Query psy3068
Match_columns 152
No_of_seqs 177 out of 1325
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:52:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4211|consensus 99.8 2.7E-20 5.8E-25 159.3 7.8 98 54-151 10-118 (510)
2 KOG0122|consensus 99.8 2.9E-19 6.3E-24 142.1 12.3 122 2-130 144-269 (270)
3 PLN03134 glycine-rich RNA-bind 99.8 8.2E-18 1.8E-22 125.6 11.7 77 55-131 35-115 (144)
4 KOG4211|consensus 99.7 2.6E-18 5.6E-23 147.2 5.3 78 54-131 103-183 (510)
5 TIGR01659 sex-lethal sex-letha 99.7 7.1E-16 1.5E-20 129.7 13.6 77 53-129 106-186 (346)
6 PF14259 RRM_6: RNA recognitio 99.6 9.3E-16 2E-20 99.6 8.4 67 57-123 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 8.6E-16 1.9E-20 127.3 9.5 77 55-131 270-350 (352)
8 PF00076 RRM_1: RNA recognitio 99.6 1E-15 2.3E-20 98.3 7.1 67 57-123 1-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1E-15 2.2E-20 126.8 8.8 77 55-131 4-84 (352)
10 PLN03120 nucleic acid binding 99.6 7.3E-15 1.6E-19 118.7 8.8 74 55-129 5-79 (260)
11 TIGR01659 sex-lethal sex-letha 99.6 2.3E-14 5E-19 120.6 11.3 77 54-130 193-275 (346)
12 PLN03121 nucleic acid binding 99.5 5.7E-14 1.2E-18 112.3 9.2 73 55-128 6-79 (243)
13 KOG0125|consensus 99.5 3.3E-14 7.1E-19 117.4 7.1 77 54-130 96-174 (376)
14 TIGR01622 SF-CC1 splicing fact 99.5 7.1E-14 1.5E-18 119.9 8.9 76 54-129 89-167 (457)
15 KOG0121|consensus 99.5 5.3E-14 1.1E-18 103.0 6.6 74 54-127 36-113 (153)
16 KOG0149|consensus 99.5 6.1E-14 1.3E-18 111.3 5.7 76 54-129 12-90 (247)
17 TIGR01628 PABP-1234 polyadenyl 99.5 2.1E-13 4.6E-18 120.2 8.7 75 56-130 2-80 (562)
18 smart00362 RRM_2 RNA recogniti 99.4 5.7E-13 1.2E-17 84.1 7.9 69 56-124 1-71 (72)
19 KOG4207|consensus 99.4 1.9E-13 4E-18 107.1 6.6 74 55-128 14-91 (256)
20 KOG0107|consensus 99.4 6E-13 1.3E-17 101.7 8.4 76 54-132 10-87 (195)
21 TIGR01645 half-pint poly-U bin 99.4 3.1E-13 6.7E-18 120.6 7.8 73 55-127 108-184 (612)
22 cd00590 RRM RRM (RNA recogniti 99.4 1.1E-12 2.5E-17 83.1 8.2 70 56-125 1-73 (74)
23 COG0724 RNA-binding proteins ( 99.4 6.5E-13 1.4E-17 102.2 8.3 75 54-128 115-193 (306)
24 KOG0113|consensus 99.4 7.7E-13 1.7E-17 108.1 8.9 77 55-131 102-182 (335)
25 TIGR01645 half-pint poly-U bin 99.4 7.1E-13 1.5E-17 118.3 9.4 78 54-131 204-285 (612)
26 TIGR01622 SF-CC1 splicing fact 99.4 1E-12 2.3E-17 112.7 9.5 75 54-128 186-264 (457)
27 TIGR01628 PABP-1234 polyadenyl 99.4 9.7E-13 2.1E-17 116.0 8.7 76 55-130 286-364 (562)
28 smart00360 RRM RNA recognition 99.4 1.4E-12 3.1E-17 81.8 6.9 66 59-124 1-70 (71)
29 KOG1365|consensus 99.4 7.9E-14 1.7E-18 117.3 1.1 78 54-131 161-244 (508)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.4 1.5E-12 3.3E-17 112.9 9.0 75 55-129 296-374 (509)
31 TIGR01648 hnRNP-R-Q heterogene 99.4 2.4E-12 5.1E-17 114.5 9.4 71 55-131 234-308 (578)
32 TIGR01648 hnRNP-R-Q heterogene 99.4 1.5E-12 3.2E-17 115.8 7.9 73 54-126 58-134 (578)
33 KOG4212|consensus 99.4 2.4E-12 5.2E-17 110.0 8.3 75 55-129 45-123 (608)
34 KOG1365|consensus 99.4 4.1E-13 9E-18 113.0 3.4 78 55-132 281-364 (508)
35 KOG0114|consensus 99.3 4.8E-12 1E-16 89.7 8.0 75 54-129 18-94 (124)
36 PLN03213 repressor of silencin 99.3 4.6E-12 9.9E-17 109.7 7.7 74 54-129 10-87 (759)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 8.5E-12 1.8E-16 108.8 9.1 72 55-130 3-78 (481)
38 KOG0131|consensus 99.3 2.2E-12 4.9E-17 99.2 4.3 75 54-128 9-87 (203)
39 KOG0127|consensus 99.3 6.3E-12 1.4E-16 109.6 6.8 77 55-131 293-379 (678)
40 KOG0108|consensus 99.2 1.8E-11 4E-16 105.6 7.6 77 55-131 19-99 (435)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.6E-11 7.8E-16 104.9 9.1 75 55-129 395-479 (481)
42 KOG0127|consensus 99.2 2.7E-11 5.8E-16 105.8 7.3 76 55-130 118-196 (678)
43 KOG0126|consensus 99.2 5.9E-12 1.3E-16 97.0 1.9 75 55-129 36-114 (219)
44 KOG0117|consensus 99.2 3.1E-11 6.8E-16 103.1 6.1 71 55-131 260-332 (506)
45 TIGR01642 U2AF_lg U2 snRNP aux 99.2 2.6E-11 5.7E-16 105.2 5.7 69 54-126 175-256 (509)
46 KOG0105|consensus 99.2 1.1E-10 2.4E-15 90.4 7.6 74 55-129 7-82 (241)
47 KOG4307|consensus 99.2 4.9E-10 1.1E-14 100.2 12.7 77 50-126 863-943 (944)
48 KOG0130|consensus 99.2 9.1E-11 2E-15 86.8 6.6 81 50-131 69-153 (170)
49 KOG0533|consensus 99.1 2.2E-10 4.7E-15 92.3 7.4 77 54-130 83-162 (243)
50 KOG0117|consensus 99.1 4.4E-10 9.5E-15 96.2 9.4 74 54-127 83-161 (506)
51 KOG0148|consensus 99.1 2.4E-10 5.3E-15 92.7 7.0 78 54-131 62-143 (321)
52 KOG0111|consensus 99.1 1.6E-10 3.4E-15 91.7 5.5 78 55-132 11-92 (298)
53 smart00361 RRM_1 RNA recogniti 99.1 4.4E-10 9.6E-15 73.7 6.6 57 68-124 2-69 (70)
54 KOG4212|consensus 99.1 6.8E-10 1.5E-14 95.1 8.9 69 55-126 537-607 (608)
55 KOG4209|consensus 99.1 6.7E-10 1.4E-14 89.0 8.0 82 55-136 102-186 (231)
56 KOG0148|consensus 99.0 9.9E-10 2.1E-14 89.2 8.6 77 50-130 160-238 (321)
57 KOG0145|consensus 99.0 5.9E-10 1.3E-14 90.3 6.8 78 55-132 42-123 (360)
58 KOG0145|consensus 99.0 3.7E-09 8.1E-14 85.7 9.7 76 54-129 278-357 (360)
59 KOG4205|consensus 99.0 5.6E-10 1.2E-14 92.8 4.0 78 55-132 7-87 (311)
60 KOG0144|consensus 98.9 5.9E-10 1.3E-14 95.2 3.8 79 54-132 124-208 (510)
61 KOG0123|consensus 98.9 2.5E-09 5.4E-14 90.9 7.2 74 56-131 78-154 (369)
62 KOG1995|consensus 98.9 1.8E-09 3.9E-14 90.2 5.9 78 54-131 66-155 (351)
63 KOG4205|consensus 98.9 1.3E-09 2.7E-14 90.7 4.6 78 55-132 98-178 (311)
64 KOG0116|consensus 98.9 8.3E-09 1.8E-13 88.9 7.9 75 55-129 289-366 (419)
65 KOG0147|consensus 98.9 3.9E-09 8.4E-14 92.2 5.9 71 57-127 281-355 (549)
66 PF13893 RRM_5: RNA recognitio 98.8 1.5E-08 3.3E-13 63.2 6.7 54 71-127 1-56 (56)
67 KOG0144|consensus 98.8 8.1E-09 1.8E-13 88.3 6.2 76 55-130 35-117 (510)
68 KOG0124|consensus 98.8 6.9E-09 1.5E-13 87.5 4.3 72 55-126 114-189 (544)
69 KOG0110|consensus 98.7 2.5E-08 5.5E-13 89.3 6.4 73 56-128 517-596 (725)
70 KOG0105|consensus 98.7 2.6E-07 5.6E-12 71.9 11.0 73 54-131 115-193 (241)
71 KOG1548|consensus 98.7 4.1E-08 8.9E-13 82.0 6.8 78 54-131 134-222 (382)
72 KOG4307|consensus 98.7 1.9E-08 4.1E-13 90.2 5.1 74 55-131 3-78 (944)
73 KOG0123|consensus 98.6 1E-07 2.2E-12 81.1 7.7 73 55-131 2-76 (369)
74 KOG4208|consensus 98.6 1.7E-07 3.8E-12 73.4 7.1 73 55-127 50-127 (214)
75 KOG0109|consensus 98.6 5.1E-08 1.1E-12 80.0 4.3 70 55-130 3-74 (346)
76 KOG0131|consensus 98.5 1.1E-07 2.3E-12 73.6 4.8 77 55-131 97-178 (203)
77 KOG0109|consensus 98.4 3.9E-07 8.5E-12 74.9 5.4 70 55-130 79-150 (346)
78 KOG4454|consensus 98.4 6.8E-08 1.5E-12 76.6 1.0 74 54-128 9-85 (267)
79 KOG0110|consensus 98.4 1.7E-07 3.6E-12 84.1 3.2 74 54-127 613-690 (725)
80 KOG0415|consensus 98.4 5.6E-07 1.2E-11 75.8 5.6 78 51-128 236-317 (479)
81 KOG0132|consensus 98.4 7.2E-07 1.6E-11 81.0 6.4 71 54-128 421-493 (894)
82 KOG0153|consensus 98.3 1.1E-06 2.4E-11 73.5 6.6 71 55-129 229-302 (377)
83 KOG0146|consensus 98.3 6.1E-07 1.3E-11 73.3 4.4 82 50-131 281-366 (371)
84 PF04059 RRM_2: RNA recognitio 98.3 5.5E-06 1.2E-10 58.2 7.6 76 55-130 2-87 (97)
85 KOG4206|consensus 98.3 3.6E-06 7.9E-11 66.7 7.2 76 55-131 10-91 (221)
86 KOG0124|consensus 98.1 4.7E-06 1E-10 70.7 5.9 78 54-131 210-291 (544)
87 KOG4661|consensus 98.1 1.9E-05 4.2E-10 70.2 9.7 77 55-131 406-486 (940)
88 KOG1457|consensus 98.1 7.2E-06 1.6E-10 65.5 6.2 73 55-127 35-115 (284)
89 KOG0146|consensus 98.1 3E-06 6.6E-11 69.2 3.9 77 55-131 20-102 (371)
90 KOG0226|consensus 98.1 2.1E-06 4.5E-11 69.5 2.6 75 54-128 190-268 (290)
91 KOG4210|consensus 98.0 5.2E-06 1.1E-10 68.5 4.4 77 55-131 186-265 (285)
92 KOG0106|consensus 98.0 6.8E-06 1.5E-10 65.3 4.2 67 56-128 3-71 (216)
93 KOG0106|consensus 98.0 9.9E-06 2.2E-10 64.3 4.7 69 54-127 99-168 (216)
94 PF11608 Limkain-b1: Limkain b 98.0 2.6E-05 5.7E-10 53.4 5.9 65 55-127 3-74 (90)
95 KOG0147|consensus 97.9 3.6E-06 7.8E-11 73.9 1.2 77 54-130 179-258 (549)
96 PF08777 RRM_3: RNA binding mo 97.8 0.00012 2.5E-09 52.0 6.9 68 55-125 2-75 (105)
97 KOG1457|consensus 97.4 9E-05 2E-09 59.3 2.6 57 54-112 210-267 (284)
98 KOG0129|consensus 97.4 0.00034 7.3E-09 61.4 5.9 73 55-128 371-452 (520)
99 KOG0120|consensus 97.3 0.00014 3.1E-09 64.0 2.9 76 54-129 289-368 (500)
100 KOG4660|consensus 97.2 0.00022 4.8E-09 62.9 2.9 66 55-123 76-143 (549)
101 KOG0128|consensus 97.2 2.6E-05 5.6E-10 71.6 -3.5 75 55-130 668-745 (881)
102 KOG4206|consensus 97.2 0.0015 3.2E-08 52.0 6.7 73 52-127 144-219 (221)
103 KOG0151|consensus 97.1 0.00082 1.8E-08 61.2 5.7 70 55-124 175-251 (877)
104 PF10309 DUF2414: Protein of u 97.1 0.0015 3.2E-08 42.3 5.2 52 55-112 6-61 (62)
105 KOG4849|consensus 97.1 0.0003 6.4E-09 59.6 2.4 74 55-128 81-160 (498)
106 KOG0128|consensus 97.0 0.00023 5E-09 65.5 1.3 75 55-129 737-814 (881)
107 KOG1190|consensus 97.0 0.0024 5.1E-08 55.1 6.6 73 54-128 414-489 (492)
108 KOG0129|consensus 96.9 0.0027 5.9E-08 55.8 7.0 59 54-112 259-325 (520)
109 KOG1190|consensus 96.9 0.0059 1.3E-07 52.7 8.7 75 54-131 297-374 (492)
110 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0022 4.7E-08 40.0 3.7 51 55-110 2-53 (53)
111 KOG1456|consensus 96.7 0.0051 1.1E-07 52.6 6.8 65 55-122 32-99 (494)
112 KOG1548|consensus 96.5 0.0059 1.3E-07 51.6 5.9 74 54-128 265-350 (382)
113 COG5175 MOT2 Transcriptional r 96.4 0.009 1.9E-07 50.6 6.1 72 55-126 115-199 (480)
114 KOG2314|consensus 96.3 0.0085 1.9E-07 53.5 5.6 71 54-124 58-138 (698)
115 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.013 2.7E-07 41.3 5.3 72 55-127 7-89 (100)
116 PF08675 RNA_bind: RNA binding 96.1 0.028 6.2E-07 38.5 6.3 53 54-112 9-61 (87)
117 KOG2591|consensus 95.4 0.024 5.3E-07 50.7 4.8 64 55-123 176-245 (684)
118 KOG1456|consensus 95.4 0.56 1.2E-05 40.5 12.7 73 55-130 288-363 (494)
119 KOG4676|consensus 95.2 0.022 4.8E-07 49.0 3.7 73 55-127 8-86 (479)
120 KOG0115|consensus 95.1 0.017 3.7E-07 47.1 2.8 77 55-131 32-115 (275)
121 PF08952 DUF1866: Domain of un 95.1 0.077 1.7E-06 39.9 5.9 73 52-130 25-107 (146)
122 KOG1855|consensus 94.7 0.028 6.1E-07 48.8 3.1 59 55-113 232-306 (484)
123 PF03468 XS: XS domain; Inter 94.4 0.023 5E-07 41.0 1.6 58 55-112 9-76 (116)
124 KOG0120|consensus 94.3 0.14 3.1E-06 45.4 6.5 50 80-129 436-491 (500)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 93.1 0.28 6E-06 37.7 5.7 60 55-114 8-77 (176)
126 KOG3152|consensus 92.9 0.052 1.1E-06 44.3 1.4 67 55-121 75-157 (278)
127 KOG2202|consensus 92.7 0.04 8.7E-07 44.8 0.5 48 80-127 96-145 (260)
128 KOG1996|consensus 90.4 0.58 1.3E-05 39.2 4.9 57 68-124 300-361 (378)
129 PF11767 SET_assoc: Histone ly 89.6 1.6 3.5E-05 28.4 5.7 52 65-122 11-63 (66)
130 PF07576 BRAP2: BRCA1-associat 89.2 4.3 9.4E-05 28.9 8.2 65 55-119 14-81 (110)
131 KOG4210|consensus 87.1 0.36 7.7E-06 40.0 1.7 71 54-124 88-162 (285)
132 KOG4285|consensus 86.8 1 2.2E-05 37.8 4.1 70 56-130 199-270 (350)
133 KOG0112|consensus 86.0 1.1 2.5E-05 42.3 4.4 73 55-130 456-531 (975)
134 KOG2135|consensus 85.9 0.32 7E-06 42.8 0.9 70 56-129 374-445 (526)
135 KOG2068|consensus 85.2 0.47 1E-05 40.0 1.5 75 55-129 78-162 (327)
136 KOG2193|consensus 85.1 1.1 2.4E-05 39.4 3.7 67 56-127 3-73 (584)
137 PF03880 DbpA: DbpA RNA bindin 81.6 5.6 0.00012 25.9 5.3 59 62-127 9-74 (74)
138 PF04847 Calcipressin: Calcipr 80.5 4.3 9.2E-05 31.5 5.1 61 67-131 8-72 (184)
139 KOG0804|consensus 79.0 6.9 0.00015 34.6 6.3 66 54-119 74-142 (493)
140 KOG4660|consensus 75.3 4 8.7E-05 36.7 4.0 63 55-117 362-456 (549)
141 KOG0112|consensus 73.8 0.77 1.7E-05 43.4 -0.9 68 52-119 370-440 (975)
142 KOG2416|consensus 69.5 4.4 9.5E-05 37.0 2.9 57 54-114 444-503 (718)
143 PF00403 HMA: Heavy-metal-asso 62.4 19 0.00042 21.9 4.1 55 56-114 1-60 (62)
144 PF02714 DUF221: Domain of unk 61.4 12 0.00025 30.7 3.8 35 96-131 1-35 (325)
145 KOG4410|consensus 58.6 6.8 0.00015 32.9 1.9 47 55-103 331-377 (396)
146 PF15023 DUF4523: Protein of u 56.2 51 0.0011 25.0 6.0 68 50-123 83-155 (166)
147 PRK11901 hypothetical protein; 54.4 29 0.00063 29.4 5.0 57 52-112 243-303 (327)
148 PF07292 NID: Nmi/IFP 35 domai 51.7 11 0.00025 25.8 1.8 22 54-75 52-73 (88)
149 cd06404 PB1_aPKC PB1 domain is 50.7 77 0.0017 21.6 6.7 65 56-127 10-83 (83)
150 KOG1295|consensus 48.6 19 0.00041 31.1 3.1 57 55-111 8-70 (376)
151 PF14893 PNMA: PNMA 48.5 11 0.00024 31.9 1.7 48 55-102 19-71 (331)
152 KOG4483|consensus 47.1 19 0.0004 31.7 2.8 55 54-113 391-447 (528)
153 PRK14548 50S ribosomal protein 46.2 27 0.00059 23.7 3.0 48 63-112 29-80 (84)
154 cd06398 PB1_Joka2 The PB1 doma 46.0 59 0.0013 22.2 4.7 59 62-126 25-86 (91)
155 KOG4213|consensus 45.4 14 0.0003 29.0 1.6 62 55-119 112-176 (205)
156 PF15513 DUF4651: Domain of un 44.8 32 0.0007 22.1 3.0 16 69-84 9-24 (62)
157 PF08503 DapH_N: Tetrahydrodip 43.8 55 0.0012 22.2 4.2 31 96-126 43-73 (83)
158 PF07292 NID: Nmi/IFP 35 domai 42.2 34 0.00074 23.4 3.0 30 96-125 1-32 (88)
159 KOG2253|consensus 42.0 17 0.00036 33.6 1.8 65 55-126 41-107 (668)
160 COG3254 Uncharacterized conser 40.0 62 0.0014 23.0 4.1 45 68-112 26-70 (105)
161 KOG4008|consensus 39.2 13 0.00028 30.3 0.6 31 55-85 41-71 (261)
162 cd04908 ACT_Bt0572_1 N-termina 38.6 93 0.002 19.1 4.5 57 56-116 5-63 (66)
163 TIGR03636 L23_arch archaeal ri 38.1 42 0.00092 22.3 2.9 48 62-111 21-72 (77)
164 PRK10905 cell division protein 36.4 66 0.0014 27.3 4.4 56 53-112 246-305 (328)
165 KOG3424|consensus 35.7 32 0.00069 25.2 2.1 41 65-106 34-82 (132)
166 KOG4676|consensus 32.4 11 0.00024 32.9 -0.8 68 55-122 53-122 (479)
167 PF02685 Glucokinase: Glucokin 31.4 18 0.00039 30.3 0.3 31 55-88 70-100 (316)
168 KOG2295|consensus 31.1 10 0.00023 34.4 -1.2 58 55-112 232-295 (648)
169 cd04883 ACT_AcuB C-terminal AC 30.7 1.3E+02 0.0028 18.3 5.0 50 67-116 14-67 (72)
170 PRK01178 rps24e 30S ribosomal 30.5 84 0.0018 22.0 3.5 43 65-108 30-80 (99)
171 PF14026 DUF4242: Protein of u 30.0 1.6E+02 0.0035 19.2 7.7 59 56-114 2-68 (77)
172 cd06498 ACD_alphaB-crystallin_ 28.8 56 0.0012 21.7 2.4 27 61-87 57-83 (84)
173 TIGR02118 conserved hypothetic 28.6 72 0.0016 21.5 3.0 20 92-111 52-71 (100)
174 KOG1975|consensus 27.6 2.7E+02 0.0058 24.2 6.6 56 55-123 173-235 (389)
175 PF05336 DUF718: Domain of unk 27.4 83 0.0018 21.9 3.1 45 68-112 25-69 (106)
176 PF03439 Spt5-NGN: Early trans 26.9 69 0.0015 21.3 2.6 22 91-112 42-63 (84)
177 KOG2318|consensus 26.8 1.8E+02 0.004 26.8 5.8 65 55-119 175-295 (650)
178 COG0724 RNA-binding proteins ( 25.4 89 0.0019 23.2 3.3 58 54-111 225-285 (306)
179 cd06464 ACD_sHsps-like Alpha-c 25.2 57 0.0012 20.7 1.9 26 61-87 63-88 (88)
180 PF13046 DUF3906: Protein of u 25.2 75 0.0016 20.6 2.3 35 64-98 28-63 (64)
181 TIGR00755 ksgA dimethyladenosi 25.1 65 0.0014 25.5 2.5 29 56-84 96-124 (253)
182 cd06478 ACD_HspB4-5-6 Alpha-cr 24.9 62 0.0013 21.3 2.0 27 61-87 57-83 (83)
183 PF04026 SpoVG: SpoVG; InterP 24.1 1.3E+02 0.0028 20.3 3.5 23 80-102 3-27 (84)
184 CHL00128 psbW photosystem II p 24.1 1.3E+02 0.0028 21.6 3.6 36 73-108 5-43 (113)
185 cd06526 metazoan_ACD Alpha-cry 24.0 66 0.0014 20.9 2.0 26 61-86 57-82 (83)
186 TIGR03047 PS_II_psb28 photosys 23.3 1.4E+02 0.003 21.3 3.6 36 73-108 2-40 (109)
187 COG2608 CopZ Copper chaperone 22.8 2.1E+02 0.0046 18.1 5.8 57 55-115 4-65 (71)
188 COG0030 KsgA Dimethyladenosine 22.6 94 0.002 25.5 3.0 32 55-86 96-128 (259)
189 COG0769 MurE UDP-N-acetylmuram 22.5 2.7E+02 0.0059 24.7 6.1 61 64-127 304-367 (475)
190 PRK13259 regulatory protein Sp 22.4 1.3E+02 0.0029 20.9 3.3 23 80-102 3-27 (94)
191 PF01677 Herpes_UL7: Herpesvir 21.9 31 0.00068 27.5 0.1 56 66-129 38-93 (224)
192 PF05573 NosL: NosL; InterPro 21.6 1.2E+02 0.0026 22.3 3.2 25 90-114 111-135 (149)
193 cd05992 PB1 The PB1 domain is 21.5 1.9E+02 0.0042 18.1 3.9 58 64-125 19-79 (81)
194 cd06497 ACD_alphaA-crystallin_ 21.4 82 0.0018 20.9 2.1 27 61-87 60-86 (86)
195 PF03912 Psb28: Psb28 protein; 21.1 1.4E+02 0.0031 21.3 3.3 33 73-105 2-37 (108)
196 PRK11230 glycolate oxidase sub 21.1 3.6E+02 0.0078 23.9 6.6 58 55-112 190-253 (499)
197 PF11215 DUF3010: Protein of u 20.8 1.9E+02 0.0041 21.6 4.0 55 62-116 37-115 (138)
198 cd06476 ACD_HspB2_like Alpha c 20.7 72 0.0016 21.2 1.7 27 61-87 57-83 (83)
199 PRK01617 hypothetical protein; 20.7 1.2E+02 0.0027 22.7 3.1 35 67-101 62-97 (154)
200 PF01071 GARS_A: Phosphoribosy 20.1 96 0.0021 24.2 2.5 45 67-112 25-69 (194)
No 1
>KOG4211|consensus
Probab=99.82 E-value=2.7e-20 Score=159.30 Aligned_cols=98 Identities=40% Similarity=0.636 Sum_probs=87.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC-
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR- 132 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~- 132 (152)
.+.|++++|||+||++||.+||++|+|.++.|.+..|++.|+|||+|.++||+++||+||++.|++|+|+||.+...+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 3789999999999999999999999999988888889999999999999999999999999999999999999977653
Q ss_pred -----CC-----CCCCCCCCCCCCccCCC
Q psy3068 133 -----GG-----VGGSGFSRSELWAVHTS 151 (152)
Q Consensus 133 -----gg-----~~g~~r~R~~~w~~~~~ 151 (152)
.+ .-+--|.|++||+.+..
T Consensus 90 ~~~~~~g~~s~~~d~vVRLRGLPfscte~ 118 (510)
T KOG4211|consen 90 WVMRPGGPNSSANDGVVRLRGLPFSCTEE 118 (510)
T ss_pred ccccCCCCCCCCCCceEEecCCCccCcHH
Confidence 11 22456899999998754
No 2
>KOG0122|consensus
Probab=99.81 E-value=2.9e-19 Score=142.11 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCccEEEEcCCCCCCCHHHHHcccCCCCc-
Q psy3068 2 YDANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP- 80 (152)
Q Consensus 2 ~~~p~~~~~~~g~~g~gg~gG~y~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~v~v~nLp~~~te~dl~e~F~~~~~- 80 (152)
-|.|+..+.+.-..-.++..|.|+||.+++++....+ +++...+| ..+|+|.|||.+++|+||+++|..|+.
T Consensus 144 lde~~~~e~~~~~~ap~~~~g~yvpP~mR~ga~~~~g----~~~R~R~D---~~tvRvtNLsed~~E~dL~eLf~~fg~i 216 (270)
T KOG0122|consen 144 LDEPATAESPAESAAPGTKKGKYVPPSMRAGADRASG----SDMRERDD---EATVRVTNLSEDMREDDLEELFRPFGPI 216 (270)
T ss_pred ccCCcccccchhhcCcCCcCccccCccccCCcccccc----cccccCCc---cceeEEecCccccChhHHHHHhhccCcc
Confidence 3567766655544434677899999999887653333 11112222 368999999999999999999999974
Q ss_pred eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 81 VYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 81 ~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|.+|+ |.++|||||+|.+++||.+||.. ++.-+.+-.++|--+.++
T Consensus 217 ~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 217 TRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 599999998 99999999999999999999997 999999999988776654
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=8.2e-18 Score=125.58 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||+||+++|++|+ |.+|.|++|. ++++|||||+|+++++|++||+. +++.|.++.|+|..+..+
T Consensus 35 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 6899999999999999999999995 6699999987 89999999999999999999985 899999999999988655
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 115 ~ 115 (144)
T PLN03134 115 P 115 (144)
T ss_pred C
Confidence 4
No 4
>KOG4211|consensus
Probab=99.73 E-value=2.6e-18 Score=147.21 Aligned_cols=78 Identities=44% Similarity=0.712 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~--~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|+|++|||.|||+||.+||+.|.|+ .|.|+.++ ++++|+|||.|++.+.|++||++|+++|++|+|+||.++..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHH
Confidence 4799999999999999999999999776 46678888 99999999999999999999999999999999999999876
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 183 e 183 (510)
T KOG4211|consen 183 E 183 (510)
T ss_pred H
Confidence 5
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=7.1e-16 Score=129.72 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 53 ~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
...+|||+|||+++||++|+++|+.++ |++|+|+.|. ++++|||||+|.++++|++||+. ++..|.++.|+|..+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 348999999999999999999999995 6689999986 99999999999999999999975 9999999999998775
Q ss_pred C
Q psy3068 129 S 129 (152)
Q Consensus 129 ~ 129 (152)
+
T Consensus 186 p 186 (346)
T TIGR01659 186 P 186 (346)
T ss_pred c
Confidence 4
No 6
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=9.3e-16 Score=99.63 Aligned_cols=67 Identities=30% Similarity=0.386 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q psy3068 57 VHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIE 123 (152)
Q Consensus 57 v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~ 123 (152)
|+|+|||+++|++||++||+.++ |..|.+..++ ++++|+|||+|.++++|++||+. ++..++++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999996 5599999987 99999999999999999999998 55999999885
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.64 E-value=8.6e-16 Score=127.25 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=71.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++++++|+++|++|+ |.+|+|++|+ ++++|||||+|.+.++|.+||+. ++..|++|.|+|......
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 5799999999999999999999996 6699999997 99999999999999999999985 999999999999887655
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 350 ~ 350 (352)
T TIGR01661 350 A 350 (352)
T ss_pred C
Confidence 4
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1e-15 Score=98.28 Aligned_cols=67 Identities=30% Similarity=0.422 Sum_probs=61.9
Q ss_pred EEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEE
Q psy3068 57 VHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIE 123 (152)
Q Consensus 57 v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~ 123 (152)
|+|+|||.++|+++|+++|++++. ..+.|..+. ++++++|||+|.++++|++||+ .++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999965 488888876 9999999999999999999999 599999999885
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.63 E-value=1e-15 Score=126.84 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||+||++||+.|+ |..|+|++|+ ++++|||||+|.+.++|++||+. ++..|.++.|.|..+.+.
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 6899999999999999999999996 5599999987 89999999999999999999985 999999999999877654
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 84 ~ 84 (352)
T TIGR01661 84 S 84 (352)
T ss_pred c
Confidence 4
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=7.3e-15 Score=118.75 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++||+||++||+.|+ |.+|.|+.++ .++|||||+|.++++|+.||.+++..|.+|.|+|.++..
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 6899999999999999999999995 6799998886 357999999999999999999999999999999998863
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=2.3e-14 Score=120.62 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=67.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~ 127 (152)
..+|||+|||+++||+||+++|+.|+ |+.|.|+.|+ ++++|+|||+|+++++|++||+. ++..+.+ +.|.|..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 36799999999999999999999995 6689999886 99999999999999999999996 8877755 67888777
Q ss_pred cCC
Q psy3068 128 SSS 130 (152)
Q Consensus 128 ~~~ 130 (152)
...
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 543
No 12
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=5.7e-14 Score=112.33 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
++|+|+||++.+||+||++||+.|+ |..|+|+.|. +.+++|||+|.++++|+.||..++..|.++.|.|.+..
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 7999999999999999999999996 6699999884 55689999999999999999999999999999998864
No 13
>KOG0125|consensus
Probab=99.51 E-value=3.3e-14 Score=117.39 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+.|+|+||||...|.||+..|..|+ |++|.|+++..-+|||+||+|++.+||++|-++ |++.+.||+|||..++.+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 36999999999999999999999996 569999999966899999999999999999997 999999999999988664
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=7.1e-14 Score=119.88 Aligned_cols=76 Identities=25% Similarity=0.268 Sum_probs=70.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||++||+.++ |..|.|++|+ ++++|+|||+|.+.++|++||..++..|.++.|.|..+..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 37999999999999999999999996 5699999987 9999999999999999999999999999999999987543
No 15
>KOG0121|consensus
Probab=99.50 E-value=5.3e-14 Score=102.95 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..||+|+||+|.+||++|.|+|+.|+.+ +|.|-.|+ -.+.|||||+|-+.+||+.||+. ++..|+.|.|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 3799999999999999999999999755 78888887 78899999999999999999996 999999999999754
No 16
>KOG0149|consensus
Probab=99.47 E-value=6.1e-14 Score=111.26 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.++|||.||+|.++.++|+++|++| .|+.+.|+.|+ +|+||++||+|.+.+.|.+|++.-...|+||...+.++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3789999999999999999999999 58899999998 9999999999999999999999999999999888776643
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.46 E-value=2.1e-13 Score=120.21 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
+|||+|||+++||++|+++|+.++ |++|+|.+|. ++++|+|||+|.+.++|++||+. +...+.++.|+|..+.+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 699999999999999999999996 5699999987 89999999999999999999986 778899999999876543
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=5.7e-13 Score=84.09 Aligned_cols=69 Identities=30% Similarity=0.403 Sum_probs=61.7
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
+|+|+|||.+++++||+++|..++ +..+.+..+++.++|+|||+|.+.++|++|++. ++..+.++.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 489999999999999999999996 558888876677889999999999999999996 778889998876
No 19
>KOG4207|consensus
Probab=99.44 E-value=1.9e-13 Score=107.15 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.+|.|-||.|-+|.+||+..|+.++ |.+|+|+.|+ ..++|||||-|....||+.||+. |+..|++|.|.|..|.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 7899999999999999999999995 6799999998 99999999999999999999996 9999999999998874
No 20
>KOG0107|consensus
Probab=99.43 E-value=6e-13 Score=101.75 Aligned_cols=76 Identities=28% Similarity=0.324 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
+..|+|.||+.++|+.||...|..++++ .|.|... +-|||||+|+++.||+.|+.- |+..|.+..|.|-+++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4799999999999999999999999866 7888874 468999999999999999995 9999999999999988776
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 5
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.43 E-value=3.1e-13 Score=120.62 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
++|||+|||+++++++|+++|..|+ |.+|+|+.|+ ++++|||||+|.++++|++||+. |+..|.+|.|+|...
T Consensus 108 ~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 108 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 6899999999999999999999996 5699999997 99999999999999999999985 999999999999754
No 22
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.1e-12 Score=83.09 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=63.1
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELF 125 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~ 125 (152)
+|+|+|||..+++++|+++|+.++ +..+.+..++ ..++|+|||+|.+.++|+.|+++ ++..+.++.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999985 6689998887 78899999999999999999997 7777899998875
No 23
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.42 E-value=6.5e-13 Score=102.25 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|+++|+++|..++. .+|.|..++ ++++|+|||+|.++++|..||+. ++..+.++.|.|..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 389999999999999999999999975 499999996 99999999999999999999997 7799999999999864
No 24
>KOG0113|consensus
Probab=99.42 E-value=7.7e-13 Score=108.14 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.||||.-|+++++|++|+..|+.++ |.+|+|+.|. |+++|+|||+|+++.+++.|.+. ++..|++|.|.|...+.+
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 7999999999999999999999996 5599999997 99999999999999999999998 999999999999887665
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
-
T Consensus 182 T 182 (335)
T KOG0113|consen 182 T 182 (335)
T ss_pred c
Confidence 3
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.42 E-value=7.1e-13 Score=118.33 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=72.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++++++|+++|+.|+ |+.|+|.+|+ ++++|||||+|.+.++|.+||+. |+..|+|+.|+|..+.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 37999999999999999999999995 6699999987 88999999999999999999996 99999999999998876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
++
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 55
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=1e-12 Score=112.68 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 47999999999999999999999996 5689999887 79999999999999999999984 9999999999998864
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=9.7e-13 Score=116.04 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|+++|+++|+.|+ |+.|.|..|. ++++|||||+|.+.++|++||+. ++..++++.|.|..+.+.
T Consensus 286 ~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 286 VNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 6899999999999999999999995 6699999998 99999999999999999999985 999999999999988764
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.4e-12 Score=81.83 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=59.6
Q ss_pred EcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 59 MRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 59 v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
|+|||..++++||+++|++++ +..+.|..++ ++++|+|||+|.+.++|++|++. ++..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 679999999999999999997 6688888875 88999999999999999999986 778889998876
No 29
>KOG1365|consensus
Probab=99.38 E-value=7.9e-14 Score=117.29 Aligned_cols=78 Identities=45% Similarity=0.683 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC-----CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV-----VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~-----~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
+..|++++|||+||+.||.+||.+- +.+.|.++..+ |+.+|.|||.|..+++|+.||.||+..|+.|||+||.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4689999999999999999999742 35577777776 99999999999999999999999999999999999988
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
+..+
T Consensus 241 TaaE 244 (508)
T KOG1365|consen 241 TAAE 244 (508)
T ss_pred hHHH
Confidence 7654
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.38 E-value=1.5e-12 Score=112.92 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=68.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|+++|+++|+.|+ +..|.|+++. |+++|||||+|.+.++|+.||+. ++..|.++.|.|..+..
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 6899999999999999999999996 5588898886 99999999999999999999985 99999999999988753
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.37 E-value=2.4e-12 Score=114.52 Aligned_cols=71 Identities=25% Similarity=0.187 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC--C-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV--V-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~--~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||++|+++|+.| + |++|.++ ++||||+|+++++|++||+ +++..|.++.|+|..+.+.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 689999999999999999999999 4 6678754 5699999999999999998 4999999999999998775
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 308 ~ 308 (578)
T TIGR01648 308 D 308 (578)
T ss_pred C
Confidence 4
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=1.5e-12 Score=115.82 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=63.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEEEEe
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIR-HRYIELFL 126 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~-~R~I~V~~ 126 (152)
.++|||+|||++++|++|+++|+.++ |+.|+|++|. ++++|||||+|.++++|++||+. ++..|. ++.|.|..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 37999999999999999999999996 5699999998 99999999999999999999996 666663 66665543
No 33
>KOG4212|consensus
Probab=99.35 E-value=2.4e-12 Score=109.97 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..|||+||||++.|+||+++|... .|.-|.|.+|. |+++|+|.|+|+++|.+++|+++ +++.+.+|.|.|.....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 569999999999999999999976 46789999999 99999999999999999999997 99999999999987644
No 34
>KOG1365|consensus
Probab=99.35 E-value=4.1e-13 Score=113.00 Aligned_cols=78 Identities=35% Similarity=0.534 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC--ce--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV--PV--YVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~--~~--~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.||++++|||.+|.+||.+||.+|. +. .|+++.+. |++.|+|||+|.+.|+|..|+.+ +++.++.|+|+||+|+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 6999999999999999999999883 33 69999998 99999999999999999999998 7788889999999998
Q ss_pred CCCC
Q psy3068 129 SSPR 132 (152)
Q Consensus 129 ~~~~ 132 (152)
..+.
T Consensus 361 ~eel 364 (508)
T KOG1365|consen 361 VEEL 364 (508)
T ss_pred HHHH
Confidence 8763
No 35
>KOG0114|consensus
Probab=99.34 E-value=4.8e-12 Score=89.70 Aligned_cols=75 Identities=21% Similarity=0.417 Sum_probs=66.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
...|||+||||++|.+++.|+|..++.+ .|+|-..+ ..+|.|||.+++..||++|+.+ ++..+.+|++.|..-..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k-~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK-ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc-CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4789999999999999999999999754 78887765 4469999999999999999997 99999999999876543
No 36
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=4.6e-12 Score=109.72 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=66.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCH--HHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATH--EDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~--~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+||+|++|++||++.|.+|+ |.+|.|++..| +|||||+|.+. .++++||+. ++..+.||.|+|..+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 37899999999999999999999996 56999996557 89999999987 789999995 99999999999998864
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=8.5e-12 Score=108.76 Aligned_cols=72 Identities=28% Similarity=0.256 Sum_probs=63.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||+||+++|++|+ |.+|.|+. .+|+|||+|++.++|++||+. +...|.++.|.|..+...
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 7999999999999999999999997 45888875 368999999999999999984 778999999999887543
No 38
>KOG0131|consensus
Probab=99.29 E-value=2.2e-12 Score=99.17 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
+.+|||.||+..+|++-|.|+|-++++ ++|+|++|+ ...+|||||+|.++|||+-|++- +.-.|-+|.|+|..++
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 379999999999999999999999975 599999998 88999999999999999999995 8888999999999987
No 39
>KOG0127|consensus
Probab=99.28 E-value=6.3e-12 Score=109.63 Aligned_cols=77 Identities=29% Similarity=0.415 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh------CC-CccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK------DR-TNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~------~~-~~l~~R~I~V 124 (152)
.+|||+||||++||++|+++|+.|+.+ -+.|+.++ ++++|.|||.|.++.++..||+. .+ -.|.||.|.|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 799999999999999999999999755 66777776 99999999999999999999996 34 6789999999
Q ss_pred EeccCCC
Q psy3068 125 FLNSSSP 131 (152)
Q Consensus 125 ~~~~~~~ 131 (152)
.++-.++
T Consensus 373 ~~Av~Rk 379 (678)
T KOG0127|consen 373 TLAVTRK 379 (678)
T ss_pred eeccchH
Confidence 9886554
No 40
>KOG0108|consensus
Probab=99.24 E-value=1.8e-11 Score=105.58 Aligned_cols=77 Identities=21% Similarity=0.377 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+||||+++|++|.++|+..+ |..++++.|+ |+++||+|++|.+.++|+.|++. ++..+.+|.|+|..+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 6899999999999999999999996 5699999998 99999999999999999999997 889999999999887665
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 5
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=3.6e-11 Score=104.85 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE------EEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY------IEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~------I~V 124 (152)
.+|||+|||+++|+++|+++|++++ ++.|+|...+...+++|||+|.+.++|.+||.. |++.|.++. |+|
T Consensus 395 ~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv 474 (481)
T TIGR01649 395 ATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKV 474 (481)
T ss_pred cEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEE
Confidence 7999999999999999999999996 457777655544689999999999999999996 999999885 888
Q ss_pred EeccC
Q psy3068 125 FLNSS 129 (152)
Q Consensus 125 ~~~~~ 129 (152)
..+.+
T Consensus 475 ~fs~~ 479 (481)
T TIGR01649 475 SFSTS 479 (481)
T ss_pred EeccC
Confidence 87754
No 42
>KOG0127|consensus
Probab=99.22 E-value=2.7e-11 Score=105.75 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..|+|+||||.|.+.||+.+|+.|+ ++.|.|+... ++.+|||||.|....+|+.||+. ++..|++|.|-|.-+-..
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 6899999999999999999999996 6699999888 88889999999999999999997 999999999999765443
No 43
>KOG0126|consensus
Probab=99.19 E-value=5.9e-12 Score=97.03 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..|||.||||+.||.||.-.|++++ |++|.|++|+ |+++||||.-|+++.+.--|+.. ++..|.+|.|+|..+..
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 6899999999999999999999995 8899999998 99999999999999999999986 99999999999976643
No 44
>KOG0117|consensus
Probab=99.18 E-value=3.1e-11 Score=103.13 Aligned_cols=71 Identities=24% Similarity=0.234 Sum_probs=65.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..|||+||+.++||+.|+++|++++ +.+|..++| +|||+|.++++|.+||+. +++.|.+..|+|.++.+..
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 6899999999999999999999995 679997765 999999999999999996 9999999999999998764
No 45
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=2.6e-11 Score=105.22 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=58.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC------------Cce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCe
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV------------VPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR 120 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~------------~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R 120 (152)
..+|||+|||+++|+++|++||.++ .++ .|.+ .+.+|||||+|.+.++|..||+.++..|.++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~----~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~ 250 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI----NKEKNFAFLEFRTVEEATFAMALDSIIYSNV 250 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE----CCCCCEEEEEeCCHHHHhhhhcCCCeEeeCc
Confidence 3799999999999999999999864 111 2222 4668999999999999999999999999999
Q ss_pred EEEEEe
Q psy3068 121 YIELFL 126 (152)
Q Consensus 121 ~I~V~~ 126 (152)
.|.|..
T Consensus 251 ~l~v~r 256 (509)
T TIGR01642 251 FLKIRR 256 (509)
T ss_pred eeEecC
Confidence 999864
No 46
>KOG0105|consensus
Probab=99.16 E-value=1.1e-10 Score=90.42 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
.+|+|.|||-++.|.||+++|..++ |+.|.|...++ +-.||||+|+++.||+.||. +++..+++..++|-....
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 6899999999999999999999996 55777654443 34799999999999999999 599999999999976643
No 47
>KOG4307|consensus
Probab=99.16 E-value=4.9e-10 Score=100.18 Aligned_cols=77 Identities=34% Similarity=0.597 Sum_probs=68.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHcccCCCCc--eEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q psy3068 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP--VYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELF 125 (152)
Q Consensus 50 ~~~~~~~v~v~nLp~~~te~dl~e~F~~~~~--~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~ 125 (152)
..|+..+|.|+|+||+++-+||.+||.++.+ .+|.|.+++ |.++|+|.|.|+++++|.+|... +++.|.+|.|.|.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 3455569999999999999999999999864 489998887 99999999999999999999985 9999999999876
Q ss_pred e
Q psy3068 126 L 126 (152)
Q Consensus 126 ~ 126 (152)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 48
>KOG0130|consensus
Probab=99.15 E-value=9.1e-11 Score=86.82 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q psy3068 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELF 125 (152)
Q Consensus 50 ~~~~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~ 125 (152)
+..+ ..|||+++...+||+||.+.|.+++ |..|+|-.|+ |..||+|.|+|++.++|++||.. |+..|-+..|+|.
T Consensus 69 SVEG-wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEG-WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceee-EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3344 8999999999999999999999996 6699999998 99999999999999999999996 8888889999997
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
-|--..
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 664433
No 49
>KOG0533|consensus
Probab=99.11 E-value=2.2e-10 Score=92.26 Aligned_cols=77 Identities=29% Similarity=0.479 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
...|.|.|||+.++++||+|+|.++ .+.++.|.+++ |++.|.|-|.|...+||.+||++ ++-.|+++.|.+.....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3789999999999999999999999 67799999999 99999999999999999999997 889999998888765443
No 50
>KOG0117|consensus
Probab=99.10 E-value=4.4e-10 Score=96.21 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=64.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCcc-CCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNI-RHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l-~~R~I~V~~~ 127 (152)
.+-|||..||-++.|+||..||+.++ |-+++|.+|+ |.++|+|||+|.+.++|++||+. |.+.| .++.|.|..+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 37899999999999999999999996 5599999997 99999999999999999999996 55444 5677666554
No 51
>KOG0148|consensus
Probab=99.09 E-value=2.4e-10 Score=92.69 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..-|||.-|...++-++|++-|.+|+ |.+++|++|. +++||++||+|-+.+||+.||.. +++.|+.|.|+-.=+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999995 7799999997 99999999999999999999996 99999999999887776
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 52
>KOG0111|consensus
Probab=99.08 E-value=1.6e-10 Score=91.66 Aligned_cols=78 Identities=24% Similarity=0.248 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|.+|...+||.=|..-|-+| .|++|.|+.|- ++.+||+||+|.-.|||..||.. |...|-+|.|+|..+.+.
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 699999999999999999999999 58899999997 99999999999999999999996 999999999999999887
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
.-
T Consensus 91 ki 92 (298)
T KOG0111|consen 91 KI 92 (298)
T ss_pred cc
Confidence 63
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=4.4e-10 Score=73.67 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=48.3
Q ss_pred HHHHHcccC----CCC-ceEEE-EeccC----CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 68 EKDIVDFFS----PVV-PVYVD-INYKN----GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 68 e~dl~e~F~----~~~-~~~v~-i~~d~----g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
++||+++|+ .++ +.+|. |+.++ ++++|+|||+|.+.++|.+||+. ++..+.+|.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 688999998 775 55774 55544 78999999999999999999996 999999999875
No 54
>KOG4212|consensus
Probab=99.06 E-value=6.8e-10 Score=95.13 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~ 126 (152)
++|+|+|||+++||+-|++-|.+|+.+ -+.| ..+|+++| .|.|.++++|+.|+.. ++..|.+|.|.|..
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 689999999999999999999999654 5556 55689998 9999999999999996 99999999999975
No 55
>KOG4209|consensus
Probab=99.05 E-value=6.7e-10 Score=88.98 Aligned_cols=82 Identities=24% Similarity=0.213 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
..|+|+|+.+.+|.++|...|+.|+ +.+|.|+.|+ +.+||||||+|.+.+.++.||+.++..|.++.|+|......-
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~~ 181 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTNV 181 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeeec
Confidence 6899999999999999999999995 6689999998 789999999999999999999999999999999998876665
Q ss_pred CCCCC
Q psy3068 132 RGGVG 136 (152)
Q Consensus 132 ~gg~~ 136 (152)
++..+
T Consensus 182 pg~~~ 186 (231)
T KOG4209|consen 182 PGMGR 186 (231)
T ss_pred CCcCC
Confidence 44333
No 56
>KOG0148|consensus
Probab=99.04 E-value=9.9e-10 Score=89.19 Aligned_cols=77 Identities=25% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 50 ~~~~~~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
+.|.+++|+|.|++.-+||++|++.|++|++ .+|+|-++ +|+|||.|++.|.|..||.. |++.|.+..|+++=-
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 5667799999999999999999999999974 58888866 69999999999999999986 999999999998754
Q ss_pred cCC
Q psy3068 128 SSS 130 (152)
Q Consensus 128 ~~~ 130 (152)
...
T Consensus 236 Ke~ 238 (321)
T KOG0148|consen 236 KEG 238 (321)
T ss_pred ccC
Confidence 443
No 57
>KOG0145|consensus
Probab=99.03 E-value=5.9e-10 Score=90.31 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.-|.|.=||.+.|++||+.+|..+ .|..++|++|+ |++-|++||.|.+++||++||.- ++-.|+...|+|..++++
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 568899999999999999999999 57899999999 99999999999999999999996 999999999999999887
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 122 s~ 123 (360)
T KOG0145|consen 122 SD 123 (360)
T ss_pred hh
Confidence 64
No 58
>KOG0145|consensus
Probab=98.98 E-value=3.7e-09 Score=85.71 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=70.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
.+||||-||..++.|.-|..+|.+|+ ++.|+|++|. .++|||+||+..+-++|.-||.. ++..|++|.+.|...+.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 48999999999999999999999996 6699999997 99999999999999999999985 99999999999976543
No 59
>KOG4205|consensus
Probab=98.95 E-value=5.6e-10 Score=92.83 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||.+|+|++|++.|+++|.++ .+.++.|.+|+ ++++||+||+|++.+...++|....++|.+|.|++..+-+++
T Consensus 7 ~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 7 GKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSRE 86 (311)
T ss_pred cceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcc
Confidence 689999999999999999999999 57799999998 999999999999999999999999999999999999987776
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 87 ~ 87 (311)
T KOG4205|consen 87 D 87 (311)
T ss_pred c
Confidence 4
No 60
>KOG0144|consensus
Probab=98.94 E-value=5.9e-10 Score=95.16 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=69.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh--CCCccCCe--EEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK--DRTNIRHR--YIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R--~I~V~~~ 127 (152)
+++|||+-|+..+||.||+++|..|+ |.+|+|.+|+ +.++|+|||.|.++|.|..||+. ..+.|.|. .|.|..+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 47899999999999999999999996 5599999999 99999999999999999999995 44666665 6778877
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.+.++
T Consensus 204 Dtqkd 208 (510)
T KOG0144|consen 204 DTQKD 208 (510)
T ss_pred ccCCC
Confidence 77654
No 61
>KOG0123|consensus
Probab=98.93 E-value=2.5e-09 Score=90.92 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.|||.||+.+++..+|.++|+.+ .|+.|++..+. | ++|+ ||+|+++++|++||++ |+..+.+..|.|-+..+.+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 49999999999999999999999 57899999999 7 9999 9999999999999997 9999999999887665543
No 62
>KOG1995|consensus
Probab=98.92 E-value=1.8e-09 Score=90.19 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce---------EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV---------YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~---------~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
..+|||.+||.++++.+|.+||.+|+++ .|+|.+|+ +++||.|.|+|++...|+.||.. ++..+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 4689999999999999999999999654 38888887 99999999999999999999996 888888899
Q ss_pred EEEEeccCCC
Q psy3068 122 IELFLNSSSP 131 (152)
Q Consensus 122 I~V~~~~~~~ 131 (152)
|+|+++....
T Consensus 146 ikvs~a~~r~ 155 (351)
T KOG1995|consen 146 IKVSLAERRT 155 (351)
T ss_pred chhhhhhhcc
Confidence 9999987665
No 63
>KOG4205|consensus
Probab=98.91 E-value=1.3e-09 Score=90.72 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
..|||.+||.+++|++++++|.+++ |.++.|.+|+ .+++||+||+|.+++.+++++.+.-+.|.++.|+|..+.+.+
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchh
Confidence 5899999999999999999999997 5588888887 999999999999999999999999999999999999998776
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 178 ~ 178 (311)
T KOG4205|consen 178 V 178 (311)
T ss_pred h
Confidence 3
No 64
>KOG0116|consensus
Probab=98.85 E-value=8.3e-09 Score=88.86 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEecc-C-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYK-N-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d-~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++++.+|+++|..|+. ....|..- + ++...||||+|.+.++++.||+.+...|++|.+.|-....
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 46999999999999999999999964 45444332 2 5555899999999999999999999999999998876654
No 65
>KOG0147|consensus
Probab=98.85 E-value=3.9e-09 Score=92.15 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=65.8
Q ss_pred EEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 57 VHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 57 v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
|+|+||.+++||++|+..|++|+ |..|.+.+|. |+++||+||+|.+.++|++|+.+ |+-.|.||.|+|...
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 89999999999999999999995 6689999985 99999999999999999999876 889999999998654
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.84 E-value=1.5e-08 Score=63.17 Aligned_cols=54 Identities=26% Similarity=0.274 Sum_probs=46.5
Q ss_pred HHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 71 IVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 71 l~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
|+++|+.++ |.+|.+..+. +++|||+|.+.++|+.|++. ++..+.++.|+|..+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999996 5578887653 68999999999999999995 999999999999764
No 67
>KOG0144|consensus
Probab=98.81 E-value=8.1e-09 Score=88.31 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh--CCCccCC--eEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKN--GRPSGEADVYFATHEDAMQAMSK--DRTNIRH--RYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~--R~I~V~~~ 127 (152)
-++||.-+|-..||.||+++|++++. ..|.|++|+ +.++|+|||.|.++++|.+|+.. +...|-+ ..|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 68999999999999999999999965 599999999 99999999999999999999984 5555644 46888776
Q ss_pred cCC
Q psy3068 128 SSS 130 (152)
Q Consensus 128 ~~~ 130 (152)
...
T Consensus 115 d~E 117 (510)
T KOG0144|consen 115 DGE 117 (510)
T ss_pred chh
Confidence 543
No 68
>KOG0124|consensus
Probab=98.76 E-value=6.9e-09 Score=87.49 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~ 126 (152)
+.|||..++|...|+.|+.-|.+|+++ .|.+.-|+ ++.||||||+|+=+|.|.-||+. |+..|++|.|+|-.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 479999999999999999999999865 89999998 99999999999999999999996 99999999999864
No 69
>KOG0110|consensus
Probab=98.71 E-value=2.5e-08 Score=89.27 Aligned_cols=73 Identities=25% Similarity=0.303 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-C----CcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-G----RPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g----~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
+|||+||+|++|.++|..+|...+ |..|.|.+.+ . .+.||+||+|.+.++|+.||+. +++.|+++.|+|..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 499999999999999999999885 5688777655 3 3569999999999999999997 7899999999999887
No 70
>KOG0105|consensus
Probab=98.70 E-value=2.6e-07 Score=71.87 Aligned_cols=73 Identities=23% Similarity=0.304 Sum_probs=54.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC----eEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH----RYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~----R~I~V~~~ 127 (152)
++.|.|++||.+.+|+||++++...+ +.=..+.+| |.+.|+|...||++.||.+ +.+.+.. -+|.|+..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 58999999999999999999999764 333333343 6899999999999999997 3332222 36778776
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 190 ~~~~ 193 (241)
T KOG0105|consen 190 ENRD 193 (241)
T ss_pred CCCc
Confidence 5554
No 71
>KOG1548|consensus
Probab=98.69 E-value=4.1e-08 Score=82.00 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=70.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce---------EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV---------YVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYI 122 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~---------~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I 122 (152)
+..|+|+|||.++|-+++.++|+.|+++ +|.|..+. |+.||.|.|.|--+++++-|++. +...+.++.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 3569999999999999999999998654 38999998 99999999999999999999996 9999999999
Q ss_pred EEEeccCCC
Q psy3068 123 ELFLNSSSP 131 (152)
Q Consensus 123 ~V~~~~~~~ 131 (152)
+|..+.-.-
T Consensus 214 rVerAkfq~ 222 (382)
T KOG1548|consen 214 RVERAKFQM 222 (382)
T ss_pred EEehhhhhh
Confidence 999886654
No 72
>KOG4307|consensus
Probab=98.69 E-value=1.9e-08 Score=90.21 Aligned_cols=74 Identities=36% Similarity=0.421 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce--EEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~--~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
..|++.|||+.+.-.||+.||+.|.|- .|||+- -..|+|||.|.+-|||+-||.|++..|.+-.|+++++++.+
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIG---Ge~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSSksE 78 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIG---GEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSSKSE 78 (944)
T ss_pred eEEEecCCcccccchHHHHhhcccccCCCceEEec---ccccceEEEecccchhhhhhhhcccceecceEEEEeccHHH
Confidence 479999999999999999999999764 789884 45789999999999999999999999999999999998876
No 73
>KOG0123|consensus
Probab=98.63 E-value=1e-07 Score=81.14 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|+|+ .++||.+|.++|++.+ ++.|+|.+|-. +-|+|||.|.+++||++||+. +-..+.++.|+|..+.+.+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 368888 8999999999999996 56999999984 999999999999999999996 8899999999998876554
No 74
>KOG4208|consensus
Probab=98.58 E-value=1.7e-07 Score=73.43 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=64.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-Cce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~ 127 (152)
..++|..||+-+-+.+|..+|.++ +++ ++++.+++ |.+||||||+|++++.|+-|-+ +|...|.++.+++..-
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 589999999999999999999998 655 77787886 9999999999999999999988 4999999987777543
No 75
>KOG0109|consensus
Probab=98.58 E-value=5.1e-08 Score=80.04 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
..|||.|||.++++.+|+.+|++++ |+.+.|+++ ++||..++...|+.||. .++..|.+..|.|-.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999995 779999965 89999999999999999 5999999999999877554
No 76
>KOG0131|consensus
Probab=98.54 E-value=1.1e-07 Score=73.56 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=68.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEE--EEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYV--DINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v--~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..|||+||...+.|.-|.+.|+.|++.-. .|.+++ |.++||+||.|++.|.+.+||.. +++.+.+|.|.|..+-.
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 67999999999999999999999976533 677776 89999999999999999999996 99999999999998866
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 177 ~~ 178 (203)
T KOG0131|consen 177 KD 178 (203)
T ss_pred cC
Confidence 65
No 77
>KOG0109|consensus
Probab=98.42 E-value=3.9e-07 Score=74.89 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|.||.+.||.+||++.|..++++ ++.|++ +++||.|...++|..|++- |+..+++..+.|..+..+
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 789999999999999999999999754 888885 4999999999999999984 999999999999887654
No 78
>KOG4454|consensus
Probab=98.42 E-value=6.8e-08 Score=76.63 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=66.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
+.||+|.||...++|+-|.|+|-+-++| +|.|+.++ ++.| ||||.|.++-.+.-|++. |+-.+-++.|.|.+-+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4799999999999999999999999865 99999998 8888 999999999999999997 8888888887776543
No 79
>KOG0110|consensus
Probab=98.40 E-value=1.7e-07 Score=84.11 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=62.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
...|.|+||||.+|..+|+++|..|+ +..|+|++.. +..+|||||+|-++.+|..|+.. ..++|-||.+.+--+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 36899999999999999999999995 6699998874 77899999999999999999986 566666665555443
No 80
>KOG0415|consensus
Probab=98.38 E-value=5.6e-07 Score=75.81 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEe
Q psy3068 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126 (152)
Q Consensus 51 ~~~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~ 126 (152)
.|.+++|||+-|..-+|.+||.-.|+.|+ |+.+.|++|. |-+.-+|||+|++.++.++|.-| +.-.|+.|.|.|..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45568999999999999999999999996 5699999997 99999999999999999999986 99999999999976
Q ss_pred cc
Q psy3068 127 NS 128 (152)
Q Consensus 127 ~~ 128 (152)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 53
No 81
>KOG0132|consensus
Probab=98.37 E-value=7.2e-07 Score=80.95 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=62.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..||+|++||.+++|.||..+|+.|+ |.+|.++- ++|+|||...++.||++||.+ ....+..+.|+|.=+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 37999999999999999999999995 66888774 578999999999999999997 7788889989887653
No 82
>KOG0153|consensus
Probab=98.35 E-value=1.1e-06 Score=73.54 Aligned_cols=71 Identities=28% Similarity=0.240 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~~~~~ 129 (152)
.+|+|+||-..++|+||+++|.+++ +..|.+... ++.|||+|.+++.|+.|..+ +...|.++.|.|.=.++
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 7999999988999999999999996 446666543 46999999999999999998 88889999898875544
No 83
>KOG0146|consensus
Probab=98.32 E-value=6.1e-07 Score=73.26 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEE
Q psy3068 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELF 125 (152)
Q Consensus 50 ~~~~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~ 125 (152)
..|..+-|||-.||....+.||...|-+|+ |+..++..|+ +.+|-|+||.|.++.+|+.||.. |+-.|+=+.++|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 445458899999999999999999999995 7788888887 99999999999999999999995 9999999889998
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
..++++
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 887766
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.27 E-value=5.5e-06 Score=58.15 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=60.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC---CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccC----CeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIR----HRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~---~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~----~R~I~V 124 (152)
+||-|+|||-..|.++|.+.+... ...=+.|+.|- ..+.|+|||.|.++++|.+-.+. ++..+. .+..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988754 23347788885 88899999999999999988886 666664 345666
Q ss_pred EeccCC
Q psy3068 125 FLNSSS 130 (152)
Q Consensus 125 ~~~~~~ 130 (152)
..|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 666443
No 85
>KOG4206|consensus
Probab=98.25 E-value=3.6e-06 Score=66.72 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHc----ccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVD----FFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e----~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.||+|.||+..+..++|+. +|++|+ |++|...+. .+.+|-|||.|.+.+.|-.|+.. ++-.+-+.+++|..+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 5999999999999999988 999996 777775544 47789999999999999999996 8888889999998886
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
...
T Consensus 89 s~s 91 (221)
T KOG4206|consen 89 SDS 91 (221)
T ss_pred Ccc
Confidence 654
No 86
>KOG0124|consensus
Probab=98.13 E-value=4.7e-06 Score=70.65 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
.+.|||..+..+.+|+||+..|+.|+ |+.|.|.+++ +..|||+|++|.+......||.- |--.|++.+++|-.|-+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 47999999999999999999999995 7799999998 88999999999999999999985 77889999999998866
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
++
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 65
No 87
>KOG4661|consensus
Probab=98.12 E-value=1.9e-05 Score=70.18 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=67.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.-|.|++|+..+.-.||+.+|+.|+ |+.+.++.+. =-.+-++||++.+.++|.++|+. +++.|.+|.|.|-.+...
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 5699999999999999999999994 7788888875 22356999999999999999997 999999999999887665
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 486 p 486 (940)
T KOG4661|consen 486 P 486 (940)
T ss_pred c
Confidence 4
No 88
>KOG1457|consensus
Probab=98.11 E-value=7.2e-06 Score=65.52 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=56.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEecc-C--CCcceEEEEEeCCHHHHHHHHHh-CCCccCC---eEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYK-N--GRPSGEADVYFATHEDAMQAMSK-DRTNIRH---RYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d-~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~---R~I~V~~ 126 (152)
.||||.+||.++...||..+|+.| +.....|... + .-.+=+|||+|.++.+|..|++. ++..++- ..++|-.
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 799999999999999999999999 6776666543 3 23446999999999999999996 7655543 3444444
Q ss_pred c
Q psy3068 127 N 127 (152)
Q Consensus 127 ~ 127 (152)
+
T Consensus 115 A 115 (284)
T KOG1457|consen 115 A 115 (284)
T ss_pred h
Confidence 4
No 89
>KOG0146|consensus
Probab=98.10 E-value=3e-06 Score=69.24 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=64.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CC-CccCC--eEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DR-TNIRH--RYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~-~~l~~--R~I~V~~~~ 128 (152)
.+|||.-|...-+|+|++.+|..|+ +.++.+.+.. |.+||+|||.|.+..||..||.- |+ ..|-+ .-+.|..+.
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 6899999999999999999999996 5689999988 99999999999999999999995 44 44444 346666665
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+.+
T Consensus 100 Tdk 102 (371)
T KOG0146|consen 100 TDK 102 (371)
T ss_pred chH
Confidence 544
No 90
>KOG0226|consensus
Probab=98.08 E-value=2.1e-06 Score=69.48 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
++.||++-|.-+++.+-|-.-|..| .....++++|. ++++|+.||.|.+..|+..||+. ++..++.|.|.+..+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 4799999999999999999999998 56678888887 99999999999999999999996 9999999999876553
No 91
>KOG4210|consensus
Probab=98.04 E-value=5.2e-06 Score=68.49 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
...+|.+|+++++++||+++|..++ +..|+++.++ +.++|||||.|.+..+...||......+.++.+.|-...+.+
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCc
Confidence 3444999999999999999999884 7789998887 999999999999999999999877788899998888776665
No 92
>KOG0106|consensus
Probab=98.00 E-value=6.8e-06 Score=65.26 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=54.3
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.|||.+||+.+.+.||.+||..++ +.+|.+. .||+||+|.+..||..|+.. ++..|.+-.+.|-.+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 599999999999999999999885 4455532 58999999999999999986 7777766655555544
No 93
>KOG0106|consensus
Probab=97.98 E-value=9.9e-06 Score=64.32 Aligned_cols=69 Identities=32% Similarity=0.362 Sum_probs=59.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
.+.+.|.+|+-.+.++||.++|.+.+.+..++. ..++|||+|+++++|+.||.+ ++..+.++.|.+-..
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 479999999999999999999999976643333 357999999999999999997 899999999998433
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.96 E-value=2.6e-05 Score=53.45 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=45.0
Q ss_pred cEEEEcCCCCCCCHHHHH----cccCCCC--ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIV----DFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~----e~F~~~~--~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..|+|.|||.+.....|+ .++..|+ +..|. .+.|+|.|.+++.|++|+++ +++.+-++.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 469999999999988865 4555674 44554 47899999999999999997 888888888988776
No 95
>KOG0147|consensus
Probab=97.91 E-value=3.6e-06 Score=73.89 Aligned_cols=77 Identities=23% Similarity=0.191 Sum_probs=69.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+||+--|+-.+++-||.+||+.++ |.+|.|+.|+ ++++|.|||+|-+.+.+..||...++.+.+-+|.|.+....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 36888889999999999999999996 4589999998 99999999999999999999999999999999999876443
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.77 E-value=0.00012 Score=52.01 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---C---CCccCCeEEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---D---RTNIRHRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~---~~~l~~R~I~V~ 125 (152)
..|+|.|++..++.++|++.|++++.+. +|.+.+|. -.|||-|.++++|++||++ . .-.+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~-yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA-YVDFSRGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE-EEE--TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc-eEEecCCC--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5799999999999999999999987443 23333333 3799999999999999996 2 344566555444
No 97
>KOG1457|consensus
Probab=97.43 E-value=9e-05 Score=59.32 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=46.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
+.||||-||.-+|||++|+.+|+.+ +...++|....|.+ .|||+|++.+.|..||..
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~--vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP--VAFADFEEIEQATDAMNH 267 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcc--eEeecHHHHHHHHHHHHH
Confidence 5689999999999999999999987 55555554433554 799999999999999875
No 98
>KOG0129|consensus
Probab=97.40 E-value=0.00034 Score=61.39 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-----CCCccCCeEEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-----DRTNIRHRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-----~~~~l~~R~I~V~ 125 (152)
.||||++||--+|-++|..+|.++ +|+=|-|..|+ ..++|-+-|+|.+...--+||.. +...+.- .|+|.
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIk 449 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIK 449 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeeec
Confidence 799999999999999999999976 46688899995 99999999999999999999995 3344443 47776
Q ss_pred ecc
Q psy3068 126 LNS 128 (152)
Q Consensus 126 ~~~ 128 (152)
+--
T Consensus 450 PYv 452 (520)
T KOG0129|consen 450 PYV 452 (520)
T ss_pred cee
Confidence 543
No 99
>KOG0120|consensus
Probab=97.33 E-value=0.00014 Score=64.03 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=66.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
...|+|.+||...++.+++|+...|+.. ...+..|. |.+||+||.+|.++.....|+.- +++.+++..+.|..+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 4689999999999999999999999765 56677776 89999999999999999999995 99999999988877644
No 100
>KOG4660|consensus
Probab=97.23 E-value=0.00022 Score=62.91 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIE 123 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~ 123 (152)
.+|.|-|||-++++++|..+|+.++ |..|+.-. ...|.+||+|-|..+|++||+. ++.+|.++.|.
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~---~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP---NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc---ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 7999999999999999999999885 44544322 2358999999999999999996 88888888777
No 101
>KOG0128|consensus
Probab=97.17 E-value=2.6e-05 Score=71.56 Aligned_cols=75 Identities=23% Similarity=0.249 Sum_probs=58.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
.++||+||+..+.+.||.++|.... ++.|.|..+.++.+|.|||+|..++++.+||..+...+-+ .+.|+....+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K~~v~i~g~p 745 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-KISVAISGPP 745 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-hhhhheeCCC
Confidence 4789999999999999999999764 3445555566899999999999999999999974444444 3556655444
No 102
>KOG4206|consensus
Probab=97.16 E-value=0.0015 Score=51.99 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCcc-CCeEEEEEec
Q psy3068 52 PGHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNI-RHRYIELFLN 127 (152)
Q Consensus 52 ~~~~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l-~~R~I~V~~~ 127 (152)
|.+.++++.|||..++.+-+..+|.++ +..+|+++... .+.|||+|.+...|..|.+- .+-.| ....|.|..+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 345899999999999999999999999 67788877643 57999999999887777764 33222 2555666543
No 103
>KOG0151|consensus
Probab=97.14 E-value=0.00082 Score=61.15 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=58.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC-----CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN-----GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~-----g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
+-|+|.||+..++|+.|..-|..|+++ .|+|...+ .+.+-++||.|.++.||++||+. ++..+-.+.+++
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 569999999999999999999999865 67776543 56677899999999999999996 777777666655
No 104
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0015 Score=42.28 Aligned_cols=52 Identities=27% Similarity=0.469 Sum_probs=44.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC----CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV----VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~----~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
..|+|+|+. +.+.+||+.||..+ .+.+|.-+-|. .|-|.|.+.+.|.+||..
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHc
Confidence 479999985 58889999999988 67788877763 589999999999999963
No 105
>KOG4849|consensus
Probab=97.10 E-value=0.0003 Score=59.58 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=59.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc---eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP---VYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~---~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.+++|.||-|.+|.+||.+-+..+++ .++++..++ |++||||.|...+....++.|+. -.+.|.+..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 79999999999999999998877654 467776676 99999999999999999999986 4555555544455443
No 106
>KOG0128|consensus
Probab=97.04 E-value=0.00023 Score=65.50 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..|+|+|+||.+|.++++.++...+ +..+.++..+ |+++|.|+|.|.++.++.+++.+ +...+..+.++|..+.+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5799999999999999999999885 5577788888 99999999999999999999986 77777777777776444
No 107
>KOG1190|consensus
Probab=96.96 E-value=0.0024 Score=55.08 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=57.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCe-EEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHR-YIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R-~I~V~~~~ 128 (152)
..+|++.|+|.+++|+||+++|.+-+ .++...-+. +.+=.|.+.+++.|+|-.||-. +.+.++.. .++|..+.
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 37999999999999999999999774 455554333 2334899999999999999986 77888765 68887653
No 108
>KOG0129|consensus
Probab=96.95 E-value=0.0027 Score=55.83 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-----CCcce---EEEEEeCCHHHHHHHHHh
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-----GRPSG---EADVYFATHEDAMQAMSK 112 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-----g~~~G---~a~V~F~~~~dA~~Al~~ 112 (152)
...|||++||++++|+.|...|..|+.+.|.=+... -.++| ++|..|+++..+..-|..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 368999999999999999999999988777755221 45677 999999999988887764
No 109
>KOG1190|consensus
Probab=96.93 E-value=0.0059 Score=52.67 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=64.8
Q ss_pred ccEEEEcCC-CCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGL-PFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nL-p~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
+.+|.|.|| ++.+|.+-|.-+|.-++ |.+|.|.++++ =-|.|.+.+...|+-|++. +++.|-++.|+|..++-+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 468888876 56899999999999985 67999998863 3599999999999999997 999999999999998766
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 374 ~ 374 (492)
T KOG1190|consen 374 N 374 (492)
T ss_pred c
Confidence 5
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.77 E-value=0.0022 Score=39.98 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=39.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAM 110 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al 110 (152)
+.|-|.|.|.+..+ +|.++|.+|+ |+++.+.. .+-.+||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 47889999977774 4556888895 66877662 2458999999999999996
No 111
>KOG1456|consensus
Probab=96.73 E-value=0.0051 Score=52.61 Aligned_cols=65 Identities=26% Similarity=0.265 Sum_probs=50.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I 122 (152)
.+|+|++|-..++|.||.|-.+.++++-+...... +--|.|+|++.+.|+.++.. +...+.+..-
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchh
Confidence 79999999999999999999999987754443332 23699999999999999985 4445555543
No 112
>KOG1548|consensus
Probab=96.55 E-value=0.0059 Score=51.56 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=55.8
Q ss_pred ccEEEEcCCC----CCCCHH-------HHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 54 HHTVHMRGLP----FRVNEK-------DIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 54 ~~~v~v~nLp----~~~te~-------dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
..+|.|+||= +..+.+ ||.+=...|++++-.+++++ .+.|.+.|.|.+.++|..+|+. ++..+++|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-CCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 3689999862 344433 33344556788765556664 6789999999999999999996 999999999
Q ss_pred EEEEecc
Q psy3068 122 IELFLNS 128 (152)
Q Consensus 122 I~V~~~~ 128 (152)
|.-+...
T Consensus 344 l~A~i~D 350 (382)
T KOG1548|consen 344 LTASIWD 350 (382)
T ss_pred EEEEEeC
Confidence 9887653
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.009 Score=50.63 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=56.2
Q ss_pred cEEEEcCCCCCCCHHH----H--HcccCCCC-ceEEEEeccC---CCcceEE--EEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 55 HTVHMRGLPFRVNEKD----I--VDFFSPVV-PVYVDINYKN---GRPSGEA--DVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 55 ~~v~v~nLp~~~te~d----l--~e~F~~~~-~~~v~i~~d~---g~~~G~a--~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
.-|+|-+||..+..++ | .+||.+++ |.+|.|-+.. ..-.+-+ ||+|.+.|||.+||.. |+..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4688999999998888 2 37999995 6677765543 2222324 9999999999999997 999999998
Q ss_pred EEEEe
Q psy3068 122 IELFL 126 (152)
Q Consensus 122 I~V~~ 126 (152)
|+...
T Consensus 195 lkatY 199 (480)
T COG5175 195 LKATY 199 (480)
T ss_pred Eeeec
Confidence 88754
No 114
>KOG2314|consensus
Probab=96.28 E-value=0.0085 Score=53.55 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCCC--CHHH----HHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEE
Q psy3068 54 HHTVHMRGLPFRV--NEKD----IVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIR-HRYIE 123 (152)
Q Consensus 54 ~~~v~v~nLp~~~--te~d----l~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~-~R~I~ 123 (152)
..+|.|-|+|-=- .-+- |..+|+.++ ++.+.++.+. |..+|+.|++|++..+|+.|++. |++.|+ +....
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4689999999632 2222 456777785 6799999988 88999999999999999999997 666554 34333
Q ss_pred E
Q psy3068 124 L 124 (152)
Q Consensus 124 V 124 (152)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 3
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.25 E-value=0.013 Score=41.35 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEE-Eecc-------C-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEE-E
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVD-INYK-------N-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI-E 123 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~-i~~d-------~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I-~ 123 (152)
..|.|=|.|.. ....|.++|+.|+ |++.. +..+ + -.......|.|+++.+|++||++|++.+.+..| -
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvG 85 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVG 85 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEE
Confidence 57888899988 4566888899996 44442 1111 1 123458999999999999999999999988654 4
Q ss_pred EEec
Q psy3068 124 LFLN 127 (152)
Q Consensus 124 V~~~ 127 (152)
|.++
T Consensus 86 V~~~ 89 (100)
T PF05172_consen 86 VKPC 89 (100)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 5555
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.12 E-value=0.028 Score=38.49 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=43.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
+++.+|+ +|..=...||.++|++|+.+.|.-+-| -.|||.+.+++.|+.|+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHH
Confidence 3788898 999999999999999999999887776 3799999999999999885
No 117
>KOG2591|consensus
Probab=95.43 E-value=0.024 Score=50.65 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCC--C-CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSP--V-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIE 123 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~--~-~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~ 123 (152)
+.|+||-||.++-+++|+.+|+. | .++.+.+..+. -=||+|++..||++|.+. ..+.+.++.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 67899999999999999999996 3 56677776654 259999999999999884 44555665543
No 118
>KOG1456|consensus
Probab=95.40 E-value=0.56 Score=40.49 Aligned_cols=73 Identities=11% Similarity=0.117 Sum_probs=58.7
Q ss_pred cEEEEcCCCCCCCH-HHHHcccCCC-CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNE-KDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te-~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.++.|-+|...... +-|..+|..+ +|.+|.+.+.+ .|.|.|+..+...+++||.. ++..|-+..|.|-.+.+.
T Consensus 288 ~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 288 CVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred cEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 78999999886554 4477888888 47799988753 57899999999999999997 777777777888776543
No 119
>KOG4676|consensus
Probab=95.17 E-value=0.022 Score=48.98 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEecc--C---CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYK--N---GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d--~---g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
.+|.|.||..++|.++++.+|..|+ |..+.|+-. + --..-.|||.|.+...+..|-....+.+=++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 4899999999999999999999985 557776542 2 34457899999999999988877666666676666654
No 120
>KOG0115|consensus
Probab=95.15 E-value=0.017 Score=47.05 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh--CC---CccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN-GRPSGEADVYFATHEDAMQAMSK--DR---TNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~--~~---~~l~~R~I~V~~~ 127 (152)
..|+|.||+.-++.+.+..-|+.|+++ +..++.|. ++.++..+|.|...-.|.+|+.. .+ -...++.+-|-++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 579999999999999999999999766 44445555 99999999999999999999986 22 4445666666666
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 112 eq~~ 115 (275)
T KOG0115|consen 112 EQPD 115 (275)
T ss_pred hccC
Confidence 5443
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.06 E-value=0.077 Score=39.86 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCccEEEEcCCC----CC-CCHH----HHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeE
Q psy3068 52 PGHHTVHMRGLP----FR-VNEK----DIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRY 121 (152)
Q Consensus 52 ~~~~~v~v~nLp----~~-~te~----dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~ 121 (152)
|...||.|+=+. .+ .-.+ +|.+.|.+++ ++=|++.- +.-.|+|.+-+.|-+||++++..++++.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEE
Confidence 334677777444 21 2222 4556666775 33444432 3689999999999999999999999999
Q ss_pred EEEEeccCC
Q psy3068 122 IELFLNSSS 130 (152)
Q Consensus 122 I~V~~~~~~ 130 (152)
|.|.+.++.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999987653
No 122
>KOG1855|consensus
Probab=94.73 E-value=0.028 Score=48.80 Aligned_cols=59 Identities=22% Similarity=0.188 Sum_probs=50.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEecc---C----CCc--------ceEEEEEeCCHHHHHHHHHhC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYK---N----GRP--------SGEADVYFATHEDAMQAMSKD 113 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d---~----g~~--------~G~a~V~F~~~~dA~~Al~~~ 113 (152)
.+|-+.|||.+-.-+.|.++|..|+ |..|+|+.. + +.+ +=.|+|+|+..+.|.+|.++.
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 8999999999999999999999996 558888776 2 322 457999999999999999874
No 123
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=94.37 E-value=0.023 Score=40.99 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=37.8
Q ss_pred cEEEEcCCCCCC---------CHHHHHcccCCCCceEEEEeccCCCcceEEEEEeC-CHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRV---------NEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFA-THEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~---------te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~-~~~dA~~Al~~ 112 (152)
.++.|-|+|... +.++|++.|+.|.+.+|+.+.++.-.+|+|+|.|. +-.-...|+..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 367788886543 56789999999999999988887556799999999 66667778775
No 124
>KOG0120|consensus
Probab=94.26 E-value=0.14 Score=45.44 Aligned_cols=50 Identities=22% Similarity=0.186 Sum_probs=40.7
Q ss_pred ceEEEEecc-C----CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 80 PVYVDINYK-N----GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 80 ~~~v~i~~d-~----g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
+..|.|+.+ . ....|-.||+|++.++++.|++. .+..+.+|+|.......
T Consensus 436 v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred eeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 447788776 2 56678999999999999999995 99999999987765543
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.14 E-value=0.28 Score=37.73 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=39.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCC-CCce----EEE--EeccC-C-CcceEEEEEeCCHHHHHHHHHh-CC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSP-VVPV----YVD--INYKN-G-RPSGEADVYFATHEDAMQAMSK-DR 114 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~-~~~~----~v~--i~~d~-g-~~~G~a~V~F~~~~dA~~Al~~-~~ 114 (152)
..|-||+||.+.||+++.+.+.+ +... -+. ..... . ..---|||.|.+.+++..-+.. ++
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 68999999999999999997776 4322 222 11111 2 2236799999999998888776 55
No 126
>KOG3152|consensus
Probab=92.86 E-value=0.052 Score=44.30 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC-C---------Ccc----eEEEEEeCCHHHHHHHHHh-CCCccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN-G---------RPS----GEADVYFATHEDAMQAMSK-DRTNIR 118 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~-g---------~~~----G~a~V~F~~~~dA~~Al~~-~~~~l~ 118 (152)
.+||+++||......-|+++|+.++.+ +|+|.... - .++ -++.|+|.+...|++.... |+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 589999999999999999999999755 99986643 1 222 3577999999999887664 888888
Q ss_pred CeE
Q psy3068 119 HRY 121 (152)
Q Consensus 119 ~R~ 121 (152)
++.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 874
No 127
>KOG2202|consensus
Probab=92.66 E-value=0.04 Score=44.81 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=38.0
Q ss_pred ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 80 PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 80 ~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
+..+.|..+- -...|-+||.|..+++|++|++. ++..+.++.|..-.+
T Consensus 96 iee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 96 IEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred hhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 4555555554 56779999999999999999996 889999998766544
No 128
>KOG1996|consensus
Probab=90.36 E-value=0.58 Score=39.21 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHHcccCCCC-ceEEEEeccCCCcc---eEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 68 EKDIVDFFSPVV-PVYVDINYKNGRPS---GEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 68 e~dl~e~F~~~~-~~~v~i~~d~g~~~---G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
|+++++-+..|+ +.+|.|...++.+- =--||+|+..++|-+|+-. |+.++++|.|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 445666666775 55777666552222 2368999999999999885 999999998764
No 129
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.63 E-value=1.6 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=40.1
Q ss_pred CCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q psy3068 65 RVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYI 122 (152)
Q Consensus 65 ~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I 122 (152)
.++-+||+.-+..+...+|.... +|+ ||.|.+..+|+++... ++..+-...|
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCcceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 56788999999999888877443 454 8999999999999986 6665554433
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.20 E-value=4.3 Score=28.93 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=49.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH 119 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~ 119 (152)
..+.+-..|+-++-++|..|...+ .+.-++|++|...++=.+.+.|.+.++|++-.+. |++.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 566777788888888888777766 3557888888744556899999999999999886 7755543
No 131
>KOG4210|consensus
Probab=87.14 E-value=0.36 Score=39.96 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=54.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEec--cCCCcceEEEEEeCCHHHHHHHHHhCCC-ccCCeEEEE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINY--KNGRPSGEADVYFATHEDAMQAMSKDRT-NIRHRYIEL 124 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~--d~g~~~G~a~V~F~~~~dA~~Al~~~~~-~l~~R~I~V 124 (152)
..+++++++.+++.+.++..++...+ .+.+.+.. +...++|+++|.|+..+.+..||..... .+..+.++.
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 36899999999999999998888764 33444433 3389999999999999999999998664 555554443
No 132
>KOG4285|consensus
Probab=86.80 E-value=1 Score=37.81 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=48.2
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCe-EEEEEeccCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR-YIELFLNSSS 130 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R-~I~V~~~~~~ 130 (152)
=|-|=++|...+. =|..+|+.|+ |++.... +.--+-+|.|.++-+|++||.++++.|++- .|-|.+|..+
T Consensus 199 WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccchh-HHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 3445555554442 2445677774 5554433 223489999999999999999999999876 5778887554
No 133
>KOG0112|consensus
Probab=85.99 E-value=1.1 Score=42.26 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=58.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~~~~ 130 (152)
..+++.+|+-.+...-|...|..|+++++ |.+++|.+ +|||.+++...|+.|+.. -+..|++ +.|+|.++...
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~-Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRI-IDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCccee-eecccCCc--ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 67999999999999999999999998875 55565666 999999999999999986 5556654 44677666443
No 134
>KOG2135|consensus
Probab=85.91 E-value=0.32 Score=42.85 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=54.7
Q ss_pred EEEEcCCCCCC-CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 56 TVHMRGLPFRV-NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 56 ~v~v~nLp~~~-te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.|.+.-.|+.. |..+|..+|.+++ |+.|.|... ---|.|+|.+..+|-+|..-+...|.+|.|+||--..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 45555555543 4567889999995 667776654 2359999999999999998999999999999997655
No 135
>KOG2068|consensus
Probab=85.23 E-value=0.47 Score=39.98 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=52.6
Q ss_pred cEEEEcCCCCCCCHHHHH---cccCCCC-ceEEEEeccC-----CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIV---DFFSPVV-PVYVDINYKN-----GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~---e~F~~~~-~~~v~i~~d~-----g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
.-++|-+|+.+...+++. ++|.+++ +.+|.+..+. --..--+||+|...+||..||.. ++..+.++.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 356777888776655543 6888884 6677776643 11112389999999999999996 888888887665
Q ss_pred EeccC
Q psy3068 125 FLNSS 129 (152)
Q Consensus 125 ~~~~~ 129 (152)
....+
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 54433
No 136
>KOG2193|consensus
Probab=85.11 E-value=1.1 Score=39.36 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=52.5
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCCc--eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEec
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFLN 127 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~~--~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~~~ 127 (152)
.+++.||...++.+||...|.+-.+ ..-.|+ ..|+|||.+.+..-|.+|++. .+..+.+..++|-.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 5889999999999999999997632 222222 258999999999999999996 446677777777654
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.62 E-value=5.6 Score=25.86 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHcccCCC-C-----ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 62 LPFRVNEKDIVDFFSPV-V-----PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 62 Lp~~~te~dl~e~F~~~-~-----~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
--..++..+|..++... + +-+|.|..+ |+||+-... .|+.+|+. ++..+.++.|.|.++
T Consensus 9 r~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 9 RKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cccCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34467888888888754 3 346776643 788887654 67777776 888999999988764
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.49 E-value=4.3 Score=31.54 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=40.1
Q ss_pred CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEEeccCCC
Q psy3068 67 NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-D--RTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 67 te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~--~~~l~~R~I~V~~~~~~~ 131 (152)
..+.|+++|..+. ++.+...+. -+=..|.|.+.++|.+|... + +..+.+..++|+.+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 3477899999885 455554432 33489999999999999997 5 788889889998875443
No 139
>KOG0804|consensus
Probab=79.04 E-value=6.9 Score=34.56 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=54.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH 119 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~ 119 (152)
+..|.|=.+|-..|.-||..|...+ .|..|+|++|.--.+=.+.|.|.+.++|..-.+. |+..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 4789999999999999999999977 3679999998734445799999999999999986 7765544
No 140
>KOG4660|consensus
Probab=75.34 E-value=4 Score=36.66 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-----------------------------eEEEEeccC--CCcceEEEEEeCCH
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-----------------------------VYVDINYKN--GRPSGEADVYFATH 103 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-----------------------------~~v~i~~d~--g~~~G~a~V~F~~~ 103 (152)
.++-|+|||..-+..||..+....++ .=++|+.|- -...|+|||.|.++
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp 441 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSP 441 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCH
Confidence 46667777777777777666653210 015566664 56779999999999
Q ss_pred HHHHHHHHh-CCCcc
Q psy3068 104 EDAMQAMSK-DRTNI 117 (152)
Q Consensus 104 ~dA~~Al~~-~~~~l 117 (152)
+++..+.+. +++.+
T Consensus 442 ~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 442 EAIIRFYKAFNGKKW 456 (549)
T ss_pred HHHHHHHHHHcCCch
Confidence 999999985 66544
No 141
>KOG0112|consensus
Probab=73.79 E-value=0.77 Score=43.36 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=52.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCC
Q psy3068 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRH 119 (152)
Q Consensus 52 ~~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~ 119 (152)
-...+||+.||+..+++.+|+--|..++ +.+|.|-..+ +.-.-+|||.|.+.+.+-+|... ....|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 3447999999999999999999999996 4588887776 66566899999988777766653 3333333
No 142
>KOG2416|consensus
Probab=69.49 E-value=4.4 Score=37.01 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=43.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccC-CCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFS-PVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~-~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~ 114 (152)
.++|+|+||=--.|.-.|++++. .+++| ... +| +.|--|||.|.+.++|.+-+.. |+
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mD--kIKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MD--KIKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHH--HH--HhhcceeEecccHHHHHHHHHHHhc
Confidence 38999999999999999999998 45433 432 22 4455799999999999877663 44
No 143
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=62.40 E-value=19 Score=21.86 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=41.1
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeCCH----HHHHHHHHhCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATH----EDAMQAMSKDR 114 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~~~----~dA~~Al~~~~ 114 (152)
|+.|.||.=.--...|++-+..+ ++..+.+... ++.+.|.|... +++.++|++-+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~----~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE----TKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC----CCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46777777777778888888887 7777777654 46789999833 78888888754
No 144
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.41 E-value=12 Score=30.70 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=24.1
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 96 a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
|||+|+++.+|+.|++.-..... +.+.|..+-.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCCCcc
Confidence 79999999999999996322222 334666664444
No 145
>KOG4410|consensus
Probab=58.57 E-value=6.8 Score=32.89 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=33.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCH
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATH 103 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~ 103 (152)
.-|+|.|||-++.-.||+.-+...+-+-+.|.-. -+.|-||..|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk--g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK--GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee--cCCcceeEecCCc
Confidence 4699999999999999998777654333333221 3356799999764
No 146
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=56.21 E-value=51 Score=25.02 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCCCccEEEEcCCCCCCCH-HHHH---cccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEE
Q psy3068 50 SGPGHHTVHMRGLPFRVNE-KDIV---DFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIE 123 (152)
Q Consensus 50 ~~~~~~~v~v~nLp~~~te-~dl~---e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~ 123 (152)
+.|- .+|-|+=|.-+... +|++ ..++-|+++ .|.+. |+ -.|.|.|.+-..|=.|+..-....-+..+.
T Consensus 83 epPM-sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---Gr--qsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPM-STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GR--QSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCc-eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CC--ceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3443 68888866655543 3344 445556655 55533 33 479999999999999998644444444333
No 147
>PRK11901 hypothetical protein; Reviewed
Probab=54.36 E-value=29 Score=29.43 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC--CCcceEEEE--EeCCHHHHHHHHHh
Q psy3068 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADV--YFATHEDAMQAMSK 112 (152)
Q Consensus 52 ~~~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~--g~~~G~a~V--~F~~~~dA~~Al~~ 112 (152)
+..++|.|-.++ .+++|.+|.....+..++++... |+.- |..| .|.+.++|+.||+.
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~s 303 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQNLSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIAT 303 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcCcCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHh
Confidence 345899998864 48889999887766666666544 5542 3333 68899999999986
No 148
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.71 E-value=11 Score=25.81 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.3
Q ss_pred ccEEEEcCCCCCCCHHHHHccc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFF 75 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F 75 (152)
..+|.|+|||....|++|+|..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 3799999999999999999844
No 149
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=50.75 E-value=77 Score=21.55 Aligned_cols=65 Identities=8% Similarity=0.169 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC----CceEEEE-eccC-CCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEe
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV----VPVYVDI-NYKN-GRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFL 126 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~----~~~~v~i-~~d~-g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~ 126 (152)
-|+|..++-.++-++|.+-..++ .-..+.| ..|. |-+ |+|.+.++++.|+.. ++. ..-.|.||+
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp-----~tiSS~~EL~EA~rl~~~n~~--~~l~ihvfp 82 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDP-----CTISSQMELEEAFRLYELNKD--SELNIHVFP 82 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCc-----eeecCHHHHHHHHHHHHhcCc--ccEEEEecC
Confidence 36777777788877765544432 2123333 2344 665 889999999999986 333 266788886
Q ss_pred c
Q psy3068 127 N 127 (152)
Q Consensus 127 ~ 127 (152)
+
T Consensus 83 ~ 83 (83)
T cd06404 83 G 83 (83)
T ss_pred C
Confidence 3
No 150
>KOG1295|consensus
Probab=48.60 E-value=19 Score=31.07 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=40.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccC----CCcceEEEEEeCCHHHHHHHHH
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKN----GRPSGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~----g~~~G~a~V~F~~~~dA~~Al~ 111 (152)
..|.|++||-..|+++|.+-..+| .+.-..+.... ..-.+.|||.|..+++...-..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 578899999999999999988876 23333343222 2335899999999999554443
No 151
>PF14893 PNMA: PNMA
Probab=48.52 E-value=11 Score=31.90 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=30.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCC-CCce-EEEEecc---CCCcceEEEEEeCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSP-VVPV-YVDINYK---NGRPSGEADVYFAT 102 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~-~~~~-~v~i~~d---~g~~~G~a~V~F~~ 102 (152)
..|.|.+||.+|+++||++-+.. +.+. +.++.-. +....--|+|+|..
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 67999999999999999998774 3332 2222211 12223357777764
No 152
>KOG4483|consensus
Probab=47.13 E-value=19 Score=31.68 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce--EEEEeccCCCcceEEEEEeCCHHHHHHHHHhC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~--~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~ 113 (152)
.++|-|-++|....-+||...|..|.-. +|.-+-|. -|+..|.+...|..||...
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhcc
Confidence 3799999999999999999999988544 44433331 4899999999999999863
No 153
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.25 E-value=27 Score=23.67 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCCCHHHHHcccCCC---CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh
Q psy3068 63 PFRVNEKDIVDFFSPV---VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 63 p~~~te~dl~e~F~~~---~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
+-+++..+|++.++.+ .+.+|....-+ +.. =|||.|..-.+|.....+
T Consensus 29 ~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 29 DRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHHh
Confidence 4588999999887764 56677766655 433 499999988888776554
No 154
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=46.03 E-value=59 Score=22.24 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHcccCCCCc-eEEEEec-cC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEe
Q psy3068 62 LPFRVNEKDIVDFFSPVVP-VYVDINY-KN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL 126 (152)
Q Consensus 62 Lp~~~te~dl~e~F~~~~~-~~v~i~~-d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~ 126 (152)
+.+..=.+.|.+.|. +.. ..+.|.+ |. | -+|.+.+.+|.+.||+..........|+|..
T Consensus 25 ~~~~~L~~kI~~~f~-l~~~~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 25 LNMDGLREKVEELFS-LSPDADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred CCHHHHHHHHHHHhC-CCCCCcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 444444555666663 322 4566644 33 4 5899999999999999865555556666553
No 155
>KOG4213|consensus
Probab=45.36 E-value=14 Score=29.02 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCCccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSKDRTNIRH 119 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~ 119 (152)
.+|+.. |.+..-++|.+|-+ =.+..|.+.... ...+|.-||+|.+.+.|.+.++.+......
T Consensus 112 r~v~~K--~td~ql~~l~qw~~-~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e 176 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS-GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAE 176 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc-ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccc
Confidence 345555 44555555666655 124455554432 378899999999999999988875544443
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.84 E-value=32 Score=22.13 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.5
Q ss_pred HHHHcccCCCCceEEE
Q psy3068 69 KDIVDFFSPVVPVYVD 84 (152)
Q Consensus 69 ~dl~e~F~~~~~~~v~ 84 (152)
++|++||++++.+.|.
T Consensus 9 ~~iR~~fs~lG~I~vL 24 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVL 24 (62)
T ss_pred HHHHHHHHhcCcEEEE
Confidence 6899999999766543
No 157
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=43.79 E-value=55 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeEEEEEe
Q psy3068 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFL 126 (152)
Q Consensus 96 a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~ 126 (152)
..|.|-+-++.+..|+.+...|.+-.|+...
T Consensus 43 ~~vvfGd~~~i~~~Le~~~~~I~~y~iE~dr 73 (83)
T PF08503_consen 43 FGVVFGDWDEIKPFLEANKDKIEDYRIENDR 73 (83)
T ss_dssp EEEEEEEHHHHHHHHHHTTTTEEEEEEEE-G
T ss_pred cEEEEecHHHHHHHHHhchhhCcEEEEEecC
Confidence 4588999999999999999999988887643
No 158
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.23 E-value=34 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=22.0
Q ss_pred EEEEeCCHHHHHHHHHh--CCCccCCeEEEEE
Q psy3068 96 ADVYFATHEDAMQAMSK--DRTNIRHRYIELF 125 (152)
Q Consensus 96 a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~ 125 (152)
|.|+|.++.-|++-|++ +.-.+++..+.|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 68999999999999997 3344556555443
No 159
>KOG2253|consensus
Probab=41.98 E-value=17 Score=33.55 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=49.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~ 126 (152)
.+|||+||.+.+..+=++.....|+.+ ...++. |+|.+|..+.-+..|+.. ....+++..+.+..
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 799999999999988888888888765 333221 899999999999999987 55566665544433
No 160
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=40.00 E-value=62 Score=22.98 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=34.3
Q ss_pred HHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 68 EKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 68 e~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
+.+|.++.+.++|.+-.|..|.-...-|+|+++.+.+..-++|..
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a~ 70 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMAE 70 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHhC
Confidence 457788888889987777777645567999999977776666654
No 161
>KOG4008|consensus
Probab=39.20 E-value=13 Score=30.32 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI 85 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i 85 (152)
.++|+-|+|-.+|++-|.++.++|+++...+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 6899999999999999999999887654333
No 162
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=38.58 E-value=93 Score=19.06 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=36.3
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC--CceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCc
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~--~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~ 116 (152)
+|.|.+-|- .-.+|-+.|.+. ++..+.+..... ++...+.+.+.+.|.++|+..+..
T Consensus 5 ~v~v~d~pG--~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 5 SVFLENKPG--RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred EEEEcCCCC--hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHHCCCE
Confidence 444444443 334677888754 566776533323 477777888888999999877643
No 163
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.11 E-value=42 Score=22.33 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHcccCCC---CceEEEEeccC-CCcceEEEEEeCCHHHHHHHHH
Q psy3068 62 LPFRVNEKDIVDFFSPV---VPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 62 Lp~~~te~dl~e~F~~~---~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~ 111 (152)
.+-+++..+|++.++.+ .+..|....-+ +.- =|||.+..-++|...-.
T Consensus 21 V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIAS 72 (77)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 35689999999877764 56677765554 333 49999987766665443
No 164
>PRK10905 cell division protein DamX; Validated
Probab=36.43 E-value=66 Score=27.31 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=38.0
Q ss_pred CccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC--CCcceEEEE--EeCCHHHHHHHHHh
Q psy3068 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADV--YFATHEDAMQAMSK 112 (152)
Q Consensus 53 ~~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~--g~~~G~a~V--~F~~~~dA~~Al~~ 112 (152)
..++|.|.-+.. ++.|++|-..+++....+.... |+.. |-.+ .|.+.++|++||++
T Consensus 246 ~~YTLQL~A~Ss---~~~l~~fakKlgL~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~Aiak 305 (328)
T PRK10905 246 SHYTLQLSSSSN---YDNLNGWAKKENLKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVST 305 (328)
T ss_pred CceEEEEEecCC---HHHHHHHHHHcCCCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHH
Confidence 358999998664 4678888887766544444332 5432 2222 68899999999997
No 165
>KOG3424|consensus
Probab=35.72 E-value=32 Score=25.17 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCHHHHHcccCCC-Cce-EEEEec---cC---CCcceEEEEEeCCHHHH
Q psy3068 65 RVNEKDIVDFFSPV-VPV-YVDINY---KN---GRPSGEADVYFATHEDA 106 (152)
Q Consensus 65 ~~te~dl~e~F~~~-~~~-~v~i~~---d~---g~~~G~a~V~F~~~~dA 106 (152)
+++.+||+|-+..+ ... ++.+++ .. |+++|||.|. .+.|.|
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalIY-dsve~a 82 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALIY-DSVEYA 82 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeeee-ehHHHH
Confidence 67888888877654 211 222222 22 8999999885 444433
No 166
>KOG4676|consensus
Probab=32.38 E-value=11 Score=32.89 Aligned_cols=68 Identities=15% Similarity=-0.009 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCHH-HHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEE
Q psy3068 55 HTVHMRGLPFRVNEK-DIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~te~-dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I 122 (152)
.++||++|...+... +...+|-.++-.-|.|++.. =.+.-||||+|.+...+..+|.-++..+..+.+
T Consensus 53 RtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~l 122 (479)
T KOG4676|consen 53 RTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPL 122 (479)
T ss_pred eeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCcc
Confidence 689999997766542 23333322222233334433 455567999999998888888777766666654
No 167
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=31.44 E-value=18 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=22.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK 88 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d 88 (152)
..+.++|+||.++.++|...| ++.+|.|+.|
T Consensus 70 ~~~~lTN~~W~i~~~~l~~~l---g~~~v~liND 100 (316)
T PF02685_consen 70 GKVRLTNLPWTIDADELAQRL---GIPRVRLIND 100 (316)
T ss_dssp TCEE-SSSCCEEEHHHCHCCC---T-TCEEEEEH
T ss_pred CEEEecCCCccccHHHHHHHh---CCceEEEEcc
Confidence 468899999999999999865 4446666655
No 168
>KOG2295|consensus
Probab=31.07 E-value=10 Score=34.38 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=45.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccC--CCcceEEEEEeC---CHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKN--GRPSGEADVYFA---THEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~--g~~~G~a~V~F~---~~~dA~~Al~~ 112 (152)
++|+|+|++-+++-.+|..+++.+ .+.++.+..+. ....-+..|+|. +...|..||..
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 578999999999999999999988 56677766554 455567888888 56667777754
No 169
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.74 E-value=1.3e+02 Score=18.31 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=29.5
Q ss_pred CHHHHHcccCCCC--ceEEEEeccCCCcceEEEEEeC--CHHHHHHHHHhCCCc
Q psy3068 67 NEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFA--THEDAMQAMSKDRTN 116 (152)
Q Consensus 67 te~dl~e~F~~~~--~~~v~i~~d~g~~~G~a~V~F~--~~~dA~~Al~~~~~~ 116 (152)
.-.+|.++|.+.+ +..+.............+|.+. +.+++.++|+..+..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCe
Confidence 4456778887664 5555543332323344555554 777888888876643
No 170
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.50 E-value=84 Score=21.97 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred CCCHHHHHcccCCC-C--ceEEEEecc--C---CCcceEEEEEeCCHHHHHH
Q psy3068 65 RVNEKDIVDFFSPV-V--PVYVDINYK--N---GRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 65 ~~te~dl~e~F~~~-~--~~~v~i~~d--~---g~~~G~a~V~F~~~~dA~~ 108 (152)
+.+..||++-+... + +..|.|..- . ++++|||.|. .+.+.|++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~IY-ds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKVY-DDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEEE-CCHHHHHh
Confidence 77888888766643 3 233333222 2 7888888874 55554443
No 171
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.04 E-value=1.6e+02 Score=19.24 Aligned_cols=59 Identities=8% Similarity=-0.062 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-C----ceEEEEe---ccCCCcceEEEEEeCCHHHHHHHHHhCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-V----PVYVDIN---YKNGRPSGEADVYFATHEDAMQAMSKDR 114 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~----~~~v~i~---~d~g~~~G~a~V~F~~~~dA~~Al~~~~ 114 (152)
.|..++||..+|.+||.+.-... . ...|..+ .+....|=||..+=.|++.++++-++.+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcC
Confidence 46788999999999998876632 1 1122222 2222334566666668888888877764
No 172
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=28.78 E-value=56 Score=21.71 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEec
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINY 87 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~ 87 (152)
.||.++..+.|..-|..-++..|.|++
T Consensus 57 ~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 57 RIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred ECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 799999999999999766888888875
No 173
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=28.59 E-value=72 Score=21.51 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.4
Q ss_pred cceEEEEEeCCHHHHHHHHH
Q psy3068 92 PSGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 92 ~~G~a~V~F~~~~dA~~Al~ 111 (152)
.-+.+.+.|.|.+++++|+.
T Consensus 52 ~d~i~el~Fds~e~~~~a~~ 71 (100)
T TIGR02118 52 YYGMCELYFDSIEDFQAAFD 71 (100)
T ss_pred eeEEEEEEECCHHHHHHHHc
Confidence 44889999999999999995
No 174
>KOG1975|consensus
Probab=27.63 E-value=2.7e+02 Score=24.16 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=36.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccC---C-CCceEEEEeccCCCcceEEE-EEeCCHHHHHHHHHh--CCCccCCeEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFS---P-VVPVYVDINYKNGRPSGEAD-VYFATHEDAMQAMSK--DRTNIRHRYIE 123 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~---~-~~~~~v~i~~d~g~~~G~a~-V~F~~~~dA~~Al~~--~~~~l~~R~I~ 123 (152)
..+|+.+ +++.+.|.+.+. + |.++.+. ||+ -.|++.+.|..||.. .--..+|..|-
T Consensus 173 ~a~f~~~---Dc~~~~l~d~~e~~dp~fDivScQ----------F~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 173 TAVFIAA---DCFKERLMDLLEFKDPRFDIVSCQ----------FAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred eeEEEEe---ccchhHHHHhccCCCCCcceeeee----------eeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 4678877 777777777773 3 5666666 333 267889999999875 22333454443
No 175
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=27.38 E-value=83 Score=21.86 Aligned_cols=45 Identities=7% Similarity=-0.099 Sum_probs=31.9
Q ss_pred HHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 68 EKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 68 e~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
..+|.+.+...+|.+..|..+.....-|++++..+.+.+.++|..
T Consensus 25 WPEv~~~l~~~Gi~~ysIf~~g~~~~LF~~~E~~~~~~~~~~l~~ 69 (106)
T PF05336_consen 25 WPEVLAALREAGIRNYSIFRDGDTGRLFMYMETDDFDADMAALAA 69 (106)
T ss_dssp -HHHHHHHHHCTEEEEEEEEETTTTEEEEEEEECT-CHHHHHGGG
T ss_pred CHHHHHHHHHCCCeEEEEEEeCCCCEEEEEEEecChhhHHHHccC
Confidence 456777777889998888777544578999999995555555543
No 176
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.92 E-value=69 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred CcceEEEEEeCCHHHHHHHHHh
Q psy3068 91 RPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 91 ~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
..+|+-||+=.+++++..|++-
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~g 63 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRG 63 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHhc
Confidence 4789999999999999999975
No 177
>KOG2318|consensus
Probab=26.84 E-value=1.8e+02 Score=26.80 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=48.2
Q ss_pred cEEEEcCCCCC-CCHHHHHcccCCCC-----ceEEEEeccC-CCc-----------------------------------
Q psy3068 55 HTVHMRGLPFR-VNEKDIVDFFSPVV-----PVYVDINYKN-GRP----------------------------------- 92 (152)
Q Consensus 55 ~~v~v~nLp~~-~te~dl~e~F~~~~-----~~~v~i~~d~-g~~----------------------------------- 92 (152)
..|-|.||.|+ +.-+||.-+|..|. |.+|.|+.-. |+.
T Consensus 175 ~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~~ 254 (650)
T KOG2318|consen 175 KRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDVD 254 (650)
T ss_pred ceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhHH
Confidence 78999999995 67789999998772 5577765433 221
Q ss_pred -------------ceEEEEEeCCHHHHHHHHHh-CCCccCC
Q psy3068 93 -------------SGEADVYFATHEDAMQAMSK-DRTNIRH 119 (152)
Q Consensus 93 -------------~G~a~V~F~~~~dA~~Al~~-~~~~l~~ 119 (152)
-=+|.|+|.+.++|..-.+. ++..+..
T Consensus 255 ~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 255 REKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred HHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 13799999999999999885 6655544
No 178
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.43 E-value=89 Score=23.19 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=38.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~ 111 (152)
...+++.+++..++..++.++|..++ +..+.+.... .....+.++.+....++..++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 36899999999999999999999885 4455555444 3344444444444444444443
No 179
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=25.20 E-value=57 Score=20.67 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEec
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINY 87 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~ 87 (152)
.||..+..+.+..-|.. ++..|.+++
T Consensus 63 ~LP~~vd~~~i~a~~~~-G~L~I~~pk 88 (88)
T cd06464 63 RLPEDVDPDKIKASLEN-GVLTITLPK 88 (88)
T ss_pred ECCCCcCHHHcEEEEeC-CEEEEEEcC
Confidence 39999999999998888 888887753
No 180
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.19 E-value=75 Score=20.57 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEE
Q psy3068 64 FRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADV 98 (152)
Q Consensus 64 ~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V 98 (152)
|..-+.+|..+|-+. .+.++.|.-.+.--+|-|||
T Consensus 28 F~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 28 FRLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 455677788888766 67788887776233466665
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=25.12 E-value=65 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=22.1
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCCceEEE
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVD 84 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~~~~v~ 84 (152)
.+.|.||||.++..-|..++...+...+.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~~~~~ 124 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKFRLAV 124 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCCceEE
Confidence 37799999999999999999644444333
No 182
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=24.95 E-value=62 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEec
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINY 87 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~ 87 (152)
.||.++..+.|..-|..-++..|.+++
T Consensus 57 ~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 57 RLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ECCCCcChHHeEEEECCCCEEEEEecC
Confidence 689999999999888656788877753
No 183
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.09 E-value=1.3e+02 Score=20.27 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=16.0
Q ss_pred ceEEEEec--cCCCcceEEEEEeCC
Q psy3068 80 PVYVDINY--KNGRPSGEADVYFAT 102 (152)
Q Consensus 80 ~~~v~i~~--d~g~~~G~a~V~F~~ 102 (152)
+.+|+|.. +.++.+++|-|.|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 44555543 338889999999876
No 184
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=24.08 E-value=1.3e+02 Score=21.64 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.9
Q ss_pred cccCCC--C-ceEEEEeccCCCcceEEEEEeCCHHHHHH
Q psy3068 73 DFFSPV--V-PVYVDINYKNGRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 73 e~F~~~--~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~ 108 (152)
+||..+ . +-+|+|-+.+.-.+|.|...|+++...++
T Consensus 5 QF~~Gi~E~~ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 43 (113)
T CHL00128 5 QFIKGIDEEVIPDVRLTRSRDGSTGTATFRFKNPNILDK 43 (113)
T ss_pred EEecCCCCCcCCceEEEEccCCCceEEEEEECCchhhhh
Confidence 567666 2 34899988884457999999999976554
No 185
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=23.99 E-value=66 Score=20.94 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEe
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDIN 86 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~ 86 (152)
.||.++..+.|..-|..-++..|.++
T Consensus 57 ~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 57 QLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred ECCCCCChHHeEEEeCCCcEEEEEec
Confidence 79999999999998876677777765
No 186
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=23.31 E-value=1.4e+02 Score=21.35 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=26.7
Q ss_pred cccCCC--C-ceEEEEeccCCCcceEEEEEeCCHHHHHH
Q psy3068 73 DFFSPV--V-PVYVDINYKNGRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 73 e~F~~~--~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~ 108 (152)
+||..+ . +-+|+|-+.+.-.+|.|...|+.+...++
T Consensus 2 QF~~Gi~E~~ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 40 (109)
T TIGR03047 2 QFFRGIDEEVIPDVRLTRSRDGGTGTALFRFENPKALDK 40 (109)
T ss_pred ccccCCCCCcCCceEEEEccCCCceEEEEEECCchhhhh
Confidence 577766 2 34899988884457999999999875444
No 187
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.82 E-value=2.1e+02 Score=18.11 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=42.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCC----HHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFAT----HEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~----~~dA~~Al~~~~~ 115 (152)
.+++|.++.=..-...|++-...+. +..|.+-.+ ++.+.|.|.+ .++...||+.-+.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~----~~~~~V~~d~~~~~~~~i~~ai~~aGy 65 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE----KGTATVTFDSNKVDIEAIIEAIEDAGY 65 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc----cCeEEEEEcCCcCCHHHHHHHHHHcCC
Confidence 5788888887777888998888884 667776655 4569999986 5667777766544
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.57 E-value=94 Score=25.46 Aligned_cols=32 Identities=6% Similarity=0.131 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDIN 86 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~ 86 (152)
....|.||||++|..=|..++... .+..+.+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 467899999999999999888764 33344443
No 189
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=2.7e+02 Score=24.66 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=43.7
Q ss_pred CCCCHHHHHcccCCCCce--EEEEeccCCCcceEEEEEeC-CHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 64 FRVNEKDIVDFFSPVVPV--YVDINYKNGRPSGEADVYFA-THEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 64 ~~~te~dl~e~F~~~~~~--~v~i~~d~g~~~G~a~V~F~-~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
..+..++|.+-++.+..+ |..++.-. .=.++|.|. +++.++++|+.-+....++.|.||-|
T Consensus 304 lG~~~e~i~~~l~~~~~v~GRmE~v~~~---~~~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~ 367 (475)
T COG0769 304 LGVDLEDILAGLETLKPVPGRMELVNIG---GKLVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGC 367 (475)
T ss_pred cCCCHHHHHHHHHhcCCCCCcceEecCC---CCeEEEEeccChHHHHHHHHHHHhhcCCcEEEEECc
Confidence 567889999888888533 54443322 236999998 88888999987556667888888765
No 190
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.44 E-value=1.3e+02 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=15.6
Q ss_pred ceEEEEecc-C-CCcceEEEEEeCC
Q psy3068 80 PVYVDINYK-N-GRPSGEADVYFAT 102 (152)
Q Consensus 80 ~~~v~i~~d-~-g~~~G~a~V~F~~ 102 (152)
|.+|+|..- . |+-+++|-|+|.+
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECC
Confidence 445555332 3 8888999999876
No 191
>PF01677 Herpes_UL7: Herpesvirus UL7 like; InterPro: IPR002600 This family consists of various functionally undefined proteins from the herpesviridae and UL7 from Bovine herpesvirus 1 [, ]. UL7 is not essential for virus replication in cell culture, and is found localized in the cytoplasm of infected cells accumulated around the nucleus but could not be detected in purified virions []. Members of the herpesviridae have a dsDNA genome and do not have a RNA stage during there replication.
Probab=21.91 E-value=31 Score=27.54 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=42.9
Q ss_pred CCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 66 VNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 66 ~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
-++.++.++++++... -..+||+++..-..||+...|...-..+.+|.+.+.+.+.
T Consensus 38 ~~~~~~~~Y~~~c~~~--------~~F~GF~~~~ll~~ED~V~~l~l~p~vlk~R~~l~rP~n~ 93 (224)
T PF01677_consen 38 GNEVSLEEYRKECLCS--------PAFKGFSFAVLLESEDRVTSLDLPPHVLKHRLVLYRPDNL 93 (224)
T ss_pred CccccHHHHHHHHhcC--------cCcCcEEEEEEecccceeeecCCChHhhhheeEEEccCCh
Confidence 5556666766654322 2558999999999999999999999999999877766543
No 192
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=21.57 E-value=1.2e+02 Score=22.29 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=18.2
Q ss_pred CCcceEEEEEeCCHHHHHHHHHhCC
Q psy3068 90 GRPSGEADVYFATHEDAMQAMSKDR 114 (152)
Q Consensus 90 g~~~G~a~V~F~~~~dA~~Al~~~~ 114 (152)
--+.|...|-|.++++|++.+++++
T Consensus 111 ~~pMg~~~~aF~~~~~A~~F~~~~G 135 (149)
T PF05573_consen 111 RGPMGPDLIAFASKEDAEAFAKEHG 135 (149)
T ss_dssp S-TTS--EEEES-HHHHHHHHHHTE
T ss_pred CCCCCCcccccCCHHHHHHHHHHcC
Confidence 4566899999999999999999874
No 193
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.47 E-value=1.9e+02 Score=18.14 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=35.7
Q ss_pred CCCCHHHHHcccCC-CCc--eEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy3068 64 FRVNEKDIVDFFSP-VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125 (152)
Q Consensus 64 ~~~te~dl~e~F~~-~~~--~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~ 125 (152)
.+++-++|.+...+ |.. ..+.|...+. -| ..|...+.+|.+.|++.... .+.+.++|+
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~--e~-d~v~l~sd~Dl~~a~~~~~~-~~~~~l~l~ 79 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDAVSFKLKYPDE--DG-DLVTISSDEDLEEAIEEARR-SGSKKLRLF 79 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEeeCC--CC-CEEEeCCHHHHHHHHHHHhh-cCCccEEEE
Confidence 77888887766553 232 3445533321 12 68999999999999997443 333444444
No 194
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=21.44 E-value=82 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=21.5
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEec
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINY 87 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~ 87 (152)
.||.++..++|+.-|..=++..|.+++
T Consensus 60 ~LP~~Vd~~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 60 RLPSNVDQSAITCSLSADGMLTFSGPK 86 (86)
T ss_pred ECCCCCChHHeEEEeCCCCEEEEEecC
Confidence 689999999999888555777777653
No 195
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=21.13 E-value=1.4e+02 Score=21.26 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred cccCCC--Cce-EEEEeccCCCcceEEEEEeCCHHH
Q psy3068 73 DFFSPV--VPV-YVDINYKNGRPSGEADVYFATHED 105 (152)
Q Consensus 73 e~F~~~--~~~-~v~i~~d~g~~~G~a~V~F~~~~d 105 (152)
+||..+ .++ +|+|-+.+.-.+|.|...|+++..
T Consensus 2 QF~~Gi~E~~~pdVrLtRsrdg~~g~a~f~F~~p~a 37 (108)
T PF03912_consen 2 QFIKGIDEEVVPDVRLTRSRDGGTGTATFYFENPKA 37 (108)
T ss_dssp ESSSS-------EEEEEE-TTS-SEEEEEEEES-GG
T ss_pred ccccCCCCccCCCeEEEEccCCCceEEEEEECCCcc
Confidence 577777 355 899988884457999999999854
No 196
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.10 E-value=3.6e+02 Score=23.94 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=37.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccC----CCCce-EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFS----PVVPV-YVDINYKN-GRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~----~~~~~-~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
..|.+..-..+.+--||..+|. .++|+ ++.|...+ -+.+...++.|.+.++|..|+..
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHH
Confidence 4555553333334456777666 35654 66665555 34456778899999999999875
No 197
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.80 E-value=1.9e+02 Score=21.56 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHcccC-------CCCceEEEEeccC--CCcceEE---------------EEEeCCHHHHHHHHHhCCCc
Q psy3068 62 LPFRVNEKDIVDFFS-------PVVPVYVDINYKN--GRPSGEA---------------DVYFATHEDAMQAMSKDRTN 116 (152)
Q Consensus 62 Lp~~~te~dl~e~F~-------~~~~~~v~i~~d~--g~~~G~a---------------~V~F~~~~dA~~Al~~~~~~ 116 (152)
|+.+.+.++|++|.. ++.|..|.|..-. |+.-|-| -|+|-++...++.++++...
T Consensus 37 l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~ik~~lKrnp~~ 115 (138)
T PF11215_consen 37 LSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPATIKAQLKRNPLP 115 (138)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHHHHHHHhcCCCC
Confidence 555777777777654 4567788776543 7666643 47777888888777776543
No 198
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=20.68 E-value=72 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEec
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINY 87 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~ 87 (152)
.||.++..+.|+.-|..=++..|.+++
T Consensus 57 ~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 57 ILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred ECCCCCChhhEEEEecCCCEEEEEecC
Confidence 789999999999988755777777653
No 199
>PRK01617 hypothetical protein; Provisional
Probab=20.67 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=22.9
Q ss_pred CHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeC
Q psy3068 67 NEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFA 101 (152)
Q Consensus 67 te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~ 101 (152)
..++|.+++..+.-..+.|+... +...-.++|+|.
T Consensus 62 ~~~~i~~~~~~~~w~~L~Il~~~~g~~~~~g~VeF~ 97 (154)
T PRK01617 62 WRAEIIAGFANTEWLGLTVFEHTWGDADNEGFVEFV 97 (154)
T ss_pred hHHHHhhcccCCEEeccEEEEecCCCCCceEEEEEE
Confidence 45677887766555566665443 444567899998
No 200
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=20.07 E-value=96 Score=24.23 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=27.8
Q ss_pred CHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 67 NEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 67 te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
+.++..+|...+..--+.|-.| |...|-+.+...+.++|.+||+.
T Consensus 25 ~~~~A~~~l~~~~~p~~ViKad-Gla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPYVVIKAD-GLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp SHHHHHHHHHHHSSSEEEEEES-SSCTTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCceEEccC-CCCCCCEEEEeCCHHHHHHHHHH
Confidence 4666677776553211233333 44444456677999999999996
Done!