BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3068
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2
Length = 479
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 24 FNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYV 83
F +D+ + P + P V+ + P H VHMRGLPF+ N +DI++FF+P+ PV +
Sbjct: 371 FESDKEIELPKEMSEKLP--EAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRI 428
Query: 84 DINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133
+ Y + G+ +GEADV+F THEDA+ AM KDR++++HRYIELFLN S P+G
Sbjct: 429 TMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLN-SCPKG 478
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 114 RTNIRHRYIELF 125
R I +RYIE+F
Sbjct: 310 REEIGNRYIEIF 321
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ + +GLP+ +D+++FFS ++ +N ++G+ G+A + + +D +
Sbjct: 149 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLN-RDGKRRGDALIEMESEQDVQK 207
Query: 109 AMSKDRTNIRHRYIELF 125
A+ K R + RY+E++
Sbjct: 208 ALEKHRMYMGQRYVEVY 224
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|Q8VHV7|HNRH1_RAT Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus
GN=Hnrnph1 PE=1 SV=2
Length = 449
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV FATHEDA+ AMSKD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G GG+
Sbjct: 349 KANMQHRYVELFLNSTA--GASGGA 371
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF +E++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 72 KKDRETMGHRYVEVF 86
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF
PE=1 SV=3
Length = 415
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus
GN=Hnrnpf PE=1 SV=3
Length = 415
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf
PE=1 SV=3
Length = 415
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQ 108
+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D
Sbjct: 11 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKL 69
Query: 109 AMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 70 ALKKDRESMGHRYIEVF 86
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis
GN=HNRNPF PE=2 SV=3
Length = 415
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 275 RYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 333
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
FATHE+A+ AMSKDR N++HRYIELFLNS++
Sbjct: 334 EFATHEEAVAAMSKDRANMQHRYIELFLNSTT 365
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 111 SKDRTNIRHRYIELF 125
KDR ++ HRYIE+F
Sbjct: 72 KKDRESMGHRYIEVF 86
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens
GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 193 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 252
Query: 112 KDRTNIRHRYIELFLNSS 129
KD+ N++HRYIELFLNS+
Sbjct: 253 KDKNNMQHRYIELFLNST 270
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130
V FA+ E A A+ K + I HRYIE+F +S S
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIFRSSRS 94
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3
Length = 480
Score = 103 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 114 RTNIRHRYIELFLNSSSPRG 133
R+++ HRYIELFLN S P+G
Sbjct: 461 RSHVHHRYIELFLN-SCPKG 479
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 312 EEIGNRYIEIF 322
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV------PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +GLP+ +D+++FFS ++ +N ++G+ G+A + + +D +A+
Sbjct: 152 IRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQKAL 210
Query: 111 SKDRTNIRHRYIELF 125
K R + RY+E++
Sbjct: 211 EKHRMYMGQRYVEVY 225
>sp|Q5E9J1|HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF
PE=2 SV=3
Length = 414
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP++ E DI +FFSP+ PV V I +GR +GEADV FATHE+A+ AMSKD
Sbjct: 289 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 114 RTNIRHRYIELFLNSSS 130
R N++HRYIELFLNS++
Sbjct: 349 RANMQHRYIELFLNSTT 365
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++I+ FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129
A V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVFKSSQ 188
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQA 109
V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +D A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESEDDVKLA 70
Query: 110 MSKDRTNIRHRYIELF 125
+ KDR ++ HRYIE+F
Sbjct: 71 LKKDRESMGHRYIEVF 86
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + ++++ FFS I + GRPSGEA V + ++ A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ P+ V I +GR +GEADV FATHEDA+ AM+KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGSGFSRSELWAVHTS 151
+ N++HRY+ELFLNS++ G G S EL+ T+
Sbjct: 349 KANMQHRYVELFLNSTAGTSG-GAYDHSYVELFLNSTA 385
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 11/94 (11%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128
EA V FA+ E A +A+ K + I HRYIE+F +S
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +++ FFS I + GRPSGEA V + E+ A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 111 SKDRTNIRHRYIELFLNSS 129
KDR + HRY+E+F ++S
Sbjct: 72 KKDRETMGHRYVEVFKSNS 90
>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1
PE=2 SV=1
Length = 714
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF + ++ FFSP PV + + + +GRP+G+A V F+ E A A+
Sbjct: 328 VRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 KKHKDMLGKRYIELFKSTAA 407
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ + +DI+ F V++ +N++ GRPSGEA + + E A A
Sbjct: 452 VRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQ-GRPSGEAFIQMRSAERAFLAA 510
Query: 111 SK-DRTNIRHRYIELFLNSS 129
+ + +++ RY+E+F S+
Sbjct: 511 QRCHKRSMKERYVEVFACSA 530
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 227 IRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQ-GRRNGEALVRFESEEHRDLALQR 285
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 286 HKHHMGGRYIEVY 298
>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2
PE=2 SV=1
Length = 701
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKEILGKRYIELFRSTAA 408
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
++G V +RGLP+ DI+DF + + P V++ +N + GRPSG+A + +
Sbjct: 441 ATGSIRDCVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLN-QQGRPSGDAFIQMKS 499
Query: 103 HEDA-MQAMSKDRTNIRHRYIELF 125
+ A M A + ++ RY+E+F
Sbjct: 500 ADKAFMVAQKCHKKMMKDRYVEVF 523
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFVNSEQRDLALER 286
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 287 HKHHMGSRYIEVY 299
>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2
PE=2 SV=2
Length = 736
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 KKHKQILGKRYIELFRSTAA 406
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP----VVP--VYVDINYKNGRPSGEADVYFAT 102
++G + +RGLP+ +DI++F + P V++ +N + GRPSG+A + +
Sbjct: 444 TTGNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLN-QQGRPSGDAFIQMKS 502
Query: 103 HEDA-MQAMSKDRTNIRHRYIELFLNSS 129
+ A M A + ++ RY+E+F S+
Sbjct: 503 ADRAFMVAQKCHKKMMKDRYVEVFQCST 530
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + V + +N + GR +GEA V F E A+ +
Sbjct: 226 IRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQ-GRRNGEALVRFINSEHRDMALDR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 285 HKHHMGSRYIEVY 297
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 57 VHMRGLPFRVNEKDIVDFFS----PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V M+GLP+ KDI+ FF V V N+ +G+ SGEA V F + + A +A+++
Sbjct: 661 VRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNW-SGQRSGEALVTFPSEKAARRAVAE 719
>sp|Q22708|SYM2_CAEEL RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2
SV=3
Length = 618
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ + I FF P+ + I +GRP+G+A V F T EDA Q + K R
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHR 342
Query: 115 TNIRHRYIELFLNSSS 130
I RYIELF ++++
Sbjct: 343 QVIGQRYIELFKSTAA 358
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 60 RGLPFRVNEKDIVDFFS--PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTN 116
RGLP++ ++ + FF+ +VP + + + GR +GE V F++ E A+ + R
Sbjct: 186 RGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKRHRNF 245
Query: 117 IRHRYIELF 125
+ RYIE++
Sbjct: 246 LLSRYIEVY 254
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVPVY-VDINYKN-GRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + IV F F+ +V V + Y N G PSGEA + + A +
Sbjct: 391 VRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAA 450
Query: 112 KDRTNI-----RHRYIELFLNSS 129
N + RYIE+F S+
Sbjct: 451 GVHNNFMSVGKKKRYIEVFQASA 473
>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1
PE=2 SV=2
Length = 680
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 387 RKHKELLGKRYIELFRSTAA 406
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 504
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 505 QKYHKKTMKDRYVEVFQCSA 524
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 226 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 284
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 285 HKHHMGTRYIEVY 297
>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1
PE=1 SV=2
Length = 681
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + N++ RY+E+F S+
Sbjct: 506 QKCHKKNMKDRYVEVFQCSA 525
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 227 VRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 285
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 286 HKHHMGTRYIEVY 298
>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus
GN=Esrp1 PE=2 SV=2
Length = 677
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 388 RKHKDLLGKRYIELFRSTAA 407
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 506 QKYHKKTMKDRYVEVFQCSA 525
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQ 108
G+ V RGLP++ +++DI FF + + +N + GR +GEA V F + E
Sbjct: 223 GNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDL 281
Query: 109 AMSKDRTNIRHRYIELF 125
A+ + + ++ RYIE++
Sbjct: 282 ALQRHKHHMGTRYIEVY 298
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F + P
Sbjct: 354 REYMGGRYIEVFREKNVP 371
>sp|A8WPC5|SYM2_CAEBR RNA-binding protein sym-2 OS=Caenorhabditis briggsae GN=sym-2 PE=3
SV=2
Length = 634
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVY--FATHEDAMQAMSK 112
V MRGLP+ + I FF P+ + I +GRP+G D + F T EDA Q + K
Sbjct: 287 VRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLLK 346
Query: 113 DRTNIRHRYIELFLNSSS 130
R I RYIELF ++++
Sbjct: 347 HRQVIGQRYIELFKSTAA 364
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVPVY-VDINYKN-GRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + IV+F F+ +V V + Y N G PSGEA + + + A S
Sbjct: 397 VRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMISEQAAAATAS 456
Query: 112 KDRTNI-----RHRYIELFLNSS 129
N + RYIE+F +S+
Sbjct: 457 GVHNNFMCVGKKKRYIEVFQSSA 479
>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis
GN=esrp1 PE=2 SV=1
Length = 687
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKELLGKRYIELFRSTAA 408
Score = 37.7 bits (86), Expect = 0.028, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG++ + + + A A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAYLAA 506
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSA 526
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 286
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1
PE=2 SV=1
Length = 688
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELFLNSSS 130
K + + RYIELF ++++
Sbjct: 389 KKHKELLGKRYIELFRSTAA 408
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI++F FS + V++ +N++ GRPSG++ + + + A A
Sbjct: 448 IRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQ-GRPSGDSFIQMKSADRAYLAA 506
Query: 111 SK-DRTNIRHRYIELFLNSS 129
K + ++ RY+E+F S+
Sbjct: 507 QKCHKKTMKDRYVEVFQCSA 526
Score = 36.6 bits (83), Expect = 0.066, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ RGLP++ +++DI FF + + +N + GR +GEA V F + E A+ +
Sbjct: 228 IRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ-GRRNGEALVRFVSEEHRDLALQR 286
Query: 113 DRTNIRHRYIELF 125
+ ++ +RYIE++
Sbjct: 287 HKHHMGNRYIEVY 299
>sp|B2RYJ8|ESRP2_RAT Epithelial splicing regulatory protein 2 OS=Rattus norvegicus
GN=Esrp2 PE=2 SV=1
Length = 716
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 349 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 408
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 409 RRHKGMLGKRYIELFRSTAA 428
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 458 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 516
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRSEL 145
E A+ A + + ++ RY+E+ S+ V GGS SRS L
Sbjct: 517 VERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGS-LSRSGL 561
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPS 93
GP D NE+ V RGLP++ +++D+ FF + V + +N + GR +
Sbjct: 235 GPCKADVVDNET------VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQ-GRRN 287
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GEA + F E A+ + + ++ RYIE++
Sbjct: 288 GEALIRFEDSEQRDLALQRHKHHMGVRYIEVY 319
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV--------DINYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELFLNSSS-----------PRGGVGGSGFSRSELWA 147
+A+ + R +I RYIELF ++++ P+ G G S+ L A
Sbjct: 442 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIA 493
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
G+ V RGLP++ +++DI FF + + GR +GEA + F E A
Sbjct: 277 GNCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMA 336
Query: 110 MSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSRSE 144
+ + + +I RYIE++ S + G + ++
Sbjct: 337 LKRHKHHIGTRYIEVYRASGEDFLAIAGGASNEAQ 371
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+SG + + +RGLP+ + I+ F V++ IN + G+PSGEA +
Sbjct: 540 TSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQ-GQPSGEAFIQMDL 598
Query: 103 HEDAMQAMSKDRTNI-----RHRYIELF 125
E A + + ++RYIE+F
Sbjct: 599 EESARLCAQRRHNHYMMFGKKYRYIEVF 626
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
+TV +RG PF V EK++++F +P+ PV + I +G +G V ++ E+ +A+ +
Sbjct: 293 YTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 352
Query: 114 RTNIRHRYIELFLNSSSP 131
R + RYIE+F +P
Sbjct: 353 RDYMGGRYIEVFREKQAP 370
>sp|Q8K0G8|ESRP2_MOUSE Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2
PE=2 SV=1
Length = 717
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 410 RRHKGMLGKRYIELFRSTAA 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPRGGV--GGSGFSRSEL 145
E A+ A + + ++ RY+E+ S+ V GGS SRS L
Sbjct: 518 VERALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGGS-LSRSGL 562
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++D+ FF + V + +N + GR +GEA + F E A+ +
Sbjct: 249 VRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQ-GRRNGEALIRFVDSEQRDLALQR 307
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 308 HKHHMGVRYIEVY 320
>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2
PE=1 SV=1
Length = 727
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELFLNSSS 130
+ + + RYIELF ++++
Sbjct: 420 RRHKGMLGKRYIELFRSTAA 439
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F V++ +N + GRPSG+A + +
Sbjct: 469 APGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 527
Query: 103 HEDAMQAMSK-DRTNIRHRYIELFLNSSSPR------GGVGGSGFS 141
E A+ A + + ++ RY+E+ S+ G +G SG S
Sbjct: 528 AERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMS 573
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V RGLP++ +++D+ FF + V + +N + GR +GEA + F E A+ +
Sbjct: 259 VRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQ-GRRNGEALIRFVDSEQRDLALQR 317
Query: 113 DRTNIRHRYIELF 125
+ ++ RYIE++
Sbjct: 318 HKHHMGVRYIEVY 330
>sp|Q9URV0|YBLC_SCHPO Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=4 SV=1
Length = 274
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK-DR 114
V + L ++V EKD++ F P+ V +NY + GR G DVYF T +DA A
Sbjct: 87 VRVENLHYQVLEKDVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 115 TNIRHRYIEL 124
TN++ I++
Sbjct: 147 TNLKGSEIQI 156
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V I Y + G P GEA V + +A+ A+
Sbjct: 760 VMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSAVK 817
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 32 RPGGFAGPRPG---DRWVNES-SGPGHH-TVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN 86
RP RPG ++ E SG G +++R LPF V + ++ FF+ V DI
Sbjct: 373 RPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIY 432
Query: 87 Y---KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY--IELFL 126
G GEA V F + E AM+A +R N R R+ IE+ L
Sbjct: 433 LLCDDKGVGLGEALVRFKSEEQAMKA---ERLN-RQRFLGIEVLL 473
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 215
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 216 FMGSRFIEVMQGSEQQWIEFGGTA 239
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V + LPF+ N +I+DFF V+P V + Y + G P GEA V + +A+ A+
Sbjct: 762 VKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGLPIGEAIVAMTNYNEALAAVK 819
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF + ++ G+ GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHIIGGK-VGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSS 129
I+ +ELFL+S
Sbjct: 63 FIKDSSVELFLSSK 76
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 32 RPGGFAGPRPG---DRWVNES-SGPGHH-TVHMRGLPFRVNEKDIVDFFSPVVPVYVDIN 86
RP RPG ++ E SG G +++R LPF V + ++ FF+ V DI
Sbjct: 373 RPESLEKERPGRVSQKYSQEGFSGSGQKLCIYIRNLPFDVTKGEVQKFFADFSLVEDDIY 432
Query: 87 Y---KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY--IELFL 126
G GEA V F + E AM+A +R N R R+ IE+ L
Sbjct: 433 LLCDDKGVGLGEALVRFKSEEQAMKA---ERLN-RQRFLGIEVLL 473
>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1
Length = 932
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 58 HMRGLPFRVNEKDIVDFFS--PV----VPVYVDINYKNGRPSGEADVYFATHEDAMQA-- 109
H+ +PF + + D++ F PV V V VD NG+ G+A V F +DA ++
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVD---NNGQGLGQALVQFKNEDDARKSER 603
Query: 110 MSKDRTNIRHRYIEL 124
+ + + N R ++ +
Sbjct: 604 LHRKKLNGREAFVHV 618
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1
Length = 932
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 846 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 905
Query: 102 THEDAMQAM--SKDRTNIRHRYIELFL 126
+ ++A A+ DR I R ++L L
Sbjct: 906 SRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 58 HMRGLPFRVNEKDIVDFFS--PV----VPVYVDINYKNGRPSGEADVYFATHEDAMQA-- 109
H+ +PF + + D++ F PV V V VD NG+ G+A V F +DA ++
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVD---NNGQGLGQALVQFKNEDDARKSER 603
Query: 110 MSKDRTNIRHRYIEL 124
+ + + N R ++ +
Sbjct: 604 LHRKKLNGREAFVHV 618
>sp|Q5RFT7|RB12B_PONAB RNA-binding protein 12B OS=Pongo abelii GN=RBM12B PE=2 SV=1
Length = 761
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSS 130
+ R+IE+ S
Sbjct: 217 FMGSRFIEVMQGSEQ 231
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 31 DRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY--- 87
DRPG + ++ E + +++R PF V + ++ FF+ + DI
Sbjct: 381 DRPGHVS-----QKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYD 435
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI 122
G GEA V F + E AM+A +R N R R++
Sbjct: 436 DKGVGLGEALVKFKSEEQAMKA---ERLN-RRRFL 466
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
S P VH++ L ++E+D+ +FF + + + YK+ + A V F T +D
Sbjct: 278 SRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDY 337
Query: 107 MQAMSKDRTNIRHRYIEL 124
A+S +T +++R + +
Sbjct: 338 NTALSLHKTVLQYRPVHI 355
>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1
Length = 932
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 45 WVNESSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFA 101
+ + S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F
Sbjct: 848 FASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 907
Query: 102 THEDAMQAM 110
+ ++A A+
Sbjct: 908 SRDEATAAV 916
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ DFF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 58 HMRGLPFRVNEKDIVDFFS--PV----VPVYVDINYKNGRPSGEADVYFATHEDAMQA-- 109
H+ +PF + + D++ F PV V V VD NG+ G+A V F +DA ++
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVD---NNGQGLGQALVQFKNEDDARKSER 603
Query: 110 MSKDRTNIRHRYIEL 124
+ + + N R ++ +
Sbjct: 604 LHRKKLNGREAFVHV 618
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3
Length = 992
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINY-KNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF V+P V + Y + G P+GEA V F + ++
Sbjct: 910 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 969
Query: 106 AMQAM--SKDRTNIRHRYIELFL 126
A A+ DR I R ++L L
Sbjct: 970 ATAAVIDLNDRP-IGSRKVKLVL 991
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 113 DRTNIRHRYIEL 124
+ + +R+I++
Sbjct: 491 HKQYMGNRFIQV 502
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
V + G+PF E D+ +FF + V + GR +G V F + +D +A+ ++R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
Query: 116 NIRHRYIEL 124
+ RY+E+
Sbjct: 366 LMIQRYVEV 374
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ ++GLP DI FFS + ++ G GEA + FAT EDA M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGE-LGEAFIVFATDEDARLGMMRTGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ + L L+S +
Sbjct: 63 TIKGSKVTLLLSSKT 77
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 58 HMRGLPFRVNEKDIVDFFS--PV----VPVYVDINYKNGRPSGEADVYFATHEDAMQA-- 109
H+ +PF + + D++ F PV V V VD NG+ G+A V F T +DA ++
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDESAVHVLVD---NNGQGLGQALVQFKTEDDAHKSEH 603
Query: 110 MSKDRTNIRHRYIEL 124
+ + + N R ++ +
Sbjct: 604 LHRKKLNGREAFVHI 618
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ D+FS V+ V V + K G G V FA +E ++ MS+ R I
Sbjct: 111 GLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQ-RHMI 169
Query: 118 RHRYIELFL-NSSSP 131
R+ + L NS SP
Sbjct: 170 DGRWCDCKLPNSKSP 184
>sp|Q8IXT5|RB12B_HUMAN RNA-binding protein 12B OS=Homo sapiens GN=RBM12B PE=1 SV=2
Length = 1001
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ +RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRS 216
Query: 116 NIRHRYIELFLNSSSPRGGVGGSG 139
+ R+IE+ S GG+
Sbjct: 217 FMGSRFIEVMQGSEQQWIEFGGNA 240
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGG 62
Query: 116 NIRHRYIELFLNSSS 130
I+ +ELFL+S +
Sbjct: 63 FIKDSSVELFLSSKA 77
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
S P VH++ L ++E+D+ +FF + + + YK+ + A V F T +D
Sbjct: 278 SRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDY 337
Query: 107 MQAMSKDRTNIRHRYIEL 124
A+S +T +++R + +
Sbjct: 338 NTALSLHKTVLQYRPVHI 355
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 32 RPGGFAGPRPG---DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
R G RPG ++ E + +++R PF V + ++ FF+ + DI
Sbjct: 374 RSGSLERDRPGHVSQKYSQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLL 433
Query: 88 --KNGRPSGEADVYFATHEDAMQAMSKDR 114
G GEA V F + E AM+A +R
Sbjct: 434 YDDKGVGLGEALVKFKSEEQAMKAERLNR 462
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 66 VNEKDIVDFFSPVVPVY-----VDINYKNGRPSGEADVYFATHEDAMQAM-SKDRTNIRH 119
VNE ++D F+ V PV+ D+ + R G A V FA EDA +AM S + IR
Sbjct: 70 VNESHLLDLFNQVAPVHNLRVCRDLTH---RSLGYAYVNFANPEDASRAMESLNYAPIRD 126
Query: 120 RYIELFLNSSSPRGGVGGSG 139
R I + L++ P + G G
Sbjct: 127 RPIRIMLSNRDPSTRLSGKG 146
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV---YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
T+ +R L F+ + D+ +FFS V P+ V N + G G V F+ EDA +A +
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 113 DRTNIRHRYIELFLNSSSPR 132
+ H I L L+ ++PR
Sbjct: 66 LKNKKLHGRI-LRLDFATPR 84
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ D+FS V+ V V + K G G V F +E ++ MS+ R I
Sbjct: 110 GLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMI 168
Query: 118 RHRYIELFLNSS 129
R+ + L +S
Sbjct: 169 DGRWCDCKLPNS 180
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSG 94
G RP R ++ + +T + LP +NE ++ D F V+ +++ + G P G
Sbjct: 160 GMRPDGRQIDRNRS-DENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKG 218
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131
A V F + +DA +A++ + +IR ++ L + + P
Sbjct: 219 FAFVTFESRDDAARAIA-ELNDIRMYHMVLKVEWTRP 254
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 31 DRPGGFAGPRP-GDRWVNE------SSGPGHHT---VHMRGLPFRVNEKDIVDFFSP--- 77
+RP ++ P+P D+W ++ G G T + + L F V++ DI + F+
Sbjct: 41 NRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGT 100
Query: 78 VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ VD + ++GR G ADV+F DA++AM +
Sbjct: 101 LKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQ 134
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM-SKDR 114
T+ + L + +E+ + + F + + N GRP G A V F T EDA +A+ S +
Sbjct: 462 TLIVNNLSYAASEETLQELFKKATSIKMPQN-NQGRPKGYAFVEFPTAEDAKEALNSCNN 520
Query: 115 TNIRHRYIELFLNSSSPRGG 134
T I R I L +S S + G
Sbjct: 521 TEIEGRAIRLEFSSPSWQKG 540
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ ++FS V+ V V + K G G V F +E ++ MS+ R I
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMI 168
Query: 118 RHRYIELFLNSS 129
R+ + L +S
Sbjct: 169 DGRWCDCKLPNS 180
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 61 GLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
GLP++ E+D+ ++FS V+ V V + K G G V F +E ++ MS+ R I
Sbjct: 110 GLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMI 168
Query: 118 RHRYIELFLNSS 129
R+ + L +S
Sbjct: 169 DGRWCDCKLPNS 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,647,515
Number of Sequences: 539616
Number of extensions: 3252436
Number of successful extensions: 6829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 6526
Number of HSP's gapped (non-prelim): 289
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)