPSGEADVYFATHEDAMQAMSK-DRTN 116
GLPF N D+V+FF VP ++I Y R G A V F + DA+ A+ K DR
Sbjct: 779 GLPFSANVTDLVNFFVEFNVPASNINIVYDGTNRSVGIAFVGFQSRSDAVDAVKKLDREY 838
Query: 117 IRHRYIELFL 126
I RY++L L
Sbjct: 839 IGRRYVDLHL 848
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +D++ FF + +++ +N ++ RP+G+ V + + A +A
Sbjct: 425 VKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQS-RPTGDCFVQMTSVDAATRAA 483
Query: 111 SK-DRTNIRHRYIELF 125
++ R NI RYIE+F
Sbjct: 484 NELHRQNIGRRYIEVF 499
>gi|196011702|ref|XP_002115714.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
gi|190581490|gb|EDV21566.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
Length = 341
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 41 PGDRWVNESSGPGHH--TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEA 96
P E + P + T+ +RGLPF VNE++I +FF P + + N+K G+P+G A
Sbjct: 195 PNKESDTEDNAPAKNIITIKLRGLPFDVNEEEIKEFFHPTKLENTRLMTNHK-GKPNGVA 253
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V F EDA +AM ++ IR+RYIELF
Sbjct: 254 FVDFTNEEDACKAMKSNKDYIRNRYIELF 282
>gi|119574668|gb|EAW54283.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_d
[Homo sapiens]
Length = 149
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>gi|395521348|ref|XP_003764780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 304
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 5/78 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF N++DIV FFS ++P + + ++++ GR SGEA V FA+ E A +A+ K
Sbjct: 112 VRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFR-GRNSGEAFVQFASQEIAEKALKK 170
Query: 113 DRTNIRHRYIELFLNSSS 130
+ + HRYIE+F +S +
Sbjct: 171 HKERMGHRYIEIFKSSQA 188
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAM 107
G V +RGLP+ + D+ FFS V I + GRPSGEA V + E+
Sbjct: 8 GSFVVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVE 67
Query: 108 QAMSKDRTNIRHRYIELF 125
A+ K R + HRY+E+F
Sbjct: 68 LALKKHRETMAHRYVEVF 85
>gi|268565477|ref|XP_002639457.1| C. briggsae CBR-HRPF-1 protein [Caenorhabditis briggsae]
Length = 556
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V RGLP+ E+D+ DFF +DI +NGR SG+A V F +D QA+ KDR
Sbjct: 6 QVQCRGLPWEATEQDLRDFFGNNGIASLDIPIRNGRTSGDATVTFTNEDDYRQALKKDRE 65
Query: 116 NIRHRYIELFLNSSSPR 132
++ RYIE+F PR
Sbjct: 66 HLGSRYIEVFPMDEPPR 82
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI--NYKNGRPSGEADVYFATHEDAMQAMS 111
H + MRG+PFR E D+ +FF P+ P V++ + + RPSG+A V F + +D A+
Sbjct: 477 HFVLRMRGVPFRATETDVYEFFHPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALM 536
Query: 112 KDRTNIRHRYIELF 125
KD+ + RYIE+
Sbjct: 537 KDKQYMGERYIEMI 550
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 27 DRWNDRPGGFAGPRP--GDRWVNESSGPGHH-TVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
DR + RP G PR DR + +GP V +RGLPF V +DI DF +P+ P+
Sbjct: 86 DRNDFRPRGGGPPRDRFSDRGSGQRTGPSTDPIVRLRGLPFSVTIRDINDFLAPL-PIVR 144
Query: 84 D----INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
D + + R +GEA V F + E A + NI HRYIE+F
Sbjct: 145 DGILLPDQQRARIAGEAYVVFDSLESVQIAKQRHMKNIGHRYIEVF 190
>gi|224059562|ref|XP_002299908.1| predicted protein [Populus trichocarpa]
gi|222847166|gb|EEE84713.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYF 100
+E HT + +RGLPF + DI++FF V +++ +N GRP+GEA V F
Sbjct: 155 DEGKDLAEHTGVLRLRGLPFSAGKDDIMEFFKDFVLSEDLIHITMN-SEGRPTGEAFVEF 213
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A ED+ AM+KDR + RYIELF +S
Sbjct: 214 ANAEDSKAAMAKDRMTLGSRYIELFPSS 241
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF E D+ +FF + V V +K G+ +GEA A+
Sbjct: 49 PPFPVVRLRGLPFDCTETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQ 108
Query: 112 KDRTNIRHRYIELF 125
K+R N+ RY+E+F
Sbjct: 109 KNRQNMGRRYVEVF 122
>gi|145359708|ref|NP_201402.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010757|gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 255
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSG 94
GP R+ + + MRGLP+ VN+ I++FFS V+ V + + +G+ +G
Sbjct: 149 GPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATG 208
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F T E+A +AM+KD+ +I RY+ELF
Sbjct: 209 EAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G V +RGLPF + DI +FF+ + V V + KNG+ SGEA V FA A+ +
Sbjct: 47 GFPVVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQR 106
Query: 113 DRTNIRHRYIELFLNSSS 130
DR N+ RY+E+F S
Sbjct: 107 DRHNMGRRYVEVFRCSKQ 124
>gi|449448717|ref|XP_004142112.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
gi|449502606|ref|XP_004161690.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 260
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 26 NDRWNDRPGGFAGPRPGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFS----PVV 79
N+ ++ R G P + +E HT + +RGLP+ + DI+DFF
Sbjct: 141 NEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSED 200
Query: 80 PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+++ +N GRPSGEA V F+ +D+ AMSKDR + RYIELF +S
Sbjct: 201 SIHLTLN-SEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 248
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
+VN+ P V +RGLPF E D+V+FF + V + +KNG+ +GE
Sbjct: 50 YVNQP--PPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPL 107
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
A+ ++R N+ RY+E+F
Sbjct: 108 QVDFALQRNRQNMGRRYVEIF 128
>gi|10177116|dbj|BAB10406.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSG 94
GP R+ + + MRGLP+ VN+ I++FFS V+ V + + +G+ +G
Sbjct: 142 GPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATG 201
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F T E+A +AM+KD+ +I RY+ELF
Sbjct: 202 EAFVEFETGEEARRAMAKDKMSIGSRYVELF 232
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G V +RGLPF + DI +FF+ + V V + KNG+ SGEA V FA A+ +
Sbjct: 40 GFPVVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQR 99
Query: 113 DRTNIRHRYIELFLNSSS 130
DR N+ RY+E+F S
Sbjct: 100 DRHNMGRRYVEVFRCSKQ 117
>gi|334188661|ref|NP_001190629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010758|gb|AED98141.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 158
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSG 94
GP R+ + + MRGLP+ VN+ I++FFS V+ V + + +G+ +G
Sbjct: 52 GPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATG 111
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F T E+A +AM+KD+ +I RY+ELF
Sbjct: 112 EAFVEFETGEEARRAMAKDKMSIGSRYVELF 142
>gi|388504640|gb|AFK40386.1| unknown [Medicago truncatula]
Length = 259
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 41 PGDRWVNESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSG 94
P + +E HT + +RGLPF N+ DI+DFF V +++ +N GRP G
Sbjct: 155 PRAKPYDEGKDSAEHTGVLRLRGLPFFANKDDIMDFFKEYVLSEDSIHIVMN-SEGRPFG 213
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F +D+ AM+KDR + RYIELF
Sbjct: 214 EAYVEFENADDSKAAMAKDRMTLGSRYIELF 244
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
+V++ P V +RGLPF E D+ +FF + V V +K G+ SGE
Sbjct: 47 YVSQPPPPPFPVVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPL 106
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
A+ ++R NI RY+E+F
Sbjct: 107 QVDFALQRNRQNIGRRYVEVF 127
>gi|224002324|ref|XP_002290834.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 53 GHHT--VHMRGLPFRVNEKDIVDFFSPVVPVY--VDINYK-NGRPSGEADVYFATHEDAM 107
G HT V +RGLPF+ +++DI+DFF P+ V + Y+ +GR +GE V F +DA
Sbjct: 293 GTHTGYVRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAK 352
Query: 108 QAMSKDRTNIRHRYIELFLN 127
+AM+ R+ I RYIELF++
Sbjct: 353 EAMALHRSTIGSRYIELFIS 372
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF +D++ FF +V +D+ SGEA V FA D + +D
Sbjct: 93 CVRVRGLPFEATLEDVLVFFQGLV--VIDVVLVPHAESGEAFVVFANPMDFQMGLQRDHQ 150
Query: 116 NIRHRYIELF 125
++ RY+E+F
Sbjct: 151 SMGRRYLEVF 160
>gi|402911169|ref|XP_003918213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Papio anubis]
Length = 256
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 11/96 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
EA V FA+ E A +A+ K + I HRYIE+F +S +
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|356559210|ref|XP_003547893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Glycine
max]
Length = 264
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
ND G P R+ ++ + MRGLPF+V + IV+FF ++ V I
Sbjct: 150 NDYQGSSPPPSRSKRFNDKDQMECTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 209
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ +G+ +GEA V F + E+A +AMSKD+ I RY+ELF
Sbjct: 210 RPDGKSTGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 248
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI+ FF+ + V V + K+GR SGEA V FA A+
Sbjct: 54 PPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQ 113
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 114 RDRQNMGRRYVEVF 127
>gi|255071701|ref|XP_002499525.1| predicted protein [Micromonas sp. RCC299]
gi|226514787|gb|ACO60783.1| predicted protein [Micromonas sp. RCC299]
Length = 251
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 52 PGHHT--VHMRGLPFRVNEKDIVDFFS-PVVPVYVDINYK--------NGRPSGEADVYF 100
P HT + MRGLPF + DI+ F+ P + V + + +GRPSG A V F
Sbjct: 152 PQEHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHIVTSLDGRPSGMAFVEF 211
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A+ EDA AMS+DR + RY+ELF +S
Sbjct: 212 ASAEDAKAAMSRDRCTMGSRYVELFPSS 239
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF E DI++FF + PV V I ++GR +GEA V FA A+ K+R
Sbjct: 20 VVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRRDGRATGEAYVLFANPMQMDFALQKNRG 79
Query: 116 NIRHRYIELF 125
+ RYIE+F
Sbjct: 80 PMGRRYIEVF 89
>gi|380792639|gb|AFE68195.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 269
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 11/96 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
EA V FA+ E A +A+ K + I HRYIE+F +S +
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 189
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS P I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|358248784|ref|NP_001239939.1| uncharacterized protein LOC100805177 [Glycine max]
gi|255644706|gb|ACU22855.1| unknown [Glycine max]
Length = 261
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHT--VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYF 100
+E HT + +RGLPF ++ DI++FF P +++ +N GRPSGEA F
Sbjct: 163 DEGKESAEHTGVLRLRGLPFSASKDDIMEFFKDFGLPEDSIHIIMN-SEGRPSGEAYAEF 221
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+ ED+ AM KDR + RYIELF +S
Sbjct: 222 ESAEDSKAAMIKDRMTLGSRYIELFPSS 249
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF E D+ +FF + V V +K G+ +GE A+ ++R
Sbjct: 60 VVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQ 119
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 120 NMGRRYVEVF 129
>gi|308498127|ref|XP_003111250.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
gi|308240798|gb|EFO84750.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
Length = 558
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNG-RPSGEADVYFATHEDAMQAMSK 112
H + MRG+PFR E+D+ DFF P+ P V++ N R SG+A V F + +D +A+ K
Sbjct: 480 HFVLRMRGVPFRATEEDVYDFFRPIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMK 539
Query: 113 DRTNIRHRYIELF 125
D+ + RYIE+
Sbjct: 540 DKQYMGERYIEMI 552
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V RGLP+ E+D+ FF VDI +NGR SG+A V F+ +D A+ KDR
Sbjct: 6 QVQCRGLPWEATEEDLRGFFGGNGIESVDIPKRNGRTSGDATVTFSNEDDYKLALKKDRE 65
Query: 116 NIRHRYIELF-LNSS 129
++ RYIE+F +NS+
Sbjct: 66 HLGSRYIEVFPMNSA 80
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 27 DRWNDR-----PGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV 81
DR++DR GG GP P + +RGLPF V +DI DF P+ V
Sbjct: 100 DRYSDRGEQHRSGGTGGPDP--------------IIRLRGLPFSVTARDINDFLQPLGIV 145
Query: 82 YVDI---NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I + + RPSGEA + F E A + NI HRYIE+F
Sbjct: 146 RDGILLPDQQRARPSGEAYIVFDMLESVQIAKQRHMKNIGHRYIEVF 192
>gi|123704039|ref|NP_001074045.1| epithelial splicing regulatory protein 1 [Danio rerio]
gi|143360736|sp|A1L1G1.1|ESRP1_DANRE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|120537378|gb|AAI29045.1| RNA binding motif protein 35A [Danio rerio]
Length = 714
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF + ++ FFSP PV + + + +GRP+G+A V F+ E A A+
Sbjct: 328 VRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 KKHKDMLGKRYIELFKSTAA 407
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +DI+ F V++ +N++ GRPSGEA + + E A A
Sbjct: 452 VRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQ-GRPSGEAFIQMRSAERAFLAA 510
Query: 111 SK-DRTNIRHRYIELFLNSS 129
+ + +++ RY+E+F S+
Sbjct: 511 QRCHKRSMKERYVEVFACSA 530
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 18 GGGR--GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF 75
GGGR G + D+ G AG D+ + P HTV +RG PF V EK++ +F
Sbjct: 249 GGGRAAGPEQDAPSRDKRPGAAGAEV-DKPATQKEPPTPHTVRLRGAPFNVTEKNVTEFL 307
Query: 76 SPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
+P+ PV + I +G +G V F++ E+ QA+ +R + RYIE+F ++P
Sbjct: 308 APLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCNREYMGGRYIEVFREKNAP 364
>gi|326927219|ref|XP_003209790.1| PREDICTED: epithelial splicing regulatory protein 2-like [Meleagris
gallopavo]
Length = 701
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ DI+DF + + P V++ +N + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
+ A M A + ++ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFVNSEQRDLALER 286
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 287 HKHHMGSRYIEVY 299
>gi|71895579|ref|NP_001025737.1| epithelial splicing regulatory protein 2 [Gallus gallus]
gi|75571416|sp|Q5ZLR4.1|ESRP2_CHICK RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|53128733|emb|CAG31329.1| hypothetical protein RCJMB04_5c3 [Gallus gallus]
Length = 701
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ DI+DF + + P V++ +N + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
+ A M A + ++ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFVNSEQRDLALER 286
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 287 HKHHMGSRYIEVY 299
>gi|134047877|sp|Q7ZVR8.2|ESRP2_DANRE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
Length = 736
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFAT 102
++G + +RGLP+ +DI++F + P V++ +N + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 103 HEDA-MQAMSKDRTNIRHRYIELFLNSS 129
+ A M A + ++ RY+E+F S+
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCST 530
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFINSEHRDMALDR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 285 HKHHMGSRYIEVY 297
>gi|40548306|ref|NP_954966.1| epithelial splicing regulatory protein 2 [Danio rerio]
gi|28279592|gb|AAH45439.1| RNA binding motif protein 35B [Danio rerio]
Length = 736
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFAT 102
++G + +RGLP+ +DI++F + P V++ +N + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 103 HEDA-MQAMSKDRTNIRHRYIELFLNSS 129
+ A M A + ++ RY+E+F S+
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCST 530
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFINSEHRDMALDR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 285 HKHHMGSRYIEVY 297
>gi|449277356|gb|EMC85572.1| Epithelial splicing regulatory protein 2 [Columba livia]
Length = 721
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 344 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 403
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 404 KKHKEILGKRYIELFRSTAA 423
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ DI++F V++ +N + GRPSG+A + +
Sbjct: 456 ATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLN-QQGRPSGDAFIQMKS 514
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
+ A M A + ++ RY+E+F
Sbjct: 515 ADKAFMVAQKCHKKMMKDRYVEVF 538
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 243 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFVNSEQRDLALER 301
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 302 HKHHMGSRYIEVY 314
>gi|83267764|gb|ABB99419.1| G-rich RNA sequence-binding factor 1 [Cervus elaphus]
Length = 45
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ +GEADV+F THEDA+ AM KDR+++ HRYIELFLN S P+G
Sbjct: 3 KATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLN-SCPKG 44
>gi|327276493|ref|XP_003223004.1| PREDICTED: epithelial splicing regulatory protein 2-like [Anolis
carolinensis]
Length = 714
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 332 IRMRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNAL 391
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 392 KKHKEILGKRYIELFRSTAA 411
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 231 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFVNSEQRDLALER 289
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 290 HKHHMGSRYIEVY 302
>gi|325303152|tpg|DAA34329.1| TPA_inf: splicing factor hnRNP-F [Amblyomma variegatum]
Length = 231
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 36 FAGPRPGDRWVNESSGPGHH------TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDI 85
F R WV + SG V +RGLPF ++++I FFS +VP + +
Sbjct: 87 FKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPT 146
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+Y+ GR +GEA V FAT + A +AM K + I HRYIE+F +S
Sbjct: 147 DYQ-GRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSS 188
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ +RGLP+ +++I++FF+ + V++ ++ + GRPSGEA + + +D
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVHMTLS-REGRPSGEAYIELESEQDME 69
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+ + +I HRYIE+F + S
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRS 92
>gi|41351452|gb|AAH65688.1| Rbm35b protein [Danio rerio]
Length = 711
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFAT 102
++G + +RGLP+ +DI++F + P V++ +N + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 103 HEDA-MQAMSKDRTNIRHRYIELFLNSS 129
+ A M A + ++ RY+E+F S+
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCST 530
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFINSEHRDMALDR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 285 HKHHMGSRYIEVY 297
>gi|255645750|gb|ACU23368.1| unknown [Glycine max]
Length = 260
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 47 NESSGPGHHT--VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYF 100
+E HT + +RGLPF ++ DI++FF P +++ +N GRP GEA F
Sbjct: 162 DEGKDSAEHTGVLRLRGLPFFASKDDIMEFFKDFGLPEDSIHIIMN-SEGRPFGEAYAEF 220
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELFLNS 128
A+ ED+ AM KDR + RYIELF +S
Sbjct: 221 ASAEDSKAAMVKDRMTLGSRYIELFPSS 248
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 4 ANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLP 63
A T G++ +G G +N +N P G +V++ P V +RGLP
Sbjct: 18 AKRQRTVDPGSSFYGASTG--SNFMYNPSPYG---------YVSQPPPPPFPVVRLRGLP 66
Query: 64 FRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIE 123
F E D+ +FF + V V +K G+ +GE A+ +R N+ RY+E
Sbjct: 67 FDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQGNRQNMGRRYVE 126
Query: 124 LF 125
+F
Sbjct: 127 VF 128
>gi|198421641|ref|XP_002120551.1| PREDICTED: similar to RNA-binding protein 35B (RNA-binding motif
protein 35B) [Ciona intestinalis]
Length = 772
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATH 103
S G V MRGLPF +DIV+FF +PV + + + +GRP+G+A V F +
Sbjct: 349 SKEGEAIVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGVLLVKFADGRPTGDAFVLFTSE 408
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNSSS 130
+ A+ A++K + + RY+E+F ++++
Sbjct: 409 KFAVAALNKHKLTLGKRYVEIFKSTAA 435
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFATH 103
+G + + +RG+P+ +DI F + ++P +++ +N + GRPSG+A + ++
Sbjct: 468 AGAIRNCIRLRGMPYSATVEDITSFLGELANSILPHGIHMVLN-QQGRPSGDAFIQLSSV 526
Query: 104 EDAMQA---MSKDRTNIRH---RYIELF 125
E QA +SK + RH RY+E+F
Sbjct: 527 EKCSQAALDVSKGGCHKRHMGERYVEVF 554
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-------SPVVPVYVDINYKNGR 91
P P + + G G V M+G+P+ DI+ FF + +Y D R
Sbjct: 681 PIPANHPITGVPGNGVQ-VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYND----KLR 735
Query: 92 PSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELFL 126
P+GEA V F + E++ +A + +R + +RYIEL L
Sbjct: 736 PTGEALVTFPSLEESHRAVVENNRKLMGNRYIELLL 771
>gi|168015582|ref|XP_001760329.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688343|gb|EDQ74720.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 34 GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKN 89
GG G D + S + V +RGLPF +E DI DFF + V + +N++
Sbjct: 5 GGLVGGSALDDELKRS-----NVVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQ- 58
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GR +G+A V FAT E A +A+ ++R +I RYIE+F
Sbjct: 59 GRSTGQAYVQFATAELANKALERNRQHIGSRYIEVF 94
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
H + MRGLP+ +++I+DFF ++P + I RP+GEA V F + ++A +AM
Sbjct: 290 HVCIKMRGLPYNAGQREIMDFFEGYNILPNGIHIVMGATDRPTGEAFVEFISSDEAQRAM 349
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ R NI RYIELF + S
Sbjct: 350 ERHRQNIGSRYIELFRATKS 369
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATHEDAMQAMSK 112
V MRG+P+ DI FF + V I + +GRP+GEA V FA E A +AM
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQL 204
Query: 113 DRTNIRHRYIELF 125
R + RY+ELF
Sbjct: 205 HREPMGSRYVELF 217
>gi|297797787|ref|XP_002866778.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312613|gb|EFH43037.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 255
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
P R+ + + MRGLP+ VN+ I++FFS V+ V + + +G+ +GE
Sbjct: 150 PSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIEGRVQVVCRPDGKATGE 209
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V F T E+A +AM+KD+ +I RY+ELF
Sbjct: 210 AFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G V +RGLPF + DI FFS + V V + KNG+ SGEA V FA ++ +
Sbjct: 47 GFPVVRLRGLPFNCADIDIFKFFSGLDIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQR 106
Query: 113 DRTNIRHRYIELFLNSSS 130
DR N+ RY+E+F S
Sbjct: 107 DRHNMGRRYVEVFRCSKQ 124
>gi|159163318|pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLPF ++++IV FFS +VP + + ++++ GR +GEA V FA+ E A +A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTGEAFVQFASQEIAEKALKK 76
Query: 113 DRTNIRHRYIELFLNS 128
+ I HRYIE+F +S
Sbjct: 77 HKERIGHRYIEIFKSS 92
>gi|118362902|ref|XP_001014867.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila]
gi|89296443|gb|EAR94431.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila
SB210]
Length = 967
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ ++DI FF S +V + Y RPSGEA + FAT +DA +A+ KD+
Sbjct: 470 VKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVYDGKRPSGEAFIIFATKQDAQKAIEKDK 529
Query: 115 TNIRHRYIELFLN 127
+ RYIE+FL+
Sbjct: 530 EKMGSRYIEIFLS 542
Score = 35.0 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINY-KNGRPSGEADVYFATHEDAM 107
+G H+ + +RG+P+ E ++ DF + Y + Y KN + +GE + +
Sbjct: 160 NGGSHYFLKLRGIPYNAKESEVQDFLGLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFD 219
Query: 108 QAMSKDRTNIRHRYIELFL 126
+ S + +++RYIE+F+
Sbjct: 220 KIKSMHKKTMKNRYIEIFV 238
>gi|298710505|emb|CBJ25569.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 670
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V MRGLP+ NE DI +FF + ++V +N ++GRPSGEA V F T E A +A+
Sbjct: 142 VVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLN-RDGRPSGEAYVVFETEEAAKEALK 200
Query: 112 KDRTNIRHRYIELF 125
+D+ I R+I++F
Sbjct: 201 RDKDKIGERWIDIF 214
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
H VH+RGLP+ + K++VDFF+P+ DI+ + GEA V D A+ KDR
Sbjct: 46 HAVHLRGLPWNASTKELVDFFAPMDVEDGDIHLVHN-SRGEAYVKLKNESDLETALKKDR 104
Query: 115 TNIRHRYIELFLNS 128
I RYIE+F +S
Sbjct: 105 NTIGRRYIEVFRSS 118
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLPF V E +I FF + + I RP+GE V FAT +D AMS++R
Sbjct: 455 CVKLRGLPFNVTENNIFSFFEGLTVIGSFICKDVMARPTGEGFVEFATVDDCQLAMSRNR 514
Query: 115 TNIRHRYIELFLNSSS 130
++ RY+E+F S
Sbjct: 515 ESMMDRYVEVFATSKE 530
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV----VPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V MRGLPF + I FF + +++ + +G+ SGEA V F+T +A +A+
Sbjct: 249 VVRMRGLPFEATKSQIRAFFDGINVKESNIFI-VTRPDGKASGEAFVLFSTEAEAEKALL 307
Query: 112 KDRTNIRHRYIELFLNSSSP---RGGVG 136
KD+ + R+I+LF + R GVG
Sbjct: 308 KDKEKLGDRWIDLFATNKGALYQRVGVG 335
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM- 110
+ MRGLPF ++I FF V+V +N + RP+GE+ V F + ++A +A
Sbjct: 349 VLRMRGLPFASGVEEIRTFFRGYKVQEHGVFV-VNGGDWRPTGESYVLFDSEDEAERAFK 407
Query: 111 SKDRTNIRHRYIELF 125
+ D+ I R+IELF
Sbjct: 408 ALDKQKIGDRWIELF 422
>gi|294461682|gb|ADE76400.1| unknown [Picea sitchensis]
Length = 265
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDR------WVNESSGPGH--HT--VHMRGLPFRVNEKDIV 72
C D +N P+ GD + SS H HT + +RGLPF V+ +DIV
Sbjct: 134 CKKQDYYNAVAAEVNEPKAGDDAAPPSGYSKGSSEKDHMEHTGFLKLRGLPFSVSRRDIV 193
Query: 73 DFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+FF V++ + + +GR +GEA V F++ D+ AMSKD+ I RY+ELF
Sbjct: 194 EFFKDYQLKEKNVHI-VTHSDGRATGEAFVEFSSAADSKDAMSKDKMTIGTRYVELF 249
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF +E DI +FF+ + V + +K GR SGE V F + A+ +DR
Sbjct: 63 VVRLRGLPFNCSESDICEFFAGLDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQRDRQ 122
Query: 116 NIRHRYIELF 125
N+ RYIE+F
Sbjct: 123 NMGRRYIEVF 132
>gi|324506224|gb|ADY42662.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 416
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V MRGLP+ V DI +FF P+ V + + Y ++ R SG+ V F+T +A A+S+++
Sbjct: 273 VFMRGLPYNVTALDIEEFFKPLNCVEIKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKN 332
Query: 116 NIRHRYIELFLNSSSP 131
NI RYIELF ++ P
Sbjct: 333 NIGSRYIELFPGTNIP 348
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHE 104
+ES ++ V +RGLP+ N DI +FF V V +D + GRPSGEA V A+ E
Sbjct: 99 SESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVADVVIDKE-QGGRPSGEAFVRLASKE 157
Query: 105 DAMQAMSKDRTNIRHRYIELFLNS 128
A A+ + + N+ RY+E+F +S
Sbjct: 158 HAELALERSKNNMGSRYVEVFRSS 181
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
P + + +RGLPF E D+ +F + + +GR SGE V + +A+
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 111 SKDRTNIRHRYIELF 125
DR I RYIE+F
Sbjct: 63 KLDRNEINGRYIEVF 77
>gi|442755167|gb|JAA69743.1| Putative splicing factor hnrnp-f [Ixodes ricinus]
Length = 279
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNRITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
A V FA+ E A +A+ K + I HRYIE+F +S G
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEKVG 192
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +D+ +F S + ++ I + GR SGEA V + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHF-IYTREGRQSGEAFVELESEDDVKMA 70
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR + HRYIE+F
Sbjct: 71 LKKDRERMGHRYIEVF 86
>gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]
Length = 572
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKN-GRPSGEADVYFAT 102
V ESS P V MRGLP+ EKDI+ FFS V V ++Y + GR SG+A V F T
Sbjct: 211 VPESSTP-QGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFET 269
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNS 128
+A A+ D+ I R+I+LFL+S
Sbjct: 270 VPEAQHALKLDKEKIGERWIDLFLSS 295
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQA-MS 111
+ MRGLPF+ D+ +F V P V I +GRP+GEA V F T EDA+ A +
Sbjct: 387 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 446
Query: 112 KDRTNIRHRYIELFLNS 128
++ + +R+I+L+L S
Sbjct: 447 LNKQTMNNRWIDLYLAS 463
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 59 MRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+RG+P V E+++ FF+ V+ +Y+ +GR +GEA F + +D QAMS++R
Sbjct: 497 LRGVPSTVTEEELFRFFAGLQVIGLYI-CRDSSGRATGEAYAEFGSLDDCQQAMSRNR 553
>gi|168037998|ref|XP_001771489.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677216|gb|EDQ63689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
H + MRGLP+ +++I+DFF +P + I RP+GEA V F + ++A +AM
Sbjct: 290 HVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRAM 349
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ R NI RYIELF + S
Sbjct: 350 ERHRQNIGSRYIELFRATKS 369
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 34 GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKN 89
GG G D + S + V +RGLPF E DI DFF + V + +N++
Sbjct: 5 GGLVGGSALDDELKRS-----NVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQ- 58
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GR +G+A V FA+ E A +A+ ++R +I RYIE+F
Sbjct: 59 GRSTGQAYVQFASAELANKALERNRQHIGSRYIEVF 94
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATHEDAMQAMSK 112
V MRG+P+ DI FF + V I + +GRP+GEA V F E A +AM
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQL 204
Query: 113 DRTNIRHRYIELF 125
R + RY+ELF
Sbjct: 205 HREPMGSRYVELF 217
>gi|298713992|emb|CBJ27224.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 525
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VPV--YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ MRGLP+R ++ +++ FF +P + +GR +GEA V FAT EDA + K
Sbjct: 438 VIRMRGLPYRASKSEVMCFFKGCSIPEEGVAFVTRADGRVTGEAYVRFATREDAKMGLRK 497
Query: 113 DRTNIRHRYIELFLNS 128
DR I RYIELF +S
Sbjct: 498 DREMIGSRYIELFTSS 513
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGL + KDI+DFF + PV + + A F T D A+ +
Sbjct: 287 CVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQRYS 346
Query: 115 TNIRHRYIEL 124
I+ RYIE+
Sbjct: 347 LQIKGRYIEV 356
>gi|356531343|ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
ND G P R+ ++ + MRGLPF+V + IV+FF ++ V I
Sbjct: 143 NDYHGSSPPPSRLKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 202
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ +G+ +GEA V F + E+A +AMSKD+ I RY+ELF
Sbjct: 203 RPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 241
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI+ FF+ + V V + K+GR SGEA V FA A+
Sbjct: 47 PPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQ 106
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 107 RDRQNMGRRYVEVF 120
>gi|294461466|gb|ADE76294.1| unknown [Picea sitchensis]
Length = 262
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 15/117 (12%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDR------WVNESSGPGH--HT--VHMRGLPFRVNEKDIV 72
C D +N P+ GD + SS H HT + +RGLPF V+++DI+
Sbjct: 131 CKKQDYYNAIAAEVNEPKGGDDAAPPSGYSKGSSDKDHMEHTGILKLRGLPFSVSKRDII 190
Query: 73 DFFSPV----VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+FF+ V++ +++ +GR +GEA V F+ D+ AMSKD+ I RY+ELF
Sbjct: 191 EFFTDYDLSETNVHI-VSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGTRYVELF 246
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF ++ D+ +FF+ + V V + +K GR SGE V F A+ +DR
Sbjct: 60 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 119
Query: 116 NIRHRYIELF 125
N+ RYIE+F
Sbjct: 120 NMGRRYIEVF 129
>gi|356531341|ref|XP_003534236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Glycine max]
Length = 264
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
ND G P R+ ++ + MRGLPF+V + IV+FF ++ V I
Sbjct: 150 NDYHGSSPPPSRLKRFNDKDQMEYTEILKMRGLPFQVTKSQIVEFFKDFKLIEDRVHIAC 209
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ +G+ +GEA V F + E+A +AMSKD+ I RY+ELF
Sbjct: 210 RPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELF 248
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI+ FF+ + V V + K+GR SGEA V FA A+
Sbjct: 54 PPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQ 113
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 114 RDRQNMGRRYVEVF 127
>gi|294460097|gb|ADE75631.1| unknown [Picea sitchensis]
Length = 256
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 15/117 (12%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDR------WVNESSGPGH--HT--VHMRGLPFRVNEKDIV 72
C D +N P+ GD + SS H HT + +RGLPF V+++DI+
Sbjct: 125 CKKQDYYNAIAAEVNEPKGGDDAAPPSGYSKGSSDKDHMEHTGILKLRGLPFSVSKRDII 184
Query: 73 DFFSPV----VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+FF+ V++ +++ +GR +GEA V F+ D+ AMSKD+ I RY+ELF
Sbjct: 185 EFFTDYDLSETNVHI-VSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGTRYVELF 240
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF ++ D+ +FF+ + V V + +K GR SGE V F A+ +DR
Sbjct: 54 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 113
Query: 116 NIRHRYIELF 125
N+ RYIE+F
Sbjct: 114 NMGRRYIEVF 123
>gi|397500915|ref|XP_003821148.1| PREDICTED: epithelial splicing regulatory protein 1-like [Pan
paniscus]
Length = 422
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATH 103
S V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA
Sbjct: 320 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACE 379
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVG 136
E A A+ K + + RYIELF ++++ VG
Sbjct: 380 EYAQNALRKHKDLLGKRYIELFRSTAAEVQQVG 412
>gi|302794117|ref|XP_002978823.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
gi|300153632|gb|EFJ20270.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
Length = 478
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 48 ESSGPGHH-------TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEA 96
+S GPG + MRGLP+ ++I +FF +VP +YV I + RP+GEA
Sbjct: 265 QSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATD-RPTGEA 323
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR-GGVGGSGFSRSEL 145
V F + ++A +AM + R NI RYIELF + S GG FS +L
Sbjct: 324 FVEFISSKEAQRAMERHRNNIGSRYIELFRATKSEMIVATGGLPFSMGQL 373
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ V +RGLPF E DI +FF + + + +N++ GR +G+A V FAT E A +++
Sbjct: 21 NVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQ-GRSTGQAYVQFATAELANKSL 79
Query: 111 SKDRTNIRHRYIELF 125
++R +I RYIE+F
Sbjct: 80 ERNRQHIGSRYIEVF 94
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSK 112
V MRG+P+ DI+ FF V P + + + +GRP+GEA V F E A +AM
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQL 199
Query: 113 DRTNIRHRYIELF 125
R + RY+ELF
Sbjct: 200 HREPMGSRYVELF 212
>gi|302805965|ref|XP_002984733.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
gi|300147715|gb|EFJ14378.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
Length = 483
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 48 ESSGPGHH-------TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEA 96
+S GPG + MRGLP+ ++I +FF +VP +YV I + RP+GEA
Sbjct: 265 QSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATD-RPTGEA 323
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR-GGVGGSGFSRSEL 145
V F + ++A +AM + R NI RYIELF + S GG FS +L
Sbjct: 324 FVEFISSKEAQRAMERHRNNIGSRYIELFRATKSEMIVATGGLPFSMGQL 373
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ V +RGLPF E DI +FF + + + +N++ GR +G+A V FAT E A +++
Sbjct: 21 NVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQ-GRSTGQAYVQFATAELANKSL 79
Query: 111 SKDRTNIRHRYIELF 125
++R +I RYIE+F
Sbjct: 80 ERNRQHIGSRYIEVF 94
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSK 112
V MRG+P+ DI+ FF V P + + + +GRP+GEA V F E A +AM
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQL 199
Query: 113 DRTNIRHRYIELF 125
R + RY+ELF
Sbjct: 200 HREPMGSRYVELF 212
>gi|297830788|ref|XP_002883276.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
gi|297329116|gb|EFH59535.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
T+ +RGLPF ++DI+DFF V+V +N GRP+GEA V F E++ AM
Sbjct: 269 TLRLRGLPFSAGKEDILDFFKDFELSEDSVHVTVN-GEGRPTGEAFVEFRNAEESRAAMV 327
Query: 112 KDRTNIRHRYIELFLNS 128
KDR + RYIELF +S
Sbjct: 328 KDRKTLGSRYIELFPSS 344
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 33 PGGFAGPRPGDRWVNESSGPGHHTV-------HMRGLPFRVNEKDIVDFFSPVVPVYVDI 85
PG F GP PG ++ G +RGLPF E D+V+FF + V V
Sbjct: 92 PGPFYGPHPGSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAEIDVVEFFHGLDVVDVLF 151
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+KN + +GEA A+ K+R N+ RY+E+F
Sbjct: 152 VHKNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVF 191
>gi|71998567|ref|NP_495960.2| Protein SYM-2 [Caenorhabditis elegans]
gi|74966269|sp|Q22708.3|SYM2_CAEEL RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
gi|29165341|gb|AAO65265.1| putative RNA binding protein SYM-2 [Caenorhabditis elegans]
gi|33300449|emb|CAA93887.2| Protein SYM-2 [Caenorhabditis elegans]
Length = 618
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ + I FF P+ + I +GRP+G+A V F T EDA Q + K R
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHR 342
Query: 115 TNIRHRYIELFLNSSS 130
I RYIELF ++++
Sbjct: 343 QVIGQRYIELFKSTAA 358
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ ++ + FF+ +VP + + + GR +GE V F++ E A+ + R
Sbjct: 186 RGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKRHRNF 245
Query: 117 IRHRYIELF 125
+ RYIE++
Sbjct: 246 LLSRYIEVY 254
>gi|334185502|ref|NP_188725.3| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332642915|gb|AEE76436.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 292
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ +RGLPF ++DI+DFF V+V +N GRP+GEA V F ED+ AM
Sbjct: 205 ILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVN-GEGRPTGEAFVEFRNAEDSRAAMV 263
Query: 112 KDRTNIRHRYIELFLNS 128
KDR + RYIELF +S
Sbjct: 264 KDRKTLGSRYIELFPSS 280
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 33 PGGFAGPRPGDRWVNESSGPGHHTV-------HMRGLPFRVNEKDIVDFFSPVVPVYVDI 85
PG F GP P ++ G +RGLPF E D+V+FF + V V
Sbjct: 28 PGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLF 87
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
++N + +GEA A+ K+R N+ RY+E+F ++
Sbjct: 88 VHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQ 132
>gi|303278009|ref|XP_003058298.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460955|gb|EEH58249.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 230
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFF-------SPVVPVYVDINYK-NGRPSGEADVYFATHEDAM 107
+ +RGLPF + DI+ FF SP+V + I +GRPSG A V F + EDA
Sbjct: 138 VLKLRGLPFSATKDDIITFFDDKSLGVSPLVHDSIHIVLSVDGRPSGVAFVEFVSAEDAK 197
Query: 108 QAMSKDRTNIRHRYIELFLNS 128
AM KDR+++ RY+ELF +S
Sbjct: 198 TAMIKDRSSMGTRYVELFPSS 218
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF +E D+ +FF + PV V I ++GR +GEA V A A+ K+R
Sbjct: 26 VVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRRDGRATGEAYVVLANQMLMEVALQKNRG 85
Query: 116 NIRHRYIELF 125
+ RYIE+F
Sbjct: 86 PMGRRYIEVF 95
>gi|159164103|pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQA 109
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A
Sbjct: 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K + + RYIELF ++++
Sbjct: 85 LRKHKDLLGKRYIELFRSTAA 105
>gi|395833986|ref|XP_003789998.1| PREDICTED: probable RNA-binding protein 19 [Otolemur garnettii]
Length = 959
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 27 DRWNDRPGGFAGPRPGDRWVN----ESSGPGH-------HTVHMRGLPFRVNEKDIVDFF 75
DR + PG G G++ E+ P + HTV +RG PF V EK++++F
Sbjct: 255 DRESRGPGQAQGGPSGNKRAQVARAEAEKPANQKEPTTPHTVKLRGAPFNVTEKNVMEFL 314
Query: 76 SPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
+P+ PV + I +G +G V F + E+ +A+ +R + RYIE+F SSP
Sbjct: 315 APLKPVAIRIVRNAHGNKTGYIFVDFNSEEEVKKALKCNREYMGGRYIEVFREKSSP 371
>gi|224084107|ref|XP_002307213.1| predicted protein [Populus trichocarpa]
gi|222856662|gb|EEE94209.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVV 79
G ++ND P P R+ ++ + MRGLPF + +I++FF ++
Sbjct: 140 GIYDNDYHGSPP-----PSRAKRFSDKDQMEYTEILKMRGLPFSAKKAEIIEFFKDFKLI 194
Query: 80 PVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ I + +G+ +GEA V F + E+A +AMSKD+ I RY+ELF
Sbjct: 195 DERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVELF 241
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF ++ +I+ FF+ + V V + K+GR +GEA V FA A+
Sbjct: 48 PPFPVVRLRGLPFNCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQ 107
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 108 RDRQNMGRRYVEVF 121
>gi|397478241|ref|XP_003810461.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Pan
paniscus]
Length = 314
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 11/96 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
EA V FA+ E A +A+ K + I HRY E+F +S +
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYTEIFKSSRA 189
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>gi|255561415|ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 264
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGE 95
P R+ ++ + MRGLPF + +I++FF V I+ +G+ +GE
Sbjct: 159 PSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEIIEFFKEFELVEDRIHIACRPDGKATGE 218
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ ++A +AMSKD+ I RY+ELF
Sbjct: 219 AYVEFASADEAKRAMSKDKMTIGSRYVELF 248
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF + DI FF+ + V V + KNGR +GEA V FA A+ +DR
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQ 118
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 119 NMGRRYVEVF 128
>gi|9294416|dbj|BAB02497.1| unnamed protein product [Arabidopsis thaliana]
Length = 278
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ +RGLPF ++DI+DFF V+V +N GRP+GEA V F ED+ AM
Sbjct: 191 ILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVN-GEGRPTGEAFVEFRNAEDSRAAMV 249
Query: 112 KDRTNIRHRYIELFLNS 128
KDR + RYIELF +S
Sbjct: 250 KDRKTLGSRYIELFPSS 266
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 33 PGGFAGPRPGDRWVNESSGPGHHTV-------HMRGLPFRVNEKDIVDFFSPVVPVYVDI 85
PG F GP P ++ G +RGLPF E D+V+FF + V V
Sbjct: 14 PGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLF 73
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
++N + +GEA A+ K+R N+ RY+E+F ++
Sbjct: 74 VHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQ 118
>gi|388507286|gb|AFK41709.1| unknown [Lotus japonicus]
Length = 163
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMS 111
+ MRGLPF V + IVDFF ++ V I + +G+ +GEA V F + ++A +AMS
Sbjct: 74 EILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMS 133
Query: 112 KDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 134 KDKMMIGSRYVELF 147
>gi|26334977|dbj|BAC31189.1| unnamed protein product [Mus musculus]
Length = 500
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 314 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 373
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 374 RKHKELLGKRYIELFRSTAA 393
>gi|359063387|ref|XP_002685850.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 1157
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 CIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 504
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 505 AQKCHKKTMKDRYVEVFQCSA 525
>gi|441647515|ref|XP_003268407.2| PREDICTED: epithelial splicing regulatory protein 1 [Nomascus
leucogenys]
Length = 821
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 490 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 549
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 550 RKHKDLLGKRYIELFRSTAA 569
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 608 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 666
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 667 AQKCHKKNMKDRYVEVFQCSA 687
>gi|148667170|gb|EDK99586.1| mCG133010, isoform CRA_c [Mus musculus]
Length = 187
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
F R WV + SGP V +RGLPF +++IV FFS +VP + +
Sbjct: 86 FKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 145
Query: 88 K-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
G+ +GEA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 146 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>gi|328874866|gb|EGG23231.1| hypothetical protein DFA_05363 [Dictyostelium fasciculatum]
Length = 939
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 48 ESSGPGHH------TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYF 100
+ S P HH +V +RGLP+ V+E + +FF P+ ++DI Y NG+ +G+A V F
Sbjct: 418 QMSSPTHHPNNINASVLLRGLPWGVSEDAVREFFQPLDVSFIDIFYNSNGKQTGDASVEF 477
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
AT EDA ++ + + + RYIE+
Sbjct: 478 ATEEDANLSLDRHKQMMGTRYIEVI 502
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
TV +RGLPF E DI FF+ +V + I Y+ RP G A V F +D QA+S++
Sbjct: 800 TVKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRDRPMGIAYVTFTNSDDYHQALSRN 859
Query: 114 RTNIRHRYIELFLNSS 129
++ RYIE+F ++S
Sbjct: 860 NQHLGPRYIEVFPSTS 875
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ +RGLPF ++ DI F + P+ + + +N GR SGEA V F T + A A+S
Sbjct: 546 VLKLRGLPFSISTMDIRKFLNGYPIKSNNILMTMN-DEGRFSGEAYVEFQTSDIAQAALS 604
Query: 112 K-DRTNIRHRYIELF 125
+ RYIE F
Sbjct: 605 NLQNKTMMSRYIEFF 619
>gi|417412016|gb|JAA52424.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 627
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 348 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 408 RKHKDLLGKRYIELFRSTAA 427
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 467 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 525
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 526 QKCHKKTMKDRYVEVFQCSA 545
>gi|345793292|ref|XP_544182.3| PREDICTED: epithelial splicing regulatory protein 1 [Canis lupus
familiaris]
Length = 764
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQA 109
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A
Sbjct: 410 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 469
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K + + RYIELF ++++
Sbjct: 470 LRKHKDLLGKRYIELFRSTAA 490
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 529 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 587
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 588 AQKCHKKTMKDRYVEVFQCSA 608
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADV 98
+P +W E S P HTV +RG PF V EK++ +F +P+ PV + I +G +G V
Sbjct: 289 KPAVQW--EPSTP--HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFV 344
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
F++ E+ +A+ +R + RYIE+F + P
Sbjct: 345 DFSSEEEVKKALKCNREYMGGRYIEVFREKTVP 377
>gi|308464398|ref|XP_003094466.1| CRE-TWK-4 protein [Caenorhabditis remanei]
gi|308247695|gb|EFO91647.1| CRE-TWK-4 protein [Caenorhabditis remanei]
Length = 1026
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ + I FF P+ + I +GRP+G+A V F T EDA + + K R
Sbjct: 685 VRMRGLPYDCTDTQIRAFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQKGLLKHR 744
Query: 115 TNIRHRYIELFLNSSS 130
I RYIELF ++++
Sbjct: 745 QIIGQRYIELFKSTAA 760
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ +++ + FF+ +VP + + + GR +GE V FAT E A+ + R
Sbjct: 588 RGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFATQESRDLALKRHRNF 647
Query: 117 IRHRYIELF 125
+ RYIE++
Sbjct: 648 LLSRYIEVY 656
>gi|157883792|pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
gi|297787487|pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLPF +++IV FFS +VP + + G+ +GEA V FA+ E A +A+ K
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 104
Query: 114 RTNIRHRYIELFLNSS 129
+ I HRYIE+F +S
Sbjct: 105 KERIGHRYIEVFKSSQ 120
>gi|402878743|ref|XP_003903032.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Papio anubis]
Length = 604
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|170763527|ref|NP_001116297.1| epithelial splicing regulatory protein 1 isoform 4 [Homo sapiens]
Length = 608
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|148673703|gb|EDL05650.1| RNA binding motif protein 35A, isoform CRA_b [Mus musculus]
Length = 604
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKELLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
>gi|170763533|ref|NP_001116299.1| epithelial splicing regulatory protein 1 isoform 5 [Homo sapiens]
gi|114620967|ref|XP_001143905.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2 [Pan
troglodytes]
Length = 604
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|21618692|gb|AAH31468.1| RNA binding motif protein 35A [Mus musculus]
Length = 444
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 168 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 227
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 228 RKHKELLGKRYIELFRSTAA 247
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 286 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMA 344
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 345 AQKYHKKTMKDRYVEVFQCSA 365
>gi|297683325|ref|XP_002819333.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Pongo abelii]
Length = 604
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|452823782|gb|EME30790.1| RNA-binding protein [Galdieria sulphuraria]
Length = 739
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
+ TV MRGLPFR DI FFS D+ K GRPSGEA V F T E+A A+
Sbjct: 642 NRTVRMRGLPFRATISDIQFFFSDFHITESDVVLGFDKMGRPSGEAWVTFGTEEEARNAV 701
Query: 111 SK-DRTNIRHRYIELFLNSSSPRGGVG 136
S+ +I RYIELFL + +G
Sbjct: 702 SQLQHAHIGKRYIELFLCTQDKSVSLG 728
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVD-INYKNGRPSGEADVYFATHEDAMQ 108
P + +RGLP+ ++D+++F + V+P V + + G+P GEA V + +D +
Sbjct: 252 PTGSIIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQGKPRGEAFVQLLSVDDVNR 311
Query: 109 AMSKDRTNIRHRYIELFLNSSSPR 132
A+ R + HRYIE+F S+P+
Sbjct: 312 ALELHRQVLGHRYIEVF--KSTPQ 333
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVY 99
R V S + +RGLPF DI FF+ +VP +Y +N RP GEA V
Sbjct: 484 RSVLNSDASTCSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYF-VNNGLDRPKGEAFVQ 542
Query: 100 FATHEDAMQAM-SKDRTNIRHRYIELFLNSSSPRGGVGGSGFS 141
F++ ++ A+ KD+ + RY+ELF S + + GS
Sbjct: 543 FSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALLGSNLC 585
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP--------VYVDINYKNGRPSGEADVYFATHEDAM 107
+ MRGLPF + + FF + +++ + ++G P GEA V FA+ +
Sbjct: 371 IIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHI-VQNQDGHPIGEAFVEFASEDALN 429
Query: 108 QAMSKDRTNIRHRYIELFLNS 128
+A+ + + + RYIELF +S
Sbjct: 430 KALQRHKQMMGKRYIELFRSS 450
>gi|426360261|ref|XP_004047366.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 604
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|115484017|ref|NP_001065670.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|77548595|gb|ABA91392.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
gi|113644374|dbj|BAF27515.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|215764972|dbj|BAG86669.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222615462|gb|EEE51594.1| hypothetical protein OsJ_32846 [Oryza sativa Japonica Group]
Length = 298
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGE 95
PRP ++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GE
Sbjct: 193 PRPKKPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGE 252
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V F T E A AM KD+ I RY+ELF
Sbjct: 253 AFVEFPTAEVAKTAMCKDKMTIGTRYVELF 282
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 94 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 153
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 154 MGRRYVEVF 162
>gi|403295786|ref|XP_003938807.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 603
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|417412369|gb|JAA52574.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 701
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 348 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 408 RKHKDLLGKRYIELFRSTAA 427
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 467 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 525
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 526 QKCHKKTMKDRYVEVFQCSA 545
>gi|417412339|gb|JAA52559.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 697
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 348 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 408 RKHKDLLGKRYIELFRSTAA 427
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 467 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 525
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 526 QKCHKKTMKDRYVEVFQCSA 545
>gi|149061069|gb|EDM11679.1| similar to hypothetical protein FLJ20171 (predicted) [Rattus
norvegicus]
Length = 604
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 42.0 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQ 108
G+ V RGLP++ +++DI FF + + +N + GR +GEA V F + E
Sbjct: 223 GNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDL 281
Query: 109 AMSKDRTNIRHRYIELF 125
A+ + + ++ RYIE++
Sbjct: 282 ALQRHKHHMGTRYIEVY 298
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + RYIE+F + P V ++S
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKS 383
>gi|321446634|gb|EFX60905.1| hypothetical protein DAPPUDRAFT_122743 [Daphnia pulex]
Length = 169
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDF---FSPVVPVYVDINYKN-GRPSGEADVYFAT 102
N SG V MRGLPF + DI+ F FS + P + I+ N GRPSGEA V F
Sbjct: 84 NNGSGLPGTLVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPN 143
Query: 103 HEDAMQAMS-KDRTNIRHRYIELFL 126
+A +A++ K+R NI RYIELF+
Sbjct: 144 RAEAERAIAEKNRQNIGTRYIELFM 168
>gi|444525895|gb|ELV14190.1| Epithelial splicing regulatory protein 1, partial [Tupaia
chinensis]
Length = 689
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 339 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 398
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 399 RKHKDLLGKRYIELFRSTAA 418
Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 463 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 521
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 522 QKCHKKTMKDRYVEVFQCSA 541
>gi|344250517|gb|EGW06621.1| Epithelial splicing regulatory protein 1 [Cricetulus griseus]
Length = 677
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 176 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 235
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 236 RKHKDLLGKRYIELFRSTAA 255
>gi|410912184|ref|XP_003969570.1| PREDICTED: epithelial splicing regulatory protein 2-like [Takifugu
rubripes]
Length = 740
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 327 IRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V M+GLP+ KDI+ FF + P V I Y +G+ SGEA + F + E A QA++ +
Sbjct: 665 VRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEMAKQAVA-E 723
Query: 114 RTN 116
R+N
Sbjct: 724 RSN 726
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI++F + P V++ +N + GRPSG+A + + + A
Sbjct: 451 VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQLKSPDKAFLVA 509
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 510 QKCHKKTMKDRYVEVFQCST 529
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQ-GRRNGEALVRFINPEHRDLALER 284
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 285 HKHHMGNRYIEVY 297
>gi|7020094|dbj|BAA90992.1| unnamed protein product [Homo sapiens]
Length = 358
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQA 109
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K + + RYIELF ++++
Sbjct: 227 LRKHKDLLGKRYIELFRSTAA 247
>gi|405968884|gb|EKC33911.1| Epithelial splicing regulatory protein 2 [Crassostrea gigas]
Length = 727
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFS--PVVPVY------VDINYKNGRPSGEADVYFATHE 104
G + MRGLPF + +++FF+ P V V + ++Y +GR +G+A V A+ E
Sbjct: 323 GQVIIRMRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEE 382
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSS 130
DA+ A+ K R + RYIELF ++++
Sbjct: 383 DAVSALKKHREIMGTRYIELFKSTTA 408
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 46 VNESSGPG----------HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRP 92
+NE PG +H V RGLP++ +++DI FF + + GR
Sbjct: 205 INERLEPGICSKSDIVDDNHVVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRR 264
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWA 147
+GEA V ++ A+ + + +I RYIE++ ++ + V +G S SE A
Sbjct: 265 NGEALVRLENEQNRDLALKRHKHHIGQRYIEVY--KATGKDFVNVAGGSNSEAQA 317
Score = 39.3 bits (90), Expect = 0.60, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS---PVVPVYVDIN-YKNGRPSGEADVYFATHEDAMQAM-S 111
V MRGLP +DI++FF V P + I +GR +G+A + F T +A +A+ +
Sbjct: 652 VVMRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDGRLTGDALISFMTRSEAERAIAT 711
Query: 112 KDRTNIRHRYIELFL 126
+ + + IELFL
Sbjct: 712 RGKQTMGQCLIELFL 726
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + RYIE+F + P V ++S
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKS 383
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + RYIE+F + P V ++S
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKS 383
>gi|34192605|gb|AAH19932.1| ESRP1 protein [Homo sapiens]
Length = 656
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 376 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 435
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 436 RKHKDLLGKRYIELFRSTAA 455
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 495 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 553
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 554 QKCHKKNMKDRYVEVFQCSA 573
>gi|47217849|emb|CAG02342.1| unnamed protein product [Tetraodon nigroviridis]
Length = 776
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 358 IRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 417
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 418 KKHKQILGKRYIELFRSTAA 437
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDA-MQA 109
V +RGLP+ +DI++F + P V++ +N + GRPSG+A + + + A M A
Sbjct: 482 VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKSPDKAFMVA 540
Query: 110 MSKDRTNIRHRYIELFLNSS 129
+ ++ RY+E+F S+
Sbjct: 541 QKCHKKTMKDRYVEVFQCST 560
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 257 IRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQ-GRRNGEALVRFINSEHRDLALER 315
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 316 HKHHMGNRYIEVY 328
>gi|334312966|ref|XP_003339804.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Monodelphis domestica]
Length = 1253
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF D++ F P PV + ++Y +GRP+G+A FA E A A+
Sbjct: 882 IRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQGAL 941
Query: 111 SKDRTNIRHRYIELFLNSSSPRGGV 135
K + + RYIEL S +P GV
Sbjct: 942 RKHKGILGKRYIEL---SGAPPSGV 963
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + DI+ F + P V++ +N + GRPSG+A + + + A+ A
Sbjct: 1001 CVRLRGLPYTASIDDILGFLGEAAGDIRPHGVHMVLN-QQGRPSGDAFIQMKSADRALVA 1059
Query: 110 MSK-DRTNIRHRYIELFLNS 128
+ + ++ RY+E+F S
Sbjct: 1060 AQRCHKKMMKERYVEVFPCS 1079
>gi|156401541|ref|XP_001639349.1| predicted protein [Nematostella vectensis]
gi|156226477|gb|EDO47286.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY------VDINYKNGRPSGEADVYFATHEDAMQA 109
+ MRGLPF D+V FF VPVY + + +NG+ +G+A V F T E A
Sbjct: 112 IIRMRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRAA 171
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K R + RY+ELF +S S
Sbjct: 172 LKKHREVLGSRYVELFRSSQS 192
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP----VVPVYVDINYK-NGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF +D++DF V P V + Y GRPSG+A V + + A A
Sbjct: 247 CLRLRGLPFSATVQDVLDFLKEHAAYVAPGGVHMVYNTQGRPSGDAYVQLLSPDFAAAAA 306
Query: 111 SK-DRTNIRHRYIELFLNSSSPRGGVGGS 138
++ + ++ RYIE+F S+S V S
Sbjct: 307 NELHKHHMGERYIEVFPCSNSDISAVIAS 335
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 332 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 391
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + RYIE+F + P V ++S
Sbjct: 392 REYMGGRYIEVFREKNVPTTNVAPKNTTKS 421
>gi|348534026|ref|XP_003454504.1| PREDICTED: RNA-binding protein 12B-A-like [Oreochromis niloticus]
Length = 634
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFS-PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLPF V EK+I DFF VV V I + G +G V FAT EDAM+ + +DR
Sbjct: 140 LFLKGLPFSVTEKEICDFFGGLVVDEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRDRE 199
Query: 116 NIRHRYIEL 124
I RYIE+
Sbjct: 200 YIGSRYIEI 208
>gi|85700309|gb|AAI12044.1| ESRP1 protein [Homo sapiens]
Length = 392
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQA 109
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A
Sbjct: 174 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 233
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K + + RYIELF ++++
Sbjct: 234 LRKHKDLLGKRYIELFRSTAA 254
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 293 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 351
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 352 AQKCHKKNMKDRYVEVFQCSA 372
>gi|402878741|ref|XP_003903031.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Papio anubis]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|297683323|ref|XP_002819332.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Pongo abelii]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|224064269|ref|XP_002191895.1| PREDICTED: epithelial splicing regulatory protein 2 [Taeniopygia
guttata]
Length = 702
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ DI++F V++ +N + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
+ A M A + ++ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N GR +GEA V F E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLN-SQGRRNGEALVRFVNSEQRDLALER 286
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 287 HKHHMGSRYIEVY 299
>gi|170763529|ref|NP_001116298.1| epithelial splicing regulatory protein 1 isoform 3 [Homo sapiens]
gi|114620965|ref|XP_001143826.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1 [Pan
troglodytes]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|344273261|ref|XP_003408442.1| PREDICTED: epithelial splicing regulatory protein 1 [Loxodonta
africana]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|74183823|dbj|BAE24496.1| unnamed protein product [Mus musculus]
Length = 680
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 RKHKELLGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 504
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 505 QKYHKKTMKDRYVEVFQCSA 524
>gi|348500206|ref|XP_003437664.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oreochromis niloticus]
Length = 741
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 327 IRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDA-MQA 109
V +RGLP+ +DI++F + P V++ +N + GRPSG+A + + + A M A
Sbjct: 451 VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKSPDKAFMVA 509
Query: 110 MSKDRTNIRHRYIELFLNSS 129
+ ++ RY+E+F S+
Sbjct: 510 QKCHKKTMKDRYVEVFQCST 529
Score = 37.0 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V M+GLP+ KDI+ FF + P V I Y +G+ SGEA + F + E A +A++ +
Sbjct: 666 VRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEIARRAVA-E 724
Query: 114 RTN 116
R+N
Sbjct: 725 RSN 727
>gi|229462862|sp|Q3US41.2|ESRP1_MOUSE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 680
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 RKHKELLGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 504
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 505 QKYHKKTMKDRYVEVFQCSA 524
>gi|165972311|ref|NP_918944.2| epithelial splicing regulatory protein 1 [Mus musculus]
Length = 681
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKELLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
>gi|395818385|ref|XP_003782611.1| PREDICTED: epithelial splicing regulatory protein 1 [Otolemur
garnettii]
Length = 665
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 316 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 375
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 376 RKHKDLLGKRYIELFRSTAA 395
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 435 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 493
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 494 QKCHKKTMKDRYVEVFQCSA 513
>gi|348588464|ref|XP_003479986.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Cavia porcellus]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|410987483|ref|XP_004000030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Felis catus]
Length = 604
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYK 88
N+ PG A D+ N+ +TV +RG PF V EK++++F +P+ PV + I
Sbjct: 274 NEIPG--AARAEADKLANQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNA 331
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
+G +G V F + E+ QA+ +R + RYIE+F + P
Sbjct: 332 HGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVP 374
>gi|338728568|ref|XP_003365698.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Equus caballus]
Length = 604
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|335286314|ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Sus scrofa]
Length = 608
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|426360259|ref|XP_004047365.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|56790297|ref|NP_060167.2| epithelial splicing regulatory protein 1 isoform 1 [Homo sapiens]
gi|124020999|sp|Q6NXG1.2|ESRP1_HUMAN RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|119612127|gb|EAW91721.1| RNA binding motif protein 35A, isoform CRA_b [Homo sapiens]
gi|127799385|gb|AAH67098.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 681
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|355698103|gb|EHH28651.1| RNA-binding protein 35A [Macaca mulatta]
gi|355779831|gb|EHH64307.1| RNA-binding protein 35A [Macaca fascicularis]
Length = 681
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|426360257|ref|XP_004047364.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|395739900|ref|XP_003777336.1| PREDICTED: epithelial splicing regulatory protein 1 [Pongo abelii]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|189230098|ref|NP_001121036.2| epithelial splicing regulatory protein 1 [Rattus norvegicus]
gi|187469151|gb|AAI66735.1| RGD1560481 protein [Rattus norvegicus]
Length = 659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQ 108
G+ V RGLP++ +++DI FF + + +N + GR +GEA V F + E
Sbjct: 223 GNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDL 281
Query: 109 AMSKDRTNIRHRYIELF 125
A+ + + ++ RYIE++
Sbjct: 282 ALQRHKHHMGTRYIEVY 298
>gi|127799644|gb|AAH99916.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|297299790|ref|XP_002808532.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1-like [Macaca mulatta]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 42.7 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K N++ RY+E+F S+
Sbjct: 506 QKCHXKNMKDRYVEVFQCSA 525
>gi|403295784|ref|XP_003938806.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Saimiri boliviensis boliviensis]
Length = 676
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|402878739|ref|XP_003903030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Papio anubis]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|348588462|ref|XP_003479985.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Cavia porcellus]
Length = 681
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|296226947|ref|XP_002807679.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1 [Callithrix jacchus]
Length = 676
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|229485495|sp|B2RYD2.2|ESRP1_RAT RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQ 108
G+ V RGLP++ +++DI FF + + +N + GR +GEA V F + E
Sbjct: 223 GNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDL 281
Query: 109 AMSKDRTNIRHRYIELF 125
A+ + + ++ RYIE++
Sbjct: 282 ALQRHKHHMGTRYIEVY 298
>gi|170763525|ref|NP_001030087.2| epithelial splicing regulatory protein 1 isoform 2 [Homo sapiens]
gi|332830836|ref|XP_003311899.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan
troglodytes]
Length = 677
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|357517683|ref|XP_003629130.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355523152|gb|AET03606.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 290
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVV 79
G ++ND P P R+ ++ + MRGLPF V + I+DFF ++
Sbjct: 173 GIYDNDYQGSPP-----PSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYKLI 227
Query: 80 PVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V I + +G+ +GEA V F + ++A +AM KD+ I RY+ELF
Sbjct: 228 EGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELF 274
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF + DI+ FF+ + V V + K+GR SGEA V FA A+ +DR
Sbjct: 85 VVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQ 144
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 145 NMGRRYVEVF 154
>gi|296088657|emb|CBI37648.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI FF+ + V V + K+GR SGEA V FA A A+
Sbjct: 55 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 114
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 115 RDRQNMGRRYVEVF 128
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADV 98
+R+ ++ + +RGLPF V + I++FF V++ +G+ +GEA V
Sbjct: 142 ERFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELGDDKVHIACR-PDGKATGEAYV 200
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELF 125
FA+ E+A +AM KD+ I RY+ELF
Sbjct: 201 EFASAEEAKKAMGKDKMTIGSRYVELF 227
>gi|341896441|gb|EGT52376.1| hypothetical protein CAEBREN_32196, partial [Caenorhabditis
brenneri]
Length = 616
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ ++ I FF P+ + I +GRP+G+A V F T EDA + + K R
Sbjct: 285 VRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKHR 344
Query: 115 TNIRHRYIELFLNSSS 130
I RYIELF ++++
Sbjct: 345 HIIGQRYIELFKSTAA 360
Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ +++ + FF+ +VP + + + GR +GE V FA+ E A+ + R
Sbjct: 188 RGLPWQASDQHVAQFFAGLDIVPCGIALCLSSEGRRNGEVLVQFASQESRDLALKRHRNF 247
Query: 117 IRHRYIELF 125
+ RYIE++
Sbjct: 248 LLSRYIEVY 256
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 332 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 391
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + RYIE+F + P V ++S
Sbjct: 392 REYMGGRYIEVFREKNIPTTNVAPKNTTKS 421
>gi|296803341|gb|ADH51734.1| ESRP1/RAF1 fusion protein [Homo sapiens]
Length = 1061
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
>gi|148673702|gb|EDL05649.1| RNA binding motif protein 35A, isoform CRA_a [Mus musculus]
Length = 483
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 203 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 262
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 263 RKHKELLGKRYIELFRSTAA 282
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 322 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 380
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 381 QKYHKKTMKDRYVEVFQCSA 400
>gi|351713464|gb|EHB16383.1| Epithelial splicing regulatory protein 1 [Heterocephalus glaber]
Length = 677
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 322 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 381
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 382 RKHKDLLGKRYIELFRSTAA 401
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 443 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAS 501
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 502 QKCHKKTMKDRYVEVFQCSA 521
>gi|37747755|gb|AAH59280.1| Rbm35a protein, partial [Mus musculus]
Length = 490
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 210 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 269
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 270 RKHKELLGKRYIELFRSTAA 289
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 329 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 387
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 388 QKYHKKTMKDRYVEVFQCSA 407
>gi|410987481|ref|XP_004000029.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Felis catus]
Length = 659
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVV---PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|338728566|ref|XP_003365697.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Equus caballus]
Length = 659
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVV---PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|335286312|ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Sus scrofa]
Length = 681
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 48 ESSGPGH-------HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVY 99
E+ P H HTV +RG PF V EK++V+F +P+ PV + I +G +G V
Sbjct: 282 ETERPAHQKEPTTPHTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYVFVD 341
Query: 100 FATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
F++ E+ +A+ +R + RYIE+F + P
Sbjct: 342 FSSEEEVKKALKCNREYMGGRYIEVFREKNIP 373
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F++ E+ +A+ +
Sbjct: 301 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCN 360
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F S P
Sbjct: 361 REYMGGRYIEVFREKSIP 378
>gi|440906249|gb|ELR56534.1| Epithelial splicing regulatory protein 1, partial [Bos grunniens
mutus]
Length = 715
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 365 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 424
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 425 RKHKDLLGKRYIELFRSTAA 444
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 481 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 539
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 540 QKCHKKTMKDRYVEVFQCSA 559
>gi|326917907|ref|XP_003205236.1| PREDICTED: epithelial splicing regulatory protein 1-like [Meleagris
gallopavo]
Length = 671
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKDLLGRRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVV---PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFLAA 504
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RYIE+F S+
Sbjct: 505 QKCHKKTMKDRYIEVFQCSA 524
>gi|410987479|ref|XP_004000028.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Felis catus]
Length = 677
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|431917858|gb|ELK17089.1| Epithelial splicing regulatory protein 1 [Pteropus alecto]
Length = 680
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 295 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 354
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 355 RKHKDLLGKRYIELFRSTAA 374
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 450 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 508
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 509 QKCHKKTMKDRYVEVFQCSA 528
>gi|300795130|ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus]
gi|296480439|tpg|DAA22554.1| TPA: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 677
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|301782433|ref|XP_002926629.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Ailuropoda melanoleuca]
Length = 677
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|281352677|gb|EFB28261.1| hypothetical protein PANDA_016305 [Ailuropoda melanoleuca]
Length = 656
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|194214972|ref|XP_001915056.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Equus caballus]
Length = 677
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|390332535|ref|XP_001184447.2| PREDICTED: probable RNA-binding protein 19-like [Strongylocentrotus
purpuratus]
Length = 513
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHE 104
+E G T+ MRG+PF V E+D+V FF+P+ + +N K G+ +G V FA+ +
Sbjct: 364 DEKYERGDFTIKMRGVPFNVKEEDVVKFFAPLSMKTIRAPLNEK-GQRTGVIFVEFASED 422
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D +AM ++R + RY+ELF
Sbjct: 423 DITKAMKRNREYMGRRYVELF 443
>gi|432852904|ref|XP_004067443.1| PREDICTED: epithelial splicing regulatory protein 2-like [Oryzias
latipes]
Length = 695
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++++ F P PV + + Y +GRP+G+A V F+ E A+
Sbjct: 284 IRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYVQNAL 343
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 344 KKHKQILGKRYIELFRSTAA 363
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDA-MQA 109
V +RGLP+ +DI++F + P V++ +N + GRPSG+A + + + A M A
Sbjct: 406 VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLN-QQGRPSGDAFIQMKSADRAFMVA 464
Query: 110 MSKDRTNIRHRYIELFLNSS 129
+ ++ RY+E+F S+
Sbjct: 465 QKCHKKTMKDRYVEVFQCST 484
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDA 106
S PG V M+GLP+ KDI+ FF + P V I Y +G+ SGEA + F + + A
Sbjct: 614 SQPGA-LVRMQGLPYNTGVKDILSFFQGYQLQPDAVVILYNFSGQCSGEALITFPSEDLA 672
Query: 107 MQAMSKDRTN 116
+A++ +R+N
Sbjct: 673 RRAVA-ERSN 681
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|395512150|ref|XP_003760307.1| PREDICTED: epithelial splicing regulatory protein 1 [Sarcophilus
harrisii]
Length = 550
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 RKHKDLLGKRYIELFRSTAA 406
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 226 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 285 HKHHMGNRYIEVY 297
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 307 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 366
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 367 REYMGGRYIEVFREKNVP 384
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|449434084|ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV 81
G ++ND P PR R+ ++ + +RGLPF V + +I++FF
Sbjct: 147 GIYDNDYHGSPP-----PRQ-KRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLA 200
Query: 82 YVDINYK---NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I+ +G+ +GEA V FA+ E+A +AMSKD+ I RY+ELF
Sbjct: 201 EDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 247
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF + DI FF+ + V V + KNGR GEA V FA A+ +DR
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQ 118
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 119 NMGRRYVEVF 128
>gi|359476979|ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI FF+ + V V + K+GR SGEA V FA A A+
Sbjct: 55 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 114
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 115 RDRQNMGRRYVEVF 128
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV-- 79
G ++ND P P R+ ++ + +RGLPF V + I++FF
Sbjct: 147 GIYDNDFHGSPP-----PSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELG 201
Query: 80 --PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V++ +G+ +GEA V FA+ E+A +AM KD+ I RY+ELF
Sbjct: 202 DDKVHIACR-PDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELF 248
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|449491253|ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV 81
G ++ND P PR R+ ++ + +RGLPF V + +I++FF
Sbjct: 140 GIYDNDYHGSPP-----PR-QKRFSDKDQMEYTEILKLRGLPFSVTKSNIIEFFGEFDLA 193
Query: 82 YVDINYK---NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
I+ +G+ +GEA V FA+ E+A +AMSKD+ I RY+ELF
Sbjct: 194 EDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELF 240
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF + DI FF+ + V V + KNGR GEA V FA A+ +DR
Sbjct: 52 VVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQ 111
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 112 NMGRRYVEVF 121
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDA 106
E S P HTV +RG PF V EK++V+F +P+ PV + I +G +G V F++ E+
Sbjct: 293 EPSTP--HTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSSEEEV 350
Query: 107 MQAMSKDRTNIRHRYIELFLNSSSP 131
+A+ +R + RYIE+F + P
Sbjct: 351 KKALKCNRDYMGGRYIEVFREKNVP 375
>gi|334326246|ref|XP_001379501.2| PREDICTED: epithelial splicing regulatory protein 1 [Monodelphis
domestica]
Length = 677
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILEFLGEFSTAIQTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 285
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 286 HKHHMGNRYIEVY 298
>gi|147834707|emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P V +RGLPF + DI FF+ + V V + K+GR SGEA V FA A A+
Sbjct: 48 PTFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQ 107
Query: 112 KDRTNIRHRYIELF 125
+DR N+ RY+E+F
Sbjct: 108 RDRQNMGRRYVEVF 121
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 22 GCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV-- 79
G ++ND P P R+ ++ + +RGLPF V + I++FF
Sbjct: 140 GIYDNDFHGSPP-----PSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQILEFFGDFELG 194
Query: 80 --PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V++ +G+ +GEA V FA+ E+A +AM KD+ I RY+ELF
Sbjct: 195 DDKVHIACR-PDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELF 241
>gi|449494990|ref|XP_002198687.2| PREDICTED: epithelial splicing regulatory protein 1 [Taeniopygia
guttata]
Length = 766
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 KKHKDLLGKRYIELFRSTAA 407
Score = 38.5 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFLAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|383856881|ref|XP_003703935.1| PREDICTED: uncharacterized protein LOC100878893 [Megachile
rotundata]
Length = 1212
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K ++DFF + P +V +
Sbjct: 835 GVAGGTSGEAHAFLSRG-AQVIVRMRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFV 893
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+GR +G+A V FA EDA++A+SK R I RYIELF
Sbjct: 894 KKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELF 933
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F E A+ +
Sbjct: 755 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKRH 814
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
+ ++ RYIE++ S GV G
Sbjct: 815 KHHMGGRYIEVYKASGEDFVGVAG 838
>gi|363730887|ref|XP_418338.3| PREDICTED: epithelial splicing regulatory protein 1 [Gallus gallus]
Length = 636
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 KKHKDLLGKRYIELFRSTAA 407
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFLAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
+ + ++ RY+E+F S+
Sbjct: 506 QRCHKKTMKDRYVEVFQCSA 525
>gi|426236209|ref|XP_004012064.1| PREDICTED: epithelial splicing regulatory protein 1 [Ovis aries]
Length = 761
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 412 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 471
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 472 RKHKDLLGKRYIELFRSTAA 491
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 531 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 589
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 590 QKCHKKTMKDRYVEVFQCSA 609
>gi|358420736|ref|XP_001789374.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
gi|296490145|tpg|DAA32258.1| TPA: fusilli-like [Bos taurus]
Length = 767
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKCHKKTMKDRYVEVFQCSA 525
>gi|119612126|gb|EAW91720.1| RNA binding motif protein 35A, isoform CRA_a [Homo sapiens]
Length = 503
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 168 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 227
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 228 RKHKDLLGKRYIELFRSTAA 247
Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 287 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 345
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 346 QKCHKKNMKDRYVEVFQCSA 365
>gi|47225436|emb|CAG11919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP------VVPV------YVDINYKNGRPSGEADVYFATHE 104
+ MRGLPF + ++ FFSP PV + + Y +GRP+G+A V FA E
Sbjct: 355 IRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACEE 414
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSS 130
A A+ K + + RYIELF ++++
Sbjct: 415 HAQCALRKHKEILGRRYIELFKSTAA 440
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F + E A+ +
Sbjct: 254 IRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 312
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 313 HKHHMGNRYIEVY 325
>gi|268529124|ref|XP_002629688.1| C. briggsae CBR-SYM-2 protein [Caenorhabditis briggsae]
Length = 613
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ + I FF P+ + I +GRP+G A V F T EDA Q + K R
Sbjct: 274 VRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGCAFVQFETEEDAQQGLLKHR 333
Query: 115 TNIRHRYIELFLNSSS 130
I RYIELF ++++
Sbjct: 334 QVIGQRYIELFKSTAA 349
Score = 36.6 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVPVY-VDINYKN-GRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + IV+F F+ +V V + Y N G PSGEA + + + A S
Sbjct: 382 VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMISEQAAAATAS 441
Query: 112 KDRTNI-----RHRYIELFLNSS 129
N + RYIE+F +S+
Sbjct: 442 GVHNNFMCVGKKKRYIEVFQSSA 464
>gi|229891743|sp|A8WPC5.2|SYM2_CAEBR RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
Length = 634
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVY--FATHEDAMQAMSK 112
V MRGLP+ + I FF P+ + I +GRP+G D + F T EDA Q + K
Sbjct: 287 VRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLLK 346
Query: 113 DRTNIRHRYIELFLNSSS 130
R I RYIELF ++++
Sbjct: 347 HRQVIGQRYIELFKSTAA 364
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVPVY-VDINYKN-GRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + IV+F F+ +V V + Y N G PSGEA + + + A S
Sbjct: 397 VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMISEQAAAATAS 456
Query: 112 KDRTNI-----RHRYIELFLNSS 129
N + RYIE+F +S+
Sbjct: 457 GVHNNFMCVGKKKRYIEVFQSSA 479
>gi|410905415|ref|XP_003966187.1| PREDICTED: epithelial splicing regulatory protein 1-like [Takifugu
rubripes]
Length = 741
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP------VVPV------YVDINYKNGRPSGEADVYFATHE 104
V MRGLPF + ++ FFSP P+ + + Y +GRP+G+A V FA E
Sbjct: 337 VRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACEE 396
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSS 130
A A+ K + + RYIELF ++++
Sbjct: 397 HAQCALRKHKEILGRRYIELFKSTAA 422
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ + +DI++F V++ +N + GRPSG+ + + E A+QA
Sbjct: 464 LRLRGLPYTASIEDILNFLGEFTQDVRQHGVHMVLN-QQGRPSGDCFIQMTSLERALQAS 522
Query: 111 SKDRTNI-------RHRYIELFLNSSSPRGGV--GGS 138
+ + RY+E+F S+ G V GGS
Sbjct: 523 QRLHKQVMFSQRGSNSRYVEVFPCSAEEMGLVLMGGS 559
Score = 36.6 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 236 IRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQ-GRRNGEALVRFINEEHRDLALQR 294
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 295 HKHHMGNRYIEVY 307
>gi|395510177|ref|XP_003759357.1| PREDICTED: epithelial splicing regulatory protein 2, partial
[Sarcophilus harrisii]
Length = 470
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF D++ F P PV + + Y +GRP+G+A FA E A A+
Sbjct: 77 IRMRGLPFTATPADVLAFLGPECPVTGGHEGLLFVRYPDGRPTGDAFALFACEELAQSAL 136
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 137 RKHKGILGKRYIELFRSTAA 156
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + DI+ F V V++ +N + GRPSG+A + + + A+ A
Sbjct: 197 VRLRGLPYTASIDDILGFLGEVAGDIRPHGVHMVLN-QQGRPSGDAFIQMKSADRALVAA 255
Query: 111 SK-DRTNIRHRYIELF 125
+ + ++ RY+E+F
Sbjct: 256 QRCHKKMMKERYVEVF 271
Score = 36.2 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V M+GLP+ KDI+ FF P V V ++ +GRP G+A V F + + A +A+++
Sbjct: 397 VRMQGLPYTAGVKDILSFFQGYQLPADSVLV-LHSFSGRPRGDALVTFPSLDAARRAVAE 455
Query: 113 D 113
+
Sbjct: 456 E 456
>gi|226500358|ref|NP_001148837.1| LOC100282455 [Zea mays]
gi|195622512|gb|ACG33086.1| RNA binding protein [Zea mays]
gi|238009718|gb|ACR35894.1| unknown [Zea mays]
Length = 303
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF N+ D+ FF + V + KNGR +GEA V F T A A+ +DR
Sbjct: 97 CVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQ 156
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 157 NMGRRYVEVF 166
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMS 111
+ +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T E A AM
Sbjct: 214 EVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAMC 273
Query: 112 KDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 274 KDKMTIGTRYVELF 287
>gi|355686615|gb|AER98118.1| epithelial splicing regulatory protein 1 [Mustela putorius furo]
Length = 561
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 236 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 295
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 296 RKHKDLLGKRYIELFRSTAA 315
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 355 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 413
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 414 QKCHKKTMKDRYVEVFQCSA 433
>gi|341902820|gb|EGT58755.1| CBN-SYM-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V MRGLP+ ++ I FF P+ + I +GRP+G+A V F T EDA + + K
Sbjct: 362 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 421
Query: 114 RTNIRHRYIELFLNSSS 130
R I RYIELF ++++
Sbjct: 422 RHIIGQRYIELFKSTAA 438
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ +++ + FF+ +VP + + + GR +GE V FA+ E A+ + R
Sbjct: 212 RGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFASQESRDLALKRHRNF 271
Query: 117 IRHRYIELF 125
+ RYIE++
Sbjct: 272 LLSRYIEVY 280
>gi|327269521|ref|XP_003219542.1| PREDICTED: epithelial splicing regulatory protein 1-like [Anolis
carolinensis]
Length = 648
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 321 VRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYAQNAL 380
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 381 KKHKDLLGKRYIELFRSTAA 400
Score = 40.0 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+ F FS + V++ +N++ GRPSG+A + + E A A
Sbjct: 440 IRLRGLPYAATIEDILGFLGEFSADIRTHGVHMVLNHQ-GRPSGDAFIQMKSSERAFMAA 498
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 499 QKCHKKTMKDRYVEVFQCSA 518
>gi|428185861|gb|EKX54712.1| hypothetical protein GUITHDRAFT_57099, partial [Guillardia theta
CCMP2712]
Length = 203
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
V MRGLPF V E+DI +FFS ++ I + ++GRP+GEA V F ++ +A+S
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 113 DRTNIRHRYIELF 125
DR ++ RY+E+F
Sbjct: 61 DRKHMGTRYVEVF 73
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFF--SPVVPVYVD-INYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLP+ E D+ DFF S V P V+ I G SG+A V + E+ M+A++
Sbjct: 124 VVKVRGLPYSAKEADVFDFFCSSNVRPSGVNLIQNARGESSGDAYVELGSEEEVMRALAL 183
Query: 113 DRTNIRHRYIELFLNSSS 130
R+N HRY+E+F S +
Sbjct: 184 HRSNFGHRYLEIFRTSRA 201
>gi|260819360|ref|XP_002605005.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
gi|229290334|gb|EEN61015.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
Length = 645
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLP+ DI++FF PV + + Y NGR +G+A V F T A A+
Sbjct: 318 VRMRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLAL 377
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+K + ++ RYIELF ++++
Sbjct: 378 AKHKESLGKRYIELFRSTAA 397
Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ +RGLP++ +++DI FF + V V +N GR +GEA V FA+ E A+ +
Sbjct: 216 LRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLN-PQGRRNGEALVRFASKEHRDLALLR 274
Query: 113 DRTNIRHRYIELF 125
+ +I RYIE++
Sbjct: 275 HKHHIGQRYIEVY 287
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLP++ D++ F VYV + +G+PSG+ + + E A QA
Sbjct: 436 VRMRGLPYQATHDDVLAFLGEYA-VYVRDHGIHMVLNSSGKPSGDCFIQMYSPEAARQAA 494
Query: 111 SK-DRTNIRHRYIELF 125
K R + RYIE+F
Sbjct: 495 EKCHRQYMGDRYIEVF 510
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V EK++ +F +P+ PV + I +G +G V F++ E+ +A+ +
Sbjct: 294 YTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNSHGNKTGYIFVDFSSEEEVKKALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F SSP
Sbjct: 354 REYMGGRYIEVFREKSSP 371
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 33 PGGFAGP---RPGD------RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
PG A P RP D + N+ HTV +RG PF V EK++ +F +P+ PV +
Sbjct: 258 PGHRAPPEHGRPQDSRAESEKPTNQKEPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAI 317
Query: 84 DI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
I +G +G V F++ E+ +A+ +R + RYIE+F P
Sbjct: 318 RIVRNAHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVFREKQVP 366
>gi|324527735|gb|ADY48838.1| Heterogeneous nuclear ribonucleoprotein F, partial [Ascaris suum]
Length = 166
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
++ V +RG+PF DI +FFS V V +D + GRPSGEA V A+ E A A+
Sbjct: 40 NYVVRLRGIPFSATVADIKEFFSGLDVADVVID-KEQGGRPSGEAFVRLASKEHAELALE 98
Query: 112 KDRTNIRHRYIELFLNS 128
+ + N+ RY+E+F +S
Sbjct: 99 RSKNNMGSRYVEVFRSS 115
>gi|440793766|gb|ELR14941.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 622
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD---INYKN--GRPSGEADVYFATHEDAMQAM 110
V MRGLPFR E +IV FF +D + KN GR +GEA V F + EDA +A+
Sbjct: 122 VVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQFGSDEDARRAL 181
Query: 111 SKDRTNIRHRYIELF 125
+ R + RYIELF
Sbjct: 182 ERHRDQMGSRYIELF 196
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQA 109
G G V +RGLPF E++I ++F+P+ V I +GRPSG+A F A
Sbjct: 258 GDGEWVVRLRGLPFSATEEEIANWFAPMPARRVHIILTGSGRPSGDAFAEFDNEAQWEHA 317
Query: 110 MSKDRTNIRHRYIELFLNS 128
MSK+R ++ RY+E+F +S
Sbjct: 318 MSKNRQHMGSRYVEIFGSS 336
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV---------VPVYVDINYKNGRPSGEADVYFATHEDA 106
V +RGLP++ E DI +FF + +P + +GRP+GE +F E
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
++A++KD+ + RYIE+F S
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQS 91
>gi|388513407|gb|AFK44765.1| unknown [Medicago truncatula]
Length = 158
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 29 WNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDIN 86
++D G P R+ ++ + MRGLPF V + I+DFF ++ V I
Sbjct: 43 YDDDYQGSPPPSRSKRFSDKEQMDYTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIA 102
Query: 87 YK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ +G+ +GEA V F + ++A +AM KD+ I RY+ELF
Sbjct: 103 CRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELF 142
>gi|328779875|ref|XP_397080.4| PREDICTED: epithelial splicing regulatory protein 2 [Apis
mellifera]
Length = 1215
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K +V FF S P +V +
Sbjct: 838 GVAGGTSGEAHAFLSRG-AQVIVRMRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFV 896
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+GR +G+A V FA EDA++A+SK R I RYIELF
Sbjct: 897 KKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELF 936
Score = 39.3 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F E A+ +
Sbjct: 758 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKRH 817
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
+ ++ RYIE++ S GV G
Sbjct: 818 KHHMGGRYIEVYKASGEDFVGVAG 841
>gi|52346028|ref|NP_001005057.1| epithelial splicing regulatory protein 1 [Xenopus (Silurana)
tropicalis]
gi|82182765|sp|Q6DEZ7.1|ESRP1_XENTR RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|49899931|gb|AAH76946.1| MGC89324 protein [Xenopus (Silurana) tropicalis]
Length = 687
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKELLGKRYIELFRSTAA 408
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG++ + + + A A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAYLAA 506
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSA 526
>gi|313227785|emb|CBY22933.1| unnamed protein product [Oikopleura dioica]
Length = 559
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVPV-----YVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
MRGLPF +++DI+ F + V I G+P+G+A V A+ +DA+QA+ +
Sbjct: 238 MRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQALGRH 297
Query: 114 RTNIRHRYIELFLNSSS 130
+ N+R RY+E+F ++ +
Sbjct: 298 KANLRDRYVEVFRSTGA 314
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RG+P++ ++ D+ FF P V + +N +NGR SGEA + F E A+ +
Sbjct: 135 VRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLN-QNGRRSGEALIRFENSEHRNLALQR 193
Query: 113 DRTNIRHRYIELF 125
R ++ +RYIE+F
Sbjct: 194 HRQHMGNRYIEVF 206
Score = 36.6 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFATHEDAMQA- 109
V +RG+P+ +DI++F ++P V++ +N + GRPSG+A + HE A +
Sbjct: 354 VRLRGMPYSATLEDIMNFLGESSQFILPAGVHMVLN-QQGRPSGDAFIQLQAHEFASRVA 412
Query: 110 --MSKDRTNIRH---RYIELF 125
++K + +H RY+E+F
Sbjct: 413 LDVNKGGCHKKHMGERYVEVF 433
>gi|238006754|gb|ACR34412.1| unknown [Zea mays]
Length = 251
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF N+ D+ FF + V + KNGR +GEA V F T A A+ +DR
Sbjct: 45 CVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRDRQ 104
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 105 NMGRRYVEVF 114
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 48 ESSGPGHHT--VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFAT 102
E G +T + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 153 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPT 212
Query: 103 HEDAMQAMSKDRTNIRHRYIELF 125
E A AM KD+ I RY+ELF
Sbjct: 213 AEVAKTAMCKDKMTIGTRYVELF 235
>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
gi|82241595|sp|Q7ZY29.1|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
Length = 688
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKELLGKRYIELFRSTAA 408
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG++ + + + A A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAYLAA 506
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSA 526
>gi|403281594|ref|XP_003932266.1| PREDICTED: probable RNA-binding protein 19 [Saimiri boliviensis
boliviensis]
Length = 960
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV V I +G +G V F+ E+ +A+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAVRIVRNAHGNKTGYIFVDFSNEEEVKKALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>gi|168066869|ref|XP_001785353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663050|gb|EDQ49838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF ++ D+ DFF+ + V V + NGR SGEA V F A+ K+R
Sbjct: 29 VVRLRGLPFNCSDSDVFDFFAGLDVVDVLLVRMNGRFSGEAYVVFGAPVQVDYALQKNRH 88
Query: 116 NIRHRYIELF 125
NI RYIE+F
Sbjct: 89 NIGRRYIEVF 98
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLPF + D++DFF V++ + + +GR +GEA V F + A AM+
Sbjct: 154 VVKLRGLPFSATKSDVMDFFREFELHDEHVHIML-HSDGRTTGEAFVDFGSASKAKSAMN 212
Query: 112 KDRTNIRHRYIELFLNS 128
KD+ + RY+E+F +S
Sbjct: 213 KDKMTMGSRYVEIFPSS 229
>gi|348526958|ref|XP_003450986.1| PREDICTED: epithelial splicing regulatory protein 1 [Oreochromis
niloticus]
Length = 738
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP------VVPV------YVDINYKNGRPSGEADVYFATHE 104
V MRGLPF + ++ FFSP PV + + Y +GRP+G+A V FA E
Sbjct: 353 VRMRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLFACEE 412
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSS 130
A A+ K + + RYIELF ++++
Sbjct: 413 HAQCALRKHKEILGKRYIELFKSTAA 438
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F + E A+ +
Sbjct: 252 IRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQ-GRRNGEALVRFVSEEHRELALQR 310
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 311 HKHHMGNRYIEVY 323
Score = 36.2 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA- 109
+ +RGLP+ + +DI+ F V++ +N + GRPSG+ + + E A+QA
Sbjct: 480 LRLRGLPYTASIEDILTFLGEFTQDIRPHGVHMVLN-QQGRPSGDCFIQMTSAERALQAS 538
Query: 110 -------MSKDRTNIRHRYIELFLNSSSPRGGV 135
MS R RY+E+F S+ G V
Sbjct: 539 QRLHKHVMSSQR-GANSRYVEVFPCSAEEMGLV 570
>gi|229485446|sp|B2RYJ8.1|ESRP2_RAT RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|187469463|gb|AAI66804.1| Rbm35b protein [Rattus norvegicus]
Length = 716
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 349 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 408
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 409 RRHKGMLGKRYIELFRSTAA 428
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 458 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 516
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRSEL 145
E A+ A + + ++ RY+E+ S+ V GGS SRS L
Sbjct: 517 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGS-LSRSGL 561
>gi|157818053|ref|NP_001100893.1| epithelial splicing regulatory protein 2 [Rattus norvegicus]
gi|149038076|gb|EDL92436.1| RNA binding motif protein 35b (predicted) [Rattus norvegicus]
Length = 717
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRSEL 145
E A+ A + + ++ RY+E+ S+ V GGS SRS L
Sbjct: 518 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGS-LSRSGL 562
>gi|218185179|gb|EEC67606.1| hypothetical protein OsI_34981 [Oryza sativa Indica Group]
Length = 270
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 16 RFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF 75
R+ G C + ++ A +P + ++SS + +RGLP+ +DI+ FF
Sbjct: 149 RYVEGCRCKKQEYYS----AIAAEKPAE---DKSSMEYTEVLKLRGLPYSATTEDIIKFF 201
Query: 76 SP--VVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ V I Y+ +G+ +GEA V F T E A AM KD+ I RY+ELF
Sbjct: 202 VEYELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELF 254
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 117 IRHRYIE 123
+ RY+E
Sbjct: 146 MGRRYVE 152
>gi|358253640|dbj|GAA53549.1| epithelial splicing regulatory protein 1 [Clonorchis sinensis]
Length = 1176
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDIN------YKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF ++ I+DFF V PV ++ N Y GRP+G+A V F+ + A +A
Sbjct: 514 VRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAYPEGRPTGDAFVLFSDDKTATRA 573
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ + + + RY+ELF S S
Sbjct: 574 LLRHKDYLGDRYVELFKASPS 594
>gi|324504848|gb|ADY42090.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 282
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP+ E++I FF P V I ++ RPSGEA V F +ED A+++
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 113 DRTNIRHRYIELFLNSSS 130
D+ ++ RYIE+F S+S
Sbjct: 116 DKQHMGKRYIEVFPASAS 133
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 50 SGPGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATH 103
S PG T V +RGLP+ +I FF P+ + + ++++G+ +G+A V F
Sbjct: 151 SLPGRDTSIVRLRGLPYGCTNDEITRFFHPIPIAANGIVLPYDHRSGKATGDAFVAFYEP 210
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNS 128
+ A +A+ ++R NI+HRYIE+F +S
Sbjct: 211 DSAARALERNRNNIQHRYIEVFPSS 235
>gi|302782846|ref|XP_002973196.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
gi|300158949|gb|EFJ25570.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
Length = 289
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 13/92 (14%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEA 96
D+ + E +G + +RGLPF +++DIV+FF V + V + +GR +GEA
Sbjct: 193 DKDLAEHTG----VLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVV---HSDGRATGEA 245
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
V+F D+ AM+KD+ + +RY+ELF +S
Sbjct: 246 YVFFLGPGDSKAAMNKDKMTLGNRYVELFPSS 277
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF +E D+ +FF+ + V V + K GR SGEA V A+ ++R
Sbjct: 66 VVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQ 125
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 126 NMGRRYVEVF 135
>gi|393909284|gb|EFO25784.2| hypothetical protein LOAG_02706 [Loa loa]
Length = 229
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV---VPV----YVDINYKNGRPSGEA 96
R+V+ S G V MRGLP+ E I++FF+ V + +N +GRP+G+A
Sbjct: 71 RFVSRGS-TGAMIVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDA 129
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
V F + E +A++K + I RYIELF ++ + V + VH S
Sbjct: 130 FVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLENDQRMIVHGS 184
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G F+ E+ QA+ +
Sbjct: 331 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFADFSNEEEVKQALKCN 390
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 391 REYMGGRYIEVFREKNIP 408
>gi|219111791|ref|XP_002177647.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410532|gb|EEC50461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 245
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 53 GHHT--VHMRGLPFRVNEKDIVDFFSPVVPVY--VDINYKN-GRPSGEADVYFATHEDAM 107
G HT + +RGLPF DI FF P V + Y+N GR +GEA + FAT +D+
Sbjct: 151 GEHTGFLRVRGLPFSATRDDIFKFFLGYNPTQESVVLTYRNDGRATGEAYIGFATADDSK 210
Query: 108 QAMSKDRTNIRHRYIELFLNSSSPRG 133
+AM R + RY+ELF+++ G
Sbjct: 211 RAMELHRRVMGSRYVELFISNKDEHG 236
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIR 118
+R LP+ +DI+ F +V + V I+ + G+A V FA D A+ +DR I
Sbjct: 7 LRNLPYDAALEDILILFQGLVVIDVVISSQ-----GDAFVIFANPMDFQMALQRDRQTIG 61
Query: 119 HRYIELFLNSSS------PRGGVGGSGFSRSELW 146
R++E+ + S + G S + + LW
Sbjct: 62 RRFVEIVAATRSEYYDAIAKKSAGESASAMASLW 95
>gi|302789778|ref|XP_002976657.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
gi|300155695|gb|EFJ22326.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
Length = 287
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 13/92 (14%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEA 96
D+ + E +G + +RGLPF +++DIV+FF V + V + +GR +GEA
Sbjct: 191 DKDLAEHTG----VLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVV---HSDGRATGEA 243
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
V+F D+ AM+KD+ + +RY+ELF +S
Sbjct: 244 YVFFLGPGDSKAAMNKDKMTLGNRYVELFPSS 275
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V +RGLPF +E D+ +FF+ + V V + K GR SGEA V A+ ++R
Sbjct: 66 VVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFALQRNRQ 125
Query: 116 NIRHRYIELF 125
N+ RY+E+F
Sbjct: 126 NMGRRYVEVF 135
>gi|312070751|ref|XP_003138291.1| hypothetical protein LOAG_02706 [Loa loa]
Length = 224
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV---VPV----YVDINYKNGRPSGEA 96
R+V+ S G V MRGLP+ E I++FF+ V + +N +GRP+G+A
Sbjct: 66 RFVSRGS-TGAMIVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDA 124
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
V F + E +A++K + I RYIELF ++ + V + VH S
Sbjct: 125 FVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLENDQRMIVHGS 179
>gi|307196545|gb|EFN78075.1| RNA-binding protein 35A [Harpegnathos saltator]
Length = 760
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K +++FF S P +V +
Sbjct: 271 GVAGGTSGEAHAFLSRG-AEVIVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFV 329
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+GR +G+A V FA EDA++A+SK R I RYIELF ++++
Sbjct: 330 KKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTA 374
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F E A+ +
Sbjct: 191 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKRH 250
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
+ ++ RYIE++ S GV G
Sbjct: 251 KHHMGARYIEVYKASGEDFVGVAG 274
>gi|357143317|ref|XP_003572878.1| PREDICTED: G-rich sequence factor 1-like isoform 1 [Brachypodium
distachyon]
Length = 292
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF + DI+ FF + V + +KNGR SGEA V F + A A+ ++R N
Sbjct: 87 VRLRGLPFDCEDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQN 146
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 147 MGRRYVEVF 155
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 195 DKSSMDYTEVLKLRGLPYSATIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTA 254
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E A AM KD+ I RY+ELF
Sbjct: 255 EVAKTAMCKDKMTIGTRYVELF 276
>gi|428180581|gb|EKX49448.1| hypothetical protein GUITHDRAFT_104977 [Guillardia theta CCMP2712]
Length = 443
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 48 ESSGPGHHT-VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATH 103
E G G T V +RGLP+ D+++FF + + I + GRPSGEA V F
Sbjct: 347 EPKGKGATTKVKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRI 406
Query: 104 EDAMQAM-SKDRTNIRHRYIELFL 126
EDA +A+ KDR ++ RY+ELFL
Sbjct: 407 EDARKAVREKDRHHMGDRYVELFL 430
>gi|345326895|ref|XP_001507064.2| PREDICTED: epithelial splicing regulatory protein 1, partial
[Ornithorhynchus anatinus]
Length = 605
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQA 109
V MRGLPF ++ FF P+ + + Y +GRP+G+A V FA E A A
Sbjct: 255 IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 314
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
+ K + + RYIELF ++++
Sbjct: 315 LRKHKDLLGKRYIELFRSTAA 335
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 374 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 432
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 433 AQKCHKKTMKDRYVEVFQCSA 453
>gi|432909348|ref|XP_004078165.1| PREDICTED: epithelial splicing regulatory protein 1-like [Oryzias
latipes]
Length = 656
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP------VVPV------YVDINYKNGRPSGEADVYFATHE 104
V MRGLPF + ++ FFSP PV + + Y +GRP+G+A V F+ E
Sbjct: 347 VRMRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLFSCEE 406
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSS 130
A+ A+ K + + RYIELF ++++
Sbjct: 407 HALCALRKHKEILGKRYIELFKSTAA 432
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ P + I +G +G V F++ E+ +A+ +
Sbjct: 296 HTVKLRGAPFNVTEKNVLEFLAPLKPAAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCN 355
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 356 REYMGGRYIEVFREQNVP 373
>gi|357143320|ref|XP_003572879.1| PREDICTED: G-rich sequence factor 1-like isoform 2 [Brachypodium
distachyon]
Length = 274
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF + DI+ FF + V + +KNGR SGEA V F + A A+ ++R N
Sbjct: 69 VRLRGLPFDCEDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQN 128
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 129 MGRRYVEVF 137
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 177 DKSSMDYTEVLKLRGLPYSATIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTA 236
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E A AM KD+ I RY+ELF
Sbjct: 237 EVAKTAMCKDKMTIGTRYVELF 258
>gi|428180638|gb|EKX49505.1| hypothetical protein GUITHDRAFT_105029 [Guillardia theta CCMP2712]
Length = 374
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATHEDAMQAM-S 111
TV +RGLPF D++ F V I N ++GRPSGEA V F E+A + +
Sbjct: 287 TVKLRGLPFGATSLDVMGFLKGYNAVESSIRFGNNQDGRPSGEAWVSFNRLEEAKRVVRE 346
Query: 112 KDRTNIRHRYIELFL 126
KDR ++ +RY+ELFL
Sbjct: 347 KDRHHLGNRYVELFL 361
>gi|449667958|ref|XP_002158900.2| PREDICTED: epithelial splicing regulatory protein 1-like [Hydra
magnipapillata]
Length = 503
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVD----INYKNGRPSGEADVYFATHEDA 106
G + MRGLPF D+V+FF SP V + I+Y +G +G+A V F T +
Sbjct: 317 GEVIIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGVMLISYPDGASTGDAFVLFETEAEG 376
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
A+ K R NI RY+ELF ++ +
Sbjct: 377 QFALKKHRENIGKRYVELFRSTRA 400
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++V++ D+ FF+ + V + +N K GR +GEA V F + E A+ +
Sbjct: 217 VRARGLPWQVSDVDVAAFFTGLNIAKGGVALCLNVK-GRRNGEALVRFESSEHRDMALRR 275
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 276 HKHHLLGRYIEVY 288
>gi|299472433|emb|CBN77621.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 305
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYF 100
GD + + GP V +RGLPF D++ FF +VP+ V + +GR +GEA V
Sbjct: 78 GDYSLEDVLGP-FPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVL 136
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ A+S+D+ ++ RYIE+F
Sbjct: 137 PNLMEMQMALSRDKQHMGRRYIEIF 161
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 52 PGHHT--VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDA 106
P HT + MRGLPF ++D+++FF PV + + +GR +GEA V F++ ++
Sbjct: 213 PVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAES 272
Query: 107 MQAMSKDRTNIRHRYIELFLNSSSP 131
AMS++ ++ RY+ELF +S+P
Sbjct: 273 EAAMSRNGNHMGTRYVELF--ASTP 295
>gi|332029325|gb|EGI69308.1| RNA-binding protein fusilli [Acromyrmex echinatior]
Length = 677
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K +++FF S P V +
Sbjct: 271 GVAGGTSGEAHAFLSRG-AQVIVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFV 329
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+GR +G+A V FA EDA++A+SK R I RYIELF ++++
Sbjct: 330 KKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTA 374
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F E A+ +
Sbjct: 191 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKRH 250
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
+ ++ RYIE++ S GV G
Sbjct: 251 KHHMGARYIEVYKASGEDFIGVAG 274
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFA 101
++ N+ +TV +RG PF V EK++ +F +P+ PV + I +G +G V F+
Sbjct: 282 EKAANQKEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYIFVDFS 341
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
+ E+ +A+ +R + RYIE+F +P
Sbjct: 342 SEEEVKKALKCNREYMGGRYIEVFREKQAP 371
>gi|238013930|gb|ACR38000.1| unknown [Zea mays]
gi|413946698|gb|AFW79347.1| RNA binding protein [Zea mays]
Length = 295
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF N+ DI FF + V + KNGR +GEA V F T A+ ++R N
Sbjct: 89 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 148
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 149 MGRRYVEVF 157
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+ FF V++ I +G+ +GEA V F T E A AM
Sbjct: 206 EVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIR-SDGKATGEAFVEFPTAEVAKTAM 264
Query: 111 SKDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 265 CKDKMTIGTRYVELF 279
>gi|346703322|emb|CBX25419.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTA 253
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E A AM KD+ I RY+ELF
Sbjct: 254 EVAKTAMCKDKMTIGTRYVELF 275
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 146 MGRRYVEVF 154
>gi|226501122|ref|NP_001148833.1| RNA binding protein [Zea mays]
gi|195622468|gb|ACG33064.1| RNA binding protein [Zea mays]
Length = 268
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF N+ DI FF + V + KNGR +GEA V F T A+ ++R N
Sbjct: 89 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 148
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 149 MGRRYVEVF 157
>gi|427788565|gb|JAA59734.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1011
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
PGH V M GLP V ++DI DFFS V+P + I NG P+G A FATH D +
Sbjct: 667 PGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCER 726
Query: 109 AMSKDRTNIRHRYIEL 124
A +D N+ I L
Sbjct: 727 AFLQDGANLGPHVIAL 742
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
V M+GLP+ +E+D++ FFS + + + + + ++GR +G A V F D AMS R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 115 TNIRHRYIELFLNS 128
I HRYIEL + S
Sbjct: 587 RKIGHRYIELSVGS 600
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++ LP+ N DI +F + ++ G G+A + F + EDA QAM +D
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIVGGE-KGDAFIAFGSDEDARQAMERDGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ I+L L+S +
Sbjct: 63 KIKEVRIKLLLSSRA 77
>gi|413946699|gb|AFW79348.1| hypothetical protein ZEAMMB73_203104 [Zea mays]
Length = 242
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF N+ DI FF + V + KNGR +GEA V F T A+ ++R N
Sbjct: 36 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 95
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 96 MGRRYVEVF 104
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+ FF V++ I +G+ +GEA V F T E A AM
Sbjct: 153 EVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIR-SDGKATGEAFVEFPTAEVAKTAM 211
Query: 111 SKDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 212 CKDKMTIGTRYVELF 226
>gi|302839324|ref|XP_002951219.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
gi|300263548|gb|EFJ47748.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
Length = 245
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 3 DANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGL 62
D TGAN F G R D+ + ++GL
Sbjct: 10 DLAAAQAVGTGANSFPGAAPEVARQRQADQSSAI--------------------LKLKGL 49
Query: 63 PFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY 121
P+ E DI FF+P V Y+ +GRPSG A F + E+A++A+SK+ I RY
Sbjct: 50 PYSATENDIRQFFAPYELKGVSFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRY 109
Query: 122 IELF 125
+ L
Sbjct: 110 VRLL 113
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINY-KNGRPSGEADVYFATHEDAMQAM-S 111
T+ +RGLP+ + +I+ FF +P + I + GRPSGEA + F++ ++A++A+
Sbjct: 170 TIKIRGLPYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAWLSFSSPQEALRAVRD 229
Query: 112 KDRTNIRHRYIEL 124
+R + RY+EL
Sbjct: 230 LNRHYLGTRYLEL 242
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-INYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ P + + +G +G V F++ E+ +A+ +
Sbjct: 297 HTVKLRGAPFNVTEKNVMEFLAPLKPAAIRVVRNAHGNKTGYVFVDFSSEEEVRKALKCN 356
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 357 REYMGGRYIEVFRERNVP 374
>gi|427788569|gb|JAA59736.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1004
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
PGH V M GLP V ++DI DFFS V+P + I NG P+G A FATH D +
Sbjct: 667 PGHTCVSMLGLPNTVTDRDIADFFSIQGVIPRAIHIMLGANGVPTGHAFAEFATHADCER 726
Query: 109 AMSKDRTNIRHRYIEL 124
A +D N+ I L
Sbjct: 727 AFLQDGANLGPHVIAL 742
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
V M+GLP+ +E+D++ FFS + + + + + ++GR +G A V F D AMS R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 115 TNIRHRYIELFLNS 128
I HRYIEL + S
Sbjct: 587 RKIGHRYIELSVGS 600
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++ LP+ N DI +F + ++ G G+A + F + EDA QAM +D
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIVGGE-KGDAFIAFGSDEDARQAMERDGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ I+L L+S +
Sbjct: 63 KIKEVRIKLLLSSRA 77
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ +A+ +
Sbjct: 400 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKKALKCN 459
Query: 114 RTNIRHRYIELF 125
R + RYIE+F
Sbjct: 460 REYMGGRYIEVF 471
>gi|302828822|ref|XP_002945978.1| splicing factor like protein [Volvox carteri f. nagariensis]
gi|300268793|gb|EFJ52973.1| splicing factor like protein [Volvox carteri f. nagariensis]
Length = 578
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN------YKNGRPSGEADVYFATHEDAMQA 109
V RGLP+ +D+++FF PV I +GRP+GEA V F T + +A
Sbjct: 129 VVRCRGLPYTATAQDVLNFFGSDAPVVRGIEGVVFTYAPDGRPTGEAFVEFQTEDAQREA 188
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ K + ++ RYIELF+++
Sbjct: 189 LKKHKESMGARYIELFVST 207
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P + +RGLPF E+D+ FFS V I + GR +GE V + A +A+
Sbjct: 33 PKSSVLRLRGLPFSAGEEDVRHFFSGFNVAQVVIGKRAGRSTGEGYVQLDSTSAAAEAIM 92
Query: 112 K-DRTNIRHRYIELFLNSSS 130
K R + HRYIE+F ++ +
Sbjct: 93 KLHRQTLGHRYIEVFESTEA 112
>gi|239052941|ref|NP_001131830.2| uncharacterized protein LOC100193205 [Zea mays]
gi|223943183|gb|ACN25675.1| unknown [Zea mays]
gi|238908614|gb|ACF80415.2| unknown [Zea mays]
Length = 241
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF N+ DI FF + V + KNGR +GEA V F T A+ ++R N
Sbjct: 35 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 94
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 95 MGRRYVEVF 103
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 48 ESSGPGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFA 101
E G +T + +RGLP+ +DI+ FF V++ I+ +G+ +GEA V F
Sbjct: 143 EDKGSMEYTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIS-SDGKATGEAFVEFP 201
Query: 102 THEDAMQAMSKDRTNIRHRYIELF 125
T E A M KD+ I RY+ELF
Sbjct: 202 TTEVAKTVMCKDKMTIGTRYVELF 225
>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae]
gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]
Length = 885
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 385 IRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 444
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 445 AKALGRHRESIGQRYIELFRSTTA 468
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 280 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEHRDMA 339
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 340 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 374
>gi|17865825|ref|NP_524691.1| fusilli, isoform D [Drosophila melanogaster]
gi|24653906|ref|NP_725481.1| fusilli, isoform E [Drosophila melanogaster]
gi|24653908|ref|NP_725482.1| fusilli, isoform F [Drosophila melanogaster]
gi|75021514|sp|Q9BJZ5.1|FUSIL_DROME RecName: Full=RNA-binding protein fusilli
gi|13183640|gb|AAK15280.1|AF321979_1 fusilli [Drosophila melanogaster]
gi|21645395|gb|AAM70981.1| fusilli, isoform D [Drosophila melanogaster]
gi|21645396|gb|AAM70982.1| fusilli, isoform E [Drosophila melanogaster]
gi|21645397|gb|AAM70983.1| fusilli, isoform F [Drosophila melanogaster]
Length = 967
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|223944441|gb|ACN26304.1| unknown [Zea mays]
Length = 284
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF N+ DI FF + V + KNGR +GEA V F T A+ ++R N
Sbjct: 78 VRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQN 137
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 138 MGRRYVEVF 146
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+ FF V++ I+ +G+ +GEA V F T E A M
Sbjct: 195 EVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIS-SDGKATGEAFVEFPTTEVAKTVM 253
Query: 111 SKDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 254 CKDKMTIGTRYVELF 268
>gi|346703709|emb|CBX24377.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 146 MGRRYVEVF 154
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ ++I+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEEIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 253
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E A AM KD+ I RY+ELF
Sbjct: 254 EVAKTAMCKDKMTIGTRYVELF 275
>gi|345308102|ref|XP_001505380.2| PREDICTED: epithelial splicing regulatory protein 2-like
[Ornithorhynchus anatinus]
Length = 729
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + Y +GRP+G+A FA + A A+
Sbjct: 349 IRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSAL 408
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 409 RRHKGILGKRYIELFRSTAA 428
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ D++DF V++ +N + GRPSG+A + + E A A
Sbjct: 469 VRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLN-QQGRPSGDAFIQMKSAERAQVAA 527
Query: 111 SK-DRTNIRHRYIELF 125
+ + ++ RY+E+F
Sbjct: 528 QRCHKKMMKERYVEVF 543
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V EK++++F +P+ PV + I +G +G V ++ E+ +A+ +
Sbjct: 293 YTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 352
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F +P
Sbjct: 353 RDYMGGRYIEVFREKQAP 370
>gi|222616578|gb|EEE52710.1| hypothetical protein OsJ_35118 [Oryza sativa Japonica Group]
Length = 291
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 145
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 146 MGRRYVEVF 154
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 194 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 253
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E AM KD+ I RY+ELF
Sbjct: 254 EVVKTAMCKDKMTIGTRYVELF 275
>gi|159469283|ref|XP_001692797.1| splicing factor [Chlamydomonas reinhardtii]
gi|158278050|gb|EDP03816.1| splicing factor [Chlamydomonas reinhardtii]
Length = 647
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN------YKNGRPSGEADVYFATHEDAMQA 109
+ RGLP+ +D+++FF VP+ I +GRP+GEA V T E +A
Sbjct: 119 VIRCRGLPYTSTAQDVLNFFGADVPIVRGIEGVVFTYAPDGRPTGEAFVELQTEEAQREA 178
Query: 110 MSKDRTNIRHRYIELFLNS 128
+ K + ++ RYIELF+++
Sbjct: 179 LKKHKESLGSRYIELFVST 197
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
S P + +RGLPF E D+ FF+ V I + GR +GE V + A A
Sbjct: 21 SVPKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGEGYVQLDSVAAAADA 80
Query: 110 MSK-DRTNIRHRYIELFLNSSS 130
++K R + HRYIE+F ++ +
Sbjct: 81 IAKLHRQTLGHRYIEVFESTEA 102
>gi|297612598|ref|NP_001066073.2| Os12g0131000 [Oryza sativa Japonica Group]
gi|255670013|dbj|BAF29092.2| Os12g0131000 [Oryza sativa Japonica Group]
Length = 292
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 87 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 146
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 147 MGRRYVEVF 155
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 195 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 254
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
E AM KD+ I RY+ELF
Sbjct: 255 EVVKTAMCKDKMTIGTRYVELF 276
>gi|291232095|ref|XP_002735981.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Saccoglossus kowalevskii]
Length = 861
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMS 111
G + MRG+PF +EK+I +FF+P+ V + I KNG+ G A V D +AM+
Sbjct: 273 GEFVIEMRGIPFYCSEKEISEFFAPIEVVAIHIVKNKNGKQLGFARVELKNENDLKEAMT 332
Query: 112 KDRTNIRHRYIELFL 126
+ + +R R IE+ L
Sbjct: 333 RHKDYMRGRCIEIAL 347
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
TV + GLPF+ E +IV FF P+ P+ V + + K R SG A V FAT + +A+ K +
Sbjct: 429 TVRVLGLPFKAREPEIVGFFKPLKPIDVRLLFDKRKRSSGRAFVDFATKPEWKKALEKHK 488
Query: 115 TNIRHRYIEL 124
+ + RYIE+
Sbjct: 489 SKMGKRYIEV 498
>gi|345495521|ref|XP_001604031.2| PREDICTED: RNA-binding protein fusilli-like [Nasonia vitripennis]
Length = 817
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DINYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ K +++FF + P V + +GR +G+A V FA EDA
Sbjct: 353 VRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDAA 412
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R I RYIELF ++++
Sbjct: 413 KALSKHRDCIGSRYIELFRSTTA 435
Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++D+ FF + + GR +GEA V F + E A+ +
Sbjct: 252 VRARGLPWQSSDQDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEHRDMALKRH 311
Query: 114 RTNIRHRYIELF 125
+ +I RYIE++
Sbjct: 312 KHHIDQRYIEVY 323
>gi|77553600|gb|ABA96396.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
Length = 235
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 35 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 94
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 95 MGRRYVEVF 103
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATH 103
++SS + +RGLP+ +DI+ FF + V I Y+ +G+ +GEA V F T
Sbjct: 143 DKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTA 202
Query: 104 EDAMQAMSKDRTNI 117
E AM KD+ I
Sbjct: 203 EVVKTAMCKDKMTI 216
>gi|328790346|ref|XP_003251410.1| PREDICTED: hypothetical protein LOC100578631 [Apis mellifera]
Length = 878
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V MRGLPF+ ++DI+DFFS +VP + + ++NG+P+GE F T ++A++A +K+
Sbjct: 645 CVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRATAKN 704
>gi|198415693|ref|XP_002128145.1| PREDICTED: similar to RNA binding motif protein 19 [Ciona
intestinalis]
Length = 766
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
+V MRG PF + EK I +FF P+ +++ + G +G V+F T ED A+ +
Sbjct: 144 SVKMRGCPFNIKEKQIREFFFPITVKSLNVQKTDHGSRTGFVYVHFKTEEDREAALKHNG 203
Query: 115 TNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTSE 152
I+ RYIELF ++ G G + ++ W +E
Sbjct: 204 DYIKGRYIELFKQLAAKHQGKQGPYYEKA--WMKKVAE 239
>gi|380019192|ref|XP_003693498.1| PREDICTED: uncharacterized protein LOC100871735 [Apis florea]
Length = 879
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V MRGLPF+ ++DI+DFFS +VP + + ++NG+P+GE F T ++A++A +K+
Sbjct: 646 CVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRATAKN 705
>gi|417404143|gb|JAA48844.1| Putative rna-binding protein fusilli [Desmodus rotundus]
Length = 717
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D+++F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLEFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|307181801|gb|EFN69244.1| RNA-binding protein 35A [Camponotus floridanus]
Length = 762
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K +++FF S P V +
Sbjct: 269 GIAGGTSGEAHAFLSRG-AQVIVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFV 327
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+GR +G+A V FA EDA++A+SK R I RYIELF ++++
Sbjct: 328 KKPDGRATGDAFVLFAKEEDAVKALSKHRDLIGSRYIELFRSTTA 372
Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F E A+ +
Sbjct: 189 VRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKRH 248
Query: 114 RTNIRHRYIELFLNSSSPRGGVGG 137
+ ++ RYIE++ S G+ G
Sbjct: 249 KHHMGPRYIEVYKASGEDFVGIAG 272
>gi|108743797|gb|ABG02207.1| IP16182p [Drosophila melanogaster]
Length = 694
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|281343470|gb|EFB19054.1| hypothetical protein PANDA_014807 [Ailuropoda melanoleuca]
Length = 947
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGH---------------HTVHMRGLPFRVNEKDIVDFFS 76
RPG AGP G NE+ G +TV +RG PF V EK + +F +
Sbjct: 248 RPG--AGPEQGVPSGNETPGTARAEADKAAHQKEPTTPYTVKLRGAPFNVTEKSVTEFLA 305
Query: 77 PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
P+ PV + I +G +G V F++ E+ QA+ R + RYIE+F
Sbjct: 306 PLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCHREYMGGRYIEVF 355
>gi|388499278|gb|AFK37705.1| unknown [Medicago truncatula]
Length = 94
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMS 111
+ MRGLPF V + I+DFF ++ V I + +G+ +GEA V F + ++A +AM
Sbjct: 5 EILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRAMF 64
Query: 112 KDRTNIRHRYIELF 125
KD+ I RY+ELF
Sbjct: 65 KDKMTIGSRYVELF 78
>gi|270009942|gb|EFA06390.1| hypothetical protein TcasGA2_TC009268 [Tribolium castaneum]
Length = 751
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV---------VPVYVDINYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ K ++DFF+ + + +GR +G+A V FA+ DA
Sbjct: 329 VRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDAP 388
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R I RYIELF ++++
Sbjct: 389 KALSKHRECIGSRYIELFRSTTA 411
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FFS + + GR +GEA + F + E A+ +
Sbjct: 228 VRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKRH 287
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ +I RYIE++ S V G S ++
Sbjct: 288 KHHIGPRYIEVYRASGEDFLSVAGGKSSEAQ 318
>gi|321459051|gb|EFX70109.1| hypothetical protein DAPPUDRAFT_202511 [Daphnia pulex]
Length = 514
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVPVYVD-------INYKNGRPSGEADV 98
S G V MRGLP+ K +V+FF V +D + +GR +G+A V
Sbjct: 270 SRSGQVIVRMRGLPYDCTAKQVVEFFESGGEDVGSTVLDGDSGVLFVKKHDGRATGDAFV 329
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FAT E+ +A++K R I RYIELF ++++
Sbjct: 330 MFATEEEGSKALAKHRDIIGSRYIELFRSTTA 361
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FF + + GR +GEA V F + E A+ +
Sbjct: 176 VRARGLPWQSSDQDIARFFRGLNVARGGVALCLSPQGRRNGEALVRFISPEHRDMALKRH 235
Query: 114 RTNIRHRYIELF 125
+ +I RYIE++
Sbjct: 236 KHHIGQRYIEVY 247
>gi|354484335|ref|XP_003504344.1| PREDICTED: epithelial splicing regulatory protein 2 [Cricetulus
griseus]
Length = 707
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 340 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAAL 399
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 400 RRHKGMLGKRYIELFRSTAA 419
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 449 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 507
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRS 143
E A+ A + + ++ RY+E+ S+ V GGS SRS
Sbjct: 508 SERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGS-LSRS 550
>gi|322778928|gb|EFZ09344.1| hypothetical protein SINV_16613 [Solenopsis invicta]
Length = 565
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF-SPVVPVYV--------DI 85
G AG G+ S G V MRGLP+ K +++FF S P V +
Sbjct: 59 GVAGGTSGEAHAFLSRG-AQVIVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFV 117
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
+GR +G+A V FA EDA++A+SK R I RYIELF ++++
Sbjct: 118 KKPDGRATGDAFVLFAKEEDAVKALSKHRDCIGSRYIELFRSTTA 162
>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster]
gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]
Length = 860
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|402580830|gb|EJW74779.1| hypothetical protein WUBG_14313, partial [Wuchereria bancrofti]
Length = 292
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 52 PGHHT--VHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHED 105
PG T V + GLP+ +++IV FF P+ + + + +G+P GEA V F E
Sbjct: 22 PGRETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDES 81
Query: 106 AMQAMSKDRTNIRHRYIELFLNS 128
A +A++K++ I+HRY++++ +S
Sbjct: 82 ASKALAKNKEYIQHRYVDIYPSS 104
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 29 WNDRP--GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVD 73
W D P GG G P R ++ P + + MRGLP+R E+DI+D
Sbjct: 248 WRDEPPMGGHRGYSPPRR--RYTTPPPEYCIRMRGLPYRATERDIID 292
>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]
Length = 860
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
>gi|332227572|ref|XP_003262966.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Nomascus leucogenys]
Length = 717
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKAMLGKRYIELFRSTAA 429
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|344253993|gb|EGW10097.1| Epithelial splicing regulatory protein 2 [Cricetulus griseus]
Length = 697
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 330 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAAL 389
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 390 RRHKGMLGKRYIELFRSTAA 409
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 439 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 497
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRS 143
E A+ A + + ++ RY+E+ S+ V GGS SRS
Sbjct: 498 SERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGS-LSRS 540
>gi|332227574|ref|XP_003262967.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Nomascus leucogenys]
Length = 727
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKAMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
>gi|301779826|ref|XP_002925333.1| PREDICTED: probable RNA-binding protein 19-like [Ailuropoda
melanoleuca]
Length = 963
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGH---------------HTVHMRGLPFRVNEKDIVDFFS 76
RPG AGP G NE+ G +TV +RG PF V EK + +F +
Sbjct: 260 RPG--AGPEQGVPSGNETPGTARAEADKAAHQKEPTTPYTVKLRGAPFNVTEKSVTEFLA 317
Query: 77 PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
P+ PV + I +G +G V F++ E+ QA+ R + RYIE+F
Sbjct: 318 PLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCHREYMGGRYIEVF 367
>gi|170587834|ref|XP_001898679.1| fusilli [Brugia malayi]
gi|158593949|gb|EDP32543.1| fusilli, putative [Brugia malayi]
Length = 467
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP-------VVPVYVDINYKNGRPSGEA 96
R+V+ S G V MRGLP+ E I++FF+ + +N +GRP+G+A
Sbjct: 119 RFVSRGS-TGAMIVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDA 177
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELF--LNSSSPRGGV 135
V F E +A++K + I RYIELF LN S + V
Sbjct: 178 FVMFDNEEAGQKALTKHKRTIGTRYIELFRQLNYRSTQAEV 218
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ + DI FF + + GR +GEA V F E A+ +
Sbjct: 28 VRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSEQRELALKRH 87
Query: 114 RTNIRHRYIELFLNSSS 130
R + +RYIE++ + S
Sbjct: 88 RHFLHNRYIEVYRATGS 104
>gi|189238842|ref|XP_970801.2| PREDICTED: similar to fusilli CG8205-PD [Tribolium castaneum]
Length = 683
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV---------VPVYVDINYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ K ++DFF+ + + +GR +G+A V FA+ DA
Sbjct: 329 VRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDAP 388
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R I RYIELF ++++
Sbjct: 389 KALSKHRECIGSRYIELFRSTTA 411
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ +++DI FFS + + GR +GEA + F + E A+ +
Sbjct: 228 VRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKRH 287
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ +I RYIE++ S V G S ++
Sbjct: 288 KHHIGPRYIEVYRASGEDFLSVAGGKSSEAQ 318
>gi|24653910|ref|NP_725483.1| fusilli, isoform B [Drosophila melanogaster]
gi|21645398|gb|AAM70984.1| fusilli, isoform B [Drosophila melanogaster]
gi|27820059|gb|AAO25059.1| GH20047p [Drosophila melanogaster]
gi|71834259|gb|AAZ41802.1| GH11127p [Drosophila melanogaster]
gi|220947106|gb|ACL86096.1| fus-PB [synthetic construct]
Length = 633
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 48 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 107
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 108 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 159
>gi|24653901|ref|NP_725479.1| fusilli, isoform C [Drosophila melanogaster]
gi|21645394|gb|AAM70980.1| fusilli, isoform C [Drosophila melanogaster]
Length = 891
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|149063465|gb|EDM13788.1| RNA binding motif protein 19 (predicted) [Rattus norvegicus]
Length = 451
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNG 90
RP AG E + P +TV +RG PF V EK++++F +P+ PV + I +G
Sbjct: 273 RPQEAAGKVEKPASQKEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHG 330
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF--LNSSSPRGGVGGS 138
+G V ++ E+ +A+ +R + RYIE+F +S+ RG S
Sbjct: 331 NKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGAPKSS 380
>gi|348572536|ref|XP_003472048.1| PREDICTED: epithelial splicing regulatory protein 2 [Cavia
porcellus]
Length = 719
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 352 LRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 411
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 412 RRHKGMLGKRYIELFRSTAA 431
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GR SG+A + +
Sbjct: 461 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLN-QQGRLSGDAFIQMTS 519
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV-GGSGFSRS 143
E A+ A + + ++ RY+E+ S+ V G SRS
Sbjct: 520 AERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGTLSRS 562
>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta]
gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]
Length = 892
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 SKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|195488502|ref|XP_002092343.1| GE14142 [Drosophila yakuba]
gi|194178444|gb|EDW92055.1| GE14142 [Drosophila yakuba]
Length = 889
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 SKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGSRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus]
Length = 521
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V EK++++F +P+ PV + I +G +G V ++ E+ +A+ +
Sbjct: 293 YTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 352
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F +P
Sbjct: 353 RDYMGGRYIEVFREKQAP 370
>gi|195334671|ref|XP_002034000.1| GM20128 [Drosophila sechellia]
gi|194125970|gb|EDW48013.1| GM20128 [Drosophila sechellia]
Length = 885
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 375 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 434
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 435 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 486
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 270 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 329
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 330 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 364
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNG 90
RP AG E + P +TV +RG PF V EK++++F +P+ PV + I +G
Sbjct: 273 RPQEAAGKVEKPASQKEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHG 330
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL--NSSSPRGG 134
+G V ++ E+ +A+ +R + RYIE+F +S+ RG
Sbjct: 331 NKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGA 376
>gi|195381217|ref|XP_002049351.1| GJ21539 [Drosophila virilis]
gi|194144148|gb|EDW60544.1| GJ21539 [Drosophila virilis]
Length = 982
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYV--------DINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA D+
Sbjct: 382 IRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDSS 441
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 442 KALGRHRESIGQRYIELFRSTTA 464
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGSRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|290977130|ref|XP_002671291.1| predicted protein [Naegleria gruberi]
gi|284084859|gb|EFC38547.1| predicted protein [Naegleria gruberi]
Length = 666
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 19/93 (20%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV-------------------PVYVDINYKNGRPSGEAD 97
+ MR +PF E +I FFS + VY +N NG+ +GE
Sbjct: 264 LKMRNVPFSATEDEIETFFSGLTIATVQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEVF 323
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V F H+ +QA +++ IR+RYIELF +S S
Sbjct: 324 VEFTCHDQMLQAAKRNKEKIRNRYIELFHSSIS 356
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV----VPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
T+ MRGLPF EK+I +FF+ + +++K R +G + F T +A +A +
Sbjct: 586 TLKMRGLPFSSTEKEIAEFFAGYDFEEDSIRFKMDFKRNRQTGICYIRFRTKTEAERAAN 645
Query: 112 -KDRTNIRHRYIELF 125
++R NI RYIELF
Sbjct: 646 ERNRCNIGDRYIELF 660
>gi|355686618|gb|AER98119.1| epithelial splicing regulatory protein 2 [Mustela putorius furo]
Length = 650
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF +D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 284 LRLRGLPFSAGPEDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 343
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 344 RRHKGILGKRYIELFRSTAA 363
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 393 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 451
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV-GGSGFSRS 143
E A+ A + ++ RY+E+ S+ V G SRS
Sbjct: 452 AERALAAAQGCHKKVMKERYVEVVPCSTEEMSRVLMGGTLSRS 494
>gi|291390369|ref|XP_002711679.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oryctolagus cuniculus]
Length = 719
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 352 LRLRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 411
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 412 RRHKGMLGKRYIELFRSTAA 431
Score = 42.0 bits (97), Expect = 0.083, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHE 104
G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + + E
Sbjct: 463 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSAE 521
Query: 105 DAMQAMSKDRTNI-RHRYIELFLNSSSPR------GGVGGSGFS 141
A+ A + + + RY+E+ S+ G +G SG S
Sbjct: 522 RALAAAQRSHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 565
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNG 90
RP AG E + P +TV +RG PF V EK++++F +P+ PV + I +G
Sbjct: 273 RPQEAAGKVEKPASQKEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHG 330
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL--NSSSPRGG 134
+G V ++ E+ +A+ +R + RYIE+F +S+ RG
Sbjct: 331 NKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKQASAARGA 376
>gi|159164063|pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein F Homolog
Length = 118
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 34 GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINY 87
G GP G+ +V V +RGLP+ + +D+ +F S V V+ I
Sbjct: 7 GMMLGPEGGEGYV----------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYT 55
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ GR SGEA V + +D A+ KDR ++ HRYIE+F
Sbjct: 56 REGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93
>gi|297699056|ref|XP_002826613.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Pongo abelii]
Length = 717
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|114663263|ref|XP_511052.2| PREDICTED: epithelial splicing regulatory protein 2 isoform 2 [Pan
troglodytes]
Length = 717
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|324975474|gb|ADY62662.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 180
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 42 GDRWVNESSGPGHH-----------TVHMRGLPFRVNEKDIVDFFSP--VVPVYVD---- 84
G+ +VN + G H V MRGLP+ + +++FFS +V +D
Sbjct: 75 GEDFVNVAGGSNHEAQTFLSRGGQVIVRMRGLPYDCTPQQVIEFFSTGDIVCQVMDSEEG 134
Query: 85 ---INYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+ +GR +G+A V F T E A +A+ K R I RYIELF
Sbjct: 135 VLFVRKPDGRATGDAFVLFETEEMAGKALQKHRQVIGSRYIELF 178
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ +++DI FF + V + GR +GEA V F E A+ + + +
Sbjct: 3 RGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHKHH 62
Query: 117 IRHRYIELF 125
I RYIE++
Sbjct: 63 IGQRYIEVY 71
>gi|297699054|ref|XP_002826612.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Pongo abelii]
Length = 727
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
>gi|426382631|ref|XP_004057907.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 727
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
>gi|426382629|ref|XP_004057906.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Gorilla gorilla gorilla]
Length = 717
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|403290547|ref|XP_003936375.1| PREDICTED: epithelial splicing regulatory protein 2 [Saimiri
boliviensis boliviensis]
Length = 715
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 457 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 516 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
>gi|397487054|ref|XP_003814628.1| PREDICTED: epithelial splicing regulatory protein 2, partial [Pan
paniscus]
Length = 713
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 346 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 405
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 406 RRHKGMLGKRYIELFRSTAA 425
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 455 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 513
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 514 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 559
>gi|28849887|ref|NP_789808.1| epithelial splicing regulatory protein 2 [Mus musculus]
gi|81914552|sp|Q8K0G8.1|ESRP2_MOUSE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|21618665|gb|AAH31444.1| RNA binding motif protein 35b [Mus musculus]
gi|148679398|gb|EDL11345.1| RNA binding motif protein 35b [Mus musculus]
Length = 717
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRSEL 145
E A+ A + + ++ RY+E+ S+ V GGS SRS L
Sbjct: 518 VERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGS-LSRSGL 562
>gi|114663265|ref|XP_001167050.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1 [Pan
troglodytes]
Length = 727
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
>gi|45935393|ref|NP_079215.2| epithelial splicing regulatory protein 2 [Homo sapiens]
gi|20988380|gb|AAH30146.1| Epithelial splicing regulatory protein 2 [Homo sapiens]
gi|119603622|gb|EAW83216.1| RNA binding motif protein 35B, isoform CRA_c [Homo sapiens]
Length = 717
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|324509132|gb|ADY43846.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 192
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHE 104
+ES ++ V +RGLP+ N DI +FF V V +D + GRPSGEA V A+ E
Sbjct: 99 SESRYASNYVVRLRGLPYSANVDDIKEFFKGLDVADVVID-KEQGGRPSGEAFVRLASKE 157
Query: 105 DAMQAMSKDRTNIRHRY 121
A A+ + + N+ RY
Sbjct: 158 HAELALERSKNNMGSRY 174
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
P + + +RGLPF E D+ +F + + +GR SGE V + +A+
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 111 SKDRTNIRHRYIELFLNSSSP------RGGVGGSGFSRS 143
DR I RYIE+F S G + GSG S S
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGVIRGSGESES 101
>gi|74761482|sp|Q9H6T0.1|ESRP2_HUMAN RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|10438126|dbj|BAB15173.1| unnamed protein product [Homo sapiens]
gi|119603620|gb|EAW83214.1| RNA binding motif protein 35B, isoform CRA_a [Homo sapiens]
Length = 727
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
>gi|402908823|ref|XP_003917134.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Papio anubis]
Length = 725
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 358 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 417
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 418 RRHKGMLGKRYIELFRSTAA 437
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 467 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 525
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 526 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 571
>gi|402908821|ref|XP_003917133.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Papio anubis]
Length = 715
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 457 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 516 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
>gi|109128999|ref|XP_001098015.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 1
[Macaca mulatta]
Length = 715
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 408 RRHKGMLGKRYIELFRSTAA 427
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 457 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 516 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 561
>gi|426242551|ref|XP_004015136.1| PREDICTED: epithelial splicing regulatory protein 2 [Ovis aries]
Length = 591
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 224 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 283
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 284 RRHKGMLGKRYIELFRSTAA 303
Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 333 AAGSGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 391
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 392 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 437
>gi|296478109|tpg|DAA20224.1| TPA: fusilli-like [Bos taurus]
Length = 717
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|329664166|ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus]
Length = 717
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|194208736|ref|XP_001498922.2| PREDICTED: epithelial splicing regulatory protein 2-like [Equus
caballus]
Length = 659
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 292 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 351
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 352 RRHKGMLGKRYIELFRSTAA 371
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 401 AAGTERDCVRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLN-QQGRPSGDAFIQMTS 459
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 460 AERALGAAQRCHKKVMKERYVEVVPCSTDEMSRVLMGGTLGRSGMS 505
>gi|297284292|ref|XP_002802581.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 2
[Macaca mulatta]
Length = 725
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 358 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 417
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 418 RRHKGMLGKRYIELFRSTAA 437
Score = 39.7 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 467 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 525
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 526 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 571
>gi|449268059|gb|EMC78930.1| putative RNA-binding protein 19, partial [Columba livia]
Length = 922
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDA 106
E+S P HTV +RG+P + E+ I +FF P+ PV + I K G+ SG V + D
Sbjct: 294 ETSTP--HTVKLRGVPSNITEQKIREFFLPLKPVAIRIGKKARGKNSGYVFVDLKSEADM 351
Query: 107 MQAMSKDRTNIRHRYIELFLNSSSPR 132
+A+ + + + R IE+F S++P+
Sbjct: 352 QRALKRKKEYLGGRCIEVFRCSNTPK 377
>gi|355710319|gb|EHH31783.1| hypothetical protein EGK_12921, partial [Macaca mulatta]
Length = 688
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 321 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 380
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 381 RRHKGMLGKRYIELFRSTAA 400
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 430 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 488
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 489 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 534
>gi|339253438|ref|XP_003371942.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967723|gb|EFV52113.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 505
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV---VPV------YVDINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K I++FF V V + +N +GR +G+A V A+ EDA
Sbjct: 52 IRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEEDAQ 111
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK + I RYIELF ++S+
Sbjct: 112 KALSKHKEVIGSRYIELFRSTSA 134
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 39 PRPGDRWVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY----KN 89
P P N + PG V +RGLPF V D++ FF + +D + N
Sbjct: 405 PSPPVSPTNYFASPGQANQPPTPVLLRGLPFNVTPTDVLSFFQGFPEITMDCIHLQRAPN 464
Query: 90 GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126
G+ +GEA + F + +A +A+ + R +R IE+F+
Sbjct: 465 GQLNGEAIILFQSRMEAERAVIECSRQLFGNRPIEMFI 502
>gi|355756893|gb|EHH60501.1| hypothetical protein EGM_11873, partial [Macaca fascicularis]
Length = 635
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 268 LRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 327
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 328 RRHKGMLGKRYIELFRSTAA 347
Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 377 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 435
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ + + ++ RY+E+ S+ G +G SG S
Sbjct: 436 AERALATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 481
>gi|386768028|ref|NP_001246347.1| fusilli, isoform H [Drosophila melanogaster]
gi|383302505|gb|AFH08101.1| fusilli, isoform H [Drosophila melanogaster]
Length = 526
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 48 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 107
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 108 PKALGRHRESIGQRYIELFRSTTA 131
>gi|313244026|emb|CBY14896.1| unnamed protein product [Oikopleura dioica]
Length = 407
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V M GLP+R+ +I +FFSP+ V I K+GR +G A F + +D AM K++
Sbjct: 267 VKMSGLPYRITRGEIREFFSPIDLTDVRIEIGKDGRTTGNAFAAFFSDDDVWNAMQKNKQ 326
Query: 116 NIRHRYIELFLNSS 129
+ RY+EL+ S+
Sbjct: 327 MLGTRYVELYNKSA 340
>gi|301775691|ref|XP_002923260.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Ailuropoda melanoleuca]
gi|281349933|gb|EFB25517.1| hypothetical protein PANDA_012380 [Ailuropoda melanoleuca]
Length = 723
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 356 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 415
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 416 RRHKGILGKRYIELFRSTAA 435
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 465 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 523
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 524 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 569
>gi|73957227|ref|XP_851504.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Canis lupus familiaris]
Length = 717
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGILGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|410983807|ref|XP_003998228.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Felis catus]
Length = 717
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGILGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 518 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGLS 563
>gi|24653903|ref|NP_725480.1| fusilli, isoform A [Drosophila melanogaster]
gi|7303049|gb|AAF58117.1| fusilli, isoform A [Drosophila melanogaster]
Length = 557
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 48 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 107
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 108 PKALGRHRESIGQRYIELFRSTTA 131
>gi|410983809|ref|XP_003998229.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Felis catus]
Length = 726
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 359 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 418
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 419 RRHKGILGKRYIELFRSTAA 438
Score = 42.0 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 468 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 526
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 527 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGLS 572
>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 677
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF-----SPVVPVYVD----INYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF S V D + +GR +G+A V FA DA
Sbjct: 148 IRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQESDAS 207
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R +I RYIELF ++++
Sbjct: 208 KALSKHRESIGQRYIELFRSTTA 230
>gi|156401535|ref|XP_001639346.1| predicted protein [Nematostella vectensis]
gi|156226474|gb|EDO47283.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGE----ADVYFATHEDAMQAMS 111
V M GLPF +++D+ FF+ + +D+ +K+G+ G+ A V F ++ DA +A+
Sbjct: 18 VRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKSNNDASKALK 77
Query: 112 KDRTNIRHRYIEL 124
DR+ I HRYIEL
Sbjct: 78 MDRSYIGHRYIEL 90
>gi|440905418|gb|ELR55795.1| Epithelial splicing regulatory protein 2, partial [Bos grunniens
mutus]
Length = 759
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 392 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 451
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 452 RRHKGMLGKRYIELFRSTAA 471
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 501 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 559
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 560 AERALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 605
>gi|195442063|ref|XP_002068780.1| GK17961 [Drosophila willistoni]
gi|194164865|gb|EDW79766.1| GK17961 [Drosophila willistoni]
Length = 864
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF----SPVVPV-----YVDINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K ++DFF SP + + + +GR +G+A V FA DA
Sbjct: 397 IRMRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALEADAP 456
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 457 KALGRHRESIGQRYIELFRSTTA 479
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 292 GNCIVRARGLPWQSSDQDIAKFFCGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 351
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 352 LKRHKHHIGARYIEVYRASGEDFLAIAGGASNEAQ 386
>gi|395853861|ref|XP_003799417.1| PREDICTED: epithelial splicing regulatory protein 2 [Otolemur
garnettii]
Length = 715
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 348 LRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 407
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIE+F ++++
Sbjct: 408 RRHKGMLGKRYIEIFRSTAA 427
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 457 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 515
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 516 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLIGGTLGRSGMS 561
>gi|112491340|pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F
gi|297787485|pdb|2KFY|A Chain A, Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With
Agggau G- Tract Rna
Length = 136
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 105
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 106 KKDRESMGHRYIEVF 120
>gi|159486121|ref|XP_001701092.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158271986|gb|EDO97794.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 295
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 46 VNESSGP-GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
V GP G V +RGLPF V E DI F + PV + + ++GR SGEA V +
Sbjct: 18 VQGQIGPDGFPCVRLRGLPFDVMEGDI-KMFLELEPVDIVMVKRDGRFSGEAFVVVGNLQ 76
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
AM+K R I R+IE+F
Sbjct: 77 QVEAAMTKHRQFIGQRFIEIF 97
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLPF DI+ FF + P V + GRP+G A V F T + A
Sbjct: 200 LKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEVSMA 259
Query: 110 MSKDRTNIRHRYIELF 125
+KD+ + RY+E+F
Sbjct: 260 RAKDKQLMGTRYVEIF 275
>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 858
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV---------YVDINYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ KD++ FF + + +GR +G+A V FA +DA
Sbjct: 369 VRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDAP 428
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R I RYIELF ++++
Sbjct: 429 KALSKHRDLIGTRYIELFRSTTA 451
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEAD 97
PG W NE + V RGLP++ +++DI FF + + +GR +GEA
Sbjct: 253 PGICWKNEEVD-NNCVVRARGLPWQSSDQDIAKFFRGLNIAKGGVALCLSAHGRRNGEAV 311
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
V F E AM + + +I RYIE++ + V G S ++
Sbjct: 312 VRFVNQEHRDMAMKRHKHHIGSRYIEVYKANGEDFINVAGGNSSEAQ 358
>gi|444709335|gb|ELW50356.1| Epithelial splicing regulatory protein 2 [Tupaia chinensis]
Length = 848
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 481 LRLRGLPFSAGPTDVLGFLGPDCPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAAL 540
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 541 RRHKGMLGKRYIELFRSTAA 560
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 590 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 648
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 649 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 694
>gi|443682871|gb|ELT87306.1| hypothetical protein CAPTEDRAFT_189098 [Capitella teleta]
Length = 639
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF---SPVVPVY------VDINYKNGRPSGEADVYFATHEDAM 107
V MRGLP+ + +++FF V V + ++ +GR +G+A V FA +DA
Sbjct: 280 VRMRGLPYTCTAEQVLEFFRQGEQSVEVLDGDEGILFVHQADGRATGDAFVLFANDDDAT 339
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R +I RYIELF ++++
Sbjct: 340 RALSKHRESIGTRYIELFKSTTA 362
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEADVYFA 101
+V+++ P TV ++GLPF V DI+ FF + + D+ + +GR +GEA + F
Sbjct: 555 YVSQTQCPT--TVVIKGLPFNVQVADILAFFEGIYEMQPDVQVQRGSDGRLTGEAYITFG 612
Query: 102 THEDAMQAMS-KDRTNIRHRYIELFL 126
+ +A +A++ ++R I +R++E+F+
Sbjct: 613 SRSEAERAITERNRKVIGNRFVEMFM 638
Score = 42.0 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ RGLP++ +++DI FF + +I + GR +GEA + F + E A+ K + +
Sbjct: 183 IRARGLPWQSSDQDIARFFQGL-----NIANQQGRRNGEALIRFESKEHRDLALRKHKHH 237
Query: 117 IRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ RYIE++ S + G + ++
Sbjct: 238 LGQRYIEVYRASGKDFLNIAGGNNTEAQ 265
>gi|47226618|emb|CAG07777.1| unnamed protein product [Tetraodon nigroviridis]
Length = 183
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 74 FFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
FFSP+ + I + +GRPSGEADVYF H+DA+ AMS+DR +I
Sbjct: 117 FFSPLPVSKMLIEFGPDGRPSGEADVYFTRHQDAVAAMSRDRQHI 161
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V ++GLP+ D++ FFS V +++ +N + GRPSG A + ED +A
Sbjct: 7 IVQVKGLPWSCTADDLLKFFSECRIRDGVKGIHLTVN-RMGRPSGRAFIEMEHEEDVNKA 65
Query: 110 MSKDRTNIRHRYIE 123
+ K R + RY+E
Sbjct: 66 LEKHRQYLGPRYVE 79
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 38 GPRPGDRWVNESSG----PGH-------HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI- 85
G PG + E++G P +TV +RG PF V EK++ +F +P+ PV + I
Sbjct: 265 GAMPGSQRPQEATGKVEKPASKTEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIV 324
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G +G V ++ E+ +A+ +R + RYIE+F
Sbjct: 325 RNAHGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVF 364
>gi|328717324|ref|XP_001952255.2| PREDICTED: hypothetical protein LOC100163028 [Acyrthosiphon pisum]
Length = 819
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI-NYKNGRPSGEADVYFATH 103
N S + VH+RGLPF + DIV+FF ++P + I N GR A V F
Sbjct: 654 NGSKLDSDNCVHIRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG--AFVQFVNR 711
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNS 128
E+ +A+ K IR RYIE+F +S
Sbjct: 712 ENVEKALKKHMKKIRQRYIEVFRSS 736
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 37 AGPRPGDRWVNESSGPG-HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSG 94
+G R V S+ P TV +RG+PF V EK I +F +P+ P V I ++G +G
Sbjct: 270 SGDRENISKVKSSTEPTTEFTVKLRGVPFNVKEKQIREFMTPLKPAAVRIGKNESGNRTG 329
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V + E+ +A+ K++ I RYIE+F
Sbjct: 330 YVYVDLHSEEEVEKALKKNKDYIGGRYIEVF 360
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 59 MRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114
+R LP+ E+DI + FS P+ V I+ RP G A V + E+A+ A+++ D
Sbjct: 403 IRNLPYTCTEEDIKELFSKHGPLSDVLFPIDTLTKRPKGFAFVTYMIPENAVTALAQLDG 462
Query: 115 TNIRHRYIELFLN------SSSPRGGVGGSGFSRSE 144
+ R + L + S S GG G S + R +
Sbjct: 463 HIFQGRMLHLLPSTAKKEKSDSDAGGPGSSSYKRQK 498
>gi|324501689|gb|ADY40749.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 152
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP+ E++I FF P V I ++ RPSGEA V F +ED A+++
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 113 DRTNIRHRYIELFL 126
D+ ++ RYIE+++
Sbjct: 116 DKQHMGKRYIEVWI 129
>gi|300120417|emb|CBK19971.2| unnamed protein product [Blastocystis hominis]
Length = 378
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP------VYVDINYKN-GRPSGEADVYFATHEDAM 107
T+ +RGLP+ +++I FF+P+ VP + + I N RPSGEA V F++ ED+
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 108 QAMSKDRTNIRHRYIELF 125
+ + N+ RYIE+F
Sbjct: 318 KGLEYHLKNLGKRYIEIF 335
>gi|344290717|ref|XP_003417084.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Loxodonta africana]
Length = 717
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLAFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + RYIELF ++++
Sbjct: 410 RSXQGMLGKRYIELFRSTAA 429
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATH 103
+G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 460 AGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSA 518
Query: 104 EDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 519 ERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 563
>gi|195171791|ref|XP_002026687.1| GL11864 [Drosophila persimilis]
gi|194111613|gb|EDW33656.1| GL11864 [Drosophila persimilis]
Length = 830
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYV--------DINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF+ P +V + +GR +G+A V FA DA
Sbjct: 401 IRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANEGDAP 460
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 461 KALGRHRESIGQRYIELFRSTTA 483
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 296 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 355
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 356 LKRHKHHIGARYIEVYRASGEDFLAIAGGASNEAQ 390
Score = 35.0 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+SG + + +RGLP+ + I+ F V++ IN + G+PSGEA + +
Sbjct: 493 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDS 551
Query: 103 HEDAMQAMSKDRTNI-----RHRYIELFLNSSSPRGGVGG--SGFSRSELWAVH 149
+ A + + RYIE+F S VG +G +R+ + H
Sbjct: 552 EDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVGQRRTGLARATVLGAH 605
>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
Length = 910
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYV-DIN-------YKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF+ P +V D N +GR +G+A V FA DA
Sbjct: 401 IRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANEGDAP 460
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 461 KALGRHRESIGQRYIELFRSTTA 483
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 296 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 355
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 356 LKRHKHHIGARYIEVYRASGEDFLAIAGGASNEAQ 390
>gi|355715636|gb|AES05391.1| RNA binding motif protein 19 [Mustela putorius furo]
Length = 823
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGH---------------HTVHMRGLPFRVNEKDIVDFFS 76
RPG AG G NE++G +TV +RG PF V EK++ +F +
Sbjct: 262 RPG--AGAARGSPSRNETAGVARAEADKPATQKEPTTPYTVKLRGAPFNVTEKNVTEFLA 319
Query: 77 PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
P+ PV + I +G +G V ++ E+ QA+ R + RYIE+F + P
Sbjct: 320 PLRPVAIRIVRNAHGNKTGYIFVDLSSEEEVKQALRCHREYMGGRYIEVFREKNVP 375
>gi|148667169|gb|EDK99585.1| mCG133010, isoform CRA_b [Mus musculus]
Length = 149
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>gi|158301007|ref|XP_320791.4| AGAP011722-PA [Anopheles gambiae str. PEST]
gi|157013433|gb|EAA00060.4| AGAP011722-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF-----SPVVPVYVD----INYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K ++DFF S V D + +GR +G+A V F DA
Sbjct: 308 IRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQDSDAS 367
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R +I RYIELF ++++
Sbjct: 368 KALSKHRESIGQRYIELFRSTTA 390
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G V RGLP++ +++DI FF + + GR +GEA V F + E A
Sbjct: 203 GTCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMA 262
Query: 110 MSKDRTNIRHRYIELF 125
+ + + +I +RYIE++
Sbjct: 263 LKRHKHHIGNRYIEVY 278
>gi|241999526|ref|XP_002434406.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497736|gb|EEC07230.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 1026
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V M+GLP+ +E D++ FFS ++ ++V+ ++ NGR +G V FA+ D AM+
Sbjct: 634 VVVMKGLPYSCSETDVLQFFSGLNILDLFVEHDH-NGRATGTGFVEFASKRDFDAAMNMH 692
Query: 114 RTNIRHRYIELFLNS 128
R + HRYIEL + +
Sbjct: 693 RRKMGHRYIELTVGT 707
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ M+ LP+ N DI +F + ++ G G+A + F+T EDA QAM +D
Sbjct: 5 IRMQNLPWAANSLDIRRYFQGLGIPEGGVHIVGGD-KGDAFIAFSTDEDARQAMERDAGK 63
Query: 117 IRHRYIELFLNSSS 130
I+ I+L L+S +
Sbjct: 64 IKEVRIKLLLSSRA 77
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
H V M GLP V ++DI DFFS V+P + I NG P+G A FA H D +A
Sbjct: 756 HTCVSMLGLPDTVTDRDIADFFSTQGVIPRAIHIMLGANGVPTGHAFAEFAAHADCERAF 815
Query: 111 SKDRTNIRHRYIEL 124
K+ ++ I L
Sbjct: 816 LKNGASLGPHTITL 829
>gi|118381178|ref|XP_001023750.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila]
gi|89305517|gb|EAS03505.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila
SB210]
Length = 570
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK--NGRPSGEADVYFATH 103
+N+ G V +RGLP+ E+DI FF + + I GRP GE V F
Sbjct: 375 LNKIVTEGAGVVRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAILGGRPGGECFVIFQNK 434
Query: 104 EDAMQAMSKDRTNIRHRYIELFL 126
+DA +A++ I +R+IE+FL
Sbjct: 435 DDAHKALNFHMEKIHNRFIEVFL 457
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAM 110
H + +RGLP+ E +I + + DI + G+ SGEA V + D +A+
Sbjct: 268 QHFIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVRVYSQLDKQEAL 327
Query: 111 SKDRTNIRHRYIELF 125
+ + R++E+F
Sbjct: 328 CYNLNKVEGRFVEIF 342
Score = 38.5 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK--------NGRPSGEADVYFATHEDAM 107
T+ + G+PF V ++ I++FF DIN + G+ SG A V F +A
Sbjct: 494 TLMVMGMPFSVTKQKILEFFKG-----FDINEREIHLLCSHTGKFSGSALVTFEDELEAQ 548
Query: 108 QAM-SKDRTNIRHRYIELF 125
+A+ +K+ + I +RY+ELF
Sbjct: 549 RALKTKNFSYIENRYLELF 567
>gi|402583247|gb|EJW77191.1| hypothetical protein WUBG_11899 [Wuchereria bancrofti]
Length = 82
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV---VPV----YVDINYKNGRPSGEADVYFATHEDAMQ 108
V MRGLP+ E I++FF+ V + +N +GRP+G+A V F E +
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 109 AMSKDRTNIRHRYIELF 125
A++K + I RYIELF
Sbjct: 62 ALTKHKRTIGTRYIELF 78
>gi|281203425|gb|EFA77625.1| hypothetical protein PPL_12232 [Polysphondylium pallidum PN500]
Length = 1794
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 49 SSGPGHH---------TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVY 99
SSG G+H TV +RGLP+ E I DFF + + I Y+ GRPSG A V
Sbjct: 1704 SSGGGNHKGDHDYSEFTVKLRGLPYSATEDSIADFFDGLGVTNIKIIYQRGRPSGLAYVS 1763
Query: 100 FATHEDAMQAMSKDRTNI 117
++ D QA+ +++ ++
Sbjct: 1764 LSSQYDYDQALKRNKNHM 1781
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDI-NYKNGRPSGEADVYFATH 103
+E G V +RG+P+ NE I DFF PV +P + I +G+ SGEA + F
Sbjct: 1143 DEFRSKGETFVLIRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSHGKQSGEAYIEFVDE 1202
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
+ A +A R +RHRYIE+
Sbjct: 1203 DAARKANDYHRKMMRHRYIEVL 1224
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 51 GPGHHT-----VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFA 101
G HH V +RGLP+ V D++ FFS + ++ +Y NGR +GE V F
Sbjct: 1240 GQHHHVLATKIVRLRGLPYNVTPADVISFFSGYAISGNNILIEKDY-NGRVTGEGFVEFV 1298
Query: 102 THEDAMQAMSK-DRTNIRHRYIELF 125
T E A A+ I RYIELF
Sbjct: 1299 TFETASSALKHLQHKAISSRYIELF 1323
>gi|170586440|ref|XP_001897987.1| RNA recognition motif. [Brugia malayi]
gi|158594382|gb|EDP32966.1| RNA recognition motif [Brugia malayi]
Length = 573
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ DI +FFS V +D GRPSGEA V AT E A A+ +
Sbjct: 109 VVRLRGLPYSATIDDIKEFFSGLEVADAVID-KEPGGRPSGEAFVRLATKEYAELALERS 167
Query: 114 RTNIRHRYIELFLNSS 129
+ + RY+E+F +S+
Sbjct: 168 KNYMGSRYVEVFRSSA 183
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V MRGLP+ V DI +FF P+ V + + Y + R SG+A V F+T +A +A+S+++
Sbjct: 275 VFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVTFSTMAEAREALSRNKN 334
Query: 116 NIRHR 120
N+ R
Sbjct: 335 NMGTR 339
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
P + + +RGLPF E+D FF NGR SGE V E +A
Sbjct: 3 PDTNYIRLRGLPFAAKEQDFFFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKEAQK 62
Query: 112 KDRTNIRHRYIELF 125
DR I RYIE+F
Sbjct: 63 LDRNEINGRYIEVF 76
>gi|119627576|gb|EAX07171.1| hCG1641872, isoform CRA_b [Homo sapiens]
Length = 410
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 61 GLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRH 119
GLP + + DI + FSP V V I +GR +G+ADV FAT E+A+ A S+DR R
Sbjct: 198 GLPCKATKSDIYNLFSPSNLVRVHIEMGPDGRVTGKADVEFATREEAVAATSRDRPTGRA 257
Query: 120 R 120
R
Sbjct: 258 R 258
>gi|74202595|dbj|BAE24862.1| unnamed protein product [Mus musculus]
Length = 171
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 11/78 (14%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSK 112
EA V FA+ E A +A+ K
Sbjct: 154 EAFVQFASQEIAEKALKK 171
>gi|24646109|ref|NP_731640.1| glorund, isoform C [Drosophila melanogaster]
gi|23171055|gb|AAN13533.1| glorund, isoform C [Drosophila melanogaster]
Length = 179
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
+ ED +A ++ ++ HRYIE+F +++P+
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF--TATPK 130
>gi|195124401|ref|XP_002006681.1| GI18454 [Drosophila mojavensis]
gi|193911749|gb|EDW10616.1| GI18454 [Drosophila mojavensis]
Length = 1008
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYV--------DINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF+ P +V + +GR +G+A V FA D+
Sbjct: 405 IRMRGLPYDCTPKQVLEFFTTGESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANESDSP 464
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 465 KALGRHRESIGQRYIELFRSTTA 487
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 300 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 359
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 360 LKRHKHHIGSRYIEVYRASGEDFLAIAGGASNEAQ 394
>gi|428170681|gb|EKX39604.1| hypothetical protein GUITHDRAFT_54250, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKDRT 115
+RGLP+ DI +FF + IN+ GRP+GEA V F T D +A+ +DR
Sbjct: 4 VRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMRDRD 63
Query: 116 NIRHRYIELFLNSSSPR 132
+ RY+E++ +S +
Sbjct: 64 LMNKRYVEVYPSSEDEK 80
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + DI FF + + + +N + R +GEA V F +A+
Sbjct: 108 VVKLRGLPYSITADDIRSFFGHLSIKEDGIIICLN-RERRNNGEAFVEFTDEYVVDEAVK 166
Query: 112 KDRTNIRHRYIELFLNSSS 130
KDR I RY+E+F +S +
Sbjct: 167 KDRQMIGSRYVEVFRSSKA 185
>gi|157129243|ref|XP_001655329.1| hypothetical protein AaeL_AAEL011420 [Aedes aegypti]
gi|108872264|gb|EAT36489.1| AAEL011420-PA [Aedes aegypti]
Length = 894
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-----VVPVYVD----INYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF+ V D + +GR +G+A V F+ DA
Sbjct: 369 IRMRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQETDAP 428
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R +I RYIELF ++++
Sbjct: 429 KALSKHRESIGQRYIELFRSTTA 451
Score = 38.9 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G V RGLP++ +++DI FF + + GR +GEA V F + E A
Sbjct: 264 GTCIVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMA 323
Query: 110 MSKDRTNIRHRYIELF 125
+ + + +I +RYIE++
Sbjct: 324 LKRHKHHIGNRYIEVY 339
>gi|401410426|ref|XP_003884661.1| GL11864, related [Neospora caninum Liverpool]
gi|325119079|emb|CBZ54631.1| GL11864, related [Neospora caninum Liverpool]
Length = 503
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFF-----SPVVPVYVDINYKNGRPSGEADVYFAT 102
+SS + +RGLP+ NE+ IV FF + ++P + I +GRPSGEA V F
Sbjct: 397 DSSNWSAQVLRLRGLPYSANEQHIVQFFNGFHMAAILPSTIPI---DGRPSGEAYVQFVD 453
Query: 103 HEDAMQA-MSKDRTNIRHRYIELFLNSSS 130
+A +A +K+ + R IELF +S
Sbjct: 454 AAEAFRAFQAKNGARMDKRMIELFPSSKQ 482
>gi|256090135|ref|XP_002581069.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232933|emb|CCD80288.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 338
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 102 HVVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKE 161
Query: 112 KDRTNIRHRYIELF 125
K I HRYIE+F
Sbjct: 162 KHMEKIGHRYIEIF 175
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI+ FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQG-SNGRSNGEAFIELESKDDKQKA 62
Query: 110 MSKDRTNIRHRYIELFLNSS 129
M+ ++ RYIE+F + S
Sbjct: 63 MAHHNQHLGRRYIEVFDSCS 82
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 2 YDANTTTTTTTGANR---------FGGGRGCFNNDRWNDRPGGFAGPRP---------GD 43
YDA + +G NR +G F + +N P GF GP P G
Sbjct: 226 YDAPPFSPNGSGPNRGPVPGRYAPYGRPPHVFGHPGYNSPPRGFEGPSPSKGSNFGPPGH 285
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY 87
++ H+V MRGLP+ ++DI F SP+ PV + + +
Sbjct: 286 YEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMRF 329
>gi|226487870|emb|CAX75600.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 278
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
H V +RGLP+ +K+I FF+ + P + + + GR +GEA V F + E +A
Sbjct: 102 HVVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKE 161
Query: 112 KDRTNIRHRYIELF 125
K I HRYIE+F
Sbjct: 162 KHMEKIGHRYIEIF 175
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI++FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQG-PNGRSNGEAFIELDSKDDKEKA 62
Query: 110 MSKDRTNIRHRYIELFLNSS 129
M+ ++ RYIE+F + S
Sbjct: 63 MAHHNEHMGRRYIEVFDSCS 82
>gi|407393563|gb|EKF26660.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi marinkellei]
Length = 454
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEA 96
PG + P H V +RG+P+ E+ I +FF+ V +P V++ N +N RP+GEA
Sbjct: 331 PGHPPMMAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQN-RPTGEA 389
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVG 136
V D + A+ ++ + +RYIE+F +S + +G
Sbjct: 390 FVELENDSDLVAALERNGGAMGNRYIEVFQSSVAAMQRLG 429
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYK-NGRPSGEADVYFATHE 104
+ G H + +RGLPF E+D+ +F V V VDI GR +G+A + AT E
Sbjct: 145 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRCVPGVTRVDICRDLEGRNTGDAFIQLATEE 204
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
D +A + RYIE+ ++ R +
Sbjct: 205 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAI 235
>gi|407866924|gb|EKG08457.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEA 96
PG + P H V +RG+P+ E+ I +FF+ V +P V++ N +N RP+GEA
Sbjct: 327 PGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQN-RPTGEA 385
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V D + A+ ++ + +RYIE+F +S +
Sbjct: 386 FVELENDSDLVAALERNGGAMGNRYIEVFQSSVA 419
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINY-KNGRPSGEADVYFATHE 104
+ G H + +RGLPF E+D+ +F V V VDI GR +G+A + AT E
Sbjct: 141 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRSVPGVTRVDICRDMEGRNTGDAFIQLATEE 200
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
D +A + RYIE+ ++ R +
Sbjct: 201 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAI 231
>gi|71425877|ref|XP_813187.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878047|gb|EAN91336.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 448
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEA 96
PG + P H V +RG+P+ E+ I +FF+ V +P V++ N +N RP+GEA
Sbjct: 325 PGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQN-RPTGEA 383
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V D + A+ ++ + +RYIE+F +S +
Sbjct: 384 FVELENDSDLVAALERNGGAMGNRYIEVFQSSVA 417
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINY-KNGRPSGEADVYFATHE 104
+ G H + +RGLPF E+D+ +F S V V VDI GR +G+A + AT E
Sbjct: 139 QQEQGCKTHVLRLRGLPFTSTEEDLREFVSSVPGVTRVDICRDMEGRNTGDAFIQLATEE 198
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
D +A + RYIE+ ++ R +
Sbjct: 199 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAI 229
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ PV + I G +G V ++ E+ +A+ ++
Sbjct: 279 YTVKLRGAPFNVTEQNVKEFLVPLKPVAIRIARNTYGNKTGYVFVDLSSEEEVQKALKRN 338
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSR 142
+ + RYIE+F ++ + V SR
Sbjct: 339 KDYMGGRYIEVFRDNYTKSPSVQSKAESR 367
>gi|71649626|ref|XP_813529.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878421|gb|EAN91678.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEA 96
PG + P H V +RG+P+ E+ I +FF+ V +P V++ N +N RP+GEA
Sbjct: 327 PGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQN-RPTGEA 385
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V D + A+ ++ + +RYIE+F +S +
Sbjct: 386 FVELENDSDLVAALERNGGAMGNRYIEVFQSSVA 419
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINY-KNGRPSGEADVYFATHE 104
+ G H + +RGLPF E+D+ +F V V VDI GR +G+A + AT E
Sbjct: 141 QQEQGCKTHVLRLRGLPFTSTEEDLREFVRSVPGVTRVDICRDMEGRNTGDAFIQLATEE 200
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
D +A + RYIE+ ++ R +
Sbjct: 201 DVEEAKQLHNKTMGSRYIEVLPSTMYDRDAI 231
>gi|350396590|ref|XP_003484604.1| PREDICTED: hypothetical protein LOC100745803 [Bombus impatiens]
Length = 885
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ MRGLPF+ ++DI+DFFS +VP +++ +N +NG+P+GE F T ++A++A +
Sbjct: 652 CIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLN-QNGKPAGECFCEFDTADEALRATA 710
Query: 112 KD 113
K+
Sbjct: 711 KN 712
>gi|401395936|ref|XP_003879715.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
gi|325114122|emb|CBZ49680.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
Length = 246
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFF---SPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
T+ +RGL +R DI FF S P I +GRP+G A VYF T ++A +A
Sbjct: 140 TLRLRGLSYRATTDDIAQFFEGYSLAGPPEEAIQLHRRMDGRPTGWASVYFETEQEARRA 199
Query: 110 -MSKDRTNIRHRYIELFLN 127
K R+ + RYIE+F+N
Sbjct: 200 KQDKHRSYLHGRYIEIFIN 218
>gi|327282636|ref|XP_003226048.1| PREDICTED: probable RNA-binding protein 19-like isoform 2 [Anolis
carolinensis]
Length = 938
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ PV + I +G +G V F E+ +A+ ++
Sbjct: 292 YTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYVFVDFNNEEEVQKALKRN 351
Query: 114 RTNIRHRYIELFLNSSSPR 132
+ RYIELF S +
Sbjct: 352 HEYMGGRYIELFYEEHSKK 370
>gi|221483341|gb|EEE21660.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 508
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-----SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ NE+ IV FF + ++P + I +GRPSGEA V F +A++A
Sbjct: 409 QVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGRPSGEAYVQFVDAAEALRA 465
Query: 110 -MSKDRTNIRHRYIELFLNSSS 130
+K+ + R IELF +S
Sbjct: 466 FQAKNGGRMDKRMIELFPSSKQ 487
>gi|327282634|ref|XP_003226047.1| PREDICTED: probable RNA-binding protein 19-like isoform 1 [Anolis
carolinensis]
Length = 945
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ PV + I +G +G V F E+ +A+ ++
Sbjct: 292 YTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNKTGYVFVDFNNEEEVQKALKRN 351
Query: 114 RTNIRHRYIELFLNSSSPR 132
+ RYIELF S +
Sbjct: 352 HEYMGGRYIELFYEEHSKK 370
>gi|340716874|ref|XP_003396916.1| PREDICTED: hypothetical protein LOC100648364 [Bombus terrestris]
Length = 885
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ MRGLPF+ ++DI+DFFS +VP +++ +N +NG+P+GE F T ++A++A +
Sbjct: 652 CIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLN-QNGKPAGECFCEFDTADEALRATA 710
Query: 112 KD 113
K+
Sbjct: 711 KN 712
>gi|237839439|ref|XP_002369017.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211966681|gb|EEB01877.1| RRM domain-containing protein [Toxoplasma gondii ME49]
Length = 513
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-----SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ NE+ IV FF + ++P + I +GRPSGEA V F +A++A
Sbjct: 414 QVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGRPSGEAYVQFVDAAEALRA 470
Query: 110 -MSKDRTNIRHRYIELFLNSSS 130
+K+ + R IELF +S
Sbjct: 471 FQAKNGGRMDKRMIELFPSSKQ 492
>gi|221507828|gb|EEE33415.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 510
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 55 HTVHMRGLPFRVNEKDIVDFF-----SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ NE+ IV FF + ++P + I +GRPSGEA V F +A++A
Sbjct: 411 QVLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPI---DGRPSGEAYVQFVDAAEALRA 467
Query: 110 -MSKDRTNIRHRYIELFLNSSS 130
+K+ + R IELF +S
Sbjct: 468 FQAKNGGRMDKRMIELFPSSKQ 489
>gi|312094676|ref|XP_003148104.1| hypothetical protein LOAG_12543 [Loa loa]
Length = 304
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHED 105
+S + V +RGLP+ DI +FFS V +D GRPSGEA V AT E
Sbjct: 116 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVIDKE-PGGRPSGEAFVRLATKEY 174
Query: 106 AMQAMSKDRTNIRHRYIELFLNSS 129
A A+ + + + RY+E+F +S+
Sbjct: 175 AELALERSKNYMGSRYVEVFRSSA 198
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD--------INYK--------NGRPSGE 95
P + + +RGLPF E+D+ DF + ++ +N K NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V E +A DR I RYIE+F
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVF 92
>gi|307197792|gb|EFN78921.1| RNA-binding protein 12 [Harpegnathos saltator]
Length = 885
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ MRGLPF+ ++DI+DFFS +VP +++ +N +NG+P+GE F T ++A++A +
Sbjct: 650 CIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMMLN-QNGKPAGECFCEFDTTDEALRATA 708
Query: 112 KD 113
K+
Sbjct: 709 KN 710
>gi|195056424|ref|XP_001995099.1| GH22967 [Drosophila grimshawi]
gi|193899305|gb|EDV98171.1| GH22967 [Drosophila grimshawi]
Length = 1007
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-VVPVYV--------DINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K +++FF+ P +V + +GR +G+A V FA D+
Sbjct: 382 IRMRGLPYDCTPKQVLEFFTTGESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANECDSS 441
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+ + R +I RYIELF ++++
Sbjct: 442 KALGRHRESIGQRYIELFRSTTA 464
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F + E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGSRYIEVYRASGEDFLAIAGGASNEAQ 371
>gi|393910110|gb|EJD75743.1| RNA recognition domain-containing protein [Loa loa]
Length = 674
Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ DI +FFS V +D GRPSGEA V AT E A A+ + +
Sbjct: 125 VRLRGLPYSATIDDIKEFFSGLEVADAVID-KEPGGRPSGEAFVRLATKEYAELALERSK 183
Query: 115 TNIRHRYIELFLNSS 129
+ RY+E+F +S+
Sbjct: 184 NYMGSRYVEVFRSSA 198
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V MRGLP+ V DI +FF P+ V + + Y + R SG+A V F+T +A +A+S+++
Sbjct: 290 VFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVSFSTMAEAREALSRNKN 349
Query: 116 NIRHR 120
N+ R
Sbjct: 350 NMGTR 354
Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV--------DINYK--------NGRPSGE 95
P + + +RGLPF E+D+ DF + ++ +N K NGR SGE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP------RGGVGGSG 139
V E +A DR I RYIE+F S + G + GSG
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSG 112
>gi|340382973|ref|XP_003389992.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 660
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-INYKNGRPSGEADVYFATHEDAMQAMSKD 113
HT+ MRGLP+ +EK + FFSP+ + + R SG A V + D +AM ++
Sbjct: 271 HTIRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSKTDLKEAMKRN 330
Query: 114 RTNIRHRYIELFLNSSS 130
+ + RYIEL +++ S
Sbjct: 331 KGRMGRRYIELVVDTGS 347
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG+PF V E+ I +F +P+ P + I ++G+ +G V + E+ +A+ K++
Sbjct: 289 TVKLRGVPFSVKEQQIKEFMTPLRPAAIRIGKNESGQRTGYVYVDLHSEEEVNKALKKNK 348
Query: 115 TNIRHRYIELF 125
I RYIE+F
Sbjct: 349 DYIGGRYIEVF 359
Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 59 MRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114
+R LP+ E+DI + FS P+ V I+ +P G A V + E+A+ A+++ DR
Sbjct: 402 VRNLPYTCTEEDIRELFSKHGPLSEVLFPIDNLTKKPKGFAFVTYMIPENAVTALAQLDR 461
Query: 115 TNIRHRYIELFLNS-------SSPRGGVGGSGFSRSE 144
+ R + L ++ SS GG G S + R +
Sbjct: 462 HVFQGRMLHLLPSTVKKENPESSDAGGPGSSSYKRQK 498
>gi|340382975|ref|XP_003389993.1| PREDICTED: probable RNA-binding protein 19-like [Amphimedon
queenslandica]
Length = 866
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-INYKNGRPSGEADVYFATHEDAMQAMSKD 113
HT+ MRGLP+ +EK + FFSP+ + + R SG A V + D +AM ++
Sbjct: 246 HTIRMRGLPYDASEKHVHKFFSPIQLSNIRLLKDDRERCSGLAFVDVMSETDLKEAMKRN 305
Query: 114 RTNIRHRYIELFLNSSS 130
+ + RYIEL +++ S
Sbjct: 306 KGRMGRRYIELVVDTGS 322
>gi|300122335|emb|CBK22907.2| unnamed protein product [Blastocystis hominis]
Length = 546
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP------VYVDINYKNG-RPSGEADVYFATHEDAM 107
T+ +RGLP+ +++I FF+P+ VP + + I N RPSGEA V F++ ED+
Sbjct: 435 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSA 494
Query: 108 QAMSKDRTNIRHRYIELF 125
+ + N+ RYIE+F
Sbjct: 495 KGLEYHLKNLGKRYIEIF 512
>gi|302852446|ref|XP_002957743.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
gi|300256919|gb|EFJ41175.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
Length = 241
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G V +RGLPF V E DI F + V + + ++GR SGEA V + + A+SK
Sbjct: 33 GFPCVRLRGLPFDVMEGDI-KMFLELETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSK 91
Query: 113 DRTNIRHRYIELFLNSS 129
R I R+IE+F +S
Sbjct: 92 HRQFIGQRFIEIFPSSK 108
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP-------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLPF DI+ FF + P V + GRP+G A V F T ++A A
Sbjct: 146 LKLRGLPFAAVPDDIIAFFDDGTLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPQEASIA 205
Query: 110 MSKDRTNIRHRYIELF 125
SKD+ + RY+E+F
Sbjct: 206 RSKDKGLMGTRYVEIF 221
>gi|256087258|ref|XP_002579790.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350644185|emb|CCD61054.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1009
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-------VDINYKNGRPSGEADVYFATHE 104
P + MRGLP+ + IV F ++ + + +N +GR +G+A V F T
Sbjct: 475 PNQTLIRMRGLPYTTTPEQIVRFLCILIKIVQFNANGILFVNKPDGRATGDAFVIFETKI 534
Query: 105 DAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRS-----ELWAVHTSE 152
A +A+ ++ +I RYIELF ++ + V S S + W H +E
Sbjct: 535 VAEKALENNKQHIGSRYIELFKSTPAEVNQVMNSILSSTCEEQIHCWNNHLTE 587
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ + +I FFS + I+ K GR +GEA + FA E A+ K
Sbjct: 376 VRARGLPWQATDLEIFQFFSGINIAKGGISLVLSKIGRRNGEALIQFADAEQQSLALRKH 435
Query: 114 RTNIRHRYIELFLNSSS 130
+ ++ RYIE++ + S
Sbjct: 436 KHHVGKRYIEVYAATGS 452
>gi|242017929|ref|XP_002429436.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514368|gb|EEB16698.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 766
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSP----VVPVY------VDINYKNGRPSGEADVYFAT 102
G + MRGLP+ + +++FF V + + +GR +G+A V F+
Sbjct: 293 GQVIIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSN 352
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSS 130
DA +A+SK R I RYIELF ++++
Sbjct: 353 ESDAPKALSKHRERIGSRYIELFRSTTA 380
>gi|402585392|gb|EJW79332.1| hypothetical protein WUBG_09760 [Wuchereria bancrofti]
Length = 236
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK--------NGRPSGEADVYFATH 103
P + + +RGLPF E+D+ DF + +N K NGR SGE V
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQVF---FFGLNAKSITFTLTSNGRASGECYVELDDQ 59
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNSSSP------RGGVGGSG 139
E +A DR I RYIE+F S + G + GSG
Sbjct: 60 EAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSG 101
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHED 105
+S + V +RGLP+ DI +FFS V +D GRPSGEA V AT E
Sbjct: 105 DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVADAVID-KEPGGRPSGEAFVRLATKEY 163
Query: 106 AMQAMSKDR 114
A A+ + +
Sbjct: 164 AELALERSK 172
>gi|90018164|gb|ABD83895.1| hypothetical protein [Ictalurus punctatus]
Length = 157
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV----YVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS + + Y + GRPSGEA V + ++ A+
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 68 KKDRETMGHRYVEVF 82
>gi|402594752|gb|EJW88678.1| hypothetical protein WUBG_00416 [Wuchereria bancrofti]
Length = 154
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
V MRGLP+ V DI +FF P+ V + + Y + R SG+A V F+T +A +A+S+++
Sbjct: 90 VFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVTFSTMAEAREALSRNKN 149
Query: 116 NI 117
N+
Sbjct: 150 NM 151
>gi|428185555|gb|EKX54407.1| hypothetical protein GUITHDRAFT_99887 [Guillardia theta CCMP2712]
Length = 1076
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPV-------VPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ V RGLPF E DIV FF V + +D RPSGEA V + ED
Sbjct: 688 YEVTCRGLPFSSTEDDIVTFFGECKNLEAGDVSILLD---ARQRPSGEATVKLRSVEDLH 744
Query: 108 QAMSKDRTNIRHRYIELF 125
A+S +R + RY+E+F
Sbjct: 745 AALSCNRNMMGERYVEVF 762
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ PV + I +G +G V F++ D +A+ +
Sbjct: 285 YTVKLRGAPFNVTEQNVREFLVPLKPVAIRIVRNAHGNKTGYVFVDFSSEGDVEKALKHN 344
Query: 114 RTNIRHRYIELFLNSSSPRGG 134
+ + RYIE+F PR G
Sbjct: 345 KEYMGGRYIEVF-REKGPRVG 364
>gi|148233440|ref|NP_001079497.1| uncharacterized protein LOC379184 [Xenopus laevis]
gi|27694912|gb|AAH43858.1| MGC53694 protein [Xenopus laevis]
gi|80477878|gb|AAI08882.1| MGC53694 protein [Xenopus laevis]
Length = 658
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 39 PRPGDRWVNESSGP----GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGR 91
PRP + NE + P G+ V + GLP+ +E D+ +FF DIN+ +NG
Sbjct: 133 PRPKYQG-NEGTMPLKENGYGYVFLNGLPYTADEHDVKEFFHGFD--VEDINFCVRQNGD 189
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
G+A V FAT +DA ++S+ + I HRYI L L++
Sbjct: 190 KDGKAYVKFATFQDAKASLSRHKEYIGHRYIFLKLSN 226
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G GEA + F T EDA +AMS
Sbjct: 4 VIRLQGLPLVAGSTDIRHFFSGLHIPEGGVHI-----TGGKHGEAFIIFPTDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
I+ I+LFL+S +
Sbjct: 59 CSGGFIKKSQIDLFLSSKA 77
>gi|328707990|ref|XP_001948909.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 571
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFF------SPVV---PVYVDINYKNGRPSGEADVYFATH 103
H V MRGLP+ KD++ FF S V+ + + +GR +G A V FA
Sbjct: 87 AHAIVRMRGLPYYCTAKDVITFFENGEQTSSVMYGEEGVLFVKKPDGRATGYAFVLFADE 146
Query: 104 EDAMQAMSKDRTNIRHRYIEL 124
+DA +A+SK R + RYIEL
Sbjct: 147 DDACKALSKHRDLMGTRYIEL 167
>gi|410562529|pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 69 KKDRETMGHRYVEVF 83
>gi|149052457|gb|EDM04274.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Rattus
norvegicus]
Length = 134
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|312091561|ref|XP_003147025.1| hypothetical protein LOAG_11458 [Loa loa]
Length = 88
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRT 115
+H GLP+ V DI +FF P+ V + + Y + R SG+A V F+T +A +A+S+++
Sbjct: 1 MHFSGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVSFSTMAEAREALSRNKN 60
Query: 116 NIRHRYI 122
N+ R I
Sbjct: 61 NMGTRTI 67
>gi|221054023|ref|XP_002261759.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808219|emb|CAQ38922.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 163
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF V E++I FF P+++ KN +P+G+A VYF E+A +A
Sbjct: 60 LKLRGLPFDVGEEEIKSFFKNFQLAKVGYPIHIIRGVKN-KPTGQAHVYFDDEEEARKAC 118
Query: 111 -SKDRTNIRHRYIELF 125
+ +R +R+RYIE++
Sbjct: 119 ETLNRKFLRNRYIEIY 134
>gi|47226530|emb|CAG08546.1| unnamed protein product [Tetraodon nigroviridis]
Length = 944
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG+PF V E+ I +F +P+ P + I + G +G V + E +A+ K++
Sbjct: 306 TVKLRGVPFNVKEQQIREFMTPLKPAAIRIGKNDSGNRTGYVYVDLHSEEQVEKALKKNK 365
Query: 115 TNIRHRYIELF 125
I RYIE+F
Sbjct: 366 DYIGGRYIEVF 376
>gi|324510500|gb|ADY44391.1| RNA-binding protein sym-2, partial [Ascaris suum]
Length = 603
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSP-------VVPVYVDINYKNGRPSGEADVYFATHED 105
G V MRGLP+ E I +FF+ + + +N +GRP+G+A V F
Sbjct: 270 GAMIVRMRGLPYDCTEAQIREFFASGDNGCTVMEGGILFVNKSDGRPTGDAFVMFDDEAA 329
Query: 106 AMQAMSKDRTNIRHRYIELFLNSSS 130
A++K + I RYIELF ++ +
Sbjct: 330 GQLALTKHKHTIGSRYIELFRSTQA 354
Score = 38.5 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V RGLP++ + D+ FF + P V + GR +GEA V F E A+ +
Sbjct: 173 VRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESEQRELALKRH 232
Query: 114 RTNIRHRYIELF 125
R + +RYIE++
Sbjct: 233 RHFLHNRYIEVY 244
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
T ++GLPFR E+ + +FFSP+ VDI + + R G A V FAT D A+ K
Sbjct: 397 TAKLQGLPFRCTEQQVREFFSPL--SVVDIRFLLDRRKRGKGVAFVDFATKRDYKAALKK 454
Query: 113 DRTNIRHRYIELF 125
R + R++E+
Sbjct: 455 HRQTLGPRFVEVL 467
>gi|383853070|ref|XP_003702047.1| PREDICTED: uncharacterized protein LOC100882770 [Megachile
rotundata]
Length = 886
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V MRGLPF+ ++DI+DFFS +VP +++ +N ++G+P+GE F T ++A++A +
Sbjct: 653 CVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLN-QSGKPAGECFCEFDTTDEALRATA 711
Query: 112 KD 113
K+
Sbjct: 712 KN 713
>gi|124802582|ref|XP_001347519.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23495101|gb|AAN35432.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 160
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 27 DRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF------SPVVP 80
D ++ P R ++N + +RGLPF +E++I +FF P
Sbjct: 27 DSFSSSPQKIMSVRNFSEYINIEEKINLPRLKLRGLPFDASEEEIKNFFRDFQLTKQAYP 86
Query: 81 VYVDINYKNGRPSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELF 125
+++ KN +P+G A VYF E+A A + +R IR R++E++
Sbjct: 87 IHIIKGIKN-KPTGHAYVYFDDEEEARNACQAMNRKYIRDRFVEIY 131
>gi|332022470|gb|EGI62777.1| RNA-binding protein 12 [Acromyrmex echinatior]
Length = 883
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V MRGLPF+ ++DI DFFS +VP+ + + + G+P+GE F + E A +A++K
Sbjct: 648 CVLMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITK 707
Query: 113 D 113
+
Sbjct: 708 N 708
>gi|71121745|gb|AAH99792.1| Hnrph1 protein [Rattus norvegicus]
Length = 184
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>gi|307110461|gb|EFN58697.1| hypothetical protein CHLNCDRAFT_20050, partial [Chlorella
variabilis]
Length = 81
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV-----YVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLPF +D++ FF V V V +GRP+GEA V E A++
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 112 KDRTNIRHRYIELFLNS 128
+ + I RYIE+F +S
Sbjct: 61 RHKDKIGTRYIEIFESS 77
>gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526]
Length = 302
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM-S 111
+ MRGLPF+ D+ +F V P V I +GRP+GEA V F T EDA+ A +
Sbjct: 89 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREA 148
Query: 112 KDRTNIRHRYIELFLNS 128
++ + +R+I+L+L S
Sbjct: 149 LNKQTMNNRWIDLYLAS 165
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 59 MRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+RG+P V E+++ FF+ V+ +Y+ +GR +GEA F + +D QAMS+
Sbjct: 199 LRGVPSTVTEEELFRFFAGLQVIGLYI-CRDSSGRATGEAYAEFGSLDDCQQAMSR 253
>gi|322790727|gb|EFZ15471.1| hypothetical protein SINV_06272 [Solenopsis invicta]
Length = 933
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+ MRGLPF+ ++DI DFFS +VP+ + + + G+P+GE F + E A +A++K
Sbjct: 694 CILMRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITK 753
Query: 113 D 113
+
Sbjct: 754 N 754
>gi|432909266|ref|XP_004078148.1| PREDICTED: RNA-binding protein 12B-like [Oryzias latipes]
Length = 631
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ V + GLPF V E I +FF + V + G+ +G+A V F T EDAM+A+ K
Sbjct: 131 YFVVFLNGLPFSVTENQICEFFKGLETNEIVLLKNHRGQNNGKAFVRFVTREDAMEALKK 190
Query: 113 DRTNIRHRYIEL 124
+ I RY+E+
Sbjct: 191 NMEYIGTRYVEV 202
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 39 PRPGDRWVNESSG----PGHH-----TVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY 87
PRP W N G P H V + LPF++ ++I DF ++P V + Y
Sbjct: 530 PRPPRDWGNGDHGSFGSPVQHFDGPTCVQLVNLPFQIKSEEIYDFCYGYHIIPGSVSLQY 589
Query: 88 -KNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126
++G P G A + F + ++A+ A+ + + I R IEL L
Sbjct: 590 DQSGNPKGSATLVFESRQEALTALRELNGRPIGPRKIELIL 630
>gi|312385573|gb|EFR30037.1| hypothetical protein AND_00606 [Anopheles darlingi]
Length = 1660
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF-----SPVVPVYVD----INYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ K ++DFF S V D + +GR +G+A V F D
Sbjct: 348 IRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQESDVN 407
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+A+SK R I RYIELF ++++
Sbjct: 408 KALSKHRELIGQRYIELFRSTTA 430
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G V RGLP++ +++DI FF + + GR +GEA V F + E A
Sbjct: 243 GTCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMA 302
Query: 110 MSKDRTNIRHRYIELF 125
+ + + +I RYIE++
Sbjct: 303 LKRHKHHIGSRYIEVY 318
>gi|213511062|ref|NP_001133976.1| probable RNA-binding protein 19 [Salmo salar]
gi|209156026|gb|ACI34245.1| Probable RNA-binding protein 19 [Salmo salar]
Length = 912
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-INYKNGRPSGEADV 98
+PG + E+ TV +RG PF V E+ + +F +P+ P + I G +G V
Sbjct: 266 KPGKQ--QETEPTPEFTVKLRGCPFNVKEQQVREFMTPLKPAAIRIIKNATGNKTGYIYV 323
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ E+ +A+ K++ + RYIE+F S G
Sbjct: 324 DMRSEEEVEKALKKNKDYMGGRYIEVFRTSVKGEG 358
>gi|125541750|gb|EAY88145.1| hypothetical protein OsI_09580 [Oryza sativa Indica Group]
Length = 226
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V + GLPF ++ DI FF + V +++KNG + EA V F + A A+ ++R N
Sbjct: 24 VRLLGLPFDCSDLDICKFFVGLDIVDCLLDHKNGCFTDEAFVVFPSAMQAEFALHRNRQN 83
Query: 117 IRHRYIELF 125
+ RY+E+F
Sbjct: 84 MGRRYVEVF 92
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ PV + I G +G V + E+ +A+ ++
Sbjct: 279 YTVKLRGAPFNVTEQNVREFLVPLKPVAIRIARNTYGNKTGYVFVDLNSEEEVQKALKRN 338
Query: 114 RTNIRHRYIELF 125
+ + RYIE+F
Sbjct: 339 KDYMGGRYIEVF 350
>gi|119618468|gb|EAW98062.1| RNA binding motif protein 19, isoform CRA_a [Homo sapiens]
gi|119618469|gb|EAW98063.1| RNA binding motif protein 19, isoform CRA_a [Homo sapiens]
Length = 777
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSK 112
H TV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+
Sbjct: 294 HTTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKC 353
Query: 113 DR 114
+R
Sbjct: 354 NR 355
>gi|226533389|ref|NP_001034357.2| RNA binding motif protein 19 [Gallus gallus]
Length = 957
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHED 105
E+S P HTV +RG P V E+ I +FFSP+ P+ + + KN G+ +G V + +
Sbjct: 302 EASTP--HTVKLRGAPLNVTEQKIREFFSPLKPLAIRMG-KNTQGKSTGFIFVDLKSEAE 358
Query: 106 AMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
+A+ + + I +Y+E+ ++P+ V
Sbjct: 359 VQKALKRKKEYIGGQYVEVSRCENAPKETV 388
>gi|222615465|gb|EEE51597.1| hypothetical protein OsJ_32850 [Oryza sativa Japonica Group]
Length = 340
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + A A+ ++R N
Sbjct: 224 VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQN 283
Query: 117 IRHRYIE 123
+ R+ +
Sbjct: 284 MGRRWYK 290
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF ++ DI FF + V + +KNGR +GEA V F + AMQA
Sbjct: 86 VRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPS---AMQA 135
>gi|449284118|gb|EMC90699.1| RNA-binding protein 12B [Columba livia]
Length = 698
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 20 GRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHT-VHMRGLPFRVNEKDIVDFFS-- 76
GR F N++ P G P P N S G H + ++ LPF+ +I+DFF
Sbjct: 591 GRMEFGNNKMGSFPEGRFMPDP-----NFSGGSEHGVPIRLKNLPFKATPNEILDFFYGY 645
Query: 77 PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+P V + Y K G PSG+A + +E+AM A+++
Sbjct: 646 RVIPESVCVQYNKQGLPSGDAIIAMTNYEEAMAAINE 682
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P +++RG+P+ E ++ FFS + V + I ++NG +G+ V FAT DA++ +
Sbjct: 171 PDDLYLYLRGIPYSATEDEVRAFFSGIHVDGVILIKHRNGLSNGDCLVKFATPGDALEGL 230
Query: 111 SKDRTNIRHRYIEL 124
+ R + R+IE+
Sbjct: 231 QRHRQYMGQRFIEI 244
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGR------PSGEADVYFATHEDAMQA 109
+ ++GLP DI FF + +N +G GEA + FAT EDA +A
Sbjct: 4 VIRLQGLPVVAGPADIRRFF-------LGLNIPDGGVHIIGGEIGEAFIIFATDEDARRA 56
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
MS I+ IELFL+S +
Sbjct: 57 MSCSGGFIKDSRIELFLSSKA 77
>gi|357144686|ref|XP_003573379.1| PREDICTED: uncharacterized protein LOC100836665 isoform 1
[Brachypodium distachyon]
Length = 606
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATH 103
N+S G G T+ M LPF + +FF+ V VD+ +++G P G A V FAT
Sbjct: 333 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEV-VDVRLATHEDGHPKGYAHVEFATA 391
Query: 104 EDAMQAMSKDRTNIRHRYIELFL---NSSSPRGGVGGS 138
EDA + + + + R + L L ++PR GGS
Sbjct: 392 EDAKKGLELNGQELMGRAVRLDLALERGATPRPRDGGS 429
>gi|432118737|gb|ELK38193.1| Epithelial splicing regulatory protein 1 [Myotis davidii]
Length = 596
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 296 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 355
Query: 111 SKDR 114
K +
Sbjct: 356 RKHK 359
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 378 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAYLAA 436
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 437 QKCHKKTMKDRYVEVFQCSA 456
>gi|449284112|gb|EMC90693.1| Epithelial splicing regulatory protein 1 [Columba livia]
Length = 529
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 251 VRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNAL 310
Query: 111 SKDR 114
K +
Sbjct: 311 KKHK 314
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG+A + + E A A
Sbjct: 369 IRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSAERAFLAA 427
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 428 QKCHKKTMKDRYVEVFQCSA 447
>gi|389582716|dbj|GAB65453.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 130
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF +E++I FF P+++ KN +P+G+A VYF E+A +A
Sbjct: 27 LKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIRGVKN-KPTGQAHVYFDDEEEARKAC 85
Query: 111 -SKDRTNIRHRYIELF 125
+ +R +R+RYIE++
Sbjct: 86 ETLNRKFLRNRYIEIY 101
>gi|156082065|ref|XP_001608525.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148801096|gb|EDL42501.1| RNA binding protein, putative [Plasmodium vivax]
Length = 181
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF +E++I FF P+++ KN +P+G+A VYF E+A +A
Sbjct: 78 LKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIRGVKN-KPTGQAHVYFDDEEEARKAC 136
Query: 111 -SKDRTNIRHRYIELF 125
+ +R +R+RYIE++
Sbjct: 137 ETLNRKFLRNRYIEIY 152
>gi|384253335|gb|EIE26810.1| hypothetical protein COCSUDRAFT_46239 [Coccomyxa subellipsoidea
C-169]
Length = 877
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 17/101 (16%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK---N 89
G P PG WV + MRGLP+ +D+V FF + I + +
Sbjct: 314 GLVDPFPG--WV----------LRMRGLPYGATAEDVVHFFEGIEIERGSAGIAFTCTPD 361
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
GRP GEA V F + + +A+ + + I RYIELF++S +
Sbjct: 362 GRPKGEAYVEFPSEDAQKEALKRHKNEIGDRYIELFVSSKA 402
>gi|301609832|ref|XP_002934459.1| PREDICTED: RNA-binding protein 12B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 683
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 39 PRPG-----DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGR 91
PRP D W + +G G+ V + GLP+ E D+ +FF VV ++ + +NG
Sbjct: 162 PRPKYQGKKDIWPLKDNGYGY--VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVR-QNGV 218
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
G A V F + +DA A+S+D I HRYI + L + GG R+E
Sbjct: 219 RDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAGGPTDERNE 271
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G GEA + FAT EDA +AMS
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHI-----TGGKIGEAFIIFATDEDARRAMS 82
Query: 112 KDRTNIRHRYIELFLNSSS 130
+ I+ IELFL+S +
Sbjct: 83 RSGGFIKKSRIELFLSSKA 101
>gi|301609834|ref|XP_002934460.1| PREDICTED: RNA-binding protein 12B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 659
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 39 PRPG-----DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGR 91
PRP D W + +G G+ V + GLP+ E D+ +FF VV ++ + +NG
Sbjct: 138 PRPKYQGKKDIWPLKDNGYGY--VFLYGLPYTAGELDVKEFFHGFNVVDLHFSVR-QNGV 194
Query: 92 PSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
G A V F + +DA A+S+D I HRYI + L + GG R+E
Sbjct: 195 RDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAGGPTDERNE 247
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHI-----TGGKIGEAFIIFATDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
+ I+ IELFL+S +
Sbjct: 59 RSGGFIKKSRIELFLSSKA 77
>gi|159485042|ref|XP_001700558.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158272198|gb|EDO98002.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 229
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVD-INYKNGRPSGEADVYF 100
+ +E G + + M+G+PF+ D+ FF+ + P V I + +GRP+G A + F
Sbjct: 145 KVFSEKFGDRYGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAFIEF 204
Query: 101 ATHEDAMQAMSKDRTNIRHRY 121
T ++A++AM KDR Y
Sbjct: 205 ETPQEAVRAMEKDRAKFGPEY 225
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSK 112
V M+GLPF+ +++DI+ FF+ + +V + + +GRP+GEA V F ++A +A K
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 113 DRTNIRH----RYIELF--LNSSSP 131
DR RY+ ++ L+S P
Sbjct: 95 DRETFGEKFGDRYVRVYPTLDSDIP 119
>gi|357144688|ref|XP_003573380.1| PREDICTED: uncharacterized protein LOC100836665 isoform 2
[Brachypodium distachyon]
Length = 557
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATH 103
N+S G G T+ M LPF + +FF+ V VD+ +++G P G A V FAT
Sbjct: 284 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEV-VDVRLATHEDGHPKGYAHVEFATA 342
Query: 104 EDAMQAMSKDRTNIRHRYIELFL---NSSSPRGGVGGS 138
EDA + + + + R + L L ++PR GGS
Sbjct: 343 EDAKKGLELNGQELMGRAVRLDLALERGATPRPRDGGS 380
>gi|302850710|ref|XP_002956881.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
gi|300257762|gb|EFJ42006.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
Length = 628
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
V M+GLPF+ ++DI+ FF+ V P V + + +GRP+GEA V F ++A +A KD
Sbjct: 30 VKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARRATQKD 89
Query: 114 RTNIRHRY 121
R ++
Sbjct: 90 RETFGEKF 97
Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G + M+G+PF+ D+ FF+ +++ +GRP+G A + F T ++A++A
Sbjct: 237 GEGVLKMKGIPFKATAVDVRKFFTGYKVKTEGVSFIMHADGRPTGMAFIEFETPQEAVRA 296
Query: 110 MSKDRTNIRHRYIELF 125
M KDR Y + F
Sbjct: 297 MEKDRAKFGPEYGDRF 312
>gi|343470599|emb|CCD16749.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 473
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAM 107
P + V +RG PF E+ I +FFS P V++ N +N R +GEA V + +D +
Sbjct: 369 PSAYVVRIRGAPFSATEEAIAEFFSGVRIPTQGVHMVYNEQN-RLTGEAFVEVESKDDVL 427
Query: 108 QAMSKDRTNIRHRYIELFLNSSSPRGGVG 136
A+ K+ + RYIE+F +S + +G
Sbjct: 428 LALRKNGGMMGTRYIEVFESSPAAMQRLG 456
>gi|224046497|ref|XP_002200032.1| PREDICTED: RNA-binding protein 12B isoform 1 [Taeniopygia guttata]
gi|449494411|ref|XP_004175301.1| PREDICTED: RNA-binding protein 12B isoform 2 [Taeniopygia guttata]
Length = 699
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 17 FGG-----GRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDI 71
FGG GR F N++ + P G P P +E P + ++ LPF+ +I
Sbjct: 584 FGGDSEPCGRMEFGNNKMGNFPEGRFMPDPNFSGGSERVVP----ILLKNLPFKATPNEI 639
Query: 72 VDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+DFF V+P V + Y + G PSG+A V +E+AM A+++
Sbjct: 640 LDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMAAINE 683
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P + +RG+P+ E ++ F S + V + I ++NG +G+ + AT DA++ +
Sbjct: 171 PDDRYLFLRGIPYSATEVEVRAFLSGIRVDGVILIKHRNGLNNGDCLIKCATPSDALEGL 230
Query: 111 SKDRTNIRHRYIEL 124
+ R + R+IE+
Sbjct: 231 KRHRQYMGQRFIEI 244
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGR------PSGEADVYFATHEDAMQA 109
+ ++GLP DI FF + +N +G GEA + FAT EDA +A
Sbjct: 4 VIRLQGLPVVAGPPDIRRFF-------LGLNIPDGGVHIIGGEIGEAFIIFATDEDARRA 56
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
MS I+ IELFL+S +
Sbjct: 57 MSCSGGFIKDSRIELFLSSKA 77
>gi|70945353|ref|XP_742505.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521527|emb|CAH76146.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 139
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF V+E +I +FFS P+++ K+ +P+G A VYF E+A A
Sbjct: 36 IKLRGLPFDVSEDEIKNFFSSFKLSNQKNPIHIIKGIKD-KPTGHAYVYFDDSEEARNAC 94
Query: 111 SK-DRTNIRHRYIELFLN 127
+R +R+RYIE++++
Sbjct: 95 QHLNRKFLRNRYIEIYID 112
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V E+++ +F P+ P+ + I +G +G V F + D +A+ ++
Sbjct: 281 YTVKLRGAPFNVTEQNVREFLLPLKPMAIRIVRNAHGNKTGYVFVDFNSEGDVEKALKRN 340
Query: 114 RTNIRHRYIELF 125
+ + RYIE+F
Sbjct: 341 KDYMGGRYIEVF 352
>gi|71896463|ref|NP_001026115.1| RNA-binding protein 12B [Gallus gallus]
gi|53136630|emb|CAG32644.1| hypothetical protein RCJMB04_31o3 [Gallus gallus]
Length = 698
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 17 FGG-----GRGCFNNDRWNDRPGGFAGPRP-----GDRWVNESSGPGHHTVHMRGLPFRV 66
FGG GR F N++ + P G P P DR V + ++ LPF+
Sbjct: 583 FGGDSKPFGRMEFGNNKMGNFPEGRFMPDPNFSGGSDRIV---------PIRLKNLPFKA 633
Query: 67 NEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+I+DFF V+P V + Y + G PSG+A V +E+AM A+++
Sbjct: 634 TPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINE 682
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 32 RPGGFAGPRPGDRWVNESSG--PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYK 88
R G P+ G + +S P + +RG+P+ E + DF S + V + I ++
Sbjct: 149 RQGDVGMPKSGYQSRKDSHAFNPDDLYLFLRGIPYSATEDAVRDFLSGIRVDGVILIKHR 208
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
NG +G V FAT DA++ + + R + R+IE+
Sbjct: 209 NGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEI 244
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FF + +P V++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII-----GGEMGEAFIIFATDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
I+ IELFL+S +
Sbjct: 59 CSGGFIKDSRIELFLSSKA 77
>gi|442746051|gb|JAA65185.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 141
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--------VVPVYVDINYKNGRPSGEADVYFATHEDAM 107
+ +RGLP+ +++I++FF+ + V++ ++ + GRPSGEA + + +D
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLS-REGRPSGEAYIELESEQDVE 65
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
+ + +I HRYIE+F + S
Sbjct: 66 VGLQRHNEHIGHRYIEVFKSKRS 88
>gi|326917887|ref|XP_003205226.1| PREDICTED: RNA-binding protein 12B-like [Meleagris gallopavo]
Length = 671
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 17 FGG-----GRGCFNNDRWNDRPGGFAGPRP-----GDRWVNESSGPGHHTVHMRGLPFRV 66
FGG GR F N++ + P G P P DR V + ++ LPF+
Sbjct: 556 FGGDSKPFGRMEFGNNKMGNFPEGRFMPDPNFSGGSDRIV---------PIRLKNLPFKA 606
Query: 67 NEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+I+DFF V+P V + Y + G PSG+A V +E+AM A+++
Sbjct: 607 TPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINE 655
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 32 RPGGFAGPRPGDRWVNESSG--PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYK 88
R G P+ G + +S P + +RG+P+ E + DF S + V + I ++
Sbjct: 149 RQGDVGMPKSGYQSRKDSHAFNPDDLYLFLRGIPYSATEDAVRDFLSGIRVDGVILIKHR 208
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
NG +G V FAT DA++ + + R + R+IE+
Sbjct: 209 NGLNNGNCLVKFATPGDALEGLKRHRQYMGQRFIEI 244
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FF + +P V++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII-----GGEIGEAFIIFATDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
I+ IELFL+S +
Sbjct: 59 CSGGFIKDSRIELFLSSKA 77
>gi|410923148|ref|XP_003975044.1| PREDICTED: probable RNA-binding protein 19-like [Takifugu rubripes]
Length = 941
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG+PF V E I +F +P+ P + I + G +G V + E A+ K++
Sbjct: 305 TVKLRGVPFNVKELQIREFMTPLKPAAIRIGKNDSGNRTGYVYVDLHSAEQVEAALKKNK 364
Query: 115 TNIRHRYIELFLNSSSPRG 133
I RYIE+F +S +
Sbjct: 365 DYIGGRYIEVFRVDNSEKA 383
>gi|226487872|emb|CAX75601.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 153
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI++FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQG-PNGRSNGEAFIELDSKDDKEKA 62
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
M+ ++ RYIE+F + S GS
Sbjct: 63 MAHHNEHMGRRYIEVFDSCSEELNNAMGS 91
>gi|363741413|ref|XP_003642489.1| PREDICTED: RNA-binding protein 12-like [Gallus gallus]
Length = 880
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 798 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 857
Query: 106 AMQAMS--KDRTNIRHRYIELFL 126
AM A+ DR I R ++L L
Sbjct: 858 AMAAVVDLNDRP-IGSRKVKLVL 879
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ GE V F D A+
Sbjct: 432 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 491
Query: 113 DRTNIRHRYIEL 124
+ I +R+I++
Sbjct: 492 HKQYIGNRFIQV 503
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMSK 112
V + G+PF E D+ +FF + + VD + GR +G V F + +D +A+ +
Sbjct: 306 VSIHGMPFSATESDVKEFF---LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKR 362
Query: 113 DRTNIRHRYIEL 124
+R + RY+E+
Sbjct: 363 NRMLMIQRYVEV 374
>gi|403372892|gb|EJY86355.1| hypothetical protein OXYTRI_15124 [Oxytricha trifallax]
Length = 635
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 59 MRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRT 115
+RGLPF+V DI FF V V I NG+ +G V+F E A QA +R
Sbjct: 556 LRGLPFQVQPDDITRFFKDYQVTKSDVVIEEINGKKTGFGLVFFKDQETAQQAQENMNRK 615
Query: 116 NIRHRYIEL 124
I +RY+E+
Sbjct: 616 KIGNRYVEI 624
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 19 GGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGP--GHHTVHMRGLPFRVNEKDIVDFFS 76
G +G FN+ R N R G R D ++ S + + +RGLPF + +I FFS
Sbjct: 408 GTQGEFNHLRQNRRGGSNEHER-ADPQIDFSKYDLNDYLGLKLRGLPFSIKRDEINQFFS 466
Query: 77 PVVPVYVDINYKNGRP-----SGEADVYFATHEDAMQAMSKDR-TNIRHRYIELF 125
YV + K GR +GE + F + ED+ +A + + +I HR+IEL+
Sbjct: 467 NF--NYVRDSVKLGRTGEGLLTGEGAILFHSEEDSKKAFQQRQGQSIGHRWIELY 519
>gi|226487874|emb|CAX75602.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 150
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYK------------NGRPSGEAD 97
V +RGLPF N DI++FF + V+ D + NGR +GEA
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
+ + +D +AM+ ++ RYIE+F + S GS
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNAMGS 104
>gi|46195836|ref|NP_996869.1| RNA-binding protein 12 [Gallus gallus]
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein [Gallus gallus]
Length = 887
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 798 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 857
Query: 106 AMQAMSKDRTNIRHRYIELFLNSSSPRGGV 135
AM A+ ++ R L NS S GV
Sbjct: 858 AMAAV----VDLNDRAYRLQENSKSSVLGV 883
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ GE V F D A+
Sbjct: 432 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 491
Query: 113 DRTNIRHRYIEL 124
+ I +R+I++
Sbjct: 492 HKQYIGNRFIQV 503
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMSK 112
V + G+PF E D+ +FF + + VD + GR +G V F + +D +A+ +
Sbjct: 306 VSIHGMPFSATESDVKEFF---LGLRVDAIHMLKDHVGRNNGNGLVKFFSPQDTFEALKR 362
Query: 113 DRTNIRHRYIEL 124
+R + RY+E+
Sbjct: 363 NRMLMIQRYVEV 374
>gi|38707995|ref|NP_944597.1| probable RNA-binding protein 19 [Danio rerio]
gi|32450902|gb|AAP82506.1| nil per os [Danio rerio]
Length = 926
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 290 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 349
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 350 DYMGGRYIEVF 360
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 291 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 350
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 351 DYMGGRYIEVF 361
>gi|60416093|gb|AAH90711.1| Rbm19 protein, partial [Danio rerio]
Length = 802
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 291 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 350
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 351 DYMGGRYIEVF 361
>gi|190337757|gb|AAI63877.1| RNA binding motif protein 19 [Danio rerio]
Length = 926
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 290 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 349
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 350 DYMGGRYIEVF 360
>gi|56753603|gb|AAW25004.1| SJCHGC02919 protein [Schistosoma japonicum]
gi|226487876|emb|CAX75603.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 137
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLPF N DI++FF +Y NGR +GEA + + +D +A
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQG-PNGRSNGEAFIELDSKDDKEKA 62
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
M+ ++ RYIE+F + S GS
Sbjct: 63 MAHHNEHMGRRYIEVFDSCSEELNNAMGS 91
>gi|358252891|dbj|GAA50442.1| epithelial splicing regulatory protein 1/2 [Clonorchis sinensis]
Length = 846
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 35 GFAGPRP--GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-------VDI 85
FAG + ++ + + P + MRGLP+ + +++FFS + +
Sbjct: 491 AFAGAETTEAEEFLKKFTSPYQALIRMRGLPYATTVQQVLEFFSNTDCAVQFGEEGVLFV 550
Query: 86 NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
N +NGR +G+A V F +A+ +I +RYIELF S+P
Sbjct: 551 NRRNGRATGDAFVIFENQAIGEKALQNHWQHIGNRYIELF--KSTP 594
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
H + RGLP++ + DI FFS + I+ K GR +GEA + F E A+
Sbjct: 409 HVIRARGLPWQATDLDIFHFFSGLNISNGGISLVLSKIGRRNGEALIRFTDQEQRDLALR 468
Query: 112 KDRTNIRHRYIELF 125
K + ++ RY+E++
Sbjct: 469 KHKHHMGQRYVEVY 482
>gi|74095965|ref|NP_001027829.1| swan [Takifugu rubripes]
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes]
Length = 889
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 18 GGGRGCF--NNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF 75
GG+ F ND +PGG N G V ++ +PF V +I+DFF
Sbjct: 781 AGGQQVFIPGNDGLLSQPGGTPN-------SNSQCAAGPTVVKLQNMPFTVTVDEIMDFF 833
Query: 76 S--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
VVP V + + + G P+GEA V F HE+A A+
Sbjct: 834 YGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAV 871
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
++++GLP+ ++K I +FF+ ++ + I Y NGR +GE + F T +D A+
Sbjct: 427 CIYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGA 486
Query: 113 DRTNIRHRYIEL 124
+ R+I++
Sbjct: 487 HMQYMGSRFIQV 498
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-HGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
+I+ + L L+S +
Sbjct: 63 SIKGSKVSLLLSSKT 77
>gi|444723044|gb|ELW63709.1| putative RNA-binding protein 19 [Tupaia chinensis]
Length = 1033
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++ +F +P+ PV + I +G +G V F + E+ +A+ +
Sbjct: 339 HTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNKTGYVFVDFNSEEEVKKALKCN 398
Query: 114 R 114
R
Sbjct: 399 R 399
>gi|242017923|ref|XP_002429433.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514365|gb|EEB16695.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 498
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFF---SPVVPVY------VDINYKNGRPSGEADVYFATHEDAM 107
+ MRGLP+ + K ++DFF ++ + + +GR +G+A V F +A+
Sbjct: 42 IRMRGLPYECSSKQVIDFFREGEQSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEAI 101
Query: 108 QAMSKDRTNIRHRYIELFLNSSS 130
A+SK + I RYIELF ++ +
Sbjct: 102 AALSKHKELIGTRYIELFRSTPA 124
>gi|19111953|ref|NP_595161.1| THO complex subunit (predicted) [Schizosaccharomyces pombe 972h-]
gi|12230839|sp|Q9URV0.1|YBLC_SCHPO RecName: Full=Uncharacterized RNA-binding protein C106.12c
gi|5817278|emb|CAB53728.1| THO complex subunit (predicted) [Schizosaccharomyces pombe]
Length = 274
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK-DR 114
V + L ++V EKD++ F P+ V +NY + GR G DVYF T +DA A
Sbjct: 87 VRVENLHYQVLEKDVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 115 TNIRHRYIEL 124
TN++ I++
Sbjct: 147 TNLKGSEIQI 156
>gi|449299589|gb|EMC95602.1| hypothetical protein BAUCODRAFT_576806 [Baudoinia compniacensis
UAMH 10762]
Length = 511
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYK-NGRPSGEADVYFATHEDA 106
S GP T+++R LP+ +++D++D F+ + V +I + N R +G V FA EDA
Sbjct: 406 SGGPESDTIYVRNLPWSTSDQDLIDLFTTIAEVKRAEIKMETNLRSAGTGVVQFANQEDA 465
Query: 107 MQAMSK 112
A++K
Sbjct: 466 ASAIAK 471
>gi|432106419|gb|ELK32212.1| RNA-binding protein 12B [Myotis davidii]
Length = 954
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G A V FA+ DA + R+
Sbjct: 157 LFLRGLPYVVNEDDVRVFFSGLCVDGVIFLKHDDGRNNGHAMVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTSE 152
+ R+IE+ S GGS + S++ V T E
Sbjct: 217 YMGSRFIEVMQGSEQQWIDFGGSSVTESDI-PVRTEE 252
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 880 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYTEQGLPTGEAIVAMINYNEAMAAIK 937
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF D+ FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHIIGGE-MGEAFIIFATDEDARRAVSRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|209880052|ref|XP_002141466.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557072|gb|EEA07117.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 626
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFF-----SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
T+ ++GL F E D V FF + +VP+ I+ + + G+ + FATHEDA +A+
Sbjct: 530 TLRVKGLHFCNTEADFVSFFGGCQVTAIVPITSGIS--STKQFGQFYIKFATHEDAYKAL 587
Query: 111 -SKDRTNIRHRYIELF 125
SK+ I +Y+ELF
Sbjct: 588 KSKNFVLIEDQYVELF 603
>gi|357616005|gb|EHJ69949.1| hypothetical protein KGM_10362 [Danaus plexippus]
Length = 888
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRP-SGEADVYFATHEDAMQAMSKDRT 115
V + GLPF+ +KDI +FF P+VP + + G+ +G V F T ++ +A++KD+
Sbjct: 248 VKITGLPFKCKKKDIKEFFKPLVPFSIRLPLGKGKKLAGFCYVGFRTEKELNKALNKDKL 307
Query: 116 NIRHRYIEL 124
I + I +
Sbjct: 308 FIANHRIHV 316
>gi|149052455|gb|EDM04272.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Rattus
norvegicus]
Length = 96
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIE 123
KDR + HRY+E
Sbjct: 72 KKDRETMGHRYVE 84
>gi|196003222|ref|XP_002111478.1| hypothetical protein TRIADDRAFT_13868 [Trichoplax adhaerens]
gi|190585377|gb|EDV25445.1| hypothetical protein TRIADDRAFT_13868, partial [Trichoplax
adhaerens]
Length = 302
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ- 108
+ +RGLPF E DI +F + +++ IN + GRPSG+A + + EDA++
Sbjct: 220 CIRLRGLPFTATEPDITNFMGELADKIALNGIHLCINDR-GRPSGDAYIQMLSAEDAIKS 278
Query: 109 AMSKDRTNIRHRYIELF 125
A K R ++ R+IE+F
Sbjct: 279 AEKKHREHLGTRWIEVF 295
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY------VDINYKNGRPSGEADVYFATHED 105
P + ++GLP V D+V+FF V + + +GR +GE V F T E
Sbjct: 100 PEIALLRIKGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTTGEGYVAFKTPEI 159
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A A+ KD + + +IEL+
Sbjct: 160 ARSAIYKDYKIMANHHIELY 179
>gi|159468195|ref|XP_001692268.1| hypothetical protein CHLREDRAFT_189395 [Chlamydomonas reinhardtii]
gi|158278454|gb|EDP04218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 913
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 68 EKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
E DI FF+P + Y+ +GRPSG A F + E+A++A+SK+ I RY+ L
Sbjct: 631 EDDIRQFFAPYDLKGISFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLL 689
>gi|345479719|ref|XP_001600826.2| PREDICTED: epithelial splicing regulatory protein 2-like [Nasonia
vitripennis]
Length = 746
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ MRGLP++ ++DI+D++S + VP +++ +N +NG+P+GE F + E+A++A +
Sbjct: 499 CIIMRGLPYQTIDRDILDYYSDIGLVPHRIHMLLN-QNGKPAGECFCEFNSCEEAVRATA 557
Query: 112 KD 113
K+
Sbjct: 558 KN 559
>gi|449486103|ref|XP_004175453.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Taeniopygia
guttata]
Length = 1411
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 797 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 856
Query: 106 AMQAM 110
AM A+
Sbjct: 857 AMAAV 861
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 33 PGGFAGPR---PGDRWVNESSGPGHH--TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDI 85
P A PR P + + S P H V+++GLPF K ++DFF +V + I
Sbjct: 403 PPSQAHPRSKSPTGQKRSRSRSPHEHGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYI 462
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
Y NG+ GE V F D A+ + I +R+I++
Sbjct: 463 AYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQV 502
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD----INYKNGRPSGEADVYFATHEDAM 107
P V + G+PF E D+ DFF + + VD + GR +G V F + +D
Sbjct: 301 PDDLYVSVHGMPFTATESDVKDFF---LGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTF 357
Query: 108 QAMSKDRTNIRHRYIEL 124
+A+ ++R + RY+E+
Sbjct: 358 EALKRNRMLMIQRYVEV 374
>gi|62648675|ref|XP_232819.3| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
gi|109476143|ref|XP_001053414.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLPF DI FF + ++ G+ +GEA + FAT EDA +A+S+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V I Y + G P GEA V + +A+ A+
Sbjct: 769 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAAVK 826
>gi|109476157|ref|XP_001054639.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLPF DI FF + ++ G+ +GEA + FAT EDA +A+S+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 769 VKISNLPFKANSNEILDFFHGYKVIPGSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 826
>gi|221129839|ref|XP_002156393.1| PREDICTED: epithelial splicing regulatory protein 2-like [Hydra
magnipapillata]
Length = 489
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V +R LP+ V +I+ FF PV+ V I+Y ++GR SG+A + F DA A+
Sbjct: 413 RAVGIRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGSRDARDAVQ 472
Query: 112 K-DRTNIRHRYIELFL 126
+R N+ R +ELF
Sbjct: 473 ALNRKNLGRRKVELFF 488
>gi|149412787|ref|XP_001509129.1| PREDICTED: RNA-binding protein 12B-like [Ornithorhynchus anatinus]
Length = 692
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
Query: 33 PGGFAGPRPGDRWV---NESSGPGHHT-VHMRGLPFRVNEKDIVDFFS--PVVPVYVDIN 86
PGGF P R++ N S GPG T + +R LPF+ +I+DFF V+P V I
Sbjct: 594 PGGF----PEGRFLPDPNFSGGPGRITPIKIRNLPFKATVNEILDFFHGYRVIPESVSIQ 649
Query: 87 Y-KNGRPSGEADVYFATHEDAMQAMSKDRTNIR---HRYIELFL 126
+ G PSG+A V +++A+ A+ D N R R ++L L
Sbjct: 650 LNEQGLPSGDAIVAMTDYDEAVAAV--DELNDRPVGPRKVKLIL 691
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHIIGGE-IGEAFIIFATDEDARRAMSCSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ IELFL+S +
Sbjct: 63 FIKDSLIELFLSSKT 77
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + G+P+ V E ++ FFS + V + + + NGR +G+ V FAT DA+ + + R
Sbjct: 165 LFLHGMPYSVTEGEVHAFFSGLRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRH 224
Query: 116 NIRHRYIEL 124
+ R++E+
Sbjct: 225 YMGPRFVEI 233
>gi|395505306|ref|XP_003756983.1| PREDICTED: RNA-binding protein 12 [Sarcophilus harrisii]
Length = 1415
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 797 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 856
Query: 106 AMQAM 110
AM A+
Sbjct: 857 AMAAV 861
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F + D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|449265752|gb|EMC76898.1| RNA-binding protein 12, partial [Columba livia]
Length = 853
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 783 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 842
Query: 106 AMQAM 110
AM A+
Sbjct: 843 AMAAV 847
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ GE V F D A+
Sbjct: 417 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 476
Query: 113 DRTNIRHRYIEL 124
+ I +R+I++
Sbjct: 477 HKQYIGNRFIQV 488
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD----INYKNGRPSGEADVYFATHEDAMQAMSK 112
V + G+PF E D+ DFF + + VD + GR +G V F + +D +A+ +
Sbjct: 291 VSIHGMPFSATESDVKDFF---LGLRVDAVHMLKDHVGRNNGNGLVKFFSPQDTFEALKR 347
Query: 113 DRTNIRHRYIEL 124
+R + RY+E+
Sbjct: 348 NRMLMIQRYVEV 359
>gi|187953621|gb|AAI37621.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V I Y + G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|3970860|dbj|BAA34794.1| HRIHFB2091 [Homo sapiens]
Length = 376
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 290 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 349
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 350 SRDEATAAVIDLNDRP-IGSRKVKLVL 375
>gi|71067349|ref|NP_945195.1| RNA-binding protein 12B-B [Mus musculus]
gi|341941784|sp|Q66JV4.2|R12BB_MOUSE RecName: Full=RNA-binding protein 12B-B; AltName: Full=RNA-binding
motif protein 12B-B
gi|26348891|dbj|BAC38085.1| unnamed protein product [Mus musculus]
Length = 834
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V I Y + G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|334311305|ref|XP_001381494.2| PREDICTED: RNA-binding protein 12 [Monodelphis domestica]
Length = 1413
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 797 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 856
Query: 106 AMQAM 110
AM A+
Sbjct: 857 AMAAV 861
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F + D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNNGNGLVKFFSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|51467948|ref|NP_001003856.1| RNA-binding protein 12 [Danio rerio]
gi|31324618|gb|AAP48571.1| swan [Danio rerio]
gi|190336635|gb|AAI62473.1| RNA binding motif protein 12 [Danio rerio]
gi|190337822|gb|AAI62102.1| RNA binding motif protein 12 [Danio rerio]
Length = 876
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 15/96 (15%)
Query: 38 GPRPGDRWVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GR 91
GP PG GPG+ V ++ +PF V +I+DFF V+P V + + + G
Sbjct: 788 GPSPG--------GPGNSRPTIVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGL 839
Query: 92 PSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELFL 126
P+GEA V F +H++AM A M + I R +++ L
Sbjct: 840 PTGEAMVAFDSHDEAMAAVMDLNDRPIGARKVKITL 875
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRT 115
VH+ GLPF V E +I DFF + + + N GR SG A V F + ++ +A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAG 363
Query: 116 NIRHRYIEL 124
I RYIE+
Sbjct: 364 MIGQRYIEV 372
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGE 95
P G+R + S + V+++GLP+ K I +FF +V + I Y NGR +GE
Sbjct: 408 PSSGERARSRSPHKLDYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGE 467
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
V F D A+ + R+I++
Sbjct: 468 GFVEFRNEMDYKAALGCHMQYMGSRFIQV 496
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 58 HMRGLPFRVNEKDI------VDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA-- 109
H+ +P+ V +KD+ ++ F + V VD NG G+A V F + EDA++A
Sbjct: 537 HITNIPYNVTKKDVRLFLDGIELFEESLKVLVD---SNGNGLGQAIVQFKSDEDALKAER 593
Query: 110 MSKDRTNIRHRYIEL 124
+ + + N R ++ L
Sbjct: 594 LHRQKLNGRDAFVHL 608
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-HGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
+I+ + L L+S +
Sbjct: 63 SIKGSKVSLLLSSKT 77
>gi|172088112|ref|NP_082502.2| RNA-binding protein 12B-A [Mus musculus]
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full=RNA-binding protein 12B-A; AltName: Full=RNA-binding
motif protein 12B-A
Length = 836
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|403281161|ref|XP_003932066.1| PREDICTED: RNA-binding protein 12 [Saimiri boliviensis boliviensis]
Length = 1465
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+V+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 845 FVSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 904
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 905 SRDEATAAV 913
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|348588498|ref|XP_003480003.1| PREDICTED: RNA-binding protein 12B-like [Cavia porcellus]
Length = 850
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG + E+
Sbjct: 217 FMGSRFIEVMQGSERQWIEFGGDAIEKGEI 246
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 776 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 833
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGD-IGEAFIIFATDEDARRAICRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|29747798|gb|AAH50844.1| RNA binding motif protein 12B [Mus musculus]
Length = 836
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673678|gb|EDL05625.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673679|gb|EDL05626.1| mCG123728, isoform CRA_a [Mus musculus]
Length = 834
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 760 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 817
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|397502356|ref|XP_003821827.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan paniscus]
Length = 268
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQA 109
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 37 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMA 95
Query: 110 MSK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 96 AQKCHKKNMKDRYVEVFQCSA 116
>gi|431917851|gb|ELK17082.1| RNA-binding protein 12B [Pteropus alecto]
Length = 965
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 197 LFLRGLPYLVNENDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 256
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GGS ++
Sbjct: 257 FMGSRFIEVMQGSEQQWIEFGGSAIKEGDI 286
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 891 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 948
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGD-VGEAFIIFATDEDARRAISRSGG 103
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 104 FIKDSSVELFLSSKA 118
>gi|12851402|dbj|BAB29027.1| unnamed protein product [Mus musculus]
Length = 723
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 43 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 102
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 103 FMGSRFIEVMQGSEQQWIEFGGTA 126
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 649 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 706
>gi|47211266|emb|CAF91568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 823
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 26 NDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYV 83
ND ++P A P G V ++ +PF V +I+DFF VVP V
Sbjct: 725 NDGLLNQPAATANP-------TSQCAAGPTVVKLQNMPFTVTVDEIMDFFYGYQVVPGSV 777
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAM 110
+ + + G P+GEA V F HE+A A+
Sbjct: 778 CLQFSEKGLPTGEAMVAFQNHEEATAAV 805
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLP+ ++K I +FFS ++ + I Y NGR +GE + F T +D A+
Sbjct: 361 CVYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGA 420
Query: 113 DRTNIRHRYIEL 124
+ R+I++
Sbjct: 421 HMQYMGSRFIQV 432
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-HGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
+I+ + L L+S +
Sbjct: 63 SIKGSKVSLLLSSKT 77
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
VH++ LPF E DI FF + V + GR +G+A V F + +++ +A+ +
Sbjct: 230 VHLQNLPFTCTEMDIRHFFRGLGVDGVRFLKDAQGRHTGKASVKFFSPQESFEAVKRGGG 289
Query: 116 NIRHRYIEL 124
+ R+IE+
Sbjct: 290 MMGQRFIEI 298
>gi|357144691|ref|XP_003573381.1| PREDICTED: uncharacterized protein LOC100836665 isoform 3
[Brachypodium distachyon]
Length = 580
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI---NYKNGRPSGEADVYFATH 103
N+S G G T+ M LPF + +FF+ V VD+ +++G P G A V FAT
Sbjct: 306 NQSQGTGSKTLFMGNLPFSAEFGQVKEFFAEAGEV-VDVRLATHEDGHPKGYAHVEFATA 364
Query: 104 EDAMQAM-SKDRTNIRHRYIELFL---NSSSPRGGVGGS 138
EDA + + S + + R + L L ++PR GGS
Sbjct: 365 EDAKKVIVSLNGQELMGRAVRLDLALERGATPRPRDGGS 403
>gi|351713473|gb|EHB16392.1| RNA-binding protein 12B [Heterocephalus glaber]
Length = 959
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG + E+
Sbjct: 217 FMGSRFIEVMQGSEQQWIECGGDAVKKGEI 246
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 885 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 942
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGD-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|74136241|ref|NP_001028012.1| RNA-binding protein 12 [Macaca mulatta]
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|19070196|gb|AAL83753.1| SWAN [Macaca mulatta]
gi|355563178|gb|EHH19740.1| RNA-binding motif protein 12 [Macaca mulatta]
gi|355784534|gb|EHH65385.1| RNA-binding motif protein 12 [Macaca fascicularis]
gi|380808606|gb|AFE76178.1| RNA-binding protein 12 [Macaca mulatta]
gi|380808608|gb|AFE76179.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944626|gb|AFI35918.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944628|gb|AFI35919.1| RNA-binding protein 12 [Macaca mulatta]
Length = 932
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|19923345|ref|NP_006038.2| RNA-binding protein 12 [Homo sapiens]
gi|23510462|ref|NP_690051.1| RNA-binding protein 12 [Homo sapiens]
gi|311893287|ref|NP_001185767.1| RNA-binding protein 12 [Homo sapiens]
gi|312032348|ref|NP_001185769.1| RNA-binding protein 12 [Homo sapiens]
gi|353411938|ref|NP_001238775.1| RNA-binding protein 12 [Pan troglodytes]
gi|397523818|ref|XP_003831915.1| PREDICTED: RNA-binding protein 12 [Pan paniscus]
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|15215375|gb|AAH12787.1| RNA binding motif protein 12 [Homo sapiens]
gi|15559252|gb|AAH13981.1| RNA binding motif protein 12 [Homo sapiens]
gi|19070194|gb|AAL83752.1| SWAN [Homo sapiens]
gi|19070200|gb|AAL83755.1| SWAN [Homo sapiens]
gi|21666372|gb|AAM73682.1| swan [Homo sapiens]
gi|119596588|gb|EAW76182.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596590|gb|EAW76184.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596594|gb|EAW76188.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|123993635|gb|ABM84419.1| RNA binding motif protein 12 [synthetic construct]
gi|123999855|gb|ABM87436.1| RNA binding motif protein 12 [synthetic construct]
gi|168278717|dbj|BAG11238.1| RNA binding motif protein 12 [synthetic construct]
gi|193787298|dbj|BAG52504.1| unnamed protein product [Homo sapiens]
gi|410216986|gb|JAA05712.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410216988|gb|JAA05713.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260650|gb|JAA18291.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260652|gb|JAA18292.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297724|gb|JAA27462.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297726|gb|JAA27463.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410355577|gb|JAA44392.1| RNA binding motif protein 12 [Pan troglodytes]
Length = 932
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|12053991|emb|CAC20441.1| RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|20521648|dbj|BAA34485.2| KIAA0765 protein [Homo sapiens]
Length = 952
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 866 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 925
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 926 SRDEATAAVIDLNDRP-IGSRKVKLVL 951
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 451 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 510
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 511 HKQYMGNRFIQV 522
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 326 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 385
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 386 LMIQRYVEV 394
>gi|327269587|ref|XP_003219575.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ +R +P+ E DI+ FF + + + NG +G+ V FAT D + + +DR
Sbjct: 179 LFIRSMPYTATEDDIIAFFDGLQVDGMIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQY 238
Query: 117 IRHRYIELF 125
+RHR+I ++
Sbjct: 239 MRHRFIRIY 247
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 41 PGDRWVNESSGPGHH----TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPS 93
PG R++++S+ G + ++ +PFR +I+DFF ++P + I + G PS
Sbjct: 636 PGGRFMSDSNVSGSSNCFTLIKLKNIPFRATPNEILDFFHGYKIIPESLSIQHNQYGLPS 695
Query: 94 GEADVYFATHEDAMQAMSK--DRTNIRHRYIELFL 126
GEA + + +AM +++ DR I R I L L
Sbjct: 696 GEAVIALVNYNEAMAVVNELNDRP-IGQRKIRLTL 729
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FS + +P VY+ G GEA V F T EDA QAMS
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYI-----TGGEKGEAFVIFETDEDARQAMS 58
Query: 112 KDRTNIRHRYIELFLNSSSPRGGV 135
I++ I FL+S + V
Sbjct: 59 YSERYIKNSRIGCFLSSKTEMQNV 82
>gi|332248953|ref|XP_003273629.1| PREDICTED: RNA-binding protein 12-like isoform 7 [Nomascus
leucogenys]
Length = 932
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo sapiens]
Length = 954
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 868 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 927
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 928 SRDEATAAVIDLNDRP-IGSRKVKLVL 953
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 513 HKQYMGNRFIQV 524
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 388 LMIQRYVEV 396
>gi|189235137|ref|XP_001807432.1| PREDICTED: similar to RBD protein [Tribolium castaneum]
gi|270003801|gb|EFA00249.1| hypothetical protein TcasGA2_TC003078 [Tribolium castaneum]
Length = 840
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
T+ +RGLP+ +KDI F PV P + + K G A V F T +D +A+ KDR+
Sbjct: 225 TLKLRGLPYNSRKKDIKQFLKPVTPFSIRLPAK---IHGIAYVGFKTEKDYKKALLKDRS 281
Query: 116 NIRHRYIEL 124
I + I +
Sbjct: 282 FIAGKRISV 290
>gi|294891260|ref|XP_002773500.1| hypothetical protein Pmar_PMAR027959 [Perkinsus marinus ATCC 50983]
gi|239878653|gb|EER05316.1| hypothetical protein Pmar_PMAR027959 [Perkinsus marinus ATCC 50983]
Length = 755
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
H V + GLP V+E D++ PV V V + KNG G A V F T E A + M
Sbjct: 315 HQIVFVGGLPKDVDEHDLLSMIEPVQGDVVCDVKVVRKNGNSDGAAFVEFITPEQAQEFM 374
Query: 111 ----SKDRTNIRHRYIELFLNSSSPRGG 134
S + N+R R I L L+ P+
Sbjct: 375 KMYGSGQQANLRGRPIVLRLDWPKPQAA 402
>gi|184185561|gb|ACC68959.1| RNA-binding protein 12 (predicted) [Rhinolophus ferrumequinum]
Length = 946
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+S+
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALSRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 862 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 921
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 922 DEATAAVIDLNDRP-IGSRKVKLVL 945
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|307179523|gb|EFN67837.1| RNA-binding protein 12 [Camponotus floridanus]
Length = 873
Score = 42.7 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 59 MRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
MRGLPF+ ++DI DFFS +VP+ + + + G+P+GE F + E A +A++K+
Sbjct: 641 MRGLPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAIAKN 698
>gi|145552659|ref|XP_001462005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429842|emb|CAK94632.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYK-NGRPSG 94
P+ D+ ES + +RGLPF+ + D+++F + + + ++ NG +G
Sbjct: 211 NPQQKDQIQEESKPKQQFYLKIRGLPFQCTKSDLINFLEMPRLKKDMLTMKFQQNGLFTG 270
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V + ED + ++ + HRY+E+F
Sbjct: 271 EAYVQVNSIEDLEYLRTFHKSQMDHRYLEIF 301
>gi|193786713|dbj|BAG52036.1| unnamed protein product [Homo sapiens]
Length = 568
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 482 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 541
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 542 SRDEATAAVIDLNDRP-IGSRKVKLVL 567
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 67 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKAALCR 126
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 127 HKQYMGNRFIQV 138
>gi|49903191|gb|AAH76429.1| Rbm19 protein, partial [Danio rerio]
Length = 275
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 184 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 243
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 244 DYMGGRYIEVF 254
>gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
gi|55725003|emb|CAH89370.1| hypothetical protein [Pongo abelii]
Length = 761
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSS 130
+ R+IE+ S
Sbjct: 217 FMGSRFIEVMQGSEQ 231
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|348520489|ref|XP_003447760.1| PREDICTED: hypothetical protein LOC100697955 [Oreochromis
niloticus]
Length = 1432
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQA 109
G V ++ +PF V +I+DFF V+P V + + + G P+GEA V F +HE+A A
Sbjct: 822 GPTIVKLQNMPFTVTVDEIMDFFYGYQVLPGSVCLQFNEKGLPTGEAMVAFQSHEEATAA 881
Query: 110 -MSKDRTNIRHRYIELFLNSSS 130
M + I R +++ L+ S
Sbjct: 882 VMDLNDRPIGARKVKISLDCVS 903
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLP+ ++K I +FF +V + I Y NGR +GE + F + +D A+
Sbjct: 437 CVYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGA 496
Query: 113 DRTNIRHRYIEL 124
+ R+I++
Sbjct: 497 HMQYMGSRFIQV 508
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-HGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
+I+ + L L+S +
Sbjct: 63 SIKGSKVSLLLSSKT 77
>gi|344279911|ref|XP_003411729.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Loxodonta
africana]
Length = 936
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 852 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 911
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 912 DEATAAVIDLNDRP-IGSRKVKLIL 935
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|326517396|dbj|BAK00065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLPF + DI FFS + V + +KNGR SGEA V F + A A+ +++
Sbjct: 105 AVRLRGLPFDCEDVDISKFFSGLDIVDCLLVHKNGRFSGEAFVVFPSSMQAEFALHRNK 163
>gi|349804479|gb|AEQ17712.1| putative heterogeneous nuclear ribonucleoprotein h1 [Hymenochirus
curtipes]
Length = 154
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
GR +GEA V FA+ E A +A+ K + I HRYIE+F +S +
Sbjct: 9 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 50
>gi|148231978|ref|NP_001083138.1| RNA binding motif protein 12B [Xenopus laevis]
gi|37805207|gb|AAH60345.1| MGC68792 protein [Xenopus laevis]
Length = 654
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V + GLP+ +E D+ DFF VV V+ + NG G A V FA+ +DA ++S+D
Sbjct: 159 VFLCGLPYSTSELDVKDFFHGFHVVDVHFSVR-SNGARDGNAYVKFASVQDAKASLSRDY 217
Query: 115 TNIRHRYIELFLNS 128
I HR I + L++
Sbjct: 218 EYIGHRRIAVKLST 231
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G EA + FAT EDA +AM
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDGGVHI-----TGGKYAEAFIIFATDEDARRAMR 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
I+ IELFL+S +
Sbjct: 59 CSGGFIKKSQIELFLSSKA 77
>gi|344279913|ref|XP_003411730.1| PREDICTED: RNA-binding protein 12-like isoform 2 [Loxodonta
africana]
Length = 924
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 840 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 899
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 900 DEATAAVIDLNDRP-IGSRKVKLIL 923
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|66361862|ref|XP_627895.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
gi|46227584|gb|EAK88519.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
Length = 569
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 28 RWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP-------VVP 80
+ N P F + DR+ N S + +RGLP+ E +IV FF
Sbjct: 409 KQNQNPSIFNDNKIIDRYYNRS------VLRLRGLPWSTTEIEIVQFFISGGIYGLNASD 462
Query: 81 VYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNS 128
V++ I +N R SGEA + DA A +R I RYIE+F++S
Sbjct: 463 VFLGIT-ENQRASGEAWIILPHKCDAFDAQRILNRRVIGKRYIEVFISS 510
>gi|417405481|gb|JAA49451.1| Putative conserved secreted protein precursor [Desmodus rotundus]
Length = 976
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGS 138
+ R+IE+ S GGS
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGS 239
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYNEQGLPTGEAIVAMVNYNEAMAAIK 959
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|402580371|gb|EJW74321.1| hypothetical protein WUBG_14771, partial [Wuchereria bancrofti]
Length = 57
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 74 FFSPVVPVYVDINYKNG--RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
FF P+ P +D+ Y+ G RPSGEA V F D AM ++R + RY+EL
Sbjct: 1 FFQPLRPASIDVLYEYGTDRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 54
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFAT 102
+ E S + MRGLP+ + D+ FFS +VP + + + + GRPSG A V F++
Sbjct: 235 LAEGSEEETKVIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSS 294
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTSE 152
E+ A+ + I RYIE++ + ++ + S +++ H SE
Sbjct: 295 AEEVNNALQRHNGFIGSRYIEVYPSDANSLTAILASQAAKN----AHQSE 340
>gi|291388277|ref|XP_002710735.1| PREDICTED: RNA binding motif protein 12-like [Oryctolagus
cuniculus]
Length = 864
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S +GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEEQWIELGGNTIKEDDV 246
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 790 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAVVAMINYNEAMAAIK 847
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGG-DVGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 YIKDSSVELFLSSRA 77
>gi|284004917|ref|NP_001164804.1| RNA-binding protein 12 [Oryctolagus cuniculus]
gi|217038336|gb|ACJ76629.1| RNA binding motif protein 12 (predicted) [Oryctolagus cuniculus]
Length = 940
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 856 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 915
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 916 DEATAAVIDLNDRP-IGSRKVKLIL 939
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 433 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 492
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 493 KQYMGNRFIQV 503
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|194387896|dbj|BAG61361.1| unnamed protein product [Homo sapiens]
Length = 731
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 645 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 704
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 705 SRDEATAAVIDLNDRP-IGSRKVKLVL 730
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 230 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 289
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 290 HKQYMGNRFIQV 301
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 105 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 164
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 165 LMIQRYVEV 173
>gi|449016117|dbj|BAM79519.1| similar to heterogeneous nuclear ribonucleoprotein H3, isoform a
[Cyanidioschyzon merolae strain 10D]
Length = 642
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSP-----------------------VVPVYVDINYK 88
P V +RGLP+ +D+ ++ V+P + Y
Sbjct: 309 PVGSVVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFVYN 368
Query: 89 -NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
GR +GE V FA+ EDA + + K + HRYIE+FL+S
Sbjct: 369 HQGRKTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSS 409
>gi|354491414|ref|XP_003507850.1| PREDICTED: RNA-binding protein 12B-A-like [Cricetulus griseus]
Length = 850
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 166 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAVVKFASCIDASGGLKCHRS 225
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 226 FMGSRFIEVMQGSEQQWIEFGGNA 249
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V + LPF+ N +I+DFF V+P V I Y + G P GEA + + +A+ A+ +
Sbjct: 776 VKIMNLPFKANANEILDFFHGYKVIPDSVSIQYNEQGLPIGEAIIAMINYNEAIAAIKE 834
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 59 MRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIR 118
+ GLPF +I FF + ++ G+ GEA + FAT EDA +A+S+ I+
Sbjct: 17 LLGLPFIAGPGEIPHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGGFIK 75
Query: 119 HRYIELFLNSSS 130
+ELFL+S +
Sbjct: 76 DSSVELFLSSKA 87
>gi|21740240|emb|CAD39131.1| hypothetical protein [Homo sapiens]
Length = 663
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 577 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 636
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 637 SRDEATAAVIDLNDRP-IGSRKVKLVL 662
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 162 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 221
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 222 HKQYMGNRFIQV 233
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 37 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 96
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 97 LMIQRYVEV 105
>gi|211827892|gb|AAH27810.2| Rbm12 protein [Mus musculus]
Length = 368
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHE 104
SSG PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + +
Sbjct: 285 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 344
Query: 105 DAMQAM--SKDRTNIRHRYIELFL 126
+A A+ DR I R ++L L
Sbjct: 345 EATAAVIDLNDRP-IGSRKVKLVL 367
>gi|291407017|ref|XP_002719829.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Oryctolagus cuniculus]
Length = 1025
Score = 42.4 bits (98), Expect = 0.067, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNG 90
R G AG PG + PGH R P +K++++F +P+ PV + I +G
Sbjct: 257 RESGGAGQEPG-------AQPGH-----RRAPEARAQKNVLEFLAPLKPVAIRIVRNAHG 304
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
+G V F++ E+ +A+ +R + RYIE+F P
Sbjct: 305 NKTGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREKPVP 345
>gi|384253302|gb|EIE26777.1| hypothetical protein COCSUDRAFT_64653 [Coccomyxa subellipsoidea
C-169]
Length = 472
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVD----INYKNGRPSGEADVYFATHEDAMQ-AMS 111
+ +RG+PF + + DI FFS + D + +GRP+GEA V + ++ A++
Sbjct: 379 IKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVVGPDGRPTGEAYVEISGAGAKLRLALA 438
Query: 112 KDRTNI--RHRYIELFLNS 128
KDR + RYIE+F ++
Sbjct: 439 KDRQIMPGSSRYIEIFTST 457
>gi|327269511|ref|XP_003219537.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ +RG+P+ E DI+ FF + + + NG +G+ V FAT D + + +DR
Sbjct: 179 LFIRGMPYTATEGDILAFFDGLQVDGIIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQY 238
Query: 117 IRHRYIELF 125
+R+R+I ++
Sbjct: 239 MRNRFIRIY 247
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FS + +P VY+ G GEA V F T EDA QAMS
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYI-----TGGEKGEAFVIFETDEDARQAMS 58
Query: 112 KDRTNIRHRYIELFLNSSSPRGGV 135
I++ I FL+S + V
Sbjct: 59 YSERYIKNSRIGCFLSSKTEMQNV 82
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 35 GFAGPRPGDRWVNESSGPGHH----TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK 88
G G PG R++++S+ G + ++ +PF+ +I+DFF ++P + I +
Sbjct: 630 GARGNFPGGRFMSDSNVRGSSNCFTLIKLKNIPFQATPNEILDFFHGYKIIPESLSIQHN 689
Query: 89 N-GRPSGEADVYFATHEDAMQAMSK 112
G PSGEA + + +AM +++
Sbjct: 690 QYGLPSGEAVIALVNYNEAMAVVNE 714
>gi|350594874|ref|XP_003483994.1| PREDICTED: RNA-binding protein 12 isoform 1 [Sus scrofa]
gi|350594876|ref|XP_003483995.1| PREDICTED: RNA-binding protein 12 isoform 2 [Sus scrofa]
gi|350594878|ref|XP_003483996.1| PREDICTED: RNA-binding protein 12 isoform 3 [Sus scrofa]
Length = 933
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 849 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 908
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 909 DEATAAVIDLNDRP-IGSRKVKLVL 932
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
>gi|159163875|pdb|2CQP|A Chain A, Solution Structure Of The Rna Binding Domain Of
Rna-Binding Protein 12
Length = 98
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++A
Sbjct: 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 72
Query: 109 AM--SKDRTNIRHRYIELFLNS 128
A+ DR I R ++L L S
Sbjct: 73 AVIDLNDRP-IGSRKVKLVLGS 93
>gi|284519716|ref|NP_001165217.1| RNA-binding protein 12 [Equus caballus]
Length = 928
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 844 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 903
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 904 DEATAAVIDLNDRP-IGSRKVKLVL 927
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|51593298|gb|AAH80741.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VN+ D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNDDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V I Y + G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
>gi|417413254|gb|JAA52964.1| Putative rna binding protein rbm12/swan, partial [Desmodus
rotundus]
Length = 960
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 876 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 935
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 936 DEATAAVIDLNDRP-IGSRKVKLVL 959
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 513 HKQYMGNRFIQV 524
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 387
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 388 LMIQRYVEV 396
>gi|431894345|gb|ELK04145.1| RNA-binding protein 12 [Pteropus alecto]
Length = 899
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 815 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 874
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 875 DEATAAVIDLNDRP-IGSRKVKLVL 898
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|312032395|ref|NP_001185821.1| RNA-binding protein 12 [Bos taurus]
Length = 953
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 869 SSSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 928
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 929 DEATAAVIDLNDRP-IGSRKVKLVL 952
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|344246677|gb|EGW02781.1| RNA-binding protein 12 [Cricetulus griseus]
Length = 997
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 915 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 974
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 975 ATAAVIDLNDRP-IGSRKVKLVL 996
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+
Sbjct: 430 YCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALC 489
Query: 112 KDRTNIRHRYIEL 124
+ + + +R+I++
Sbjct: 490 RHKQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|395830118|ref|XP_003788182.1| PREDICTED: RNA-binding protein 12 [Otolemur garnettii]
Length = 1478
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 860 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 919
Query: 104 EDAMQAM 110
++A A+
Sbjct: 920 DEATAAV 926
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|125527839|gb|EAY75953.1| hypothetical protein OsI_03870 [Oryza sativa Indica Group]
Length = 312
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 36 FAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNG 90
A P+P S G + + GLP EK + ++FS V D+N K
Sbjct: 105 LAQPKPSAGGPQLSPGDQKRKIFVGGLPVSATEKKLKEYFSKFGEVNHAIVVTDLNTK-- 162
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWA 147
P G + FA+ E +A+ KDR + +++E+ L + P+ SG S+ + A
Sbjct: 163 MPRGFGFIQFASEESTARALKKDRHFLCGQWVEVSL--AMPKQQNAASGTSKLSVQA 217
>gi|426241394|ref|XP_004014576.1| PREDICTED: RNA-binding protein 12 isoform 1 [Ovis aries]
Length = 931
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 847 SSSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 906
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 907 DEATAAVIDLNDRP-IGSRKVKLVL 930
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|197215644|gb|ACH53036.1| RNA binding motif protein 12, isoform 1 (predicted) [Otolemur
garnettii]
Length = 1475
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 860 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 919
Query: 104 EDAMQAM 110
++A A+
Sbjct: 920 DEATAAV 926
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|12856908|dbj|BAB30825.1| unnamed protein product [Mus musculus]
Length = 408
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHE 104
SSG PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + +
Sbjct: 325 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 384
Query: 105 DAMQAM--SKDRTNIRHRYIELFL 126
+A A+ DR I R ++L L
Sbjct: 385 EATAAVIDLNDRP-IGSRKVKLVL 407
>gi|21104400|dbj|BAB93470.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 71
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 20/21 (95%)
Query: 110 MSKDRTNIRHRYIELFLNSSS 130
MSKDR N++HRYIELFLNS++
Sbjct: 1 MSKDRANMQHRYIELFLNSTT 21
>gi|169731516|gb|ACA64888.1| RNA binding motif protein 12 (predicted) [Callicebus moloch]
Length = 1465
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 845 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 904
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 905 SRDEATAAV 913
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|354477974|ref|XP_003501192.1| PREDICTED: RNA-binding protein 12 [Cricetulus griseus]
Length = 1463
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+
Sbjct: 430 YCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALC 489
Query: 112 KDRTNIRHRYIEL 124
+ + + +R+I++
Sbjct: 490 RHKQYMGNRFIQV 502
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 847 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 906
Query: 106 AMQAM 110
A A+
Sbjct: 907 ATAAV 911
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|444729174|gb|ELW69601.1| RNA-binding protein 12 [Tupaia chinensis]
Length = 932
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 850 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 909
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 910 ATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|83320105|ref|NP_001032746.1| RNA-binding protein 12 [Rattus norvegicus]
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus]
gi|149030841|gb|EDL85868.1| rCG37481, isoform CRA_a [Rattus norvegicus]
gi|149030844|gb|EDL85871.1| rCG37481, isoform CRA_a [Rattus norvegicus]
Length = 1032
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 950 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 1009
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 1010 ATAAVIDLNDRP-IGSRKVKLVL 1031
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|301762096|ref|XP_002916483.1| PREDICTED: RNA-binding protein 12-like [Ailuropoda melanoleuca]
gi|281346062|gb|EFB21646.1| hypothetical protein PANDA_004540 [Ailuropoda melanoleuca]
Length = 923
Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 839 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 898
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 899 DEATAAVIDLNDRP-IGSRKVKLVL 922
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|197100361|ref|NP_001125474.1| RNA-binding protein 12 [Pongo abelii]
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12
gi|55728164|emb|CAH90832.1| hypothetical protein [Pongo abelii]
Length = 932
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 848 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 907
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 908 SRDEATAAV 916
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|20977028|gb|AAM33247.1| mitotic phosphoprotein 39 [Xenopus laevis]
Length = 412
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
H + + GLP++ E+D+ D+FS V+ V V + K G G V F +E ++ M
Sbjct: 103 HQDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFTEYETQVKVM 162
Query: 111 SKDRTNIRHRYIELFL-NSSSP 131
S+ R I R+ + L NS SP
Sbjct: 163 SQ-RHMINGRWCDCKLPNSKSP 183
>gi|426241396|ref|XP_004014577.1| PREDICTED: RNA-binding protein 12 isoform 2 [Ovis aries]
Length = 926
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 842 SSSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 901
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 902 DEATAAVIDLNDRP-IGSRKVKLVL 925
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|379642961|ref|NP_001243849.1| RNA-binding protein 12B [Equus caballus]
Length = 976
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG S++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGKAVKESDV 246
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +A+ A+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAVAAIK 959
>gi|296199717|ref|XP_002747276.1| PREDICTED: RNA-binding protein 12 isoform 1 [Callithrix jacchus]
Length = 1460
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 840 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 899
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 900 SRDEATAAV 908
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|166831595|gb|ABY90120.1| RNA binding motif protein 12 (predicted) [Callithrix jacchus]
Length = 1460
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 840 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 899
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 900 SRDEATAAV 908
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|281182775|ref|NP_001162483.1| RNA-binding protein 12 [Papio anubis]
gi|164623749|gb|ABY64675.1| RNA binding motif protein 12 (predicted) [Papio anubis]
Length = 1466
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 906 SRDEATAAV 914
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|114155120|ref|NP_083673.3| RNA-binding protein 12 [Mus musculus]
gi|114155125|ref|NP_733486.2| RNA-binding protein 12 [Mus musculus]
gi|262527571|sp|Q8R4X3.3|RBM12_MOUSE RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|26348755|dbj|BAC38017.1| unnamed protein product [Mus musculus]
gi|30851612|gb|AAH52473.1| RNA binding motif protein 12 [Mus musculus]
Length = 992
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 910 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 969
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 970 ATAAVIDLNDRP-IGSRKVKLVL 991
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|229368727|gb|ACQ63010.1| RNA binding motif protein 12, isoform 2 (predicted) [Dasypus
novemcinctus]
Length = 900
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 818 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 877
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 878 ATAAVIDLNDRP-IGSRKVKLVL 899
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|426391523|ref|XP_004062122.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Gorilla
gorilla gorilla]
Length = 1474
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 854 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 913
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 914 SRDEATAAV 922
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 439 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 498
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 499 HKQYMGNRFIQV 510
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 309 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 368
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 369 KRNRMLMIQRYVEV 382
>gi|332248945|ref|XP_003273625.1| PREDICTED: RNA-binding protein 12-like isoform 3 [Nomascus
leucogenys]
Length = 1466
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 906 SRDEATAAV 914
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|26330362|dbj|BAC28911.1| unnamed protein product [Mus musculus]
Length = 992
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 910 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 969
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 970 ATAAVIDLNDRP-IGSRKVKLVL 991
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|74184867|dbj|BAE39056.1| unnamed protein product [Mus musculus]
Length = 914
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 832 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 891
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 892 ATAAVIDLNDRP-IGSRKVKLVL 913
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 353 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 412
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 413 HKQYMGNRFIQV 424
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 228 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 287
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 288 LMIQRYVEV 296
>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus]
gi|21666374|gb|AAM73683.1| swan [Mus musculus]
gi|21666376|gb|AAM73684.1| swan [Mus musculus]
Length = 1003
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 921 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 980
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 981 ATAAVIDLNDRP-IGSRKVKLVL 1002
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|284520924|ref|NP_001165219.1| RNA-binding protein 12 [Canis lupus familiaris]
Length = 923
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 839 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 898
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 899 DEATAAVIDLNDRP-IGSRKVKLVL 922
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
>gi|300120924|emb|CBK21166.2| unnamed protein product [Blastocystis hominis]
Length = 361
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-------VPVYVDINYKNGRPSGE 95
D VNES VH++GLP+ E+ I +F +P Y D +GR G
Sbjct: 135 DEDVNESD-KNQTEVHLQGLPYDTTEETIREFLGECGTIKEIRIPTYQD----SGRCRGY 189
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
A V F A A+ K++ I RYI +
Sbjct: 190 AFVSFTNQAGAQAALKKNKEYIGERYITI 218
>gi|410953920|ref|XP_003983616.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Felis catus]
Length = 1482
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 864 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 923
Query: 104 EDAMQAM 110
++A A+
Sbjct: 924 DEATAAV 930
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|119612105|gb|EAW91699.1| RNA binding motif protein 12B [Homo sapiens]
Length = 707
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|348564119|ref|XP_003467853.1| PREDICTED: RNA-binding protein 12-like [Cavia porcellus]
Length = 1467
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 849 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 908
Query: 104 EDAMQAM 110
++A A+
Sbjct: 909 DEATAAV 915
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|410905475|ref|XP_003966217.1| PREDICTED: RNA-binding protein 12B-B-like [Takifugu rubripes]
Length = 627
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFS-PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V++RG+PF V E D+ +FF ++ V + +G +G V F + +D +A+ + R
Sbjct: 140 VYLRGMPFSVTEMDVSNFFDGLLIDGIVLLKNGHGSNTGNGLVKFRSSDDTYEALKRHRQ 199
Query: 116 NIRHRYIEL 124
I RY+E+
Sbjct: 200 YIGARYVEV 208
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 23 CFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVP 80
C DR + G F GP+ + GP V + LPF++ ++I DF ++P
Sbjct: 527 CSQQDRGSGVCGDF-GPQ-----MEHVDGPT--LVRLVNLPFQIRTEEIYDFCYGYRLIP 578
Query: 81 VYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTN-IRHRYIELFL 126
V + Y ++G+PSG A F + ++AM AM++ I R ++L L
Sbjct: 579 GSVSLQYEQSGKPSGSATAAFESRQEAMIAMAELSGRPIGSRKVQLLL 626
>gi|26325168|dbj|BAC26338.1| unnamed protein product [Mus musculus]
Length = 841
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 759 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 818
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 819 ATAAVIDLNDRP-IGSRKVKLVL 840
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 275 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 334
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 335 HKQYMGNRFIQV 346
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 150 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 209
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 210 LMIQRYVEV 218
>gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus musculus]
Length = 887
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 805 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 864
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 865 ATAAVIDLNDRP-IGSRKVKLVL 886
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 316 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 375
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 376 HKQYMGNRFIQV 387
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 191 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 250
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 251 LMIQRYVEV 259
>gi|444525890|gb|ELV14185.1| RNA-binding protein 12B [Tupaia chinensis]
Length = 1012
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S +GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIDLGGNA 240
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF +VP V I Y + G P+GEA V + +AM A+
Sbjct: 938 IKIMNLPFKANVNEILDFFHGYRIVPDSVSIQYNDQGLPTGEAIVAMINYNEAMAAIK 995
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF D+ FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHIIGGE-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I++ +ELFL+S +
Sbjct: 63 LIKNSSVELFLSSKA 77
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
S P VH++ LP +N++D+ +FF + + + YK+ R + A V F T +D
Sbjct: 277 SRSPLGFYVHLKNLPLSINKRDLRNFFRDTDLANEQIRFLYKDERRTRYAFVTFKTLKDY 336
Query: 107 MQAMSKDRTNIRHRYIEL 124
A+S +T +++R + +
Sbjct: 337 NTALSLHKTVLQYRPVHV 354
>gi|443715938|gb|ELU07670.1| hypothetical protein CAPTEDRAFT_117634 [Capitella teleta]
Length = 81
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVD-INYKNGRPSGEADVYFATHEDAMQAMSK 112
V M +P+R + DIVDFF PV P V + +GR +GE +V F + EDA A+ +
Sbjct: 6 VVAMYNVPYRASSLDIVDFFQGFPVDPHSVQLLQTADGRRTGEVNVTFPSVEDAAMAVQQ 65
Query: 113 -DRTNIRHRYIELFL 126
D + R +EL +
Sbjct: 66 LDHQDFMGRAVELCI 80
>gi|76155549|gb|AAX26841.2| SJCHGC06966 protein [Schistosoma japonicum]
Length = 106
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK------------------NGRPSGEAD 97
V +RGLPF N DI++FF + V N NGR +GEA
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
+ + +D +AM+ ++ RYIE L S
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIEGNLQS 99
>gi|398018805|ref|XP_003862567.1| RNA binding protein, putative [Leishmania donovani]
gi|322500797|emb|CBZ35874.1| RNA binding protein, putative [Leishmania donovani]
Length = 1385
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEAD 97
P R + + H + +R LP +NE+ + F+P +V + N G G A
Sbjct: 148 PSSRQLQPPANHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGTAF 207
Query: 98 VYFATHEDAMQAM 110
V FA HE+AM+AM
Sbjct: 208 VRFAKHEEAMRAM 220
>gi|18027358|gb|AAL55761.1|AF289577_1 unknown [Homo sapiens]
gi|119603621|gb|EAW83215.1| RNA binding motif protein 35B, isoform CRA_b [Homo sapiens]
Length = 303
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + +
Sbjct: 45 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 103
Query: 103 HEDAMQAMSKDRTNI-RHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + + RY+E+ S+ G +G SG S
Sbjct: 104 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 149
>gi|339898804|ref|XP_001466666.2| putative RNA binding protein [Leishmania infantum JPCM5]
gi|321398517|emb|CAM69709.2| putative RNA binding protein [Leishmania infantum JPCM5]
Length = 1389
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEAD 97
P R + + H + +R LP +NE+ + F+P +V + N G G A
Sbjct: 148 PSSRQLQPPANHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGTAF 207
Query: 98 VYFATHEDAMQAM 110
V FA HE+AM+AM
Sbjct: 208 VRFAKHEEAMRAM 220
>gi|126322103|ref|XP_001368765.1| PREDICTED: RNA-binding protein 12B-like [Monodelphis domestica]
Length = 745
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 20 GRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHT-VHMRGLPFRVNEKDIVDFFS-- 76
GR F N+ P G P P N + G G T + + LPF+ N +I+DFF
Sbjct: 638 GRFDFGNNNMGGFPEGRFMPDP-----NFNCGSGRVTPIKIMNLPFKANVNEILDFFHGY 692
Query: 77 PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V+P V I Y + G P GEA V +++AM A++
Sbjct: 693 GVIPESVSIQYNEQGLPLGEAIVAMVNYDEAMAAIN 728
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPS 93
G GPR R + + +RGLP+ E ++ FF + V + + + GR +
Sbjct: 151 GITGPRKETRTFKSDN----RYLFLRGLPYSATEDEVRAFFPGLCVDGIILLKHPTGRNN 206
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
G+ V FAT DA+ + + R + R++E+ S GGS + E+
Sbjct: 207 GDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGSADIKDEV 258
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
+ I+ +ELFL+S +
Sbjct: 59 RSGGFIKDSPVELFLSSKT 77
>gi|351702538|gb|EHB05457.1| RNA-binding protein 12 [Heterocephalus glaber]
Length = 850
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 766 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 825
Query: 104 EDAMQAM--SKDRTNIRHRYIELFL 126
++A A+ DR I R ++L L
Sbjct: 826 DEATAAVIDLNDRP-IGSRKVKLVL 849
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAAENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEI 374
>gi|358054464|dbj|GAA99390.1| hypothetical protein E5Q_06087 [Mixia osmundae IAM 14324]
Length = 392
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEAD 97
PRP DR+ N P + ++ LP+ +D+V+ F V ++ + +NGR G
Sbjct: 293 PRP-DRFANIDPSP---QIFVKNLPWSTANEDLVELFQTVGTVLHAEATQENGRAKGTGV 348
Query: 98 VYFATHEDAMQAMSK 112
V FAT +DA A++K
Sbjct: 349 VEFATADDAQTAITK 363
>gi|190402267|gb|ACE77677.1| RNA binding motif protein 12, isoform 1 (predicted) [Sorex araneus]
Length = 1520
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + R+I++
Sbjct: 491 HKQYMGSRFIQV 502
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATH 103
+ S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F +
Sbjct: 902 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 961
Query: 104 EDAMQAM 110
++A A+
Sbjct: 962 DEATAAV 968
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V + GR +G V F + +D +A+
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 361 KRNRMLMIQRYVEV 374
>gi|294925396|ref|XP_002778913.1| RNA-binding protein squid, putative [Perkinsus marinus ATCC 50983]
gi|239887759|gb|EER10708.1| RNA-binding protein squid, putative [Perkinsus marinus ATCC 50983]
Length = 297
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
+ + G+PF E+D+ DFFS PV V + ++ GR G V F T E M AM +
Sbjct: 50 IFIGGVPFTATEEDVADFFSQFGPVASVEIKMDKVTGRSRGFGFVVFETAEGKMGAMRRK 109
Query: 114 RTNIRH-RYIEL 124
+ H R I +
Sbjct: 110 GDLVLHNRQINI 121
>gi|147907062|ref|NP_001079993.1| RNA binding motif protein 12 [Xenopus laevis]
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xenopus laevis]
Length = 877
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGE 95
P P R + S V+++GLP+ K ++DFF +V + I Y NG+ +GE
Sbjct: 414 PNPQSRPRSRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGE 473
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
+ F ED A+ + + + +R++++
Sbjct: 474 GFLEFRNEEDYKSALCRHKQYMGNRFVQV 502
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 33 PGGFA--GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYK 88
PG A GP PG +V S+ G + ++ +PF V +I+DFF ++P V + +
Sbjct: 780 PGNMAVSGP-PG--FVAGSAKSGPTVIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFS 836
Query: 89 N-GRPSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELFL 126
+ G P+GEA V F + ++AM A + + I R ++L L
Sbjct: 837 DKGMPTGEAMVAFESRDEAMAAVVDLNERPIGSRKVKLTL 876
>gi|159163272|pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 86
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 87 HKQYMGNRFIQV 98
>gi|328773933|gb|EGF83970.1| hypothetical protein BATDEDRAFT_36405 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
++++RG+P + D+++ F V +Y+ +Y NGRP G A V F EDA AM
Sbjct: 4 RSIYVRGVPPDASSSDLMEHFEEYGKVNDIYIPKSYHNGRPRGFAYVKFDKQEDAELAME 63
Query: 112 K 112
K
Sbjct: 64 K 64
>gi|431912397|gb|ELK14531.1| Epithelial splicing regulatory protein 2 [Pteropus alecto]
Length = 698
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATH 103
+G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 441 AGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSA 499
Query: 104 EDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 500 ERAIAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 544
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 374 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 433
Query: 111 SKDR 114
+ +
Sbjct: 434 RRHK 437
>gi|302891931|ref|XP_003044847.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
gi|256725772|gb|EEU39134.1| hypothetical protein NECHADRAFT_42935 [Nectria haematococca mpVI
77-13-4]
Length = 566
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+T H+ L + V + DFF+ VV V + + + RP G V FAT E QA++
Sbjct: 97 YTAHLGNLAYDVTNDAVTDFFTGCDVVSVRLIEDRELQRPKGFGYVEFATVEGLKQALAL 156
Query: 113 DRTNIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
D + + R + + + + PRGG G G S EL
Sbjct: 157 DGESFQGRTVRIKV-ADPPRGGDPGRGDSIREL 188
>gi|242003936|ref|XP_002422915.1| THO complex subunit, putative [Pediculus humanus corporis]
gi|212505808|gb|EEB10177.1| THO complex subunit, putative [Pediculus humanus corporis]
Length = 315
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 28 RWN-DRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDI 85
RW D GFA P R V + GP + L F V++ D+ + F+ P+ +
Sbjct: 140 RWQHDMFDGFA-PVRSPRGVQGAMGPAKLLIS--NLEFGVSDSDVTELFAEFGPLKSAAV 196
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAMSK 112
+Y ++GR G ADV F EDA++AM +
Sbjct: 197 HYDRSGRSLGTADVIFLRREDAIKAMMQ 224
>gi|351714130|gb|EHB17049.1| Epithelial splicing regulatory protein 2 [Heterocephalus glaber]
Length = 719
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 395 LRLRGLPFSAGPADVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 454
Query: 111 SKDR 114
+ +
Sbjct: 455 RRHK 458
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATH 103
+G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 462 AGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSA 520
Query: 104 EDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV-GGSGFSRS 143
E A+ A + + ++ RY+E+ S+ V G SRS
Sbjct: 521 ERALAAAQRCHKKMMKERYVEVVSCSTEDMSRVLMGGTLSRS 562
>gi|194747277|ref|XP_001956079.1| GF25026 [Drosophila ananassae]
gi|190623361|gb|EDV38885.1| GF25026 [Drosophila ananassae]
Length = 1037
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ ++ LP+ N +DI +FFS + ++ G G+A + F+T EDA AM KDR
Sbjct: 5 IRLQNLPWTANARDIRNFFSGLAIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDREK 63
Query: 117 IRHRYIELFLNS 128
+ + L L+S
Sbjct: 64 LMEIQVRLLLSS 75
>gi|350296577|gb|EGZ77554.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 356
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 37 AGPRPGDRWVNESS------GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY---VDINY 87
AG +P D+ N ++ P T+ + +PF +E + DFF+ V V + +
Sbjct: 188 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 247
Query: 88 KNGRPSGEADVYFATHEDAMQAMSK 112
++GRP G A V F + EDA A +
Sbjct: 248 ESGRPKGFAYVTFNSVEDAKNAFEQ 272
>gi|336464486|gb|EGO52726.1| hypothetical protein NEUTE1DRAFT_91358 [Neurospora tetrasperma FGSC
2508]
Length = 356
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 37 AGPRPGDRWVNESS------GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY---VDINY 87
AG +P D+ N ++ P T+ + +PF +E + DFF+ V V + +
Sbjct: 188 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 247
Query: 88 KNGRPSGEADVYFATHEDAMQAMSK 112
++GRP G A V F + EDA A +
Sbjct: 248 ESGRPKGFAYVTFNSVEDAKNAFEQ 272
>gi|312073187|ref|XP_003139407.1| hypothetical protein LOAG_03822 [Loa loa]
Length = 180
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++ LP N DI FF+ P V++ G P G+A + FAT EDA QAM
Sbjct: 4 IIRLQRLPLSANAADIRSFFAGLRIPDGAVHI-----VGGPDGDAFIGFATDEDARQAMR 58
Query: 112 KDRTNIRHRYIELFLNS 128
D I + + L L+S
Sbjct: 59 FDNRRIHDQRVRLLLSS 75
>gi|432101444|gb|ELK29626.1| Cysteine desulfurase, mitochondrial [Myotis davidii]
Length = 815
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 733 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 792
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 793 ATAAVIDLNDRP-IGSRKVKLVL 814
>gi|260797907|ref|XP_002593942.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
gi|229279174|gb|EEN49953.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
Length = 678
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP+ +KD+ DFF + V I++++G+ G V F ++ D A+ +
Sbjct: 306 CISLKGLPYTAKDKDVRDFFKGLGIRKVWIDFEDGKAIGSGFVEFKSYGDQKAALRMHKK 365
Query: 116 NIRHRYIEL 124
+ RYIE+
Sbjct: 366 YMGSRYIEV 374
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP+ + DI FFS + ++ G +G+A + FA+ EDA QAM++
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIVGGD-AGDAFIIFASDEDARQAMARTGN 62
Query: 116 NIRHRYIELFLNS 128
I I L+L+S
Sbjct: 63 TIHGSPITLYLSS 75
>gi|321463278|gb|EFX74295.1| hypothetical protein DAPPUDRAFT_307392 [Daphnia pulex]
Length = 929
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGR-PSGEADVYFATHEDAMQA 109
G V + GLP E+DI DFFS V+P ++I Y R P G A FA+ ++A +A
Sbjct: 635 GPQRVFITGLPPSALERDIGDFFSDVGVIPQIIEIVYDEERMPVGNAYCQFASMQEAERA 694
Query: 110 MSKD 113
+ K+
Sbjct: 695 LDKN 698
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++ LP+ N DI FF + ++ G+ G+A + F+T EDA Q M+ D
Sbjct: 4 IIRLQNLPWSANAADIRQFFHGLSIPEGGVHIVGGQ-LGDAFIAFSTDEDARQGMASDGG 62
Query: 116 NIRHRYIELFLNS 128
++ ++L+L+S
Sbjct: 63 MLKDSRVKLYLSS 75
>gi|241948723|ref|XP_002417084.1| nucleolar protein Nop4, putative [Candida dubliniensis CD36]
gi|223640422|emb|CAX44674.1| nucleolar protein Nop4, putative [Candida dubliniensis CD36]
Length = 740
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 43 DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYF 100
D N+ G H T+ +R +PF +++ ++FS VPV V + G+ G V F
Sbjct: 21 DSGKNQDDGLDHKTLFIRSIPFDATSEELSEYFSQFVPVKHAVIVTDNEGKSRGFGFVSF 80
Query: 101 ATHEDAMQAMSKDR-TNIRHRYIEL 124
ED + A+ + R T + R + +
Sbjct: 81 TLDEDCLTALVESRKTKFKDRLLRV 105
>gi|405963583|gb|EKC29145.1| Putative RNA-binding protein 19 [Crassostrea gigas]
Length = 878
Score = 40.8 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPS-GEADVYFATHEDAMQAMSKD 113
+ + MR LP EK + +FF+P+ P + I N + S G A V F++ +D AM ++
Sbjct: 258 YMLKMRNLPVSAGEKALKEFFNPIKPKDIRIPKNNQKKSIGVAYVDFSSEKDLNDAMRRN 317
Query: 114 RTNIRHRYIEL 124
+ I+ + + L
Sbjct: 318 KNFIKSKRVYL 328
>gi|324497690|gb|ADY39495.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 98
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 89 NGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFL 126
+GRP+GEA V F + DA +A+ K+R NI +RYIELF+
Sbjct: 59 DGRPNGEALVTFPSRADAERAIQEKNRHNIGNRYIELFM 97
>gi|158428444|pdb|2EK6|A Chain A, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428445|pdb|2EK6|B Chain B, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428446|pdb|2EK6|C Chain C, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428447|pdb|2EK6|D Chain D, Crystal Structure Of Human Rna-Binding Protein 12
Length = 95
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++A
Sbjct: 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATA 72
Query: 109 AM 110
A+
Sbjct: 73 AV 74
>gi|311253626|ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa]
Length = 986
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAMKEDDI 246
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF V+P V I Y + G P+GEA V + +AM A+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 969
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|242003014|ref|XP_002422579.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
gi|212505369|gb|EEB09841.1| squamous cell carcinoma antigen, putative [Pediculus humanus
corporis]
Length = 858
Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKN 89
R GGF SSG + + +RGLPF +D+ FS + + Y+N
Sbjct: 683 RSGGF----------KYSSGMEKNKLFVRGLPFSTTVEDLKTLFSKFGSLKDVRLVTYRN 732
Query: 90 GRPSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELFLNSSSPRGG 134
G G A V F A QA +S D T I ++ I + +++ R G
Sbjct: 733 GHSKGLAYVEFEDEASAAQAVLSTDGTTIENKQISVAISNPPERKG 778
>gi|156401533|ref|XP_001639345.1| predicted protein [Nematostella vectensis]
gi|156226473|gb|EDO47282.1| predicted protein [Nematostella vectensis]
Length = 75
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMSK 112
+ M+GLPF +DI FF + DI+ K+G+ SG + F +DA +AM +
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 113 DRTNIRHRYIEL 124
+ RYIEL
Sbjct: 64 TGKYMGKRYIEL 75
>gi|225560818|gb|EEH09099.1| RNP domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 471
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYK-NGRPSGEADVYFATHEDA 106
S G T+++R LP+ +D+VD FS + V +I Y+ NGR G V F T E+A
Sbjct: 364 SGGERSATIYVRNLPWSTCNEDLVDLFSTIGKVEKAEIQYEPNGRSRGTGVVEFDTAENA 423
Query: 107 MQAMSK 112
A++K
Sbjct: 424 ETAINK 429
>gi|325089108|gb|EGC42418.1| RNP domain-containing protein [Ajellomyces capsulatus H88]
Length = 471
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYK-NGRPSGEADVYFATHEDA 106
S G T+++R LP+ +D+VD FS + V +I Y+ NGR G V F T E+A
Sbjct: 364 SGGERSATIYVRNLPWSTCNEDLVDLFSTIGKVEKAEIQYEPNGRSRGTGVVEFDTAENA 423
Query: 107 MQAMSK 112
A++K
Sbjct: 424 ETAINK 429
>gi|402581245|gb|EJW75193.1| hypothetical protein WUBG_13897 [Wuchereria bancrofti]
Length = 179
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++ LP N DI FF+ P V++ G P G+A + FAT EDA QAM
Sbjct: 4 IIRLQRLPLSANAADIRSFFAGLRIPDGAVHI-----VGGPDGDAFIGFATDEDARQAMR 58
Query: 112 KDRTNIRHRYIELFLNS 128
D I + + L L+S
Sbjct: 59 FDNRRIHDQRVRLLLSS 75
>gi|301606650|ref|XP_002932936.1| PREDICTED: RNA-binding protein 12 [Xenopus (Silurana) tropicalis]
Length = 880
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + GLP V+E DI DFF + + V + GR +G A V T D +A+ ++R
Sbjct: 309 VCLHGLPVPVSEADIKDFFHGLRIDGIVVLKDPMGRHNGSALVKLITPHDTFEALKRNRM 368
Query: 116 NIRHRYIEL 124
+ R+IE+
Sbjct: 369 LLGQRFIEV 377
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 49 SSGPGHH--TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATH 103
S P H V+++GLP+ K ++DFF +V + I Y NG+ +GE + F
Sbjct: 425 SRSPHEHGFCVYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSNGKATGEGFLEFRNE 484
Query: 104 EDAMQAMSKDRTNIRHRYIEL 124
ED A+ + + + +R++++
Sbjct: 485 EDYKSALCRHKQYMGNRFVQV 505
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 3 DANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSG-------PGHH 55
+AN T G G N P GF PG+ V+ G G
Sbjct: 754 NANIPPNFNTAPPNIGSGPAILN------APPGFG---PGNLSVSGPPGFGAGAAKSGPT 804
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS- 111
+ ++ +PF V +I+DFF ++P V + + + G P+GEA V F + ++AM A+
Sbjct: 805 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 112 -KDRTNIRHRYIELFL 126
DR I R ++L L
Sbjct: 865 LNDRP-IGSRKVKLTL 879
>gi|94466659|emb|CAJ44458.1| ALY protein [Nicotiana benthamiana]
Length = 275
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V++ L V DI + FS + + I+Y KNGRPSG A+V FA DA QA+ +
Sbjct: 99 VYVSNLDVGVTNSDIRELFSEIGELIRYAIHYDKNGRPSGAAEVVFARRSDAYQALKR 156
>gi|327271497|ref|XP_003220524.1| PREDICTED: RNA-binding protein 12-like [Anolis carolinensis]
Length = 1418
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G +GEA V F + ++
Sbjct: 805 SGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMTTGEAMVAFESRDE 864
Query: 106 AMQAM 110
AM A+
Sbjct: 865 AMAAV 869
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ GE V F D A+
Sbjct: 428 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCH 487
Query: 113 DRTNIRHRYIEL 124
+ I +R+I++
Sbjct: 488 HKQYIGNRFIQV 499
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P V + G+PF E D+ DFF + V I + GR +G V F + D +A+
Sbjct: 298 PDDLYVSIHGMPFSATESDVKDFFHGLRVDAVHILKDHVGRNNGNGFVKFCSPPDTFEAL 357
Query: 111 SKDRTNIRHRYIEL 124
++R + RY+E+
Sbjct: 358 KRNRMLMIQRYVEV 371
>gi|393908967|gb|EJD75265.1| hypothetical protein LOAG_17558 [Loa loa]
Length = 972
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 57 VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ ++ LP N DI FF+ P V++ G P G+A + FAT EDA QAM
Sbjct: 5 IRLQRLPLSANAADIRSFFAGLRIPDGAVHI-----VGGPDGDAFIGFATDEDARQAMRF 59
Query: 113 DRTNIRHRYIELFLNS 128
D I + + L L+S
Sbjct: 60 DNRRIHDQRVRLLLSS 75
>gi|440797920|gb|ELR18994.1| fibronectin type III domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 740
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V MRGLP+ V +DI FF+ + P V + +N+ +GRP+G+ V FA+ + A A+
Sbjct: 681 VVKMRGLPWEVTPEDIARFFATLDIAPEGVSIALNF-DGRPTGDGFVCFASADHATLALQ 739
Query: 112 K 112
+
Sbjct: 740 R 740
>gi|426235843|ref|XP_004023424.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like [Ovis
aries]
Length = 983
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGS 138
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEKQWIDFGGT 239
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 909 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 966
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAVSRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|85111281|ref|XP_963862.1| hypothetical protein NCU03092 [Neurospora crassa OR74A]
gi|28925605|gb|EAA34626.1| predicted protein [Neurospora crassa OR74A]
Length = 428
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 37 AGPRPGDRWVNESS------GPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY---VDINY 87
AG +P D+ N ++ P T+ + +PF +E + DFF+ V V + +
Sbjct: 260 AGNKPQDKAANRAAKHGDTISPESDTLFVGNMPFSADESVVSDFFNSVASVASLRIPTDQ 319
Query: 88 KNGRPSGEADVYFATHEDAMQAMSK 112
++GRP G A V F + EDA A +
Sbjct: 320 ESGRPKGFAYVTFNSVEDAKNAFEQ 344
>gi|194864880|ref|XP_001971153.1| GG14589 [Drosophila erecta]
gi|190652936|gb|EDV50179.1| GG14589 [Drosophila erecta]
Length = 995
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++ LP+ N +DI +FFS + ++ G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 116 NIRHRYIELFLNS 128
+ + L L+S
Sbjct: 63 KLMEIQVRLLLSS 75
>gi|167522944|ref|XP_001745809.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775610|gb|EDQ89233.1| predicted protein [Monosiga brevicollis MX1]
Length = 1128
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV---YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
T+ +R L F V +D+ D FS + PV +V + + G+ G V FA H+DA +A++K
Sbjct: 24 TLFVRNLAFSVTSQDLEDLFSDIAPVKQCFVVNDSQTGQSRGFGYVRFALHDDAAEALNK 83
>gi|170596136|ref|XP_001902655.1| swan [Brugia malayi]
gi|158589551|gb|EDP28496.1| swan, putative [Brugia malayi]
Length = 179
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++ LP N DI FF+ P V++ G P G+A + FAT EDA QAM
Sbjct: 4 IIRLQRLPLSANAADIRTFFAGLRIPDGAVHI-----VGGPDGDAFIGFATDEDARQAMR 58
Query: 112 KDRTNIRHRYIELFLNS 128
D I + + L L+S
Sbjct: 59 FDNRRIHDQRVRLLLSS 75
>gi|395818217|ref|XP_003782532.1| PREDICTED: RNA-binding protein 12B isoform 3 [Otolemur garnettii]
Length = 996
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 167 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 226
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 227 FMGSRFIEVMQGSEQQWIEFGGNA 250
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 922 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 979
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGK-IGEAFIIFATDEDARRAISRSGG 72
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 73 FIKDSSVELFLSSKA 87
>gi|26327221|dbj|BAC27354.1| unnamed protein product [Mus musculus]
Length = 82
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNS 128
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSS 75
>gi|401415848|ref|XP_003872419.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488643|emb|CBZ23890.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1384
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEAD 97
P R + H + +R LP +NE+ + F+P +V + N G G A
Sbjct: 148 PSSRHLQPPPNHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGTAF 207
Query: 98 VYFATHEDAMQAM 110
V FA HE+AM+AM
Sbjct: 208 VRFAKHEEAMRAM 220
>gi|38174066|gb|AAH61336.1| TAR DNA-binding protein 43 [Xenopus (Silurana) tropicalis]
Length = 407
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ D+FS V+ V V + K G G V FA +E ++ MS+ R I
Sbjct: 109 GLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQ-RHMI 167
Query: 118 RHRYIELFL-NSSSP 131
R+ + L NS SP
Sbjct: 168 DGRWCDCKLPNSKSP 182
>gi|68064313|ref|XP_674142.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56492497|emb|CAI03665.1| conserved hypothetical protein [Plasmodium berghei]
Length = 346
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 60 RGLPFRVNEKDIVDFFSP--VVPVYVD-INYKNGRPSGEADVYFATHEDAMQAM-SKDRT 115
+GLPF VN+ +I+ FFSP ++ Y+ I KNG G+ V F E + +K+
Sbjct: 161 KGLPFHVNDDEIIKFFSPYKIMNKYIIYIKDKNGNFFGDILVRFQNKEQNQLVLKNKNFK 220
Query: 116 NIRHRYIELF 125
+ HRYI+++
Sbjct: 221 FLLHRYIQIY 230
>gi|68063737|ref|XP_673865.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56492026|emb|CAI00271.1| hypothetical protein PB000828.03.0 [Plasmodium berghei]
Length = 323
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 60 RGLPFRVNEKDIVDFFSP--VVPVYVD-INYKNGRPSGEADVYFATHEDAMQAM-SKDRT 115
+GLPF VN+ +I+ FFSP ++ Y+ I KNG G+ V F E + +K+
Sbjct: 161 KGLPFHVNDDEIIKFFSPYKIMNKYIIYIKDKNGNFFGDILVRFQNKEQNQLVLKNKNFK 220
Query: 116 NIRHRYIELF 125
+ HRYI+++
Sbjct: 221 FLLHRYIQIY 230
>gi|348041333|ref|NP_989054.2| TAR DNA-binding protein 43 isoform 1 [Xenopus (Silurana)
tropicalis]
gi|123915948|sp|Q28F51.1|TADBP_XENTR RecName: Full=TAR DNA-binding protein 43; Short=TDP-43
gi|89269046|emb|CAJ81570.1| TAR DNA binding protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ D+FS V+ V V + K G G V FA +E ++ MS+ R I
Sbjct: 111 GLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQ-RHMI 169
Query: 118 RHRYIELFL-NSSSP 131
R+ + L NS SP
Sbjct: 170 DGRWCDCKLPNSKSP 184
>gi|426360209|ref|XP_004047340.1| PREDICTED: RNA-binding protein 12B isoform 1 [Gorilla gorilla
gorilla]
gi|426360211|ref|XP_004047341.1| PREDICTED: RNA-binding protein 12B isoform 2 [Gorilla gorilla
gorilla]
gi|426360213|ref|XP_004047342.1| PREDICTED: RNA-binding protein 12B isoform 3 [Gorilla gorilla
gorilla]
gi|426360215|ref|XP_004047343.1| PREDICTED: RNA-binding protein 12B isoform 4 [Gorilla gorilla
gorilla]
gi|426360217|ref|XP_004047344.1| PREDICTED: RNA-binding protein 12B isoform 5 [Gorilla gorilla
gorilla]
gi|426360219|ref|XP_004047345.1| PREDICTED: RNA-binding protein 12B isoform 6 [Gorilla gorilla
gorilla]
Length = 1001
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|410987464|ref|XP_004000021.1| PREDICTED: RNA-binding protein 12B [Felis catus]
Length = 999
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 170 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 229
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG+ ++
Sbjct: 230 FMGSRFIEVMQGSEQQWIEFGGNAIKEVDI 259
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 925 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 982
>gi|367000057|ref|XP_003684764.1| hypothetical protein TPHA_0C01740 [Tetrapisispora phaffii CBS 4417]
gi|357523061|emb|CCE62330.1| hypothetical protein TPHA_0C01740 [Tetrapisispora phaffii CBS 4417]
Length = 697
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
T+ +R +P + + + DFFS P+ V + N + G V FA+ ED+ +A++K
Sbjct: 23 TLFVRSIPLQTTDDEFTDFFSNFAPLKHAVIVKDTNKKSRGFGFVSFASEEDSQEALTKA 82
Query: 114 RTN 116
RT+
Sbjct: 83 RTS 85
>gi|344273251|ref|XP_003408437.1| PREDICTED: RNA-binding protein 12B-like [Loxodonta africana]
Length = 971
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGE-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ Y+ELFL+S +
Sbjct: 63 LIKDSYVELFLSSKA 77
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FF+ + V + + +GR +G+A V FA+ DA + R+
Sbjct: 152 LFLRGLPYLVNEDDVRVFFAGLCVDGVIFLKLHDGRNNGDAIVKFASCIDASGGLKCHRS 211
Query: 116 NIRHRYIELFLNSSSPRGGVGGS 138
+ R+IE+ +S GG
Sbjct: 212 FMGSRFIEVMQSSEQQWIHCGGK 234
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 19 GGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS-- 76
GG+ F D P G P P ++ P + + LPF+ N +I+DFF
Sbjct: 863 GGKFDFGKRNMGDFPEGRFMPDPKLNCGSDRVTP----IKIMNLPFKANVNEILDFFHGY 918
Query: 77 PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V+P V I Y + G P GEA V + +A+ A+
Sbjct: 919 KVIPDSVSIQYNEKGLPIGEAIVTMINYNEAVAAIK 954
>gi|395818213|ref|XP_003782530.1| PREDICTED: RNA-binding protein 12B isoform 1 [Otolemur garnettii]
gi|395818215|ref|XP_003782531.1| PREDICTED: RNA-binding protein 12B isoform 2 [Otolemur garnettii]
Length = 986
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 912 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 969
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGK-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|332830801|ref|XP_003311886.1| PREDICTED: RNA-binding protein 12B isoform 1 [Pan troglodytes]
gi|332830803|ref|XP_003339206.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|332830805|ref|XP_003311887.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pan troglodytes]
gi|332830807|ref|XP_003311889.1| PREDICTED: RNA-binding protein 12B isoform 4 [Pan troglodytes]
gi|332830809|ref|XP_003311890.1| PREDICTED: RNA-binding protein 12B isoform 5 [Pan troglodytes]
gi|410041995|ref|XP_003951348.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|410222496|gb|JAA08467.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410266932|gb|JAA21432.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410301828|gb|JAA29514.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410338931|gb|JAA38412.1| RNA binding motif protein 12B [Pan troglodytes]
Length = 1001
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|301762464|ref|XP_002916650.1| PREDICTED: RNA-binding protein 12B-like [Ailuropoda melanoleuca]
gi|281349037|gb|EFB24621.1| hypothetical protein PANDA_004747 [Ailuropoda melanoleuca]
Length = 985
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEVDI 246
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF V+P V I Y + G P+GEA V + +AM A+
Sbjct: 911 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 968
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|440906243|gb|ELR56528.1| RNA-binding protein 12B [Bos grunniens mutus]
Length = 977
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSS 130
+ R+IE+ S
Sbjct: 217 FMGSRFIEVMQGSEK 231
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 903 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 960
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAVSRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|268566957|ref|XP_002639856.1| Hypothetical protein CBG12209 [Caenorhabditis briggsae]
Length = 965
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ ++ LP D+ FFS P V++ G GE V FA+ EDA AM++
Sbjct: 5 IRLKNLPMTAAAADVRTFFSGLKIPDGAVHII-----GGDEGEVFVGFASDEDARLAMAR 59
Query: 113 DRTNIRHRYIELFLNSSSPRGGV 135
DR I I LFL+S S + V
Sbjct: 60 DRAKIHGAEIRLFLSSKSEQSSV 82
>gi|194673041|ref|XP_881008.3| PREDICTED: RNA-binding protein 12B isoform 4 [Bos taurus]
gi|297482529|ref|XP_002692866.1| PREDICTED: RNA-binding protein 12B [Bos taurus]
gi|296480442|tpg|DAA22557.1| TPA: RNA binding motif protein 12-like [Bos taurus]
Length = 984
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSS 130
+ R+IE+ S
Sbjct: 217 FMGSRFIEVMQGSEK 231
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 967
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAVSRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|380786971|gb|AFE65361.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|397500945|ref|XP_003821163.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B [Pan
paniscus]
Length = 1001
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|37360080|dbj|BAC98018.1| mKIAA0765 protein [Mus musculus]
Length = 569
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 343 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 402
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 403 KQYMGNRFIQV 413
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 217 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 276
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 277 LMIQRYVEV 285
>gi|402878712|ref|XP_003903017.1| PREDICTED: RNA-binding protein 12B isoform 1 [Papio anubis]
gi|402878714|ref|XP_003903018.1| PREDICTED: RNA-binding protein 12B isoform 2 [Papio anubis]
Length = 1001
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|389593937|ref|XP_003722217.1| putative RNA binding protein [Leishmania major strain Friedlin]
gi|321438715|emb|CBZ12475.1| putative RNA binding protein [Leishmania major strain Friedlin]
Length = 1384
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 41 PGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEAD 97
P R + + H + +R LP +NE+ + F+P +V + N G G A
Sbjct: 148 PSLRHLQPPANHSHVNLFVRHLPLELNEEKLRAMFAPFGEIVNSAIMRNIHTGVSLGTAF 207
Query: 98 VYFATHEDAMQAM 110
V FA HE+AM+AM
Sbjct: 208 VRFAKHEEAMRAM 220
>gi|171848662|pdb|2EK1|A Chain A, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848663|pdb|2EK1|B Chain B, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848664|pdb|2EK1|C Chain C, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848665|pdb|2EK1|D Chain D, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848666|pdb|2EK1|E Chain E, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848667|pdb|2EK1|F Chain F, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848668|pdb|2EK1|G Chain G, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
gi|171848669|pdb|2EK1|H Chain H, Crystal Structure Of Rna-Binding Motif Of Human
Rna-Binding Protein 12
Length = 95
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQ 108
PG + ++ PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++A
Sbjct: 13 PGPTVIKVQNXPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGXPTGEAXVAFESRDEATA 72
Query: 109 AM 110
A+
Sbjct: 73 AV 74
>gi|355698096|gb|EHH28644.1| RNA-binding motif protein 12B [Macaca mulatta]
gi|355779824|gb|EHH64300.1| RNA-binding motif protein 12B [Macaca fascicularis]
gi|383409041|gb|AFH27734.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|345793203|ref|XP_544177.3| PREDICTED: RNA-binding protein 12B [Canis lupus familiaris]
Length = 994
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSEL 145
+ R+IE+ S GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEVDI 246
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 977
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|296226920|ref|XP_002759119.1| PREDICTED: RNA-binding protein 12B isoform 1 [Callithrix jacchus]
gi|296226922|ref|XP_002759120.1| PREDICTED: RNA-binding protein 12B isoform 2 [Callithrix jacchus]
gi|390475792|ref|XP_003735019.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475794|ref|XP_003735020.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475796|ref|XP_003735021.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
Length = 1001
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSELW 146
+ R+IE+ S GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEGDIL 247
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|307109347|gb|EFN57585.1| hypothetical protein CHLNCDRAFT_143267 [Chlorella variabilis]
Length = 521
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFAT 102
V+ S+ G T+ M+ LP+ E I +FF+ P+ V + + GR G A V F
Sbjct: 250 VDVSAANGSRTIFMKNLPWAAEEDTIREFFAECGPIAEVRIAYDRDTGRAKGFAHVQFEE 309
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
E A +A + ++ R EL++ S++ R
Sbjct: 310 LEGAAKATALSGESLMDR--ELYIESTTER 337
>gi|297299765|ref|XP_002808531.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like
[Macaca mulatta]
Length = 1001
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|118722349|ref|NP_976324.2| RNA-binding protein 12B [Homo sapiens]
gi|215273872|sp|Q8IXT5.2|RB12B_HUMAN RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
Length = 1001
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|297841223|ref|XP_002888493.1| hypothetical protein ARALYDRAFT_475731 [Arabidopsis lyrata subsp.
lyrata]
gi|297334334|gb|EFH64752.1| hypothetical protein ARALYDRAFT_475731 [Arabidopsis lyrata subsp.
lyrata]
Length = 293
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
TV++ L V +DI + ++ + + Y I+Y KNGRPSG A+V + DA+QAM K
Sbjct: 107 TVYITNLDQGVTNEDIRELYTEIGELKRYA-IHYDKNGRPSGSAEVVYMRRSDALQAMRK 165
>gi|403295801|ref|XP_003938814.1| PREDICTED: RNA-binding protein 12B [Saimiri boliviensis
boliviensis]
Length = 1001
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSGFSRSELW 146
+ R+IE+ S GG+ ++
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNAVKEGDIL 247
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|390596324|gb|EIN05726.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 614
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 31/144 (21%)
Query: 13 GANRFGGGRGCFNND-----RWNDRPGGFAGPRPGDRWVNESSGPGHH-TVHMRGLPFRV 66
GA R GR D R + R GG +R V++S H T+ + LP++
Sbjct: 83 GAKRATSGRDEVQRDFRSGRRRDTREGG-----ARERVVDDSPIAKHEATLFLANLPWKT 137
Query: 67 NEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
E ++ +FF V V + + + NG P+G A V FA+ +DA + + HR ++
Sbjct: 138 TEDELREFFGEDKVADVKLAV-HGNGLPAGTAHVQFASVDDARNVLDE------HRNSQI 190
Query: 125 FLNSSSPRGGVGGSGFSRSELWAV 148
+L GG G + LWAV
Sbjct: 191 YL---------GGRGL--TVLWAV 203
>gi|332238333|ref|XP_003268351.1| PREDICTED: RNA-binding protein 12B isoform 1 [Nomascus leucogenys]
gi|332238335|ref|XP_003268352.1| PREDICTED: RNA-binding protein 12B isoform 2 [Nomascus leucogenys]
gi|332238337|ref|XP_003268353.1| PREDICTED: RNA-binding protein 12B isoform 3 [Nomascus leucogenys]
gi|441647142|ref|XP_004090789.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
gi|441647145|ref|XP_004090790.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
Length = 1001
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAVINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|297683295|ref|XP_002819319.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pongo abelii]
gi|297683297|ref|XP_002819320.1| PREDICTED: RNA-binding protein 12B isoform 3 [Pongo abelii]
gi|395739892|ref|XP_003777333.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
gi|395739895|ref|XP_003777334.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
Length = 1001
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
>gi|395512126|ref|XP_003760295.1| PREDICTED: RNA-binding protein 12B [Sarcophilus harrisii]
Length = 745
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF V+P V I Y + G P GEA V +++AM A++
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNDQGLPLGEAIVAMVNYDEAMAAIN 728
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+ ++GLP DI FFS + +P V++ G GEA + FAT EDA +AMS
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHI-----IGGEIGEAFIIFATDEDARRAMS 58
Query: 112 KDRTNIRHRYIELFLNSSS 130
+ I+ +ELFL+S +
Sbjct: 59 RSGGFIKDSPVELFLSSKT 77
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPS 93
G GPR R + + +RGLP+ E ++ FF + V + + + GR +
Sbjct: 151 GITGPRKETRTFKSDN----RYLFLRGLPYSATEDEVRAFFPGLCVDGVILLKHPTGRNN 206
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
G+ V FAT DA+ + + R + R++E+ S GGS
Sbjct: 207 GDCLVKFATSHDALGGLQRHRHYMGSRFVEVSPASEQQWIDCGGS 251
>gi|9663023|emb|CAC01083.1| DIP1 protein [Arabidopsis thaliana]
Length = 295
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
TV++ L V +DI + ++ + + Y I+Y KNGRPSG A+V + DA+QAM K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYA-IHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mus musculus]
gi|148674225|gb|EDL06172.1| mCG5227, isoform CRA_a [Mus musculus]
Length = 773
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
>gi|47220951|emb|CAG03484.1| unnamed protein product [Tetraodon nigroviridis]
Length = 603
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHED 105
V +SG T+ + L F E+ + F + I ++GRP G A V F T +D
Sbjct: 376 VPAASGAASKTLVVNNLAFSATEEVLQSTFEKATSI--RIPQRDGRPKGFAFVEFETVKD 433
Query: 106 AMQAM-SKDRTNIRHRYIELFLNSSSPR--GGVGGSGFSRS 143
A A+ S + T+I R I L + +S R GG G SG +++
Sbjct: 434 ATDALESLNNTDIEGRSIRLEFSQNSGRGEGGRGNSGPTKT 474
>gi|12323574|gb|AAG51767.1|AC066691_7 RNA and export factor binding protein, putative; 38196-36208
[Arabidopsis thaliana]
Length = 282
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
TV++ L V +DI + ++ + + Y I+Y KNGRPSG A+V + DA+QAM K
Sbjct: 95 TVYITNLDQGVTNEDIRELYAEIGELKRYA-IHYDKNGRPSGSAEVVYMRRSDAIQAMRK 153
>gi|405978215|gb|EKC42625.1| Myelin expression factor 2 [Crassostrea gigas]
Length = 468
Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 31 DRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN 89
DR G R DR + S+ P + TV +R LP+ + +D+ + F V V + +I +N
Sbjct: 365 DRGGS---SRGRDRDSDRSTRPDNCTVCVRNLPYSLKWQDLKEKFKAVADVRFAEIKMEN 421
Query: 90 GRPSGEADVYFATHEDAMQAM 110
GR +G V F +DA +A+
Sbjct: 422 GRSAGWGLVRFGNPDDAQRAI 442
>gi|167535939|ref|XP_001749642.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771790|gb|EDQ85451.1| predicted protein [Monosiga brevicollis MX1]
Length = 948
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFA 101
R +++ + + + GLP + D+ +F +P V+ V ++ N GR G+A V
Sbjct: 561 RALSKDAANDSQYLSVHGLPLDTTKHDLEEFMAPAQVLDVMLECN-PEGRCEGKACVLVC 619
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNSS 129
T EDA A+ K++T + R +++ + ++
Sbjct: 620 TPEDARLALEKNKTEFKGRSVDIEMGTA 647
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 59 MRGLPFRVNEKDIVDFF---SPVVPVYVDINYK-NGRPSGEADVYFATHEDA--MQAMSK 112
+RG+P+ E DI D++ +P+V + K NGR G+A VY AT E A ++AM
Sbjct: 875 LRGIPYEATEVDI-DYWMTGTPIVAGMTRVLRKPNGRSQGDAVVYTATREGAGMIKAMRH 933
Query: 113 DRTNIRHRYIELFLNS 128
++ + HR IE+ + +
Sbjct: 934 NQM-MGHRTIEVLMRN 948
>gi|18408471|ref|NP_564871.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|334183676|ref|NP_001185329.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|15294238|gb|AAK95296.1|AF410310_1 At1g66260/T6J19_1 [Arabidopsis thaliana]
gi|23506135|gb|AAN31079.1| At1g66260/T6J19_1 [Arabidopsis thaliana]
gi|332196365|gb|AEE34486.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332196366|gb|AEE34487.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 295
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
TV++ L V +DI + ++ + + Y I+Y KNGRPSG A+V + DA+QAM K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYA-IHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
>gi|291232395|ref|XP_002736145.1| PREDICTED: RNA binding motif protein 12-like [Saccoglossus
kowalevskii]
Length = 983
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
V +RGLPF N I DFF P +++++N K G G V F T D +A++
Sbjct: 596 CVSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEK-GNCKGAGYVEFKTVHDFRKALA 654
Query: 112 KDRTNIRHRYIELF 125
++R I R++ +
Sbjct: 655 RNRQYIGTRFVTVM 668
>gi|240280637|gb|EER44141.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 406
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYK-NGRPSGEADVYFATHEDA 106
S G T+++R LP+ +D+VD FS + V +I Y+ NGR G V F T E+A
Sbjct: 303 SGGERSATIYVRNLPWSTCNEDLVDLFSTIGKVEKAEIQYEPNGRSRGTGVVEFDTAENA 362
Query: 107 MQAMSKDRTNIRHRY 121
T IR++Y
Sbjct: 363 -------ETAIRYQY 370
>gi|195376909|ref|XP_002047235.1| GJ12048 [Drosophila virilis]
gi|194154393|gb|EDW69577.1| GJ12048 [Drosophila virilis]
Length = 1091
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEADVYFATHEDAMQAM-S 111
V MR +PF+ + KDI+ FFS DI + +G+P+G+A V F + +A A S
Sbjct: 1016 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESPSEARSAFES 1075
Query: 112 KDRTNIRHRYIEL 124
K R I +R + L
Sbjct: 1076 KRRKQIFNRTVYL 1088
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ ++ LP+ N +DI +FF+ + ++ G G+A + F+T EDA AM KDR
Sbjct: 5 IRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDREK 63
Query: 117 IRHRYIELFLNS 128
+ + L L+S
Sbjct: 64 LMEVQVRLLLSS 75
>gi|452978819|gb|EME78582.1| hypothetical protein MYCFIDRAFT_212424 [Pseudocercospora fijiensis
CIRAD86]
Length = 252
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFS-PVVPVY-VDINY-KNGRPSGEADVYFATHEDAMQA 109
G + + LP V E I ++FS V PV V +NY NGR G A V+F A +A
Sbjct: 71 GDSKISVSNLPEDVTESMIKEYFSTSVAPVKRVIVNYGPNGRSRGSATVFFGKPTAAQEA 130
Query: 110 MSKDRTNI--RHRYIELFLNSSS 130
+ D T + R +E+ L+++S
Sbjct: 131 VRLDGTKVDGRAMRVEVLLSANS 153
>gi|428671200|gb|EKX72118.1| hypothetical protein BEWA_045820 [Babesia equi]
Length = 115
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
GH+ + ++GLPF ++D+VD F P V + + R G A VY A++A
Sbjct: 14 GHYRLLVKGLPFTATKEDLVDLFKGFDPSTVLLISRRKRFVGSAYVYLEEETKALEA 70
>gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein [Xenopus laevis]
Length = 877
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGE 95
P P R + S V+++GLP K ++DFF +V + I Y NG+ +GE
Sbjct: 414 PNPQSRPRSRSPHEHGFCVYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGE 473
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIEL 124
+ F ED A+ + + + +R++++
Sbjct: 474 GFLEFRNEEDYKSALCRHKQYMGNRFVQV 502
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 33 PGGFA--GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYK 88
PG A GP PG +V S+ G + ++ +PF V +I+DFF ++P V + +
Sbjct: 780 PGNMAVSGP-PG--FVAGSAKSGPTVIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFS 836
Query: 89 N-GRPSGEADVYFATHEDAMQA-MSKDRTNIRHRYIELFL 126
+ G P+GEA V F + ++AM A + + I R ++L L
Sbjct: 837 DKGMPTGEAMVAFESRDEAMAAVVDLNERPIGSRKVKLTL 876
>gi|344299844|gb|EGW30197.1| hypothetical protein SPAPADRAFT_63810 [Spathaspora passalidarum
NRRL Y-27907]
Length = 433
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP-VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK- 112
+++ + +PF ++KD+ D FS V DI GR G A + F ED A+ K
Sbjct: 111 NSIFIGNIPFDCSDKDVADIFSKDFTIVRSDIVTNRGRSRGMATIEFNNKEDVRSAIEKF 170
Query: 113 DRTNIRHRYIELFLNSSSP 131
DR+ R R E+F+ P
Sbjct: 171 DRSEYRGR--EIFVRQDYP 187
>gi|169599889|ref|XP_001793367.1| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
gi|160705342|gb|EAT89501.2| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
Length = 328
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYK-NGRPSGEADVYFATHEDAMQAMSK 112
T+++R LP+ + +D+V+ F+ + V +I Y+ NGR G V F EDA A++K
Sbjct: 228 TIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKQEDAETAIAK 286
>gi|195175076|ref|XP_002028289.1| GL16722 [Drosophila persimilis]
gi|194117421|gb|EDW39464.1| GL16722 [Drosophila persimilis]
Length = 1044
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++ LP+ N +DI +FF+ + ++ G G+A + F+T EDA AM KDR
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHIIGGE-MGDAFIAFSTDEDARCAMLKDRE 62
Query: 116 NIRHRYIELFLNS 128
+ + L L+S
Sbjct: 63 KLMEIQVRLLLSS 75
>gi|147775526|emb|CAN64942.1| hypothetical protein VITISV_043976 [Vitis vinifera]
Length = 311
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ + +R L +E D+ + FS P+ VYV I++K G G VYF EDA +A+
Sbjct: 215 ENVIQVRNLSEDTHEADLRELFSRFGPLTRVYVAIDHKFGLSRGFGYVYFVNKEDAERAI 274
Query: 111 SK 112
+K
Sbjct: 275 NK 276
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 39.3 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 31 DRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN---Y 87
D+P GP P R+ + P T+ +R L D+V F V VD+ +
Sbjct: 764 DKPKDGDGPAP-SRYAQDGVDP--KTLFVRNLSSLCRRDDLVTTFEKFAKV-VDVRMTRH 819
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIR 118
++GR +G A V FA EDA A++ D T +R
Sbjct: 820 RDGRFTGRAYVEFANEEDAKLALAADGTVVR 850
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,986,106,495
Number of Sequences: 23463169
Number of extensions: 139832646
Number of successful extensions: 274537
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 850
Number of HSP's that attempted gapping in prelim test: 269314
Number of HSP's gapped (non-prelim): 4289
length of query: 152
length of database: 8,064,228,071
effective HSP length: 115
effective length of query: 37
effective length of database: 9,660,930,932
effective search space: 357454444484
effective search space used: 357454444484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)