Query psy3068
Match_columns 152
No_of_seqs 177 out of 1325
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:52:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wez_A HnRNP H', FTP-3, hetero 99.9 3.5E-23 1.2E-27 144.2 11.3 79 55-133 16-95 (102)
2 2dnn_A RNA-binding protein 12; 99.9 3.2E-22 1.1E-26 141.5 8.8 78 54-131 16-94 (109)
3 1wg5_A Heterogeneous nuclear r 99.8 9E-21 3.1E-25 131.7 11.4 79 54-132 15-96 (104)
4 2hgm_A HNRPF protein, heteroge 99.8 5E-22 1.7E-26 144.2 4.8 76 55-130 43-121 (126)
5 2hgn_A Heterogeneous nuclear r 99.8 3.1E-22 1E-26 147.4 3.7 78 55-132 47-125 (139)
6 2db1_A Heterogeneous nuclear r 99.8 8.4E-22 2.9E-26 140.3 5.6 78 54-131 17-99 (118)
7 2dha_A FLJ20171 protein; RRM d 99.8 7.1E-22 2.4E-26 142.7 4.3 77 55-131 24-106 (123)
8 2dgw_A Probable RNA-binding pr 99.8 1.7E-20 5.7E-25 126.7 10.7 78 55-132 11-89 (91)
9 2hgl_A HNRPF protein, heteroge 99.8 4.8E-21 1.6E-25 140.5 7.9 77 55-131 45-126 (136)
10 2dng_A Eukaryotic translation 99.8 1.9E-19 6.4E-24 124.2 12.1 78 55-132 16-95 (103)
11 4fxv_A ELAV-like protein 1; RN 99.8 4.9E-20 1.7E-24 127.6 9.1 75 55-129 20-98 (99)
12 2lmi_A GRSF-1, G-rich sequence 99.8 1.7E-20 5.6E-25 131.0 5.3 78 54-131 11-93 (107)
13 1x4c_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 124.0 12.1 86 54-144 15-107 (108)
14 2cpy_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 130.2 7.3 77 55-131 16-95 (114)
15 2do4_A Squamous cell carcinoma 99.8 5.7E-19 2E-23 121.0 12.2 78 55-132 18-98 (100)
16 2dnz_A Probable RNA-binding pr 99.8 4.6E-19 1.6E-23 120.1 11.4 79 55-133 6-88 (95)
17 2lxi_A RNA-binding protein 10; 99.8 1.8E-20 6.1E-25 127.7 4.3 77 55-131 2-84 (91)
18 1wi8_A EIF-4B, eukaryotic tran 99.8 3.6E-19 1.2E-23 123.0 10.9 78 55-132 16-96 (104)
19 2cq0_A Eukaryotic translation 99.8 9.2E-19 3.1E-23 120.6 12.5 79 54-132 15-97 (103)
20 2fc8_A NCL protein; structure 99.8 9.9E-19 3.4E-23 120.1 12.1 77 55-133 16-95 (102)
21 2dgs_A DAZ-associated protein 99.8 7.6E-19 2.6E-23 120.2 11.4 79 54-132 10-91 (99)
22 2lkz_A RNA-binding protein 5; 99.8 1E-19 3.4E-24 125.7 7.0 75 55-129 10-94 (95)
23 2fy1_A RNA-binding motif prote 99.8 6.4E-19 2.2E-23 124.9 11.2 77 55-131 8-87 (116)
24 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-19 2.3E-23 127.3 11.0 90 54-143 42-135 (139)
25 3s8s_A Histone-lysine N-methyl 99.8 5.3E-19 1.8E-23 124.7 10.1 76 55-130 7-86 (110)
26 1wel_A RNA-binding protein 12; 99.8 2.9E-19 9.9E-24 127.5 8.5 78 54-131 25-105 (124)
27 3s7r_A Heterogeneous nuclear r 99.8 7E-19 2.4E-23 117.6 9.6 74 54-127 11-87 (87)
28 1x5u_A Splicing factor 3B subu 99.8 1.1E-18 3.8E-23 120.4 10.9 79 54-132 15-97 (105)
29 2dh8_A DAZ-associated protein 99.8 5.3E-19 1.8E-23 122.2 8.7 78 55-132 17-97 (105)
30 1x5t_A Splicing factor 3B subu 99.8 6.6E-19 2.3E-23 119.5 9.0 78 55-132 6-88 (96)
31 1x4b_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 122.9 10.1 79 54-132 27-108 (116)
32 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6.2E-23 120.9 11.3 79 54-132 15-105 (113)
33 3p5t_L Cleavage and polyadenyl 99.8 1.2E-19 4.1E-24 122.7 4.9 77 55-131 2-84 (90)
34 4f25_A Polyadenylate-binding p 99.8 6.8E-19 2.3E-23 124.3 8.8 77 55-131 6-84 (115)
35 2cpz_A CUG triplet repeat RNA- 99.8 3.8E-18 1.3E-22 119.8 12.4 79 54-132 25-107 (115)
36 3ex7_B RNA-binding protein 8A; 99.8 5.9E-19 2E-23 125.6 8.0 78 54-131 22-103 (126)
37 1s79_A Lupus LA protein; RRM, 99.8 6.2E-19 2.1E-23 123.1 7.7 73 55-127 12-86 (103)
38 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.3E-23 119.9 9.1 79 54-132 9-92 (104)
39 2dnm_A SRP46 splicing factor; 99.8 1.4E-18 4.7E-23 119.7 9.3 78 55-132 14-95 (103)
40 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-18 9.4E-23 116.0 10.6 73 55-127 17-93 (94)
41 2do0_A HnRNP M, heterogeneous 99.8 9.1E-18 3.1E-22 117.3 13.6 77 55-131 16-95 (114)
42 2cqp_A RNA-binding protein 12; 99.8 1.5E-18 5.2E-23 118.3 9.3 78 54-131 15-96 (98)
43 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.7E-23 116.8 8.3 77 55-131 7-86 (89)
44 2d9p_A Polyadenylate-binding p 99.8 8.5E-18 2.9E-22 115.7 13.1 78 55-132 16-95 (103)
45 2cqd_A RNA-binding region cont 99.8 5.7E-18 1.9E-22 119.0 12.4 77 54-130 17-96 (116)
46 3md1_A Nuclear and cytoplasmic 99.8 2.2E-18 7.6E-23 113.8 9.7 77 55-131 2-82 (83)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-18 4.2E-23 116.1 8.5 76 55-130 7-86 (87)
48 1x5s_A Cold-inducible RNA-bind 99.8 2E-18 6.8E-23 118.5 9.8 78 55-132 13-94 (102)
49 1whw_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 116.8 10.8 78 55-132 9-90 (99)
50 2cqc_A Arginine/serine-rich sp 99.8 2.8E-18 9.6E-23 116.0 10.2 76 54-129 15-94 (95)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 4.6E-18 1.6E-22 117.2 11.4 79 54-132 15-99 (105)
52 2ek1_A RNA-binding protein 12; 99.8 6.5E-19 2.2E-23 119.4 6.8 75 54-128 15-93 (95)
53 1x4a_A Splicing factor, argini 99.8 7.7E-18 2.6E-22 117.1 12.4 78 54-132 22-101 (109)
54 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.8E-18 9.4E-23 126.6 10.4 78 54-131 39-120 (156)
55 2cq3_A RNA-binding protein 9; 99.8 1.2E-17 4E-22 115.0 12.9 78 55-132 16-95 (103)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.7E-23 118.3 9.1 78 55-132 13-94 (102)
57 2cqg_A TDP-43, TAR DNA-binding 99.8 8.5E-18 2.9E-22 115.7 12.0 77 55-132 16-95 (103)
58 2la6_A RNA-binding protein FUS 99.8 4.2E-18 1.4E-22 116.6 10.3 75 54-128 13-99 (99)
59 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-17 4.7E-22 116.7 13.1 79 54-132 15-97 (115)
60 2ywk_A Putative RNA-binding pr 99.8 2E-18 6.9E-23 116.9 8.5 75 54-128 16-93 (95)
61 2dgv_A HnRNP M, heterogeneous 99.8 3.4E-18 1.2E-22 115.2 9.4 77 55-131 9-87 (92)
62 1x4h_A RNA-binding protein 28; 99.8 8.1E-18 2.8E-22 116.9 11.5 78 55-132 16-103 (111)
63 2fc9_A NCL protein; structure 99.8 6.7E-18 2.3E-22 115.8 10.5 76 55-132 16-93 (101)
64 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-18 4.2E-23 119.9 6.6 78 54-131 19-99 (100)
65 2jwn_A Embryonic polyadenylate 99.8 3.2E-18 1.1E-22 121.5 8.8 78 55-132 37-117 (124)
66 2x1f_A MRNA 3'-END-processing 99.8 3.6E-18 1.2E-22 116.4 8.6 77 55-131 3-83 (96)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.4E-18 1.2E-22 113.4 7.8 74 54-127 7-84 (85)
68 2mss_A Protein (musashi1); RNA 99.7 1.2E-18 4E-23 113.5 5.4 72 56-127 1-75 (75)
69 2cph_A RNA binding motif prote 99.7 1.5E-17 5.1E-22 114.9 11.2 79 54-132 15-99 (107)
70 3ulh_A THO complex subunit 4; 99.7 6.4E-18 2.2E-22 116.9 9.4 75 54-128 29-106 (107)
71 2jrs_A RNA-binding protein 39; 99.7 7.8E-18 2.7E-22 117.9 9.8 78 54-131 26-107 (108)
72 2rs2_A Musashi-1, RNA-binding 99.7 5.3E-18 1.8E-22 118.8 8.7 78 54-131 25-105 (109)
73 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.4E-17 8.2E-22 113.4 11.4 78 54-131 15-94 (103)
74 2dgp_A Bruno-like 4, RNA bindi 99.7 7.2E-18 2.5E-22 116.5 8.8 79 54-132 13-98 (106)
75 2kxn_B Transformer-2 protein h 99.7 6.9E-18 2.4E-22 121.9 9.0 78 54-131 46-127 (129)
76 1p27_B RNA-binding protein 8A; 99.7 8.2E-18 2.8E-22 116.2 8.9 78 54-131 23-104 (106)
77 3beg_B Splicing factor, argini 99.7 4.3E-18 1.5E-22 120.3 7.5 73 55-132 17-96 (115)
78 2cpf_A RNA binding motif prote 99.7 1.2E-17 4E-22 113.9 9.2 78 55-132 6-90 (98)
79 3n9u_C Cleavage and polyadenyl 99.7 5.2E-18 1.8E-22 126.5 7.9 75 55-129 56-136 (156)
80 2div_A TRNA selenocysteine ass 99.7 8.8E-18 3E-22 114.7 8.0 77 55-131 10-95 (99)
81 4a8x_A RNA-binding protein wit 99.7 8.8E-18 3E-22 111.9 7.7 77 55-131 5-86 (88)
82 2khc_A Testis-specific RNP-typ 99.7 8.5E-18 2.9E-22 118.3 8.0 74 54-127 40-117 (118)
83 1iqt_A AUF1, heterogeneous nuc 99.7 9.4E-19 3.2E-23 113.8 2.8 72 56-127 1-75 (75)
84 2cq4_A RNA binding motif prote 99.7 6.8E-18 2.3E-22 118.3 7.4 76 55-130 26-104 (114)
85 2cpi_A CCR4-NOT transcription 99.7 2.4E-17 8.2E-22 115.5 9.9 78 55-132 16-103 (111)
86 1x4e_A RNA binding motif, sing 99.7 5.8E-18 2E-22 112.6 6.2 72 55-126 6-81 (85)
87 1oo0_B CG8781-PA, drosophila Y 99.7 1.3E-17 4.4E-22 116.0 8.2 78 54-131 26-107 (110)
88 2kt5_A RNA and export factor-b 99.7 1.2E-16 4.2E-21 113.5 13.4 78 54-131 35-115 (124)
89 3ns6_A Eukaryotic translation 99.7 2.8E-18 9.6E-23 118.4 4.6 76 54-129 6-92 (100)
90 2jvr_A Nucleolar protein 3; RN 99.7 6E-18 2E-22 120.0 6.4 76 54-131 28-106 (111)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.7E-17 5.9E-22 123.7 9.1 79 54-132 72-154 (165)
92 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4.2E-22 114.7 7.6 77 55-131 9-89 (104)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.4E-18 2.2E-22 110.1 5.8 72 56-127 2-76 (77)
94 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.4E-22 115.9 8.5 77 54-130 29-107 (109)
95 1l3k_A Heterogeneous nuclear r 99.7 2.6E-17 9E-22 123.3 9.3 78 55-132 105-185 (196)
96 1x5o_A RNA binding motif, sing 99.7 2.5E-16 8.4E-21 110.1 13.5 77 54-130 25-112 (114)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.7E-17 1.3E-21 117.6 9.5 73 55-127 64-140 (140)
98 3q2s_C Cleavage and polyadenyl 99.7 1.1E-17 3.8E-22 131.6 7.3 74 55-128 69-148 (229)
99 2e5j_A Methenyltetrahydrofolat 99.7 3.6E-17 1.2E-21 111.7 8.6 76 54-131 19-95 (97)
100 2dgx_A KIAA0430 protein; RRM d 99.7 3.5E-17 1.2E-21 111.8 8.2 76 55-131 10-91 (96)
101 2cq1_A PTB-like protein L; RRM 99.7 9.3E-17 3.2E-21 111.9 10.4 73 55-131 16-92 (101)
102 1why_A Hypothetical protein ri 99.7 1.1E-16 3.6E-21 109.2 10.4 74 55-132 18-95 (97)
103 2lcw_A RNA-binding protein FUS 99.5 9.2E-19 3.1E-23 123.3 0.0 79 54-132 7-97 (116)
104 1fj7_A Nucleolin RBD1, protein 99.7 5.7E-18 2E-22 116.2 3.8 77 54-131 17-96 (101)
105 2m2b_A RNA-binding protein 10; 99.7 3.2E-17 1.1E-21 118.0 7.9 77 55-132 24-110 (131)
106 2kn4_A Immunoglobulin G-bindin 99.7 5.1E-17 1.7E-21 119.5 8.8 78 54-131 70-151 (158)
107 2hvz_A Splicing factor, argini 99.7 4E-17 1.4E-21 111.9 7.8 75 55-132 1-77 (101)
108 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.7E-22 116.6 6.2 74 54-131 16-93 (105)
109 2xs2_A Deleted in azoospermia- 99.7 1.1E-17 3.8E-22 114.9 4.3 77 54-131 9-87 (102)
110 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 113.3 7.0 78 54-131 8-93 (109)
111 2lea_A Serine/arginine-rich sp 99.7 3E-17 1E-21 119.3 6.5 78 55-132 48-129 (135)
112 2dnq_A RNA-binding protein 4B; 99.7 2.1E-16 7E-21 106.4 9.8 73 54-132 8-82 (90)
113 2ki2_A SS-DNA binding protein 99.7 1.7E-17 5.7E-22 111.5 4.4 76 55-131 2-81 (90)
114 3r27_A HnRNP L, heterogeneous 99.7 1.2E-16 4.1E-21 111.7 8.7 74 54-131 21-98 (100)
115 2krb_A Eukaryotic translation 99.7 2.5E-17 8.7E-22 109.0 4.9 70 55-124 2-80 (81)
116 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 114.5 9.1 74 54-131 31-108 (119)
117 1l3k_A Heterogeneous nuclear r 99.7 1.2E-16 4E-21 119.8 9.0 78 54-131 13-93 (196)
118 1fjc_A Nucleolin RBD2, protein 99.7 1E-16 3.4E-21 108.8 7.7 76 54-131 16-92 (96)
119 1x4f_A Matrin 3; structural ge 99.7 6E-16 2.1E-20 110.1 12.0 74 54-131 25-103 (112)
120 2nlw_A Eukaryotic translation 99.7 1E-16 3.5E-21 111.3 7.8 78 54-131 15-101 (105)
121 2f3j_A RNA and export factor b 99.7 5.2E-16 1.8E-20 117.7 12.3 77 54-130 88-167 (177)
122 1wex_A Hypothetical protein (r 99.7 4.3E-16 1.5E-20 109.0 10.9 73 55-131 16-92 (104)
123 1wg1_A KIAA1579 protein, homol 99.7 1.4E-16 4.8E-21 107.0 7.9 72 55-130 6-78 (88)
124 2cpx_A Hypothetical protein FL 99.7 5.2E-17 1.8E-21 113.6 5.7 77 54-132 25-107 (115)
125 2cpd_A Apobec-1 stimulating pr 99.7 8.4E-16 2.9E-20 105.0 11.5 73 54-132 15-91 (99)
126 4f02_A Polyadenylate-binding p 99.7 1.9E-16 6.7E-21 121.9 9.2 77 55-131 16-96 (213)
127 1x4d_A Matrin 3; structural ge 99.7 2.9E-16 9.9E-21 109.8 9.0 73 55-131 16-93 (102)
128 2cpj_A Non-POU domain-containi 99.7 1E-15 3.4E-20 104.6 11.2 75 54-132 15-91 (99)
129 2dgu_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 107.4 9.4 72 55-132 12-85 (103)
130 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-16 7.1E-21 108.3 7.4 70 55-128 8-79 (89)
131 2dgt_A RNA-binding protein 30; 99.7 1E-15 3.4E-20 103.3 10.7 73 54-132 10-84 (92)
132 2cjk_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 116.5 6.8 76 55-130 88-166 (167)
133 2kvi_A Nuclear polyadenylated 99.7 2.8E-16 9.6E-21 107.1 7.5 73 54-132 10-85 (96)
134 3lqv_A PRE-mRNA branch site pr 99.6 4.5E-16 1.5E-20 108.9 8.6 76 54-130 8-85 (115)
135 3md3_A Nuclear and cytoplasmic 99.6 8.9E-16 3E-20 111.6 10.3 76 54-129 87-166 (166)
136 3pgw_S U1-70K; protein-RNA com 99.6 6.5E-16 2.2E-20 131.9 10.9 77 55-131 103-183 (437)
137 1fxl_A Paraneoplastic encephal 99.6 6.7E-16 2.3E-20 112.3 9.4 77 55-131 3-83 (167)
138 2qfj_A FBP-interacting repress 99.6 8.3E-16 2.8E-20 116.7 9.8 77 55-131 126-206 (216)
139 2cqh_A IGF-II mRNA-binding pro 99.6 2.6E-16 8.8E-21 106.3 6.1 73 55-132 9-85 (93)
140 2la4_A Nuclear and cytoplasmic 99.6 4.1E-16 1.4E-20 106.8 7.1 73 53-129 26-100 (101)
141 2dnp_A RNA-binding protein 14; 99.6 8E-16 2.7E-20 103.4 8.4 72 55-132 10-83 (90)
142 1x4g_A Nucleolysin TIAR; struc 99.6 5.2E-16 1.8E-20 108.0 7.7 76 52-131 23-100 (109)
143 1nu4_A U1A RNA binding domain; 99.6 2.1E-16 7.2E-21 107.2 5.5 77 54-131 8-90 (97)
144 2voo_A Lupus LA protein; RNA-b 99.6 8E-16 2.7E-20 118.1 9.4 74 55-128 110-185 (193)
145 3d2w_A TAR DNA-binding protein 99.6 5.8E-16 2E-20 104.9 7.5 74 54-131 11-85 (89)
146 2ytc_A PRE-mRNA-splicing facto 99.6 8.3E-16 2.9E-20 101.9 8.0 70 54-127 12-84 (85)
147 3md3_A Nuclear and cytoplasmic 99.6 6.2E-16 2.1E-20 112.4 7.9 77 55-131 1-80 (166)
148 1wf1_A RNA-binding protein RAL 99.6 9.7E-16 3.3E-20 106.7 8.4 71 55-131 28-101 (110)
149 1b7f_A Protein (SXL-lethal pro 99.6 6.9E-16 2.3E-20 112.8 8.0 77 55-131 4-84 (168)
150 1wf0_A TDP-43, TAR DNA-binding 99.6 6.5E-16 2.2E-20 103.5 6.7 74 55-132 6-80 (88)
151 4f02_A Polyadenylate-binding p 99.6 8.7E-16 3E-20 118.2 8.3 76 55-130 104-181 (213)
152 2hzc_A Splicing factor U2AF 65 99.6 4.4E-16 1.5E-20 103.5 5.7 68 55-126 7-86 (87)
153 2xnq_A Nuclear polyadenylated 99.6 1.8E-15 6.3E-20 103.7 9.0 72 54-131 22-96 (97)
154 2jvo_A Nucleolar protein 3; nu 99.6 1.7E-15 5.9E-20 105.9 8.9 72 54-131 31-104 (108)
155 2e5g_A U6 snRNA-specific termi 99.6 2.8E-15 9.6E-20 101.6 9.6 72 55-131 9-83 (94)
156 2i2y_A Fusion protein consists 99.6 1.3E-15 4.5E-20 111.5 8.1 75 54-131 73-149 (150)
157 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5.3E-20 106.7 8.2 70 55-125 9-83 (114)
158 2a3j_A U1 small nuclear ribonu 99.6 1.2E-15 4.3E-20 110.3 7.7 77 54-131 29-111 (127)
159 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 112.2 7.5 75 54-128 94-172 (172)
160 1whx_A Hypothetical protein ri 99.6 1E-15 3.5E-20 107.5 6.7 73 54-130 10-84 (111)
161 2qfj_A FBP-interacting repress 99.6 2.1E-15 7.2E-20 114.5 8.1 76 55-130 29-108 (216)
162 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4E-20 111.6 6.3 74 55-129 4-80 (167)
163 2e44_A Insulin-like growth fac 99.6 3.7E-15 1.3E-19 101.0 8.3 75 55-131 16-93 (96)
164 2yh0_A Splicing factor U2AF 65 99.6 2.7E-15 9.2E-20 112.5 8.3 78 54-131 114-195 (198)
165 3nmr_A Cugbp ELAV-like family 99.6 4.2E-15 1.4E-19 109.0 8.6 74 54-127 95-174 (175)
166 1b7f_A Protein (SXL-lethal pro 99.6 9.3E-15 3.2E-19 106.7 10.1 74 54-127 89-168 (168)
167 3egn_A RNA-binding protein 40; 99.6 1.7E-15 5.9E-20 110.0 6.0 77 55-131 46-131 (143)
168 1fje_B Nucleolin RBD12, protei 99.6 7E-15 2.4E-19 108.5 9.1 74 54-130 99-174 (175)
169 1x5p_A Negative elongation fac 99.6 5.3E-14 1.8E-18 95.7 11.6 73 54-132 15-89 (97)
170 3nmr_A Cugbp ELAV-like family 99.6 1E-14 3.6E-19 106.9 8.2 77 55-131 4-89 (175)
171 1fxl_A Paraneoplastic encephal 99.5 1.7E-14 5.9E-19 104.8 8.5 72 55-126 89-166 (167)
172 1sjr_A Polypyrimidine tract-bi 99.5 1.9E-14 6.4E-19 108.7 8.7 75 55-131 47-125 (164)
173 1fje_B Nucleolin RBD12, protei 99.5 2E-15 6.7E-20 111.5 3.0 77 54-131 13-92 (175)
174 3tyt_A Heterogeneous nuclear r 99.5 2.2E-14 7.5E-19 110.8 8.8 72 55-129 5-79 (205)
175 3smz_A Protein raver-1, ribonu 99.5 3.8E-14 1.3E-18 112.5 10.4 78 54-131 184-265 (284)
176 2g4b_A Splicing factor U2AF 65 99.5 6.5E-15 2.2E-19 108.1 5.2 73 55-131 5-89 (172)
177 3pgw_A U1-A; protein-RNA compl 99.5 5.1E-14 1.7E-18 111.6 10.5 77 54-131 9-91 (282)
178 3zzy_A Polypyrimidine tract-bi 99.5 9.7E-14 3.3E-18 101.1 9.9 74 55-131 29-107 (130)
179 2j8a_A Histone-lysine N-methyl 99.5 2.4E-14 8.1E-19 104.6 6.6 74 55-128 3-94 (136)
180 2diu_A KIAA0430 protein; struc 99.5 2.6E-14 8.8E-19 99.0 6.3 69 55-131 10-85 (96)
181 2ghp_A U4/U6 snRNA-associated 99.5 3.7E-14 1.3E-18 112.9 7.8 75 54-128 41-116 (292)
182 2ghp_A U4/U6 snRNA-associated 99.5 3.5E-14 1.2E-18 113.1 7.6 77 54-130 210-291 (292)
183 2e5i_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 99.4 9.5 72 56-131 27-103 (124)
184 2yh0_A Splicing factor U2AF 65 99.5 3.1E-14 1.1E-18 106.6 6.3 72 55-130 5-88 (198)
185 2pe8_A Splicing factor 45; RRM 99.5 1.3E-13 4.4E-18 96.5 9.0 76 55-130 9-94 (105)
186 3smz_A Protein raver-1, ribonu 99.5 8.8E-14 3E-18 110.4 9.0 78 54-131 95-176 (284)
187 2adc_A Polypyrimidine tract-bi 99.5 4.3E-14 1.5E-18 109.8 6.8 74 54-130 34-110 (229)
188 2cq2_A Hypothetical protein LO 99.5 3.4E-14 1.2E-18 101.3 5.5 73 55-131 26-107 (114)
189 2bz2_A Negative elongation fac 99.5 1.2E-13 4.3E-18 98.5 8.5 72 54-131 39-112 (121)
190 3pgw_A U1-A; protein-RNA compl 99.5 2.5E-13 8.6E-18 107.6 9.3 73 53-128 206-281 (282)
191 1qm9_A Polypyrimidine tract-bi 99.5 7E-14 2.4E-18 105.3 5.8 73 55-130 4-79 (198)
192 3tyt_A Heterogeneous nuclear r 99.4 7.7E-14 2.6E-18 107.7 5.8 66 55-120 124-193 (205)
193 3sde_A Paraspeckle component 1 99.4 1.7E-13 5.7E-18 108.5 7.7 77 55-131 97-180 (261)
194 3sde_A Paraspeckle component 1 99.4 4.7E-13 1.6E-17 105.9 8.7 72 54-129 22-95 (261)
195 2dit_A HIV TAT specific factor 99.4 2E-12 7E-17 90.4 10.2 75 55-131 16-103 (112)
196 1qm9_A Polypyrimidine tract-bi 99.4 3.7E-13 1.3E-17 101.4 6.3 74 54-130 120-197 (198)
197 2adc_A Polypyrimidine tract-bi 99.4 1.1E-12 3.6E-17 101.9 8.3 74 54-130 151-228 (229)
198 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.7E-18 96.0 2.1 69 59-127 20-103 (104)
199 3v4m_A Splicing factor U2AF 65 99.4 9.8E-13 3.4E-17 91.8 6.3 75 55-129 6-96 (105)
200 3u1l_A PRE-mRNA-splicing facto 99.3 1.5E-12 5E-17 103.6 6.5 74 54-131 134-230 (240)
201 2d9o_A DNAJ (HSP40) homolog, s 99.3 2E-11 6.9E-16 84.8 10.3 73 55-131 11-91 (100)
202 3ue2_A Poly(U)-binding-splicin 99.3 9E-12 3.1E-16 88.9 7.7 75 55-129 21-108 (118)
203 3tht_A Alkylated DNA repair pr 99.1 5.1E-11 1.8E-15 99.2 6.7 63 50-117 15-81 (345)
204 3s6e_A RNA-binding protein 39; 99.1 5.8E-10 2E-14 79.0 7.9 73 55-129 8-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.0 3.4E-09 1.2E-13 76.1 8.7 71 54-128 18-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 98.9 4E-09 1.4E-13 72.2 6.8 70 55-130 8-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 8.9E-09 3E-13 70.9 3.6 69 54-128 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.6 1.2E-07 4.2E-12 72.8 6.7 75 55-129 125-212 (222)
209 2dhx_A Poly (ADP-ribose) polym 98.0 1.7E-05 5.7E-10 55.3 7.2 71 55-131 9-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.8 3.6E-05 1.2E-09 54.4 5.6 68 55-126 22-96 (117)
211 1whv_A Poly(A)-specific ribonu 97.3 0.00098 3.3E-08 45.9 7.5 53 54-112 16-68 (100)
212 1wwh_A Nucleoporin 35, nucleop 96.9 0.0026 9E-08 45.2 6.9 70 54-128 24-95 (119)
213 3ctr_A Poly(A)-specific ribonu 96.9 0.00087 3E-08 46.3 3.9 52 55-112 7-58 (101)
214 2kn4_A Immunoglobulin G-bindin 96.7 0.0016 5.6E-08 46.7 4.6 31 82-112 2-32 (158)
215 1uw4_A UPF3X; nonsense mediate 96.7 0.0056 1.9E-07 41.4 6.7 63 55-117 2-70 (91)
216 1wey_A Calcipressin 1; structu 96.2 0.011 3.6E-07 41.1 5.7 73 55-131 6-85 (104)
217 2l08_A Regulator of nonsense t 95.8 0.014 4.7E-07 40.0 4.7 62 55-116 10-77 (97)
218 3pq1_A Poly(A) RNA polymerase; 95.5 0.0054 1.9E-07 52.7 2.4 55 54-112 53-108 (464)
219 2i2y_A Fusion protein consists 94.3 0.036 1.2E-06 39.3 3.7 45 84-129 4-50 (150)
220 3p3d_A Nucleoporin 53; structu 93.0 0.1 3.6E-06 37.5 4.0 74 55-129 8-98 (132)
221 4e8u_A Putative uncharacterize 92.5 0.21 7.3E-06 37.4 5.3 58 55-112 13-82 (172)
222 3d45_A Poly(A)-specific ribonu 90.1 0.57 2E-05 40.3 6.4 52 55-112 441-492 (507)
223 4eyt_A Telomerase associated p 46.3 65 0.0022 21.6 6.7 52 55-112 13-65 (129)
224 3dxs_X Copper-transporting ATP 44.6 38 0.0013 19.7 4.3 57 55-115 4-65 (74)
225 1vd2_A Protein kinase C, IOTA 43.9 33 0.0011 22.5 4.2 66 57-127 17-89 (89)
226 4fdd_B RNA-binding protein FUS 39.7 18 0.0006 18.9 1.8 16 17-32 2-17 (29)
227 3fry_A Probable copper-exporti 38.2 50 0.0017 19.3 4.2 57 55-115 7-63 (73)
228 3q9p_A Heat shock protein beta 36.5 21 0.0007 22.7 2.2 28 61-88 57-84 (85)
229 2lfv_A Protein DAMX; cell divi 41.8 7.8 0.00027 26.3 0.0 57 53-113 24-84 (106)
230 4a4j_A Pacszia, cation-transpo 34.5 64 0.0022 18.2 4.8 57 55-115 4-64 (69)
231 1x8d_A Hypothetical protein YI 33.0 48 0.0017 22.1 3.7 43 68-111 26-68 (104)
232 1f0x_A DLDH, D-lactate dehydro 31.2 50 0.0017 28.6 4.4 43 70-112 246-295 (571)
233 1yg0_A COP associated protein; 29.3 73 0.0025 17.3 4.8 55 56-114 4-62 (66)
234 1xn9_A 30S ribosomal protein S 29.3 66 0.0022 21.6 3.8 54 56-110 20-81 (101)
235 2l3m_A Copper-ION-binding prot 27.7 83 0.0028 17.4 4.3 57 55-115 7-68 (71)
236 2i9x_A Putative septation prot 27.2 71 0.0024 20.8 3.6 24 79-102 5-30 (87)
237 4bby_A Alkyldihydroxyacetoneph 27.1 63 0.0021 28.3 4.4 53 60-112 349-407 (658)
238 2qyc_A Ferredoxin-like protein 26.8 40 0.0014 21.8 2.4 50 61-110 12-73 (103)
239 1ywx_A 30S ribosomal protein S 26.5 1.4E+02 0.0047 20.0 5.1 52 56-108 20-79 (102)
240 2kkc_A Sequestosome-1; P62, PB 25.3 1.5E+02 0.0053 19.7 5.7 48 70-126 50-99 (102)
241 2ktr_A Sequestosome-1; autopha 25.2 1.7E+02 0.0058 20.1 5.7 50 69-127 64-115 (117)
242 2ftr_A BH0200; structural geno 24.0 73 0.0025 20.9 3.3 20 93-112 61-80 (108)
243 2ia9_A Putative septation prot 23.8 87 0.003 21.0 3.6 24 79-102 5-30 (100)
244 3bf4_A Ethyl TERT-butyl ether 23.3 70 0.0024 22.1 3.2 19 93-111 77-95 (127)
245 3bgu_A Ferredoxin-like protein 23.2 69 0.0024 21.4 3.1 51 61-111 29-91 (116)
246 1cpz_A Protein (COPZ); copper 22.6 1E+02 0.0035 16.7 6.3 56 56-115 3-63 (68)
247 2i9z_A Putative septation prot 22.3 96 0.0033 21.0 3.6 24 79-102 5-30 (105)
248 2ofg_X Zinc-transporting ATPas 21.8 1.6E+02 0.0056 18.7 6.6 58 55-116 10-72 (111)
249 1ip9_A BEM1 protein; ubiquitin 21.4 34 0.0012 22.4 1.1 56 57-115 23-79 (85)
250 1qyr_A KSGA, high level kasuga 21.3 46 0.0016 25.4 2.1 24 55-78 91-114 (252)
251 2y1y_A Alpha-crystallin B chai 20.5 44 0.0015 21.2 1.6 29 61-89 56-84 (90)
252 3u5c_Y RP50, 40S ribosomal pro 20.4 1.4E+02 0.0049 21.0 4.4 44 64-108 33-84 (135)
253 2xmw_A PACS-N, cation-transpor 20.4 1.2E+02 0.0041 16.6 4.5 56 55-114 5-64 (71)
254 2v94_A RPS24, 30S ribosomal pr 20.3 93 0.0032 21.0 3.2 44 64-108 37-88 (107)
255 1i4w_A Mitochondrial replicati 20.1 57 0.002 26.5 2.5 52 55-120 143-203 (353)
256 1osd_A MERP, hypothetical prot 20.1 1.2E+02 0.0042 16.6 5.6 57 55-115 5-66 (72)
257 3iwl_A Copper transport protei 20.1 1.2E+02 0.0042 17.2 3.5 55 55-115 4-60 (68)
No 1
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3.5e-23 Score=144.24 Aligned_cols=79 Identities=59% Similarity=0.998 Sum_probs=75.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRG 133 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~g 133 (152)
.+|||+|||+++||+||++||+++++++|+|++++ ++++|||||+|+++++|++||+++++.|++|.|+|+.+++.+.+
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~~~ 95 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTS 95 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCCCC
Confidence 79999999999999999999999998899999998 99999999999999999999999999999999999999888743
No 2
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=141.53 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||++||++|.|+.|+|++|+ |+++|||||+|.++++|++||+++++.|++|+|+|+.+...+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCccc
Confidence 379999999999999999999999988899999998 999999999999999999999999999999999999987654
No 3
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9e-21 Score=131.73 Aligned_cols=79 Identities=41% Similarity=0.622 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-E-EEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-Y-VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~-v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||++||++++.+ . |.|+.+. ++++|||||+|.++++|++||+++++.|++|.|+|..+++.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence 3799999999999999999999999755 4 8888888 99999999999999999999999999999999999999877
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
+.
T Consensus 95 ~~ 96 (104)
T 1wg5_A 95 EV 96 (104)
T ss_dssp TS
T ss_pred HH
Confidence 64
No 4
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.85 E-value=5e-22 Score=144.20 Aligned_cols=76 Identities=41% Similarity=0.631 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~--~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||+||++||++|+|+ .|.|++|+ |+++|||||+|.++++|++||++++..|++|+|+|+++++.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 789999999999999999999999988 89999998 99999999999999999999999999999999999998654
No 5
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.85 E-value=3.1e-22 Score=147.44 Aligned_cols=78 Identities=63% Similarity=1.017 Sum_probs=74.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++||+||++||++|++++|+|++|+ ++++|||||+|+++++|++||+++++.|++|+|+|+.+++++.
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 78999999999999999999999998899999998 9999999999999999999998899999999999999988774
No 6
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=8.4e-22 Score=140.25 Aligned_cols=78 Identities=36% Similarity=0.584 Sum_probs=72.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc----eEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~----~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||++||+.|+. ..|+|+.++ ++++|||||+|.++++|++||+++++.|++|.|+|..+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 379999999999999999999999964 699999998 999999999999999999999999999999999999987
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
..+
T Consensus 97 ~~~ 99 (118)
T 2db1_A 97 RTE 99 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 7
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-22 Score=142.68 Aligned_cols=77 Identities=38% Similarity=0.606 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-----eEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-----VYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-----~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
.+|||+||||++|++||++||++++. ..|+|+.++ |+++|||||+|.++++|++||+++++.|++|+|+|++++
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 103 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECC
Confidence 79999999999999999999999863 489999988 999999999999999999999999999999999999987
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+.+
T Consensus 104 ~~e 106 (123)
T 2dha_A 104 AAE 106 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=126.69 Aligned_cols=78 Identities=38% Similarity=0.683 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.+.|+.|.|+.+. ++++|+|||+|.++++|++||+.++..|++|.|+|..+.+++.
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSCCC
T ss_pred cEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcCCC
Confidence 79999999999999999999999988899999988 9999999999999999999999999999999999999987764
No 9
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.84 E-value=4.8e-21 Score=140.49 Aligned_cols=77 Identities=36% Similarity=0.615 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc----eEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~----~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|++||++||++++. ..|+|++|+ |+++|||||+|.++++|++||++++..|++|.|+|..+.+
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECCh
Confidence 79999999999999999999999964 589999998 9999999999999999999999999999999999999865
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 125 ~e 126 (136)
T 2hgl_A 125 TE 126 (136)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.9e-19 Score=124.24 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++|..|.|+.++ ++++|||||+|.++++|++||+.++..|.++.|.|..+.....
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 79999999999999999999999998899999987 8999999999999999999997799999999999999877663
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=127.55 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|++||+++|++++ |..|.|++|+ ++++|+|||+|.++++|++||+. ++..|.+|.|.|..+++
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999999999996 6699999987 99999999999999999999985 99999999999998865
No 12
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=131.00 Aligned_cols=78 Identities=22% Similarity=0.448 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc----eEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP----VYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~----~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||++||+.|++ ..|+|+.++ |+++|||||+|.+.++|++||++++..|++|.|+|..+.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 379999999999999999999999854 689999998 999999999999999999999999999999999999987
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+.+
T Consensus 91 ~~~ 93 (107)
T 2lmi_A 91 NED 93 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 13
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=124.04 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=74.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC-----eEEEEEe
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH-----RYIELFL 126 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~-----R~I~V~~ 126 (152)
.++|||+|||+++|++||+++|++++ |+.|.|+.+ |||||+|.+.++|++||+. ++..|.+ +.|+|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 37999999999999999999999995 668999876 8999999999999999995 9999998 9999999
Q ss_pred ccCCCCCCCCCCCCCCCC
Q psy3068 127 NSSSPRGGVGGSGFSRSE 144 (152)
Q Consensus 127 ~~~~~~gg~~g~~r~R~~ 144 (152)
+.++.....+++.|++++
T Consensus 90 a~~~~~~~~rsrsr~~~r 107 (108)
T 1x4c_A 90 DGPRSPSYGRSRSSGPSS 107 (108)
T ss_dssp SSCCSCCCCCSSCCCCSC
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 988876655555555543
No 14
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=130.19 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~--~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||++||+.|+++ .|+|+.++ ++++|||||+|.++++|++||+.++..|.+|.|.|..+.+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 799999999999999999999999765 49999998 999999999999999999999999999999999999886654
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=121.02 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..|.++.|+|..+.+++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 7899999999999999999999996 6699999998 99999999999999999999975 9999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 98 ~ 98 (100)
T 2do4_A 98 S 98 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=120.12 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.++++|++||+ .++..|.++.|+|..+.++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 7999999999999999999999995 6699999986 9999999999999999999999 4999999999999999877
Q ss_pred CCC
Q psy3068 131 PRG 133 (152)
Q Consensus 131 ~~g 133 (152)
..+
T Consensus 86 ~~~ 88 (95)
T 2dnz_A 86 LDG 88 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=127.68 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC--ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~--~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++||+||+++|++++ |..|+|++|+ ++++|||||+|.++++|++||+. ++..+++|.|.|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999986 5689999987 99999999999999999999985 4567999999999887
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+++
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=123.01 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++|..|.|+.++ ++++|||||+|.+.++|++||..++..|.++.|.|..+..+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCC
Confidence 79999999999999999999999997799999886 789999999999999999999769999999999999998776
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 96 ~ 96 (104)
T 1wi8_A 96 D 96 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.2e-19 Score=120.58 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=72.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..|.++.|.|..+.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 37999999999999999999999995 6699999986 9999999999999999999999 499999999999999887
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 95 ~~~ 97 (103)
T 2cq0_A 95 STN 97 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 20
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-19 Score=120.07 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.+ +.|.|+.++ ++++|+|||+|.++++|++||+. ++..|.++.|.|..+.++.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 799999999999999999999976 577887775 89999999999999999999994 9999999999999998877
Q ss_pred CC
Q psy3068 132 RG 133 (152)
Q Consensus 132 ~g 133 (152)
.+
T Consensus 94 ~~ 95 (102)
T 2fc8_A 94 EG 95 (102)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-19 Score=120.19 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=73.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..|.++.|.|..+.++
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 37999999999999999999999995 6699999986 89999999999999999999999999999999999998776
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 90 ~~ 91 (99)
T 2dgs_A 90 DS 91 (99)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=125.67 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCC----ccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRT----NIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~----~l~~R~I~V 124 (152)
.+|||+|||+++|+++|+++|++++ +.+|+|++|+ ++++|||||+|.++++|++||+. ++. .|++|.|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 6999999999999999999999996 4589999997 99999999999999999999996 554 589999999
Q ss_pred EeccC
Q psy3068 125 FLNSS 129 (152)
Q Consensus 125 ~~~~~ 129 (152)
..+..
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98764
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=124.91 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+..+.
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 7999999999999999999999996 6699999998 99999999999999999999985 9999999999999987665
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=127.30 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=76.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|+|..+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 37999999999999999999999995 6699999986 89999999999999999999995 99999999999999877
Q ss_pred CCCCCCCCCCCCCC
Q psy3068 130 SPRGGVGGSGFSRS 143 (152)
Q Consensus 130 ~~~gg~~g~~r~R~ 143 (152)
......+++..+++
T Consensus 122 ~~~~~~~~~~~g~g 135 (139)
T 1u6f_A 122 GHQRPGIAGAVGDG 135 (139)
T ss_dssp CCCCCCSSCCCCCC
T ss_pred CCCCCCCCCCCCCC
Confidence 66433333333333
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=124.66 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|+++|+++|+.++ |.+|.|++|+ ++++|||||+|++.++|++||+. |+..|.+|.|.|..+...
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 7999999999999999999999996 6699999987 99999999999999999999985 999999999999988654
No 26
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=127.53 Aligned_cols=78 Identities=27% Similarity=0.504 Sum_probs=68.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-E-EEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-Y-VDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~-v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||++||+.|+.+ . +.|..+. ++++|||||+|.+.++|++||++++..|++|.|+|..+.+.
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 3799999999999999999999999754 5 3444444 99999999999999999999999999999999999988654
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 105 ~ 105 (124)
T 1wel_A 105 G 105 (124)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=7e-19 Score=117.58 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|+++|+++|++++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..|.++.|.|..+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 37999999999999999999999995 5699999886 99999999999999999999999999999999999764
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.38 Aligned_cols=79 Identities=24% Similarity=0.236 Sum_probs=73.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 37999999999999999999999996 6699999986 99999999999999999999995 99999999999999977
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
.+.
T Consensus 95 ~~~ 97 (105)
T 1x5u_A 95 HNK 97 (105)
T ss_dssp TSC
T ss_pred CCc
Confidence 764
No 29
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=122.18 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|||||+|.++++|++||+.++..|.++.|.|..+.+..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCC
Confidence 7999999999999999999999995 6699999986 899999999999999999999999999999999999987765
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 97 ~ 97 (105)
T 2dh8_A 97 M 97 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=119.54 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEE-EEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYV-DINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v-~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|++||+++|+.++ |..| .|+.++ ++++|+|||+|.++++|++||+ .++..|.++.|.|..+.+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 7999999999999999999999996 5588 999985 9999999999999999999999 599999999999999987
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
.+.
T Consensus 86 ~~~ 88 (96)
T 1x5t_A 86 KDS 88 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 31
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=122.92 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|+++|+++|..|+ |+.|.|+.++ ++++|||||+|.+.++|++||+.++..|.++.|.|..+.+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 37999999999999999999999995 6699999986 99999999999999999999999999999999999999877
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 107 ~~ 108 (116)
T 1x4b_A 107 EE 108 (116)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=120.94 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce---------EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV---------YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~---------~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
..+|||+|||+++|+++|+++|+.++.+ .|.|..++ ++++|||||+|.++++|++||+. ++..|.++.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 3799999999999999999999999755 49999985 99999999999999999999995 999999999
Q ss_pred EEEEeccCCCC
Q psy3068 122 IELFLNSSSPR 132 (152)
Q Consensus 122 I~V~~~~~~~~ 132 (152)
|.|..+.....
T Consensus 95 l~V~~a~~~~~ 105 (113)
T 2cpe_A 95 LKVSLARKKPP 105 (113)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999887764
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.2e-19 Score=122.67 Aligned_cols=77 Identities=9% Similarity=0.111 Sum_probs=66.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++|++||+++|+.++ +.+|.|+.++ |+++|||||+|.+.++|++||+ .++..+.+|.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999998 5699999986 9999999999999999999997 59999999999999887
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=6.8e-19 Score=124.34 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.|+ |..|+|+.+++.++|||||+|.++++|++||+. ++..|.+|.|.|..+....
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 6899999999999999999999996 569999999877899999999999999999985 9999999999999886654
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=3.8e-18 Score=119.79 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|||||+|.+.++|++||+. ++..|.++.|+|..+.+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 37999999999999999999999995 6699999986 99999999999999999999975 99999999999999877
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 105 ~~~ 107 (115)
T 2cpz_A 105 KND 107 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 653
No 36
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=5.9e-19 Score=125.61 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 37999999999999999999999996 6689999886 99999999999999999999984 99999999999998865
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 102 ~~ 103 (126)
T 3ex7_B 102 RG 103 (126)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 37
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-19 Score=123.08 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=69.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
.+|||+|||+++|+++|+++|++++ |..|.|+.++ ++++|||||+|.++++|++||+.++..+.++.|.|..+
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 7999999999999999999999996 5699999998 99999999999999999999999999999999999754
No 38
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=119.91 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=72.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCC-CC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCc-cCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSP-VV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTN-IRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~-~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~-l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||+++|+. ++ |..|.|+.++ ++++|||||+|.+.++|++||+. ++.. |.++.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 379999999999999999999999 96 6799999998 99999999999999999999995 8888 999999999987
Q ss_pred CCCC
Q psy3068 129 SSPR 132 (152)
Q Consensus 129 ~~~~ 132 (152)
+...
T Consensus 89 ~~~~ 92 (104)
T 2dhg_A 89 PKAS 92 (104)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6653
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=119.69 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.++++|++||+ .++..|.++.|.|..+...
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 7999999999999999999999996 6689999886 8999999999999999999999 4999999999999998776
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 94 ~~ 95 (103)
T 2dnm_A 94 RR 95 (103)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=116.04 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~ 127 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.++++|++||+ .++..|.++.|+|..+
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 7899999999999999999999996 5699999986 8999999999999999999997 5999999999999876
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.1e-18 Score=117.34 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|..++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+....
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 7899999999999999999999995 6699999998 99999999999999999999994 9999999999999987654
No 42
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=118.31 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|..++.+ .+.|+.++ ++++|+|||+|.++++|++||+. ++..|.++.|+|..+..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 3799999999999999999999999754 56666665 89999999999999999999965 89999999999999875
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
+.
T Consensus 95 ~~ 96 (98)
T 2cqp_A 95 PS 96 (98)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 43
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.1e-18 Score=116.80 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||..++..+.++.|.|..+.+..
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTTS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCCC
Confidence 6899999999999999999999995 6699999886 999999999999999999999769999999999999987654
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.5e-18 Score=115.68 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.+.++++|+|||+|.+.++|++||+. ++..|.++.|.|..+.+...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 7999999999999999999999995 668999887789999999999999999999995 99999999999999877664
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-18 Score=119.04 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++ |+.|.|+.++ ++++|||||+|.+.++|++||+.....|.++.|.|..+...
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 96 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccC
Confidence 37999999999999999999999995 6699999986 99999999999999999999997444899999999998654
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.2e-18 Score=113.85 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
++|+|+|||+++|++||+++|+.++ +..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.++.|.|..+.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999999996 5689999885 99999999999999999999995 999999999999998765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=116.07 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ +..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.++.|.|..+.++
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 7999999999999999999999996 6699999985 99999999999999999999995 999999999999988654
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=118.52 Aligned_cols=78 Identities=24% Similarity=0.261 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.++++|++||+. ++..|.++.|+|..+.+.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 7999999999999999999999995 6699999986 89999999999999999999965 999999999999998776
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 93 ~~ 94 (102)
T 1x5s_A 93 SD 94 (102)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=116.76 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..|.++.|.|..+.+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 7999999999999999999999996 5689999987 9999999999999999999996 5999999999999999877
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 89 ~~ 90 (99)
T 1whw_A 89 KE 90 (99)
T ss_dssp ST
T ss_pred cc
Confidence 64
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=116.04 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=70.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ |..|.|..++ ++++|+|||+|.++++|++||+. ++..+.++.|.|..++.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 47999999999999999999999996 6699999887 89999999999999999999995 99999999999988753
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=4.6e-18 Score=117.24 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCC---eEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRH---RYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~---R~I~V~~~ 127 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..+.+ +.|.|..+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 37999999999999999999999995 6699999998 99999999999999999999985 8888887 99999998
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.....
T Consensus 95 ~~~~~ 99 (105)
T 2dnh_A 95 DTDKE 99 (105)
T ss_dssp CSSCC
T ss_pred ccCcc
Confidence 77663
No 52
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=6.5e-19 Score=119.39 Aligned_cols=75 Identities=28% Similarity=0.389 Sum_probs=67.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||+++|++++.+ .+.|+.++ ++++|+|||+|.++++|++||+. ++..|.+|.|+|..++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3799999999999999999999999654 57777765 89999999999999999999985 9999999999998875
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-18 Score=117.15 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++ |..|.|..+ ++++|+|||+|.+.++|++||+ .++..|.++.|.|..+....
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 37999999999999999999999996 558888554 5689999999999999999996 49999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 101 ~ 101 (109)
T 1x4a_A 101 G 101 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.8e-18 Score=126.57 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.|+ |+.|.|+.++ ++++|||||+|.++++|++||+. ++..|.++.|.|..+..
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 37999999999999999999999995 6699999987 89999999999999999999995 99999999999999876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 119 ~~ 120 (156)
T 1h2v_Z 119 FK 120 (156)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=114.99 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|+++|+++|+.++ |..|.|..++..++|+|||+|.+.++|++||+. ++..|.++.|.|..+.....
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 7999999999999999999999995 669999998855899999999999999999985 99999999999999877663
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=118.26 Aligned_cols=78 Identities=23% Similarity=0.244 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+.+.
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 7899999999999999999999995 6699999986 89999999999999999999975 999999999999998777
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 93 ~~ 94 (102)
T 2cqb_A 93 RI 94 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 57
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-18 Score=115.70 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|+|||+|.+.++|++||+ +++.|.++.|.|..+...+
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCC
Confidence 7899999999999999999999996 6699999986 9999999999999999999999 4788999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 95 ~ 95 (103)
T 2cqg_A 95 S 95 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 58
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=116.61 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVY--------VDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRY 121 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~--------v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~ 121 (152)
..+|+|+|||+++|++||+++|+.++ +.. |.|+.++ ++++|+|||+|.+.++|++||+ .++..+.++.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 48999999999999999999999996 447 9999986 9999999999999999999998 4999999999
Q ss_pred EEEEecc
Q psy3068 122 IELFLNS 128 (152)
Q Consensus 122 I~V~~~~ 128 (152)
|+|..++
T Consensus 93 l~V~~A~ 99 (99)
T 2la6_A 93 IKVSFAT 99 (99)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9998763
No 59
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.4e-17 Score=116.74 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=72.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|+|||+|.++++|++||+. ++..|.++.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 38999999999999999999999995 6699999985 99999999999999999999985 99999999999999877
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 95 ~~~ 97 (115)
T 2dgo_A 95 KPP 97 (115)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=116.93 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.++++|++||+ .++..|.++.|.|..++
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 37999999999999999999999995 5699999998 9999999999999999999999 59999999999998865
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.4e-18 Score=115.16 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..+.++++|+|||+|.+.++|++||+. ++..+.++.|.|..+.+..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 7999999999999999999999996 668998886699999999999999999999995 9999999999999987765
No 62
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-18 Score=116.93 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-C------CCccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-D------RTNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~------~~~l~~R~I~V 124 (152)
.+|||+|||+++|+++|+++|..++ |..|.|+.++ ++++|||||+|.+.++|++||+. + +..|.++.|.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 7999999999999999999999996 6699999986 89999999999999999999995 7 89999999999
Q ss_pred EeccCCCC
Q psy3068 125 FLNSSSPR 132 (152)
Q Consensus 125 ~~~~~~~~ 132 (152)
..+.+...
T Consensus 96 ~~a~~~~~ 103 (111)
T 1x4h_A 96 DLAVTRDE 103 (111)
T ss_dssp ECCCCCCC
T ss_pred EECCCCcc
Confidence 99877653
No 63
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=115.84 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|++++.+ .|+.+. ++++|+|||+|.++++|++||+ .++..|.++.|.|..+.++..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v--~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFI--KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEE--ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEE--EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 799999999999999999999998754 666666 9999999999999999999999 599999999999999977763
No 64
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=119.92 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++|..|.|..++ ++++|||||+|.+.++|++||+.++..|.++.|.|..+...
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCC
Confidence 479999999999999999999999997799998874 89999999999999999999977999999999999988765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 99 ~ 99 (100)
T 2j76_E 99 Q 99 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3.2e-18 Score=121.47 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..|.++.|.|..+....
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 7999999999999999999999996 5689999985 999999999999999999999779999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 117 ~ 117 (124)
T 2jwn_A 117 P 117 (124)
T ss_dssp S
T ss_pred C
Confidence 4
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=3.6e-18 Score=116.36 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..+.++.|.|..+..+
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 7999999999999999999999996 6699999986 89999999999999999999975 999999999999998765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 83 ~ 83 (96)
T 2x1f_A 83 D 83 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.4e-18 Score=113.44 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..+|+|+|||+++|+++|+++|++++ +..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.++.|+|..+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 37999999999999999999999996 6699998885 89999999999999999999975 999999999999876
No 68
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.2e-18 Score=113.47 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
+|+|+|||+++|++||+++|++++ +..|.|+.++ ++++|+|||+|.++++|++||+.++..+.++.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999996 5599999886 99999999999999999999999999999999998754
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=114.89 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEecc-C--CCcceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYK-N--GRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d-~--g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.+ + ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 37999999999999999999999996 669999988 4 99999999999999999999996 799999999999998
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.....
T Consensus 95 ~~~~~ 99 (107)
T 2cph_A 95 DSEVT 99 (107)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77663
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=6.4e-18 Score=116.89 Aligned_cols=75 Identities=27% Similarity=0.442 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|+|..+.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 37999999999999999999999996 5699999998 99999999999999999999995 9999999999998764
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=117.89 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=71.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..+.++.|.|..+.+
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 48999999999999999999999996 5699999886 8999999999999999999998 499999999999998876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
+.
T Consensus 106 k~ 107 (108)
T 2jrs_A 106 RT 107 (108)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.3e-18 Score=118.80 Aligned_cols=78 Identities=12% Similarity=0.193 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|+++|+++|+.|+ |..|.|+.++ ++++|||||+|.+.++|++||+..+..|.++.|.|..+...
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPR 104 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCC
Confidence 37999999999999999999999996 5699999986 99999999999999999999999889999999999988765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 105 ~ 105 (109)
T 2rs2_A 105 R 105 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=113.41 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++..++|+|||+|.+.++|++||+ .++..|.++.|.|..+..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 37999999999999999999999996 56899999985579999999999999999999 59999999999999987765
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=7.2e-18 Score=116.46 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCcc---CCeEEEEEe
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNI---RHRYIELFL 126 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l---~~R~I~V~~ 126 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..+ .++.|.|..
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 37999999999999999999999995 6699999986 8999999999999999999998 488777 889999999
Q ss_pred ccCCCC
Q psy3068 127 NSSSPR 132 (152)
Q Consensus 127 ~~~~~~ 132 (152)
+.....
T Consensus 93 a~~~~~ 98 (106)
T 2dgp_A 93 ADSESR 98 (106)
T ss_dssp CCCCSC
T ss_pred CCcccc
Confidence 877663
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=6.9e-18 Score=121.91 Aligned_cols=78 Identities=26% Similarity=0.353 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.++ |+.|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+.+
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 37999999999999999999999996 6699999986 89999999999999999999995 99999999999998876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 126 ~~ 127 (129)
T 2kxn_B 126 KR 127 (129)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=116.19 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 37999999999999999999999996 5699999886 89999999999999999999995 99999999999998866
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 103 ~~ 104 (106)
T 1p27_B 103 RG 104 (106)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 77
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=4.3e-18 Score=120.33 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE-----EEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY-----IELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~-----I~V~~~ 127 (152)
++|||.|||+++|++||+++|++++ |+.|.|+.+ |||||+|+++++|++||+. |+..|.++. |+|..+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 7899999999999999999999995 668998876 9999999999999999994 999999987 888888
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.+...
T Consensus 92 ~~~~~ 96 (115)
T 3beg_B 92 GPRSP 96 (115)
T ss_dssp C----
T ss_pred CCCCC
Confidence 77654
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=113.89 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC---C--CcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN---G--RPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~---g--~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
.+|||+|||+++|+++|+++|+.++ |..|.|..++ | +++|+|||+|.+.++|++||+. ++..|.++.|.|..+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 7899999999999999999999996 5688888764 3 8899999999999999999995 999999999999998
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.....
T Consensus 86 ~~~~~ 90 (98)
T 2cpf_A 86 ERATK 90 (98)
T ss_dssp SCSSC
T ss_pred cCCCC
Confidence 77653
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=5.2e-18 Score=126.52 Aligned_cols=75 Identities=9% Similarity=0.203 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++|++||+++|+.|+ |+.|.|+.|+ |+++|||||+|.+.++|++||+. ++..|.+|.|.|..+.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 6999999999999999999999998 6699999996 99999999999999999999998 9999999999999885
Q ss_pred C
Q psy3068 129 S 129 (152)
Q Consensus 129 ~ 129 (152)
+
T Consensus 136 ~ 136 (156)
T 3n9u_C 136 R 136 (156)
T ss_dssp H
T ss_pred C
Confidence 4
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=114.69 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE----EEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY----IELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~----I~V~ 125 (152)
.+|||+|||+++|++||+++|++++ ++ .|.|+.++ ++++|+|||+|.++++|++||+. ++..|.++. |+|.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~ 89 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLN 89 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEe
Confidence 7999999999999999999999995 67 99999986 89999999999999999999995 999999999 9998
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
.+....
T Consensus 90 ~a~~~~ 95 (99)
T 2div_A 90 YATYSG 95 (99)
T ss_dssp ETTCCS
T ss_pred ecCCCC
Confidence 887654
No 81
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=8.8e-18 Score=111.91 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN---GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|++||+++|+.++ +..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.++.|.|..+.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 6899999999999999999999996 5689998886 34899999999999999999995 99999999999999876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
+.
T Consensus 85 ~~ 86 (88)
T 4a8x_A 85 PW 86 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=8.5e-18 Score=118.33 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=68.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+. ++..|.++.|+|..+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 48999999999999999999999996 6699999886 89999999999999999999995 999999999999875
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=9.4e-19 Score=113.76 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
+|||+|||+++|++||+++|++++ +..|.|+.++ ++++|+|||+|.++++|++||+.++..+.++.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999996 5599999886 89999999999999999999999999999999988764
No 84
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=118.31 Aligned_cols=76 Identities=25% Similarity=0.216 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|||||+|.+.++|++||..++..|.++.|.|..+...
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 7999999999999999999999995 6699999987 89999999999999999999977999999999999987654
No 85
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=115.54 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHH---cccCCCC-ceEEEEeccC--C---CcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIV---DFFSPVV-PVYVDINYKN--G---RPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~---e~F~~~~-~~~v~i~~d~--g---~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
.+|||+|||+++|++||+ ++|++++ |..|.|+.+. + +++|+|||+|.++++|++||+. ++..|.+|.|.|
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 95 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence 689999999999999999 9999996 6699998876 2 6679999999999999999996 999999999999
Q ss_pred EeccCCCC
Q psy3068 125 FLNSSSPR 132 (152)
Q Consensus 125 ~~~~~~~~ 132 (152)
..+.+...
T Consensus 96 ~~a~~k~~ 103 (111)
T 2cpi_A 96 SLGTTKYC 103 (111)
T ss_dssp ESCCCCSC
T ss_pred Eecccccc
Confidence 99887763
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.8e-18 Score=112.61 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~ 126 (152)
.+|+|+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.++.|+|..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 7999999999999999999999996 6699999986 99999999999999999999994 99999999887654
No 87
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.3e-17 Score=116.04 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=71.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..|.++.|.|..+..
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 37999999999999999999999996 5699999886 9999999999999999999999 499999999999998876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 106 ~~ 107 (110)
T 1oo0_B 106 KG 107 (110)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.2e-16 Score=113.54 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+ .++..+.++.|.|..+...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 37999999999999999999999995 6699999998 9999999999999999999999 5999999999999988665
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 115 ~ 115 (124)
T 2kt5_A 115 I 115 (124)
T ss_dssp T
T ss_pred C
Confidence 4
No 89
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=2.8e-18 Score=118.39 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=70.2
Q ss_pred ccEEEEcCCCC------CCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCC-eEE
Q psy3068 54 HHTVHMRGLPF------RVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRH-RYI 122 (152)
Q Consensus 54 ~~~v~v~nLp~------~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~-R~I 122 (152)
+.+|||+|||+ ++++++|+++|++++ |.+|.|+.++ ++++|||||+|.++++|++||+ .++..+.+ |.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 37999999999 999999999999996 6699999987 9999999999999999999998 49999998 999
Q ss_pred EEEeccC
Q psy3068 123 ELFLNSS 129 (152)
Q Consensus 123 ~V~~~~~ 129 (152)
.|..+.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9998754
No 90
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=6e-18 Score=120.00 Aligned_cols=76 Identities=17% Similarity=0.310 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC--ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~--~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|++++ |..|.|..+ +++|||||+|.++++|++||+. |+..|.+|.|+|..+..+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999997 457777543 6889999999999999999985 999999999999998655
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.7e-17 Score=123.74 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=72.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.|+ |..|.|+.++ ++++|||||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 37999999999999999999999996 5699999986 99999999999999999999985 99999999999999877
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 152 ~~~ 154 (165)
T 1rk8_A 152 KGP 154 (165)
T ss_dssp CC-
T ss_pred CCC
Confidence 664
No 92
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=114.74 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|+++|+++|+.++ |..|.|..++ ++++|+|||+|.+.++|++||+ .++..+.++.|.|..+...
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 7899999999999999999999995 6699999886 9999999999999999999998 5999999999999998776
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 89 ~ 89 (104)
T 1p1t_A 89 K 89 (104)
T ss_dssp T
T ss_pred c
Confidence 5
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=110.12 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
+|+|+|||+++|++||+++|++++ +..|.|+.++ ++++|+|||+|.++++|++||+.....+.++.|.|..+
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 699999999999999999999996 5689999986 89999999999999999999998559999999998765
No 94
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=115.88 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=70.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|..++++++|+|||+|.+.++|++||+. ++..+.++.|.|..+.++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 37999999999999999999999996 669999998866999999999999999999995 999999999999988664
No 95
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=2.6e-17 Score=123.33 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|+|+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..|.++.|.|..+.+..
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC---
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChh
Confidence 7999999999999999999999996 6689999986 899999999999999999999999999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 185 ~ 185 (196)
T 1l3k_A 185 E 185 (196)
T ss_dssp -
T ss_pred H
Confidence 3
No 96
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-16 Score=110.14 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=69.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCcc--------CCeEE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNI--------RHRYI 122 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l--------~~R~I 122 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..| .++.|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 37999999999999999999999995 6799999998 99999999999999999999994 88888 57779
Q ss_pred EEEeccCC
Q psy3068 123 ELFLNSSS 130 (152)
Q Consensus 123 ~V~~~~~~ 130 (152)
.|..+.++
T Consensus 105 ~v~~a~p~ 112 (114)
T 1x5o_A 105 LCKFSGPS 112 (114)
T ss_dssp EEEECCCS
T ss_pred eEEccCCC
Confidence 99887744
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=117.55 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~ 127 (152)
.+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.++++|++||+ .++..|.++.|+|..+
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 7999999999999999999999995 6699999986 8999999999999999999997 4999999999999764
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.1e-17 Score=131.63 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC---ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV---PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~---~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++|++||+++|+.|+ |++|.|++|+ ++++|||||+|.+.++|++||+. ++..|.+|.|+|..+.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 6899999999999999999999998 6799999996 99999999999999999999995 9999999999999764
No 99
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=111.69 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=67.6
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++.+.+.|+.+ +++|||||+|.+.++|++||+. ++..|.++.|.|..+.++.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 37999999999999999999999997655666654 7889999999999999999975 9999999999999987764
No 100
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=111.80 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHH----cccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIV----DFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~----e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++|++||+ ++|++++ |..|.|+.++.. +|||||+|.++++|++||+ .++..|.+|.|+|..+.
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 799999999999999999 9999996 669999999822 8999999999999999999 59999999999999986
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+..
T Consensus 89 ~~~ 91 (96)
T 2dgx_A 89 GAS 91 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-17 Score=111.90 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|++|+ |++|.|+.+ +|+|||+|++.++|++||+. ++..+.+|.|.|..+..+
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 7999999999999999999999996 568888865 79999999999999999984 577899999999998766
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 92 ~ 92 (101)
T 2cq1_A 92 E 92 (101)
T ss_dssp S
T ss_pred c
Confidence 5
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=109.17 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccC--CeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIR--HRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~--~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..+ +|+|||+|.+.++|++||+. ++..|. ++.|.|..+.++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 7899999999999999999999996 568888754 78999999999999999995 999999 999999998876
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 103
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.2e-19 Score=123.28 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc-eE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP-VY--------VDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~-~~--------v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
..+|||+|||+++|++||+++|+.++. .. |.|+.++ ++++|||||+|.+.++|++||+. ++..|.++.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 379999999999999999999999964 45 8898885 89999999999999999999995 999999999
Q ss_pred EEEEeccCCCC
Q psy3068 122 IELFLNSSSPR 132 (152)
Q Consensus 122 I~V~~~~~~~~ 132 (152)
|.|..+.+.+.
T Consensus 87 l~V~~a~~~~~ 97 (116)
T 2lcw_A 87 IKVSFATRRAD 97 (116)
Confidence 99999877764
No 104
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-18 Score=116.17 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=68.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++.+ . .++.+. ++++|||||+|.+.++|++||+.++..|.++.|.|..+..+
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCC
Confidence 3799999999999999999999999643 4 555554 89999999999999999999999999999999999998766
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
+
T Consensus 96 ~ 96 (101)
T 1fj7_A 96 D 96 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=117.97 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceE--EEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCC----ccCCeEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVY--VDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRT----NIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~--v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~----~l~~R~I~V 124 (152)
.+|||+|||+++|+++|+++|+.++ |.. |+|++|+ ++++|||||+|.+. +|++||+. ++. .|.+|.|.|
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 7999999999999999999999996 434 8999997 99999999999999 99999996 888 999999999
Q ss_pred EeccCCCC
Q psy3068 125 FLNSSSPR 132 (152)
Q Consensus 125 ~~~~~~~~ 132 (152)
..+.+..+
T Consensus 103 ~~a~~~~~ 110 (131)
T 2m2b_A 103 EFAKGSKR 110 (131)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99877654
No 106
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=5.1e-17 Score=119.52 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|++||+++|+.|+ |..|.|+.++ ++++|||||+|.+.++|++||+. ++..|.++.|+|..+.+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 37999999999999999999999996 5699999986 99999999999999999999985 99999999999999876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 150 ~~ 151 (158)
T 2kn4_A 150 GR 151 (158)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=111.90 Aligned_cols=75 Identities=25% Similarity=0.187 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++ |..|.|..+ ++|+|||+|.+.++|++||+. ++..+.++.|.|..+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 3799999999999999999999995 569999887 789999999999999999995 88999999999999987764
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=116.59 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++||+||+++|++|+ |++|.|+.+ ||||||+|++.++|++||+. ++..|.+|.|.|..+..
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 37999999999999999999999996 669999875 79999999999999999994 35789999999998876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
++
T Consensus 92 ~~ 93 (105)
T 1sjq_A 92 KE 93 (105)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 109
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.1e-17 Score=114.92 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=70.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ ++..|.++.|.|..+.+..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcCc
Confidence 37999999999999999999999996 5699999998 9999999999999999999999 9999999999998876544
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=113.29 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC--ceEEEEe-ccC--CCcceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEE
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV--PVYVDIN-YKN--GRPSGEADVYFATHEDAMQAMSK-D--RTNIRHRYIELF 125 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~--~~~v~i~-~d~--g~~~G~a~V~F~~~~dA~~Al~~-~--~~~l~~R~I~V~ 125 (152)
..+|||+|||+++|+++|+++|..++ |..|.|+ .++ ++++|||||+|.++++|++||+. + +..+.++.|.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 37999999999999999999999994 6799988 665 79999999999999999999996 4 589999999999
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
.+.+..
T Consensus 88 ~a~~~~ 93 (109)
T 2dis_A 88 WAEPEI 93 (109)
T ss_dssp ESCSSC
T ss_pred EcCCCC
Confidence 987655
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=3e-17 Score=119.30 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+...
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 7899999999999999999999996 6699999886 89999999999999999999985 999999999999998766
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 128 ~~ 129 (135)
T 2lea_A 128 RP 129 (135)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 112
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=106.35 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=65.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++ |..|.|. +|+|||+|.++++|++||+ .++..|.++.|.|..+....
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 37999999999999999999999996 5588876 6899999999999999997 49999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 82 ~ 82 (90)
T 2dnq_A 82 K 82 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.7e-17 Score=111.46 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ +..|.|..++ ++++|+|||+|.+.+ |++||+. ++..+.++.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4799999999999999999999995 6699999987 899999999999999 9999996 999999999999988765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 114
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=111.68 Aligned_cols=74 Identities=24% Similarity=0.170 Sum_probs=64.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCC--ccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRT--NIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~--~l~~R~I~V~~~~~ 129 (152)
+.+|+|+|||+++|++||+++|++|+ |.+|.|++ .||+|||+|++.++|++||+. ++. .+.+|.|.|..++.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 38999999999999999999999996 55888874 478999999999999999986 444 48999999999876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
++
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=108.95 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCC------CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCe-EEEE
Q psy3068 55 HTVHMRGLPFRV------NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHR-YIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~~~------te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R-~I~V 124 (152)
.+|||+|||+++ |+++|+++|++++ +..|.|+.+.++++|+|||+|.++++|++||+. ++..+.+| .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 7899999999996 558888844499999999999999999999995 99999999 8876
No 116
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=114.53 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-D--RTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~--~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++||+||+++|++|+ |++|.|+.+ +|||||+|++.++|++||+. + +..|.+|.|.|..+..
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 37999999999999999999999996 669999875 79999999999999999985 3 5689999999999877
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
++
T Consensus 107 k~ 108 (119)
T 2ad9_A 107 KE 108 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.2e-16 Score=119.79 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=71.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..|.++.|.|..+...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 47999999999999999999999996 5699999986 89999999999999999999999999999999999987655
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 93 ~ 93 (196)
T 1l3k_A 93 E 93 (196)
T ss_dssp -
T ss_pred c
Confidence 4
No 118
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=108.81 Aligned_cols=76 Identities=20% Similarity=0.426 Sum_probs=65.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++.+ .++...++++|+|||+|.+.++|++||+ .++..|.++.|.|..+.++.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v--~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEI--RLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEE--CCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcE--EEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3799999999999999999999998543 3232238999999999999999999999 49999999999999987665
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6e-16 Score=110.06 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=65.5
Q ss_pred ccEEEEcCCCCC-CCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFR-VNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~-~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||++ +|++||+++|++|+ |.+|.|. +++|||||+|++.++|++||+. +...|.+|.|.|..+.
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 489999999998 99999999999996 6699987 4579999999999999999984 5567999999999987
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
...
T Consensus 101 ~~~ 103 (112)
T 1x4f_A 101 KYK 103 (112)
T ss_dssp SCS
T ss_pred ccc
Confidence 654
No 120
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=111.28 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCC------CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCe-EEEE
Q psy3068 54 HHTVHMRGLPFRV------NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHR-YIEL 124 (152)
Q Consensus 54 ~~~v~v~nLp~~~------te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R-~I~V 124 (152)
..+|||+|||+++ |+++|+++|+.++ |..|.|+...|+++|||||+|.+.++|++||+. ++..|.+| .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 3799999999999 7899999999996 568888843499999999999999999999996 99999998 9999
Q ss_pred EeccCCC
Q psy3068 125 FLNSSSP 131 (152)
Q Consensus 125 ~~~~~~~ 131 (152)
..+...+
T Consensus 95 ~~a~~~~ 101 (105)
T 2nlw_A 95 NLFTDFD 101 (105)
T ss_dssp ECSCCCC
T ss_pred EEcchHh
Confidence 9876543
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=5.2e-16 Score=117.71 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.|+ |+.|.|+.++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 47999999999999999999999995 6699999998 99999999999999999999995 999999999999887543
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-16 Score=108.96 Aligned_cols=73 Identities=23% Similarity=0.174 Sum_probs=64.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh---CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK---DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~---~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|++|+ |.+|.|+.+ ||+|||+|++.++|++||+. +...|.++.|.|..+..+
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 7999999999999999999999996 568888754 79999999999999999984 445699999999998765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 5
No 123
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.4e-16 Score=107.03 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+++.+..|.|. +++|+|||+|.++++|++||+ .++..+.++.|+|..+...
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999999999966688874 778999999999999999999 4999999999999887554
No 124
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.2e-17 Score=113.64 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=67.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-c----eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-P----VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~----~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|+++|+++|+.++ | +.+.+. .++++|||||+|.+.++|++||+. ++..|.++.|.|..+
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 37999999999999999999999885 3 234433 478999999999999999999985 999999999999998
Q ss_pred cCCCC
Q psy3068 128 SSSPR 132 (152)
Q Consensus 128 ~~~~~ 132 (152)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 77664
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-16 Score=105.03 Aligned_cols=73 Identities=23% Similarity=0.199 Sum_probs=64.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCC--C-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPV--V-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~--~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.+ + |..|.+ ++|+|||+|.+.++|++||+ .++..|.++.|.|..+.+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3799999999999999999999999 5 446764 36899999999999999999 599999999999999877
Q ss_pred CCC
Q psy3068 130 SPR 132 (152)
Q Consensus 130 ~~~ 132 (152)
...
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 126
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.9e-16 Score=121.88 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++||++|+++|+.|+ |+.|+|++|+ ++++|+|||+|.+.++|++||+. ++..+.++.|+|..+...
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 7999999999999999999999996 6699999987 99999999999999999999986 999999999999887654
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 96 ~ 96 (213)
T 4f02_A 96 P 96 (213)
T ss_dssp T
T ss_pred c
Confidence 3
No 127
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=109.83 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=64.7
Q ss_pred cEEEEcCCCC-CCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-C--CCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPF-RVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-D--RTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~-~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~--~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+ ++|++||+++|++|+ |.+|.|+.+ +|||||+|+++++|++||+. + ...|.+|.|.|..+..
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 7999999999 999999999999996 669999865 58999999999999999985 3 4569999999999875
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=104.64 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=67.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++ |..|.|..+ +|+|||+|.+.++|++||+. ++..|.++.|.|..+.+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 37999999999999999999999995 668888854 78999999999999999975 9999999999999987766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=4.3e-16 Score=107.36 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++ |..|.|. +|+|||+|.++++|++||+. ++..|.++.|.|..+.+...
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 7899999999999999999999996 5688866 46999999999999999995 99999999999999877653
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.1e-16 Score=108.27 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=64.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..|+|+||++.+||++|+++|.++++ ++++|.. ++|||||+|.++++|++|++. |+..+.+|.|+|..++
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 68999999999999999999999975 5888875 689999999999999999996 9999999999998875
No 131
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=103.35 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=65.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++ |..|.|.+ ++|||+|.++++|++||+. ++..|.++.|.|..+....
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 37999999999999999999999996 56888773 4999999999999999985 9999999999999997766
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 132
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.4e-16 Score=116.49 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=71.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+.++..++++.|+|..+.++
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 6899999999999999999999996 6699999986 99999999999999999999999999999999999998765
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.8e-16 Score=107.13 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=65.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPF-RVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~-~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+ ++|++||+++|+.++ |..|.|. +|+|||+|.+.++|++||+. ++..+.++.|.|..+...
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 37999999999 999999999999996 5688874 78999999999999999995 999999999999988765
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 84 ~~ 85 (96)
T 2kvi_A 84 AR 85 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=4.5e-16 Score=108.94 Aligned_cols=76 Identities=18% Similarity=0.362 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.++ |..|.|+.+ +.++|+|||+|.+.++|++||+ .++..+.++.|.|..+.+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 37999999999999999999999996 568998876 4568999999999999999999 5999999999999987653
No 135
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=8.9e-16 Score=111.55 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ +..|.|..++ ++++|+|||+|.+.++|++||+. ++..++++.|.|..+.+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 37999999999999999999999996 5699999885 99999999999999999999994 99999999999988753
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=6.5e-16 Score=131.95 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|+++|++||..|+ |+.|.|+.++ ++++|||||+|.+.++|++||+. ++..|.++.|.|..+...
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 6999999999999999999999996 6699999986 99999999999999999999975 999999999999998764
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 183 ~ 183 (437)
T 3pgw_S 183 T 183 (437)
T ss_pred C
Confidence 3
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=6.7e-16 Score=112.29 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=70.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|+|||+++|++||+++|+.++ +..|.|..++ ++++|+|||+|.++++|++||+ .++..+.++.|.|..+.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 6899999999999999999999996 5589999886 9999999999999999999998 4999999999999988765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 83 ~ 83 (167)
T 1fxl_A 83 S 83 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 138
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=8.3e-16 Score=116.73 Aligned_cols=77 Identities=12% Similarity=0.223 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|+|||+++|++||+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..|+++.|.|..+..+
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 7999999999999999999999996 6699999986 89999999999999999999995 999999999999998776
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 206 ~ 206 (216)
T 2qfj_A 206 P 206 (216)
T ss_dssp S
T ss_pred C
Confidence 5
No 139
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.6e-16 Score=106.32 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=63.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-e-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CC-CccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-V-YVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR-TNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~-~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|++++. + .+.| .++|+|||+|.++++|++||+. ++ ..|.++.|.|..+.+.
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 78999999999999999999999964 4 3333 3579999999999999999984 88 8999999999998776
Q ss_pred CC
Q psy3068 131 PR 132 (152)
Q Consensus 131 ~~ 132 (152)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 140
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-16 Score=106.82 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=65.5
Q ss_pred CccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 53 ~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
...+|||+|||+++|+++|+++|+.++ |..|.|. +++|+|||+|.+.++|++||+. ++..+.++.|.|..+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 347999999999999999999999996 5688887 5689999999999999999975 99999999999987754
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=103.42 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++ |..|.|. +++|||+|.+.++|++||+. ++..+.++.|.|..+.+...
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 7899999999999999999999996 5688877 34999999999999999995 99999999999999877653
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=107.95 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 52 ~~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
+...+|||+|||+++|+++|+++|+.++ |..|.|..+ +|+|||+|.+.++|++||+. ++..|.++.|.|..+..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 3348999999999999999999999996 668998876 78999999999999999975 99999999999999877
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 99 ~~ 100 (109)
T 1x4g_A 99 SP 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.1e-16 Score=107.24 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCCCCHHHHH----cccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIV----DFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~----e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|++||+ ++|+.++ +..|.|... ++++|+|||+|.+.++|++||+. ++..+.++.|.|..+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3799999999999999999 9999996 557877632 77889999999999999999985 999999999999988
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
.+..
T Consensus 87 ~~~~ 90 (97)
T 1nu4_A 87 KTDS 90 (97)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7654
No 144
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=8e-16 Score=118.06 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=68.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
.+|||+|||+++|+++|+++|++++ |..|.|+++. ++++|+|||+|+++++|++||+..+..+.+|.|.|....
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 6899999999999999999999996 5699999988 999999999999999999999987789999999998653
No 145
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=5.8e-16 Score=104.86 Aligned_cols=74 Identities=16% Similarity=0.044 Sum_probs=60.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.++|||+|||+++||+||+++|++++ |.+|.|+.+ ++|||||+|+++++|+++. .....+.++.|.|..+.++.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcCCCC
Confidence 37999999999999999999999996 669998874 7899999999999999543 23344679999999887654
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=101.90 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=63.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh--CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~~R~I~V~~~ 127 (152)
..+|+|+|||+++|+++|+++|++++ +..|.|.. ++|+|||+|.+.++|++||+. ++..+.++.|.|..+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 37999999999999999999999996 56888885 479999999999999999994 889999999999875
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.2e-16 Score=112.37 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|+|+|||+++|++||+++|+.++ +..|.|..++ ++++|+|||+|.+.++|++||+ .++..+.++.|.|..+....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 3799999999999999999999996 5589999998 9999999999999999999995 59999999999999886554
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=9.7e-16 Score=106.72 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred cEEEEcCCCCC-CCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFR-VNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~-~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||++ +|++||+++|+.++ |..|.| ++|+|||+|.+.++|++||+. ++..|.++.|.|..+..+.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 79999999999 99999999999996 558887 579999999999999999965 9999999999999987554
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=6.9e-16 Score=112.75 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|+|+|||+++|++||+++|+.++ +..|.|..++ ++++|+|||+|.++++|++||+ .++..+.++.|.|..+.+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 7999999999999999999999996 5599998885 8999999999999999999998 5999999999999988765
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 84 ~ 84 (168)
T 1b7f_A 84 G 84 (168)
T ss_dssp S
T ss_pred c
Confidence 4
No 150
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.5e-16 Score=103.47 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~~ 132 (152)
.+|||+|||+++|++||+++|+.++ |..|.|+.+ ++|||||+|.++++|++|+.+ ...+.++.|+|..+.++..
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCCC
Confidence 7999999999999999999999996 568888865 789999999999999876544 4556899999998877663
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=8.7e-16 Score=118.23 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|++||+++|+.++ |+.|+|+.|.+.++|+|||+|.+.++|++||+. |+..|++|.|.|..+.++
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 6899999999999999999999995 669999998877899999999999999999985 999999999999987654
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=4.4e-16 Score=103.52 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=61.1
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC----C--------ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV----V--------PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~----~--------~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I 122 (152)
.+|||+|||+++|++||+++|+++ + +..|.|..+ +|+|||+|.++++|++||..++..+.+|.|
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 799999999999999999999988 4 557887754 799999999999999999669999999999
Q ss_pred EEEe
Q psy3068 123 ELFL 126 (152)
Q Consensus 123 ~V~~ 126 (152)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8863
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=1.8e-15 Score=103.69 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=64.6
Q ss_pred ccEEEEcCCCC-CCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPF-RVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~-~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+ ++|+++|+++|+.++ |..|.|. +|+|||+|.+.++|++||+ .++..+.++.|.|..+...
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 48999999999 999999999999996 5588873 7999999999999999999 5999999999999988654
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.7e-15 Score=105.93 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=65.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|++||+++|+.++ |..|.|. +|+|||+|.+.++|++||+. ++..+.++.|.|..+....
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 47999999999999999999999996 5688877 69999999999999999985 9999999999999987665
No 155
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=101.62 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=63.6
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|++||+++|+.++. ..| +.++ ++ ||||+|.++++|++||+.++..|.++.|.|..+....
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCC
Confidence 69999999999999999999999974 466 4444 44 9999999999999999999999999999999886655
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.3e-15 Score=111.46 Aligned_cols=75 Identities=20% Similarity=0.129 Sum_probs=68.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|||+++|+++|+++|++++ |..|.|+.+ ++|||||+|.+.++|++||+ .++..|.++.|.|..+.++.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 37999999999999999999999995 668999876 68999999999999999998 49999999999999987654
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=106.70 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=58.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-----CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-----GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-----g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~ 125 (152)
.+|||+|||+++|++||+++|++++.+.+.++.++ |+++|||||+|.++++|++||+.. ..+.++.|.+.
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 68999999999999999999999975558887775 489999999999999999999864 23555555554
No 158
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=110.28 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=66.9
Q ss_pred ccEEEEcCCCCCCCHHHHH----cccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIV----DFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~----e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++++++|+ ++|++|+ |++|.|.. .++++|||||+|.+.++|++||+. ++..|.++.|.|..+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 3799999999999999976 6999996 55777643 278999999999999999999985 999999999999988
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 108 ~~~~ 111 (127)
T 2a3j_A 108 ETPQ 111 (127)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7654
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.1e-15 Score=112.22 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~ 128 (152)
..+|+|+|||+++|++||+++|++++ +..|.|..++ ++++|+|||+|.+.++|++||+. ++..++++.|.|..++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 37899999999999999999999996 5689999985 99999999999999999999995 9999999999998764
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=107.47 Aligned_cols=73 Identities=18% Similarity=0.077 Sum_probs=64.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|+.|+ |.+|.|+. ++|+|||+|.+.++|++||+. ++..+.++.|.|..+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 37999999999999999999999996 55788763 578999999999999999985 999999999999887554
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=2.1e-15 Score=114.49 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+ .++..|.++.|.|..+...
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 7999999999999999999999996 6699999886 8999999999999999999999 5999999999999766443
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.2e-15 Score=111.61 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+|||+++|+++|+++|+.++ +..|.|+.++ ++++|+|||+|.++++|++||+. .+.+.++.|.|..+..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 7999999999999999999999996 5699999986 99999999999999999999985 6788999998877643
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=101.00 Aligned_cols=75 Identities=9% Similarity=0.163 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEE-EEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYV-DINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v-~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~~ 131 (152)
.+|||+|||+++|+++|+++|+.++ |..| .|+.++ .+|.|||+|.+.++|++||+ .++..|.++.|.|..+.+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~--~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS--ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS--SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 7899999999999999999999996 5688 477775 23449999999999999998 59999999999999987654
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=2.7e-15 Score=112.46 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=72.0
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ +..|.|..++ ++++|+|||+|.+.++|++||+. ++..|.++.|.|..+.+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 37999999999999999999999996 5699999985 99999999999999999999995 99999999999999876
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 194 ~~ 195 (198)
T 2yh0_A 194 GA 195 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=4.2e-15 Score=109.02 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccC---CeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIR---HRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~---~R~I~V~~~ 127 (152)
..+|+|+|||+++|+++|+++|+.++ |..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+. +|.|.|..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 47999999999999999999999995 6699999998 99999999999999999999985 776554 489999875
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=9.3e-15 Score=106.68 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=67.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~ 127 (152)
..+|+|+|||+++|+++|+++|+.++ +..|.|+.++ ++++|+|||+|.+.++|++||+. ++..+.+ +.|+|..|
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 37999999999999999999999996 5689998886 89999999999999999999994 9999977 89998764
No 167
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=110.00 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEE------EEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYV------DINYKN-GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v------~i~~d~-g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~ 125 (152)
.+|||+|||+++|+++|+++|+.++ |..| .|.... ++++|||||+|.+.++|++||+ .++..|.++.|.|.
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 7999999999999999999999996 3342 122223 8999999999999999999999 49999999999999
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
.+....
T Consensus 126 ~a~~~~ 131 (143)
T 3egn_A 126 FARSAR 131 (143)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 986644
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=7e-15 Score=108.53 Aligned_cols=74 Identities=19% Similarity=0.425 Sum_probs=65.8
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~ 130 (152)
..+|+|+|||+++|++||+++|++++.+. ++ .. ++++|+|||+|.+.++|++||+. ++..|.+|.|.|..+.++
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~--~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIR--LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEE--EE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEE--Ee-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 37999999999999999999999986543 33 44 89999999999999999999995 999999999999988664
No 169
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-14 Score=95.75 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=64.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|| ++|++||+++|+.++ |..|.|. +++|+|||+|.+.++|++||+. ++..|.++.|.|..+.+..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 379999996 999999999999996 5588874 6789999999999999999975 9999999999999987765
Q ss_pred C
Q psy3068 132 R 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1e-14 Score=106.87 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-C---CcceEEEEEeCCHHHHHHHHHh-CCCccC---CeEEEEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-G---RPSGEADVYFATHEDAMQAMSK-DRTNIR---HRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g---~~~G~a~V~F~~~~dA~~Al~~-~~~~l~---~R~I~V~ 125 (152)
.+|||+|||+++|+++|+++|++++ |..|.|+.++ + +++|+|||+|.++++|++||+. ++..+. .+.|.|.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 7999999999999999999999996 5699999987 4 8999999999999999999985 665554 5677777
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
.+....
T Consensus 84 ~~~~~~ 89 (175)
T 3nmr_A 84 PADSEK 89 (175)
T ss_dssp ECGGGC
T ss_pred cccccc
Confidence 765443
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.54 E-value=1.7e-14 Score=104.78 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE--EEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY--IELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~--I~V~~ 126 (152)
.+|+|+|||+++|+++|+++|+.++ +..|.|..++ ++++|+|||+|.+.++|++||+. ++..+.++. |+|..
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 7899999999999999999999996 5689998886 89999999999999999999995 999999975 66654
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.9e-14 Score=108.68 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEeccCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~~~~ 130 (152)
.+|+|+|||+++|+++|+++|+.|+ |.+|.|..+ +++|||||+|.+.++|++|++. ++..|.+ +.|+|..++.+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5789999999999999999999996 568888654 4679999999999999999995 9999854 99999998776
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2e-15 Score=111.53 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=65.7
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCc-eEEEEecc-C-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVP-VYVDINYK-N-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~-~~v~i~~d-~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+++|++||+++|..++. .. .++.+ . ++++|+|||+|.++++|++||+.++..+.++.|.|..+...
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence 379999999999999999999998843 23 22333 3 88999999999999999999988999999999999988654
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 92 ~ 92 (175)
T 1fje_B 92 D 92 (175)
T ss_dssp S
T ss_pred c
Confidence 4
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=2.2e-14 Score=110.76 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=65.9
Q ss_pred cEEEEcCCC-CCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 55 HTVHMRGLP-FRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp-~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
.+|||+||| +++|+++|+++|+.++ |.+|+|+.+ .+|+|||+|.++++|++||+ .++..|.++.|.|..+..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 799999999 8999999999999996 669999876 37999999999999999998 499999999999998754
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=3.8e-14 Score=112.49 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred ccEEEEcCCCCC-CCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFR-VNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~-~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~ 129 (152)
..+|+|+|||++ +|++||+++|+.++ |..|.|..+. |+++|+|||+|.+.++|.+||+. ++..+.++.|.|..+.+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 379999999999 59999999999996 6699999998 99999999999999999999995 99999999999999877
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
.+
T Consensus 264 ~~ 265 (284)
T 3smz_A 264 GP 265 (284)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=6.5e-15 Score=108.07 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=63.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC----C--------ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV----V--------PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~----~--------~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I 122 (152)
.+|+|+|||+++|++||+++|+.+ + +.++.+. +++|+|||+|.++++|++||+.++..+.++.|
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE----TTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec----CCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 799999999999999999999988 3 3355544 56899999999999999999779999999999
Q ss_pred EEEeccCCC
Q psy3068 123 ELFLNSSSP 131 (152)
Q Consensus 123 ~V~~~~~~~ 131 (152)
.|..+....
T Consensus 81 ~v~~~~~~~ 89 (172)
T 2g4b_A 81 KIRRPHDYQ 89 (172)
T ss_dssp EEECCSSCC
T ss_pred eecCCcccC
Confidence 998876543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=5.1e-14 Score=111.64 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=67.6
Q ss_pred ccEEEEcCCCCCCCHHHHH----cccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFRVNEKDIV----DFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~----e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~ 127 (152)
..+|||+|||+++|++||+ ++|+.|+ |..|.|.. .++++|||||+|.+.++|++||+ .++..|.++.|.|..+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 4899999999999999977 8999996 56888775 47899999999999999999996 4999999999999887
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 88 ~~~~ 91 (282)
T 3pgw_A 88 KTDS 91 (282)
T ss_pred ccCc
Confidence 5543
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=9.7e-14 Score=101.08 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceE-EEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEeccC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGE-ADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLNSS 129 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~-a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~~~ 129 (152)
..|+|+|||+.+|+++|+++|+.++ |.+|.|..+ .+|| |||+|.+.++|++|++. ++..|.+ +.|+|..++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 5677999999999999999999996 568888753 4688 99999999999999996 9999977 8999999877
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 179
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.4e-14 Score=104.59 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=65.5
Q ss_pred cEEEEcCC----CCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCC----HHH----HHHHHH--h-CCCc
Q psy3068 55 HTVHMRGL----PFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFAT----HED----AMQAMS--K-DRTN 116 (152)
Q Consensus 55 ~~v~v~nL----p~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~----~~d----A~~Al~--~-~~~~ 116 (152)
..|+|+|| |+++++++|+++|+.|+ |..|.++.|+ |+++|||||+|.+ +++ |.+||+ . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 99999999999999996 5699999999 9999999999996 434 889988 3 9999
Q ss_pred cCCeEEEEEecc
Q psy3068 117 IRHRYIELFLNS 128 (152)
Q Consensus 117 l~~R~I~V~~~~ 128 (152)
|++|.|+|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998764
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=98.96 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHH----HHcccCCCC--ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKD----IVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~d----l~e~F~~~~--~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
.+|+|+|||+++++++ |+++|++|+ |++|. .|+|||.|.+.++|++||+. ++..+.+|.|+|..+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3499999999999998 558999994 66884 29999999999999999985 999999999999988
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 82 ~~~s 85 (96)
T 2diu_A 82 PKNR 85 (96)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 6654
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3.7e-14 Score=112.93 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=67.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
..+|||+|||+++|+++|++||+.++ |..|.|..+...++|+|||+|.+.++|++||+.++..+.++.|.|..+.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 47999999999999999999999996 5699999988446899999999999999999889999999999998764
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3.5e-14 Score=113.09 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=69.7
Q ss_pred ccEEEEcCCCCC-CCHHHHHcccCCCC-ceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 54 HHTVHMRGLPFR-VNEKDIVDFFSPVV-PVYVDINYKN---GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~-~te~dl~e~F~~~~-~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
..+|+|+|||++ +|+++|+++|+.++ |..|.|+.+. ++++|+|||+|.+.++|++||..++..|+++.|.|..+.
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLAD 289 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEec
Confidence 379999999999 99999999999996 5689998875 789999999999999999999559999999999999987
Q ss_pred CC
Q psy3068 129 SS 130 (152)
Q Consensus 129 ~~ 130 (152)
++
T Consensus 290 ~k 291 (292)
T 2ghp_A 290 KK 291 (292)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 183
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=99.37 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceE-EEEEeCCHHHHHHHHHh-CCCccCC--eEEEEEeccCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGE-ADVYFATHEDAMQAMSK-DRTNIRH--RYIELFLNSSS 130 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~-a~V~F~~~~dA~~Al~~-~~~~l~~--R~I~V~~~~~~ 130 (152)
.|+|.|||+.+|+++|+++|++++ |.+|.|... +|| |||+|.+.++|++||+. ++..|.+ +.|+|..+...
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 467899999999999999999996 568888642 387 99999999999999995 9998876 68999988766
Q ss_pred C
Q psy3068 131 P 131 (152)
Q Consensus 131 ~ 131 (152)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=3.1e-14 Score=106.64 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC----C--------ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEE
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV----V--------PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~----~--------~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I 122 (152)
.+|||+|||+++|++||+++|+.+ + +.++.+ ++++|+|||+|.++++|++||+.++..|.++.|
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 799999999999999999999987 3 234444 467899999999999999999779999999999
Q ss_pred EEEeccCC
Q psy3068 123 ELFLNSSS 130 (152)
Q Consensus 123 ~V~~~~~~ 130 (152)
.|..+...
T Consensus 81 ~v~~~~~~ 88 (198)
T 2yh0_A 81 KIRRPHDY 88 (198)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99987654
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.3e-13 Score=96.45 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=66.3
Q ss_pred cEEEEcCCCC-----CCCHHHHHcccCCCC-ceEEEEeccC---CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEE
Q psy3068 55 HTVHMRGLPF-----RVNEKDIVDFFSPVV-PVYVDINYKN---GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIEL 124 (152)
Q Consensus 55 ~~v~v~nLp~-----~~te~dl~e~F~~~~-~~~v~i~~d~---g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V 124 (152)
.+|+|+||.. +.+++||+++|+.++ |.+|.|+.++ ++++|+|||+|.+.++|++|++. |+..+.+|.|.|
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 7999999973 348999999999996 6699999875 58899999999999999999985 999999999999
Q ss_pred EeccCC
Q psy3068 125 FLNSSS 130 (152)
Q Consensus 125 ~~~~~~ 130 (152)
..+...
T Consensus 89 ~~a~~~ 94 (105)
T 2pe8_A 89 CFYNLD 94 (105)
T ss_dssp EECCHH
T ss_pred EEcCHH
Confidence 887553
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=8.8e-14 Score=110.36 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=70.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN--GRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~--g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ +..|.|+.++ ++++|+|||+|.+.++|++||+ .++..+.++.|.|..+.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 37999999999999999999999996 5689998886 9999999999999999999996 599999999999998866
Q ss_pred CC
Q psy3068 130 SP 131 (152)
Q Consensus 130 ~~ 131 (152)
..
T Consensus 175 ~~ 176 (284)
T 3smz_A 175 GQ 176 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=4.3e-14 Score=109.78 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=67.3
Q ss_pred ccEEEEcCCCC-CCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 54 HHTVHMRGLPF-RVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 54 ~~~v~v~nLp~-~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
..+|||+|||+ ++|+++|+++|+.++ |..|.|..++ +|+|||+|.+.++|++||+ .++..+.++.|.|..+...
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 48999999999 999999999999996 6689998875 7899999999999999998 6999999999999988654
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.4e-14 Score=101.35 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=61.8
Q ss_pred cEEEE--cCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCcc-----CCeEEEEE
Q psy3068 55 HTVHM--RGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNI-----RHRYIELF 125 (152)
Q Consensus 55 ~~v~v--~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l-----~~R~I~V~ 125 (152)
.+||| .|||+++|+++|+++|++++ |.+|.|+.+ +|||||+|+++++|++|++. |+..+ +++.|.|.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 78999 66999999999999999996 557777643 68999999999999999995 88877 68888887
Q ss_pred eccCCC
Q psy3068 126 LNSSSP 131 (152)
Q Consensus 126 ~~~~~~ 131 (152)
.+...+
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 775443
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.2e-13 Score=98.48 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEeccCCC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLNSSSP 131 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~~~~~ 131 (152)
..+|||+|| ++|++||+++|+.|+ |..|.|. +++|||||+|.+.++|++||+. ++..+.++.|.|..+....
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 479999996 799999999999996 5588876 6789999999999999999975 9999999999999987665
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.5e-13 Score=107.61 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=65.3
Q ss_pred CccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEEEEecc
Q psy3068 53 GHHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIR-HRYIELFLNS 128 (152)
Q Consensus 53 ~~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~-~R~I~V~~~~ 128 (152)
...+|||+|||+++|+++|+++|+.++ |..|.|..++ +|+|||+|.+.++|++||+. ++..+. ++.|+|..++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 348999999999999999999999995 6689988654 58999999999999999995 889998 9999998764
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=7e-14 Score=105.34 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=66.7
Q ss_pred cEEEEcCCCC-CCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccCC
Q psy3068 55 HTVHMRGLPF-RVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSSS 130 (152)
Q Consensus 55 ~~v~v~nLp~-~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~~ 130 (152)
.+|||+|||+ ++|+++|+++|+.++ +..|.|..++ +|+|||+|.+.++|++||+ .++..+.++.|.|..+...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 7999999999 999999999999996 6699998875 7899999999999999998 5999999999999887654
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=7.7e-14 Score=107.68 Aligned_cols=66 Identities=12% Similarity=0.266 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-c--eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-P--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHR 120 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~--~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R 120 (152)
.+|+|+|||+++|+++|+++|++++ + .+|.|..+.++.+|+|||+|.+.++|.+||.. |+..|.++
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 7999999999999999999999996 4 68888887766679999999999999999996 88888877
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=1.7e-13 Score=108.51 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=68.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh--CCCccC---CeEEEEEec
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK--DRTNIR---HRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~--~~~~l~---~R~I~V~~~ 127 (152)
.+|+|+|||+++|+++|+++|+.++ |..|.|+.+. |+++|+|||+|.+.++|.+||+. ++..+. +|.|.|.++
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 7999999999999999999999996 5699999998 99999999999999999999997 666665 889999887
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
....
T Consensus 177 ~~~~ 180 (261)
T 3sde_A 177 EQFD 180 (261)
T ss_dssp CCEE
T ss_pred cccC
Confidence 6543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.42 E-value=4.7e-13 Score=105.88 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=64.9
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMS-KDRTNIRHRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~~~~~l~~R~I~V~~~~~ 129 (152)
..+|||+|||+++|+++|+++|+.++ |..|.|.. ++|+|||+|.+.++|++||+ .++..|.++.|.|..+..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 37999999999999999999999996 55888864 47999999999999999998 599999999999988764
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2e-12 Score=90.42 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCCC-----------HHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 55 HTVHMRGLPFRVN-----------EKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 55 ~~v~v~nLp~~~t-----------e~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
.+|+|+||..... ++||+++|++++ |.+|.| .++ .++|+|||+|.++++|++||+. ++..+.+|.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 7999999944432 689999999996 558866 443 4899999999999999999975 999999999
Q ss_pred EEEEeccCCC
Q psy3068 122 IELFLNSSSP 131 (152)
Q Consensus 122 I~V~~~~~~~ 131 (152)
|.|..+.+..
T Consensus 94 l~v~~a~~~~ 103 (112)
T 2dit_A 94 ITAQAWDGTT 103 (112)
T ss_dssp CEEEECCSCC
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=3.7e-13 Score=101.37 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=65.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-c-eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-P-VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIR-HRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~-~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~-~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ . ..|.|..+ .+|+|||+|.+.++|++||+. ++..++ ++.|.|..+.+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 48999999999999999999999997 4 58888654 378999999999999999994 999999 99999988765
Q ss_pred C
Q psy3068 130 S 130 (152)
Q Consensus 130 ~ 130 (152)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 3
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=1.1e-12 Score=101.89 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=65.1
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-c-eEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccC-CeEEEEEeccC
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-P-VYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIR-HRYIELFLNSS 129 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~-~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~-~R~I~V~~~~~ 129 (152)
..+|+|+|||+++|+++|+++|+.++ . ..|.|..+ .+|+|||+|.+.++|++||+. ++..+. ++.|.|..+.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 48999999999999999999999997 4 47887543 468999999999999999994 999999 99999998865
Q ss_pred C
Q psy3068 130 S 130 (152)
Q Consensus 130 ~ 130 (152)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=1.4e-13 Score=95.97 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=60.4
Q ss_pred EcCCCCCCCHHHHHccc------------CCCC-ceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEE
Q psy3068 59 MRGLPFRVNEKDIVDFF------------SPVV-PVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIE 123 (152)
Q Consensus 59 v~nLp~~~te~dl~e~F------------~~~~-~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~ 123 (152)
+.|||+++++++|+++| ++++ |.+|.|+.+. ++++|+|||+|.++++|++|++. |+..+.+|.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888888777 9996 5699999988 99999999999999999999985 99999999999
Q ss_pred EEec
Q psy3068 124 LFLN 127 (152)
Q Consensus 124 V~~~ 127 (152)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=9.8e-13 Score=91.84 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=64.5
Q ss_pred cEEEEcCC--CCCCC--------HHHHHcccCCCC-ceEEEEeccC-C---CcceEEEEEeCCHHHHHHHHHh-CCCccC
Q psy3068 55 HTVHMRGL--PFRVN--------EKDIVDFFSPVV-PVYVDINYKN-G---RPSGEADVYFATHEDAMQAMSK-DRTNIR 118 (152)
Q Consensus 55 ~~v~v~nL--p~~~t--------e~dl~e~F~~~~-~~~v~i~~d~-g---~~~G~a~V~F~~~~dA~~Al~~-~~~~l~ 118 (152)
.+|.|+|| |.+.. ++||++.|++++ |.+|.|+++. + +++|+|||+|++.++|++|++. |+..++
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 79999998 54544 468999999996 5699999886 3 6899999999999999999985 999999
Q ss_pred CeEEEEEeccC
Q psy3068 119 HRYIELFLNSS 129 (152)
Q Consensus 119 ~R~I~V~~~~~ 129 (152)
+|.|.|.....
T Consensus 86 GR~i~v~~~~~ 96 (105)
T 3v4m_A 86 NRVVVTKYCDP 96 (105)
T ss_dssp TEECEEEEECH
T ss_pred CCEEEEEEeCH
Confidence 99999987654
No 200
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=1.5e-12 Score=103.64 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=64.1
Q ss_pred ccEEEEcCCCCCC---------CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCcc-----
Q psy3068 54 HHTVHMRGLPFRV---------NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNI----- 117 (152)
Q Consensus 54 ~~~v~v~nLp~~~---------te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l----- 117 (152)
..+|||+|||+++ ||++|+++|++++ |.+|.|+. ++|+|||+|.++++|+.|++. ++..|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4799999999998 7999999999996 56899885 479999999999999999985 88888
Q ss_pred -------CCeEEEEEeccCCC
Q psy3068 118 -------RHRYIELFLNSSSP 131 (152)
Q Consensus 118 -------~~R~I~V~~~~~~~ 131 (152)
.++.|.|..+...+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999887654
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-11 Score=84.77 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=61.2
Q ss_pred cEEEEcCCC-------CCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLP-------FRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp-------~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~ 126 (152)
.+|.|+-.+ .++|+++|+++|++|+ |..|.|+ ++++|||||+|+++++|+.||+. ...+.++.|.|..
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISW 86 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEEC
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEE
Confidence 678887554 5689999999999996 6688887 47899999999999999999998 4446788899988
Q ss_pred ccCCC
Q psy3068 127 NSSSP 131 (152)
Q Consensus 127 ~~~~~ 131 (152)
+....
T Consensus 87 a~~~~ 91 (100)
T 2d9o_A 87 LEGQP 91 (100)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87665
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=9e-12 Score=88.91 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=64.0
Q ss_pred cEEEEcCCCC-----CCCHHHHHcccCCCC-ceEEEEeccC-C-----CcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 55 HTVHMRGLPF-----RVNEKDIVDFFSPVV-PVYVDINYKN-G-----RPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 55 ~~v~v~nLp~-----~~te~dl~e~F~~~~-~~~v~i~~d~-g-----~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
.+|+|+||-. +--++||++.|+.++ |.+|.|+.++ + +++|++||+|.+.++|++|++. |+..+++|.
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 7999999842 234789999999996 5689998875 3 6789999999999999999996 999999999
Q ss_pred EEEEeccC
Q psy3068 122 IELFLNSS 129 (152)
Q Consensus 122 I~V~~~~~ 129 (152)
|.|.....
T Consensus 101 i~v~~~~~ 108 (118)
T 3ue2_A 101 VVAEVYDQ 108 (118)
T ss_dssp CEEEEECH
T ss_pred EEEEEcCh
Confidence 99987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=5.1e-11 Score=99.17 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCCCccEEEEcC--CCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCcc
Q psy3068 50 SGPGHHTVHMRG--LPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNI 117 (152)
Q Consensus 50 ~~~~~~~v~v~n--Lp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l 117 (152)
+.|+ .+|||.| |++++||+||+++|++++ |.+|.|+. .||||||+|.+.++|++||+. |+..+
T Consensus 15 ~~ps-~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYAT-QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCC-SEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCC-CEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4455 7999998 689999999999999996 55776653 479999999999999999996 77655
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=5.8e-10 Score=79.05 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCC----------CHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEE
Q psy3068 55 HTVHMRGLPFRV----------NEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYI 122 (152)
Q Consensus 55 ~~v~v~nLp~~~----------te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I 122 (152)
.+|.|+||=.-. .++||++.|+.++ |.+|.|..+ .++|+|||+|.+.++|++|++. |+..+++|.|
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--CTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 789999873322 2357899999996 569988766 3689999999999999999985 9999999999
Q ss_pred EEEeccC
Q psy3068 123 ELFLNSS 129 (152)
Q Consensus 123 ~V~~~~~ 129 (152)
.|..+..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9987654
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=3.4e-09 Score=76.12 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=60.1
Q ss_pred ccEEEEcCCCCC-CCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCC-HHHHHHHHHh---CCCccCCeEEEEEec
Q psy3068 54 HHTVHMRGLPFR-VNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFAT-HEDAMQAMSK---DRTNIRHRYIELFLN 127 (152)
Q Consensus 54 ~~~v~v~nLp~~-~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~-~~dA~~Al~~---~~~~l~~R~I~V~~~ 127 (152)
+..|+|.||+++ +|++||+++|++++ |..|.|..++ . +|||.|.+ +++|++||++ ++..|++..+.+...
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--K--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--S--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--C--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 489999999999 99999999999996 5578877764 2 69999999 8999999997 578888888877654
Q ss_pred c
Q psy3068 128 S 128 (152)
Q Consensus 128 ~ 128 (152)
+
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=4e-09 Score=72.19 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=58.8
Q ss_pred cEEEEcCCCC----CCCH----HHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEE
Q psy3068 55 HTVHMRGLPF----RVNE----KDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125 (152)
Q Consensus 55 ~~v~v~nLp~----~~te----~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~ 125 (152)
.||.|.-+|. +.-. .+|.+.|.+|+ ++.|+|+.|+ +||+|.+.++|.+||++|+..+.+|.|+|.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTITIA 81 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEEEE
Confidence 6788887662 2333 56889999997 7799998874 899999999999999999999999999999
Q ss_pred eccCC
Q psy3068 126 LNSSS 130 (152)
Q Consensus 126 ~~~~~ 130 (152)
.+++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=8.9e-09 Score=70.91 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=58.3
Q ss_pred ccEEEEcCCCCC-----CCH----HHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEE
Q psy3068 54 HHTVHMRGLPFR-----VNE----KDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIE 123 (152)
Q Consensus 54 ~~~v~v~nLp~~-----~te----~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~ 123 (152)
..||.|.-++.+ .-. .+|.+.|.+|+ ++.|+|+.|+ +||+|.+.++|.+||++|+..+++|.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVK 88 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence 378999988743 222 45888999996 7799999884 9999999999999999999999999999
Q ss_pred EEecc
Q psy3068 124 LFLNS 128 (152)
Q Consensus 124 V~~~~ 128 (152)
|...+
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=1.2e-07 Score=72.76 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=60.2
Q ss_pred cEEEEcCC-----CCCCCHHHHHcccCCCC-ceEEEEeccC------CCcceEEEEEeCCHHHHHHHHHh-CCCccCCeE
Q psy3068 55 HTVHMRGL-----PFRVNEKDIVDFFSPVV-PVYVDINYKN------GRPSGEADVYFATHEDAMQAMSK-DRTNIRHRY 121 (152)
Q Consensus 55 ~~v~v~nL-----p~~~te~dl~e~F~~~~-~~~v~i~~d~------g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~ 121 (152)
.++.+.|+ ..+-.++||++.|+.++ |.+|.|+.+. ++++|++||+|.+.++|++||+. ++..+.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 45555543 23445678999999996 6688887654 48999999999999999999996 999999999
Q ss_pred EEEEeccC
Q psy3068 122 IELFLNSS 129 (152)
Q Consensus 122 I~V~~~~~ 129 (152)
|.|.....
T Consensus 205 i~~~~~~~ 212 (222)
T 3dxb_A 205 VVAEVYDQ 212 (222)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99987643
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=1.7e-05 Score=55.28 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-----C-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEecc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-----V-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNS 128 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-----~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~~ 128 (152)
.+|.|+|||.++.++.|.-+|+.- + +..|.... +-|+|+|.+.+.|++.|++..+.|.+-.|.|++.-
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 799999999999999999999962 2 44666432 67999999999999999998999999999999976
Q ss_pred CCC
Q psy3068 129 SSP 131 (152)
Q Consensus 129 ~~~ 131 (152)
+..
T Consensus 83 ~~~ 85 (104)
T 2dhx_A 83 PRA 85 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=3.6e-05 Score=54.35 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=59.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-----C-ceEEEEeccCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCeEEEEEe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-----V-PVYVDINYKNGRPSGEADVYFATHEDAMQAM-SKDRTNIRHRYIELFL 126 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-----~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al-~~~~~~l~~R~I~V~~ 126 (152)
.+|-|=|||..++...|+.|.++. + +++|.|..|. +=|+|+|.+..+|-+|. ..++..+.+|.|++--
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 689999999999999999999976 4 6799999885 34999999999987776 6799999999999853
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.33 E-value=0.00098 Score=45.92 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=46.2
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
.++++| ++|....-.||.++|++|+-+.|.-+-| -.|||.|.+++.|..||+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHh
Confidence 378999 9999999999999999998666665555 3799999999999999984
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0026 Score=45.16 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=56.4
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCC-eEEEEEecc
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRH-RYIELFLNS 128 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~-R~I~V~~~~ 128 (152)
...|.|-|.|... -..|..+|+.|+ |++.... ...-+-.|.|+++.+|++||.+|++.+++ -.|-|.++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4789999999986 566778888995 6666642 22358999999999999999999999985 678888874
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.00087 Score=46.27 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
++++| ++|....-.||.++|++|+-+.|.-+-| -.|||.|.+++.|..||..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET-----TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHh
Confidence 78888 9999999999999999998667776655 3799999999999999984
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.75 E-value=0.0016 Score=46.71 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=27.3
Q ss_pred EEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 82 YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 82 ~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
.+.|..+..+++|+|||+|.++++|++||+.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHh
Confidence 4667777778999999999999999999976
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.69 E-value=0.0056 Score=41.39 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=46.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceEEEEeccC---C-CcceEEEEEeCCHHHHHHHHHh-CCCcc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVYVDINYKN---G-RPSGEADVYFATHEDAMQAMSK-DRTNI 117 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~v~i~~d~---g-~~~G~a~V~F~~~~dA~~Al~~-~~~~l 117 (152)
.+|-||+||.+.||+++.+.+.++. +.-......+ + ..-.-|||.|.+.+++..-.+. +++.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999873 3333333332 1 2236799999999999888886 55433
No 216
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.18 E-value=0.011 Score=41.05 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=55.3
Q ss_pred cEEEEcCCCCCC-CH----HHHHcccCCCC-ceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh-CCCccCCeEEEEEec
Q psy3068 55 HTVHMRGLPFRV-NE----KDIVDFFSPVV-PVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRTNIRHRYIELFLN 127 (152)
Q Consensus 55 ~~v~v~nLp~~~-te----~dl~e~F~~~~-~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~-~~~~l~~R~I~V~~~ 127 (152)
++|+|+||+.++ +. +.++++|..+. .+.....+.-. =..|.|.++++|.+|-.+ |+..+.+..|+|+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 589999999866 33 35678888885 44544443222 368999999999999886 999999999999987
Q ss_pred cCCC
Q psy3068 128 SSSP 131 (152)
Q Consensus 128 ~~~~ 131 (152)
...+
T Consensus 82 q~~~ 85 (104)
T 1wey_A 82 QTLH 85 (104)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6443
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.77 E-value=0.014 Score=39.97 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceE-EEEeccC---C-CcceEEEEEeCCHHHHHHHHHh-CCCc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYKN---G-RPSGEADVYFATHEDAMQAMSK-DRTN 116 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~-v~i~~d~---g-~~~G~a~V~F~~~~dA~~Al~~-~~~~ 116 (152)
..|-||.||-..||+++.+.+.++-..+ ......+ . ..-.-|||.|.+.+++..-.++ +++.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 5799999999999999999888762221 1111111 1 1114699999999999998886 5533
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.54 E-value=0.0054 Score=52.68 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.5
Q ss_pred ccEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 54 ~~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
..+|+|. .|..+++.+|.++|++++++ ++++..+.| -+|.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4689998 69999999999999999765 788777655 5999999999999988765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.33 E-value=0.036 Score=39.30 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=37.2
Q ss_pred EEeccCCCcceEEEEEeCCHHHHHHHHH-h-CCCccCCeEEEEEeccC
Q psy3068 84 DINYKNGRPSGEADVYFATHEDAMQAMS-K-DRTNIRHRYIELFLNSS 129 (152)
Q Consensus 84 ~i~~d~g~~~G~a~V~F~~~~dA~~Al~-~-~~~~l~~R~I~V~~~~~ 129 (152)
.|..+..+.+|+++|+|.+.++|++||+ . ++..+.+ .|.|..+..
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3444546889999999999999999997 4 7889999 888887754
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.97 E-value=0.1 Score=37.47 Aligned_cols=74 Identities=7% Similarity=0.146 Sum_probs=53.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCC-ceE-EEEec------------c--CC-CcceEEEEEeCCHHHHHHHHHhCCCcc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVV-PVY-VDINY------------K--NG-RPSGEADVYFATHEDAMQAMSKDRTNI 117 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~-~~~-v~i~~------------d--~g-~~~G~a~V~F~~~~dA~~Al~~~~~~l 117 (152)
..|.|=|.|.+.+.. |.++|+.|+ |++ +.+.. . +. .......|.|+++.+|.+||.+|++.+
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 578888998877654 556677774 332 21111 0 01 124688999999999999999999999
Q ss_pred CCeEEEEEeccC
Q psy3068 118 RHRYIELFLNSS 129 (152)
Q Consensus 118 ~~R~I~V~~~~~ 129 (152)
++..|=|.+++.
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999888888754
No 221
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=92.50 E-value=0.21 Score=37.40 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=45.9
Q ss_pred cEEEEcCCCCC---------CCHHHHHccc--CCCCceEEEEeccCCCcceEEEEEeC-CHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFR---------VNEKDIVDFF--SPVVPVYVDINYKNGRPSGEADVYFA-THEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~---------~te~dl~e~F--~~~~~~~v~i~~d~g~~~G~a~V~F~-~~~dA~~Al~~ 112 (152)
.++.|-|+|.. .+.++|++.| ..|.+++|+.+.++.-.+|+|.|.|. +-.-...|+..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 46888999972 3346899977 89999999999888446799999999 66667777764
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.14 E-value=0.57 Score=40.33 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
++++|+ +|...+..||.+.|+.|+.+.|+.+-+ -.|+|.|.+++.|..+|+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd-----t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS-----SEEEEECSCHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC-----CeEEEEECCHHHHHHHHHH
Confidence 678887 888999999999999998777765544 3599999999999999985
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=46.28 E-value=65 Score=21.65 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCce-EEEEeccCCCcceEEEEEeCCHHHHHHHHHh
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~-~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
.-|.|=|+|..+-..++.--...++.. -+. .--|-|.|.|.+.++...||++
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycd------yidgqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCD------YIDGQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEE------ECSSCEEEEESSHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeee------eecCeeEEEecCChHHHHHHHH
Confidence 678899999999999987666655543 222 2237799999999999999997
No 224
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=44.64 E-value=38 Score=19.68 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=42.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC----CHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA----THEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~----~~~dA~~Al~~~~~ 115 (152)
.++.|.|+.-..-...|...+..+ ++..+.+... ++.+.|.|. +.++..+||++-+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL----QNRADVVFDPNLVKEEDIKEEIEDAGF 65 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG----GTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec----CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 468888888777778888888887 6766666543 467889985 67889999987553
No 225
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=43.88 E-value=33 Score=22.51 Aligned_cols=66 Identities=6% Similarity=0.074 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHcccCCC-Cc---eEEEEec-cC-CCcceEEEEEeCCHHHHHHHHHhCCC-ccCCeEEEEEec
Q psy3068 57 VHMRGLPFRVNEKDIVDFFSPV-VP---VYVDINY-KN-GRPSGEADVYFATHEDAMQAMSKDRT-NIRHRYIELFLN 127 (152)
Q Consensus 57 v~v~nLp~~~te~dl~e~F~~~-~~---~~v~i~~-d~-g~~~G~a~V~F~~~~dA~~Al~~~~~-~l~~R~I~V~~~ 127 (152)
|++--+|.+++-++|.+-+.+. .+ ..+.|.. |. |- .|++.+.+|++.||..-.. .=..-.|.||++
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD-----~itisSd~EL~eAl~l~~~n~~~~l~ihvf~~ 89 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGD-----PCTVSSQLELEEAFRLYELNKDSELLIHVFPC 89 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSC-----CEECCSHHHHHHHHHHHHHTSCCCEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCC-----cccccCHHHHHHHHHHHHccCCCCEEEEEccC
Confidence 4444567889988877554432 22 2344433 43 54 5899999999999994111 112335788864
No 226
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=39.71 E-value=18 Score=18.90 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCCCCC
Q psy3068 17 FGGGRGCFNNDRWNDR 32 (152)
Q Consensus 17 ~gg~gG~y~~~~~~~~ 32 (152)
+++.+|+|+++-|..+
T Consensus 2 gg~drgG~gpgKM~~r 17 (29)
T 4fdd_B 2 GGGDRGGFGPGKMDSR 17 (29)
T ss_pred CccccCCcCCcccccc
Confidence 3455677776655444
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.18 E-value=50 Score=19.31 Aligned_cols=57 Identities=5% Similarity=-0.011 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~ 115 (152)
.++.|.||.-..-...|...+..-++..+.+. ..++.+.|.|.+.++..+||++-+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~~gv~~~~v~----~~~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEEAGAKVEKVD----LNEAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHHTTCEEEEEC----SSEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHhccCCcEEEEEE----ccCCEEEEEECCHHHHHHHHHHcCC
Confidence 57889999887777888876665345555554 3457888998888888999987554
No 228
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=36.51 E-value=21 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEecc
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINYK 88 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~d 88 (152)
.||.++..+.|..-|..-++..|.|++.
T Consensus 57 ~LP~~vd~~~i~A~~~~~GvL~I~lPK~ 84 (85)
T 3q9p_A 57 TLPPGVDPTQVSSSLSPEGTLTVEAPMP 84 (85)
T ss_dssp ECCTTCCGGGCEEEECTTSEEEEEEECC
T ss_pred ECCCCcChHHcEEEECCCCEEEEEEEcC
Confidence 6899999999999997558999998864
No 229
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=41.76 E-value=7.8 Score=26.32 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=38.3
Q ss_pred CccEEEEcCCCCCCCHHHHHcccCCCCceEEEEeccC--CCcceEEEE--EeCCHHHHHHHHHhC
Q psy3068 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADV--YFATHEDAMQAMSKD 113 (152)
Q Consensus 53 ~~~~v~v~nLp~~~te~dl~e~F~~~~~~~v~i~~d~--g~~~G~a~V--~F~~~~dA~~Al~~~ 113 (152)
..++|.|-... ++++|.+|...+.+..+.+.... |+. =+..+ .|.+.++|++|++..
T Consensus 24 ~~YTLQL~a~~---~~~~l~~f~~~~~l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~L 84 (106)
T 2lfv_A 24 SHYTLQLSSSS---NYDNLNGWAKKENLKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTL 84 (106)
Confidence 34788887653 46668888888765556665543 443 22222 788999999999873
No 230
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=34.53 E-value=64 Score=18.23 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC---CHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA---THEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~---~~~dA~~Al~~~~~ 115 (152)
.++.|.||.-..-...|...+..+ ++..+.+... ++.+.|.|. +.++..+||++-+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA----LEQAVVSYHGETTPQILTDAVERAGY 64 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEECTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec----CCEEEEEECCCCCHHHHHHHHHHcCC
Confidence 467888888777778888888887 6766776544 456788874 66788888887553
No 231
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=33.01 E-value=48 Score=22.13 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=30.2
Q ss_pred HHHHHcccCCCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q psy3068 68 EKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 68 e~dl~e~F~~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~ 111 (152)
+-+|.+.++.+++.+..|..+..+..-|++++..+ +.+.++|.
T Consensus 26 WPEv~~~L~~aGi~~ysIfl~~~~~~LF~~~E~~d-~~~~~~~a 68 (104)
T 1x8d_A 26 WPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIES-EERWNAVA 68 (104)
T ss_dssp CHHHHHHHHHTTEEEEEEEEETTTTEEEEEEEESC-HHHHHHGG
T ss_pred CHHHHHHHHHcCCeEEEEEEECCCCeEEEEEEEcC-HHhHHhcc
Confidence 45677777788999877777754455799999998 33333443
No 232
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=31.24 E-value=50 Score=28.64 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=31.6
Q ss_pred HHHccc--C----CCCceEEEEeccC-CCcceEEEEEeCCHHHHHHHHHh
Q psy3068 70 DIVDFF--S----PVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 70 dl~e~F--~----~~~~~~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
||..+| . .++|+++.|..-+ -+..-.+++.|.+.++|.+++..
T Consensus 246 Dl~~l~~a~GseGtlGVt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~ 295 (571)
T 1f0x_A 246 DPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRH 295 (571)
T ss_dssp CGGGCCSSTTCTTSSEEEEEEEECEECCSSCEEEEEEESCHHHHHHHHHH
T ss_pred cHHHHHHhcCCCCceeEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 888888 2 4567777765555 34455678999999999888874
No 233
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=29.32 E-value=73 Score=17.26 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC---CHHHHHHHHHhCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA---THEDAMQAMSKDR 114 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~---~~~dA~~Al~~~~ 114 (152)
++.|.|+.=..-...|+..+..+ ++..+.+... .+.+.|.|. +.++..++|+.-+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE----KKSVVVEFDAPATQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT----TTEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC----CCEEEEEECCCCCHHHHHHHHHHcC
Confidence 46677776655667788888877 6666666543 456788876 5567777777644
No 234
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=29.27 E-value=66 Score=21.56 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-C----ce---EEEEeccCCCcceEEEEEeCCHHHHHHHH
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-V----PV---YVDINYKNGRPSGEADVYFATHEDAMQAM 110 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~----~~---~v~i~~d~g~~~G~a~V~F~~~~dA~~Al 110 (152)
.+.|..---+.+..||++-.... + .+ .++-.+..++++|||.| |.|.+.|++--
T Consensus 20 ~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 20 DFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp EEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 33333333577889998866632 2 12 22222233888999976 56666665543
No 235
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=27.74 E-value=83 Score=17.42 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC----CHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA----THEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~----~~~dA~~Al~~~~~ 115 (152)
.++.|.|+.-..-...|...+..+ ++..+.+... .+.+.|.|. +.++..++|+..+.
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~~i~~~i~~~G~ 68 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA----EGTVEVTIDSSVVTLKDIVAVIEDQGY 68 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEEETTTSCHHHHHHHHHHTTC
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec----CCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 468888887655566788777777 6666666543 456888875 45677788876553
No 236
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.23 E-value=71 Score=20.82 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=17.2
Q ss_pred CceEEEEecc-C-CCcceEEEEEeCC
Q psy3068 79 VPVYVDINYK-N-GRPSGEADVYFAT 102 (152)
Q Consensus 79 ~~~~v~i~~d-~-g~~~G~a~V~F~~ 102 (152)
.+.+|+|..- + ++-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 4556666443 3 8999999999875
No 237
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=27.09 E-value=63 Score=28.27 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=38.1
Q ss_pred cCCCCCCCHHHHHcccC----CCCce-EEEEeccC-CCcceEEEEEeCCHHHHHHHHHh
Q psy3068 60 RGLPFRVNEKDIVDFFS----PVVPV-YVDINYKN-GRPSGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 60 ~nLp~~~te~dl~e~F~----~~~~~-~v~i~~d~-g~~~G~a~V~F~~~~dA~~Al~~ 112 (152)
...+.+.+--||..+|- .|+|+ ++.|..-+ -..+-.+.|.|.+.++|.+|+..
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHH
Confidence 34555666668888885 35655 77776655 45567889999999999988874
No 238
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=26.82 E-value=40 Score=21.85 Aligned_cols=50 Identities=4% Similarity=-0.143 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHcccCC-------C-CceEEEEeccC-CC---cceEEEEEeCCHHHHHHHH
Q psy3068 61 GLPFRVNEKDIVDFFSP-------V-VPVYVDINYKN-GR---PSGEADVYFATHEDAMQAM 110 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~-------~-~~~~v~i~~d~-g~---~~G~a~V~F~~~~dA~~Al 110 (152)
.|..+++++++.++... + ++..+.+-.+. ++ ..-.-+++|++.++.+.-+
T Consensus 12 k~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 73 (103)
T 2qyc_A 12 EFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAYQ 73 (103)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHHHT
T ss_pred EECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHHHh
Confidence 46778888877766653 3 35566665554 33 3444566999999886543
No 239
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.55 E-value=1.4e+02 Score=19.98 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-C--c--e---EEEEeccCCCcceEEEEEeCCHHHHHH
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-V--P--V---YVDINYKNGRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~--~--~---~v~i~~d~g~~~G~a~V~F~~~~dA~~ 108 (152)
.+.|..---+.+..||++-.... + + + .++-.+..|+++|||.| |.|.+.|++
T Consensus 20 ~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 20 KFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34344433678889999877643 2 1 2 22222223889999976 566666543
No 240
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=25.27 E-value=1.5e+02 Score=19.68 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=30.9
Q ss_pred HHHcccCCCCceEEEEec-cC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEe
Q psy3068 70 DIVDFFSPVVPVYVDINY-KN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFL 126 (152)
Q Consensus 70 dl~e~F~~~~~~~v~i~~-d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~ 126 (152)
.|+++|..+....+.|.. |. |- .|.|.+.+++..||...+ ...++|+.
T Consensus 50 ~V~~lFp~l~~~~f~l~Y~DedGD-----lItiSsDeEL~~Al~~~~----~~~lRlyV 99 (102)
T 2kkc_A 50 RVAVLFPALRPGGFQAHYRAERGD-----LVAFSSDEELTMAMSYVK----DDIFRIYI 99 (102)
T ss_dssp HHHHHCTTSCSSCEEEEEECTTCC-----EEEECSHHHHHHHHHHCC----SSEEEEEE
T ss_pred HHHHHccccCCCcEEEEEECCCCC-----EEEecCHHHHHHHHHhcC----CCeEEEEE
Confidence 355666655444455544 43 54 599999999999998744 23455554
No 241
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=25.19 E-value=1.7e+02 Score=20.09 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=32.3
Q ss_pred HHHHcccCCCCceEEEEec-cC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCeEEEEEec
Q psy3068 69 KDIVDFFSPVVPVYVDINY-KN-GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127 (152)
Q Consensus 69 ~dl~e~F~~~~~~~v~i~~-d~-g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R~I~V~~~ 127 (152)
+.|+++|..+....+.|.. |. |- .|.|.+.++++.||...+ ...++|+..
T Consensus 64 ~kV~~lFp~L~~~~f~l~YkDEdGD-----lItISsDeEL~~Al~~~~----~~~lRlyVk 115 (117)
T 2ktr_A 64 SRVAVLFPALRPGGFQAHYRAERGD-----LVAFSSDEELTMAMSYVK----DDIFRIYIK 115 (117)
T ss_dssp HHHHHHCTTSCSSCEEEEEECTTCC-----EEEECSHHHHHHHHHHCC----SSEEEEEEE
T ss_pred HHHHHHccccCCCcEEEEEECCCCC-----EEEecCHHHHHHHHHhcC----CCeEEEEEE
Confidence 3455677666544455544 43 54 599999999999999744 235566543
No 242
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=23.97 E-value=73 Score=20.90 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.8
Q ss_pred ceEEEEEeCCHHHHHHHHHh
Q psy3068 93 SGEADVYFATHEDAMQAMSK 112 (152)
Q Consensus 93 ~G~a~V~F~~~~dA~~Al~~ 112 (152)
-+.|.+.|.|.++.++|+..
T Consensus 61 d~iael~fds~ea~~aa~~s 80 (108)
T 2ftr_A 61 YLMCEMYYDDHESLQQAMRT 80 (108)
T ss_dssp EEEEEEEESSHHHHHHHHHS
T ss_pred eEEEEEEECCHHHHHHHHcC
Confidence 58899999999999999964
No 243
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.77 E-value=87 Score=20.96 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=17.1
Q ss_pred CceEEEEecc-C-CCcceEEEEEeCC
Q psy3068 79 VPVYVDINYK-N-GRPSGEADVYFAT 102 (152)
Q Consensus 79 ~~~~v~i~~d-~-g~~~G~a~V~F~~ 102 (152)
.|.+|+|..- . ++-+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 4666666443 3 8889999999875
No 244
>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}
Probab=23.27 E-value=70 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=17.1
Q ss_pred ceEEEEEeCCHHHHHHHHH
Q psy3068 93 SGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 93 ~G~a~V~F~~~~dA~~Al~ 111 (152)
-+.|.+.|+|.++.++|+.
T Consensus 77 d~iael~FdS~eal~aA~~ 95 (127)
T 3bf4_A 77 VAMCAFICDSAENFYAAMY 95 (127)
T ss_dssp EEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHhC
Confidence 4789999999999999995
No 245
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=23.22 E-value=69 Score=21.43 Aligned_cols=51 Identities=2% Similarity=-0.156 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHcccCC-------C-CceEEEEeccC-CCc---ceEEEEEeCCHHHHHHHHH
Q psy3068 61 GLPFRVNEKDIVDFFSP-------V-VPVYVDINYKN-GRP---SGEADVYFATHEDAMQAMS 111 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~-------~-~~~~v~i~~d~-g~~---~G~a~V~F~~~~dA~~Al~ 111 (152)
.|..+++++++.++... + ++..+.+-.+. .+. .-.-+++|++.++.+.-+.
T Consensus 29 klK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 29 RWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHhc
Confidence 57778888877666543 3 35566665554 333 3445568999988875443
No 246
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=22.58 E-value=1e+02 Score=16.69 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=39.5
Q ss_pred EEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC----CHHHHHHHHHhCCC
Q psy3068 56 TVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA----THEDAMQAMSKDRT 115 (152)
Q Consensus 56 ~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~----~~~dA~~Al~~~~~ 115 (152)
++.|.|+.-..-...|...+..+ ++..+.+... .+.+.|.|. +.++..++|+..+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~~i~~~i~~~G~ 63 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK----KEKAVVKFDEANVQATEICQAINELGY 63 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEECTTTCCHHHHHHHHHTTSS
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec----CCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 57788887766677788888777 6666666543 467888886 45677788876553
No 247
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.30 E-value=96 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=15.4
Q ss_pred CceEEEEecc-C-CCcceEEEEEeCC
Q psy3068 79 VPVYVDINYK-N-GRPSGEADVYFAT 102 (152)
Q Consensus 79 ~~~~v~i~~d-~-g~~~G~a~V~F~~ 102 (152)
.+.+|+|..- . ++-+++|-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 3545555333 3 7888888888865
No 248
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=21.76 E-value=1.6e+02 Score=18.70 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=43.5
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC----CHHHHHHHHHhCCCc
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA----THEDAMQAMSKDRTN 116 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~----~~~dA~~Al~~~~~~ 116 (152)
.++.|.+|.-..-...|...+..+ ++..+.+... ++.+.|.|. +.++..++|+.-+..
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~----~~~~~V~~~~~~~~~~~i~~~i~~~Gy~ 72 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA----TGRLTVTYDPKQVSEITIQERIAALGYT 72 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT----TTEEEEEECTTTCSHHHHHHHHHTTTCC
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC----CCEEEEEECCCCCCHHHHHHHHHHcCCe
Confidence 468899998877788899999888 6666666543 467889987 456778888876543
No 249
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=21.41 E-value=34 Score=22.44 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHcccC-CCCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCC
Q psy3068 57 VHMRGLPFRVNEKDIVDFFS-PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRT 115 (152)
Q Consensus 57 v~v~nLp~~~te~dl~e~F~-~~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~ 115 (152)
|++=-||.+++-++|++-.. .+.+....+...+..+.|. +..+-++...||+++-+
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde~~g~---~i~sD~dl~~aiqrn~K 79 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGE---EIKTDSQVSNIIQAKLK 79 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSSSCCS---CCCSHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCCCCCC---cccCHHHHHHHHHhcCe
Confidence 44447899999999987444 4555444443333344455 88899999999997644
No 250
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.25 E-value=46 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV 78 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~ 78 (152)
..+.|.||||+++..-|..++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 368899999999999888888753
No 251
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=20.53 E-value=44 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHcccCCCCceEEEEeccC
Q psy3068 61 GLPFRVNEKDIVDFFSPVVPVYVDINYKN 89 (152)
Q Consensus 61 nLp~~~te~dl~e~F~~~~~~~v~i~~d~ 89 (152)
.||.++..+.|..-|+.-++..|.|++..
T Consensus 56 ~LP~~vd~~~i~A~~~~~GvL~I~~pK~~ 84 (90)
T 2y1y_A 56 RIPADVDPLTITSSMSSDGVLTVNGPRKQ 84 (90)
T ss_dssp ECCTTBCGGGCEEEECTTSEEEEEECBC-
T ss_pred ECCCCcChhHcEEEECCCCEEEEEEEcCC
Confidence 69999999999999954588899888754
No 252
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.41 E-value=1.4e+02 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCCCHHHHHcccCCC-Cc----e---EEEEeccCCCcceEEEEEeCCHHHHHH
Q psy3068 64 FRVNEKDIVDFFSPV-VP----V---YVDINYKNGRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 64 ~~~te~dl~e~F~~~-~~----~---~v~i~~d~g~~~G~a~V~F~~~~dA~~ 108 (152)
-+.+..||++-+..+ ++ + .+.-.+..|+++|||.|. .+.+.|++
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~IY-ds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVY-NSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEEE-SSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEEe-CCHHHHHh
Confidence 478899999877643 32 1 222222227888999874 66665554
No 253
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=20.40 E-value=1.2e+02 Score=16.58 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC---CHHHHHHHHHhCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA---THEDAMQAMSKDR 114 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~---~~~dA~~Al~~~~ 114 (152)
.++.|.|+.-..-...|...+..+ ++..+.+... .+.+.|.|. +.++..++|+.-+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~i~~~i~~~G 64 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA----LEQAVVSYHGETTPQILTDAVERAG 64 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEEC---CHHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc----CCEEEEEECCCCCHHHHHHHHHHcC
Confidence 467888887655567788888777 5666666543 456888886 3456677776644
No 254
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.28 E-value=93 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=26.3
Q ss_pred CCCCHHHHHcccCCC-C--ceEEE---Eec--cCCCcceEEEEEeCCHHHHHH
Q psy3068 64 FRVNEKDIVDFFSPV-V--PVYVD---INY--KNGRPSGEADVYFATHEDAMQ 108 (152)
Q Consensus 64 ~~~te~dl~e~F~~~-~--~~~v~---i~~--d~g~~~G~a~V~F~~~~dA~~ 108 (152)
-+.+..||++-.... + +..|. |.. ..++++|||.| |.|.+.|++
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 477888888866643 2 22222 222 22888999976 566666654
No 255
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.11 E-value=57 Score=26.48 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=33.7
Q ss_pred cEEEEcCCCCCCCHHHHHcccCC---------CCceEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCCccCCe
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSP---------VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR 120 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~---------~~~~~v~i~~d~g~~~G~a~V~F~~~~dA~~Al~~~~~~l~~R 120 (152)
....|.||||+++..=|..|+.. ++.+++.+.. ..|.|++-+.+-+...-++
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~lmv--------------QkEvA~Rl~A~PGsk~yg~ 203 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWM--------------PSTTARKLLARPGMHSRSK 203 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEEEE--------------EHHHHHHHHCCTTSTTCCH
T ss_pred ceEEEEECCCchHHHHHHHHHHhccccccccccCcceEEEEe--------------EHHHHHHhcCCCCCccccH
Confidence 35789999999999888887763 2334443332 2677777776655544443
No 256
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.08 E-value=1.2e+02 Score=16.62 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC----CHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA----THEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~----~~~dA~~Al~~~~~ 115 (152)
.++.|.|+.-..-...|...+..+ ++..+.+... .+.+.|.|. +.++..++|+..+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~----~~~~~v~~~~~~~~~~~i~~~i~~~G~ 66 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE----TRQAVVTFDDAKTSVQKLTKATADAGY 66 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT----TTEEEEEEETTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec----CCEEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467788887776677788888777 5666666543 456888885 45677888877553
No 257
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.06 E-value=1.2e+02 Score=17.22 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCCCHHHHHcccCCC-CceEEEEeccCCCcceEEEEEeC-CHHHHHHHHHhCCC
Q psy3068 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFA-THEDAMQAMSKDRT 115 (152)
Q Consensus 55 ~~v~v~nLp~~~te~dl~e~F~~~-~~~~v~i~~d~g~~~G~a~V~F~-~~~dA~~Al~~~~~ 115 (152)
.++.| |+.-..-...|+.-+..+ ++ .+.+... ++.+.|++. +.+++.+||++-+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~----~~~~~v~~~~~~~~i~~~i~~~Gy 60 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLP----NKKVCIESEHSMDTLLATLKKTGK 60 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETT----TTEEEEEESSCHHHHHHHHHTTCS
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcC----CCEEEEEecCCHHHHHHHHHHcCC
Confidence 46777 777666667777777665 56 6666554 345777775 78889999987554
Done!