Your job contains 1 sequence.
>psy3068
MYDANTTTTTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMR
GLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHR
YIELFLNSSSPRGGVGGSGFSRSELWAVHTSE
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3068
(152 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-1856 - symbol:hnrnph1 "heterogeneous... 265 1.5e-24 2
UNIPROTKB|E1BB17 - symbol:HNRNPH3 "Uncharacterized protei... 257 4.3e-22 1
UNIPROTKB|F1P8D3 - symbol:HNRNPH3 "Uncharacterized protei... 257 4.3e-22 1
UNIPROTKB|P31942 - symbol:HNRNPH3 "Heterogeneous nuclear ... 257 4.3e-22 1
RGD|1310019 - symbol:Hnrnph3 "heterogeneous nuclear ribon... 257 4.3e-22 1
UNIPROTKB|G3MYE8 - symbol:G3MYE8 "Uncharacterized protein... 257 4.3e-22 1
UNIPROTKB|B4DHY1 - symbol:HNRNPH3 "cDNA FLJ57726, highly ... 257 4.3e-22 1
UNIPROTKB|H0YB39 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 5.5e-22 1
UNIPROTKB|H0YBD7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 5.5e-22 1
UNIPROTKB|H0YBG7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 5.5e-22 1
UNIPROTKB|F1NBV8 - symbol:HNRNPH1 "Uncharacterized protei... 261 6.7e-22 1
UNIPROTKB|F1NJJ4 - symbol:HNRNPH1 "Uncharacterized protei... 259 1.2e-21 1
UNIPROTKB|I3L816 - symbol:HNRNPH1 "Uncharacterized protei... 256 1.2e-21 1
UNIPROTKB|F1NJJ5 - symbol:HNRNPH1 "Uncharacterized protei... 259 1.3e-21 1
UNIPROTKB|E9PCY7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 1.3e-21 1
UNIPROTKB|F1NEG6 - symbol:HNRNPH1 "Uncharacterized protei... 259 1.3e-21 1
UNIPROTKB|F5GZT4 - symbol:HNRNPH1 "Heterogeneous nuclear ... 252 1.5e-21 1
UNIPROTKB|E2R8D6 - symbol:E2R8D6 "Uncharacterized protein... 256 1.5e-21 1
UNIPROTKB|P31943 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 1.7e-21 1
UNIPROTKB|F2Z5H9 - symbol:HNRNPH1 "Uncharacterized protei... 256 1.7e-21 1
MGI|MGI:1891925 - symbol:Hnrnph1 "heterogeneous nuclear r... 256 1.7e-21 1
UNIPROTKB|G3V9Q3 - symbol:Hnrph1 "Heterogeneous nuclear r... 256 1.7e-21 1
ZFIN|ZDB-GENE-030131-275 - symbol:hnrnph1l "heterogeneous... 254 1.7e-21 1
UNIPROTKB|F1Q0B7 - symbol:GRSF1 "Uncharacterized protein"... 251 1.9e-21 1
UNIPROTKB|F1LRK4 - symbol:Grsf1 "Protein Grsf1" species:1... 251 1.9e-21 1
RGD|1310858 - symbol:Grsf1 "G-rich RNA sequence binding f... 251 1.9e-21 1
UNIPROTKB|E1BF20 - symbol:HNRNPH1 "Uncharacterized protei... 256 2.0e-21 1
UNIPROTKB|G8JLB6 - symbol:HNRNPH1 "Heterogeneous nuclear ... 256 2.0e-21 1
RGD|620840 - symbol:Hnrph1 "heterogeneous nuclear ribonuc... 255 2.2e-21 1
UNIPROTKB|Q8VHV7 - symbol:Hnrnph1 "Heterogeneous nuclear ... 255 2.2e-21 1
UNIPROTKB|Q5F3D2 - symbol:HNRNPH3 "Uncharacterized protei... 249 3.0e-21 1
UNIPROTKB|P52597 - symbol:HNRNPF "Heterogeneous nuclear r... 252 3.2e-21 1
UNIPROTKB|Q60HC3 - symbol:HNRNPF "Heterogeneous nuclear r... 252 3.2e-21 1
MGI|MGI:2138741 - symbol:Hnrnpf "heterogeneous nuclear ri... 252 3.2e-21 1
RGD|620366 - symbol:Hnrnpf "heterogeneous nuclear ribonuc... 252 3.2e-21 1
UNIPROTKB|F1P8D4 - symbol:HNRNPH1 "Uncharacterized protei... 248 3.9e-21 1
UNIPROTKB|E2RB90 - symbol:HNRNPF "Uncharacterized protein... 251 4.1e-21 1
UNIPROTKB|Q5E9J1 - symbol:HNRNPF "Heterogeneous nuclear r... 251 4.1e-21 1
UNIPROTKB|F5H5I6 - symbol:GRSF1 "G-rich sequence factor 1... 247 4.9e-21 1
UNIPROTKB|I3L687 - symbol:HNRNPH2 "Uncharacterized protei... 251 5.4e-21 1
UNIPROTKB|P55795 - symbol:HNRNPH2 "Heterogeneous nuclear ... 251 6.0e-21 1
MGI|MGI:1201779 - symbol:Hnrnph2 "heterogeneous nuclear r... 251 6.0e-21 1
RGD|1549784 - symbol:Hnrnph2 "heterogeneous nuclear ribon... 251 6.0e-21 1
UNIPROTKB|A5D9B4 - symbol:HNRPH2 "Heterogeneous nuclear r... 251 6.0e-21 1
UNIPROTKB|Q3SZF3 - symbol:HNRNPH2 "Heterogeneous nuclear ... 251 6.0e-21 1
UNIPROTKB|E2RJH5 - symbol:HNRNPH2 "Uncharacterized protei... 251 6.0e-21 1
UNIPROTKB|A6QPB2 - symbol:GRSF1 "Uncharacterized protein"... 246 6.3e-21 1
MGI|MGI:106479 - symbol:Grsf1 "G-rich RNA sequence bindin... 251 7.7e-21 1
UNIPROTKB|F1LMB8 - symbol:Grsf1 "Protein Grsf1" species:1... 251 7.7e-21 1
UNIPROTKB|F1RG16 - symbol:HNRNPF "Uncharacterized protein... 248 8.9e-21 1
ZFIN|ZDB-GENE-060421-3878 - symbol:zgc:136953 "zgc:136953... 246 1.2e-20 1
UNIPROTKB|H0Y8R1 - symbol:GRSF1 "G-rich sequence factor 1... 247 1.2e-20 1
UNIPROTKB|F1MZF0 - symbol:GRSF1 "Uncharacterized protein"... 246 1.2e-20 1
UNIPROTKB|H0YAK1 - symbol:GRSF1 "G-rich sequence factor 1... 247 1.7e-20 1
UNIPROTKB|F1RUP2 - symbol:GRSF1 "Uncharacterized protein"... 247 2.1e-20 1
UNIPROTKB|Q12849 - symbol:GRSF1 "G-rich sequence factor 1... 247 2.1e-20 1
UNIPROTKB|F1LV61 - symbol:F1LV61 "Uncharacterized protein... 225 3.3e-18 1
UNIPROTKB|E1BMP6 - symbol:E1BMP6 "Uncharacterized protein... 219 1.6e-17 1
ZFIN|ZDB-GENE-060825-196 - symbol:grsf1 "G-rich RNA seque... 209 1.9e-16 1
FB|FBgn0259139 - symbol:glo "glorund" species:7227 "Droso... 194 2.0e-14 1
UNIPROTKB|F2Z5W4 - symbol:LOC100737162 "Uncharacterized p... 178 1.0e-13 1
UNIPROTKB|F1NWS6 - symbol:GRSF1 "Uncharacterized protein"... 173 1.8e-12 1
UNIPROTKB|G3N1Y9 - symbol:G3N1Y9 "Uncharacterized protein... 172 2.5e-12 1
WB|WBGene00020936 - symbol:hrpf-1 species:6239 "Caenorhab... 151 6.0e-12 2
UNIPROTKB|I3LFQ0 - symbol:HNRNPH3 "Uncharacterized protei... 155 2.8e-11 1
UNIPROTKB|I3L8F5 - symbol:I3L8F5 "Uncharacterized protein... 151 7.4e-11 1
TAIR|locus:2156897 - symbol:AT5G66010 species:3702 "Arabi... 148 2.5e-10 1
UNIPROTKB|D6RBM0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 146 2.5e-10 1
UNIPROTKB|E5RGV0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 146 2.5e-10 1
WB|WBGene00022253 - symbol:hrpf-2 species:6239 "Caenorhab... 155 3.3e-10 1
UNIPROTKB|H0YBK1 - symbol:HNRNPH1 "Heterogeneous nuclear ... 132 7.6e-09 1
ZFIN|ZDB-GENE-070112-1732 - symbol:esrp1 "epithelial spli... 142 1.0e-08 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 140 2.5e-08 1
UNIPROTKB|Q5ZLR4 - symbol:ESRP2 "Epithelial splicing regu... 137 3.5e-08 1
ZFIN|ZDB-GENE-030131-9824 - symbol:esrp2 "epithelial spli... 137 3.7e-08 1
WB|WBGene00006367 - symbol:sym-2 species:6239 "Caenorhabd... 136 3.7e-08 1
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 138 4.1e-08 1
UNIPROTKB|I3L5T6 - symbol:I3L5T6 "Uncharacterized protein... 133 4.1e-08 1
UNIPROTKB|H0YBR2 - symbol:ESRP1 "Epithelial-splicing regu... 131 9.4e-08 1
UNIPROTKB|H0YBB3 - symbol:ESRP1 "Epithelial-splicing regu... 131 1.0e-07 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 134 1.1e-07 1
RGD|1560481 - symbol:Esrp1 "epithelial splicing regulator... 131 1.4e-07 1
MGI|MGI:1917326 - symbol:Esrp1 "epithelial splicing regul... 131 1.5e-07 1
UNIPROTKB|Q6NXG1 - symbol:ESRP1 "Epithelial splicing regu... 131 1.5e-07 1
UNIPROTKB|F1LP81 - symbol:Esrp1 "Epithelial-splicing regu... 131 1.5e-07 1
UNIPROTKB|F1PQY5 - symbol:ESRP1 "Uncharacterized protein"... 129 1.6e-07 1
UNIPROTKB|F1P509 - symbol:ESRP1 "Uncharacterized protein"... 129 1.6e-07 1
UNIPROTKB|F1PSN8 - symbol:ESRP1 "Uncharacterized protein"... 129 2.2e-07 1
UNIPROTKB|F1MVN3 - symbol:ESRP1 "Uncharacterized protein"... 129 2.4e-07 1
UNIPROTKB|F1RY52 - symbol:ESRP1 "Uncharacterized protein"... 129 2.5e-07 1
RGD|1310855 - symbol:Esrp2 "epithelial splicing regulator... 126 5.4e-07 1
UNIPROTKB|G3V8M2 - symbol:Esrp2 "Epithelial-splicing regu... 126 5.4e-07 1
UNIPROTKB|Q6DEZ7 - symbol:esrp1 "Epithelial splicing regu... 125 6.5e-07 1
UNIPROTKB|Q7ZY29 - symbol:esrp1 "Epithelial splicing regu... 125 6.5e-07 1
RGD|1308928 - symbol:Rbm19 "RNA binding motif protein 19"... 122 7.4e-07 1
UNIPROTKB|E5RGH4 - symbol:HNRNPH1 "Heterogeneous nuclear ... 111 1.3e-06 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 123 1.6e-06 1
UNIPROTKB|D6RIU0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 109 2.1e-06 1
UNIPROTKB|D6RFM3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 109 2.1e-06 1
UNIPROTKB|D6R9T0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 109 2.1e-06 1
WARNING: Descriptions of 46 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-040426-1856 [details] [associations]
symbol:hnrnph1 "heterogeneous nuclear
ribonucleoprotein H1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1856 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 CTD:3187 KO:K12898 InterPro:IPR012996
Pfam:PF08080 EMBL:CU855621 EMBL:CU658205 EMBL:BC065439
IPI:IPI00489200 RefSeq:NP_991247.1 UniGene:Dr.17640 SMR:Q6P0V0
Ensembl:ENSDART00000059918 GeneID:402984 KEGG:dre:402984
NextBio:20816791 Uniprot:Q6P0V0
Length = 403
Score = 265 (98.3 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 56/98 (57%), Positives = 69/98 (70%)
Query: 32 RPGGFAGP-RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KN 89
R GG+ G R GD + S GH VHMRGLP+R E DI +FFSP+ PV V + +
Sbjct: 228 RRGGYGGDGRYGDSGSSFQSTTGH-CVHMRGLPYRATETDIYNFFSPLNPVRVHLEIGPD 286
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 287 GRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 324
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/91 (38%), Positives = 57/91 (62%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP G V +RGLPF ++++IV FF+ +VP + + ++++ GR +G
Sbjct: 91 WVLKHTGPNCPETGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ + A +A+ K + I HRYIE+F
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIF 180
Score = 126 (49.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATH 103
+ G G V +RGLP+ + ++ FFS + I++ + GRPSGEA V F +
Sbjct: 2 ADGEGF-VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESE 60
Query: 104 EDAMQAMSKDRTNIRHRYIELF 125
ED A+ KDR + HRY+E+F
Sbjct: 61 EDLKIAVKKDRETMGHRYVEVF 82
Score = 32 (16.3 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 31 DRPGGFAG 38
DRPGG G
Sbjct: 207 DRPGGGRG 214
>UNIPROTKB|E1BB17 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
EMBL:DAAA02061815 IPI:IPI00696173 ProteinModelPortal:E1BB17
SMR:E1BB17 PRIDE:E1BB17 Ensembl:ENSBTAT00000019039 Uniprot:E1BB17
Length = 346
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 188 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 247
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 248 VAAMSKDKNNMQHRYIELFLN 268
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIF 89
>UNIPROTKB|F1P8D3 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
EMBL:AAEX03002774 RefSeq:XP_536369.2 ProteinModelPortal:F1P8D3
Ensembl:ENSCAFT00000000525 GeneID:479227 KEGG:cfa:479227
Uniprot:F1P8D3
Length = 346
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 188 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 247
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 248 VAAMSKDKNNMQHRYIELFLN 268
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIF 89
>UNIPROTKB|P31942 [details] [associations]
symbol:HNRNPH3 "Heterogeneous nuclear ribonucleoprotein H3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG262593 HOVERGEN:HBG055557 KO:K12898 EMBL:L32610
EMBL:AF132360 EMBL:AF132361 EMBL:AF132362 EMBL:AF132363
EMBL:AF132364 EMBL:AK091411 EMBL:AK291547 EMBL:AL117395
EMBL:BC004511 EMBL:BC039824 IPI:IPI00013877 IPI:IPI00216492
IPI:IPI00216493 IPI:IPI00216494 IPI:IPI00216495 IPI:IPI00216496
PIR:T17207 RefSeq:NP_036339.1 RefSeq:NP_067676.2 UniGene:Hs.643472
ProteinModelPortal:P31942 SMR:P31942 IntAct:P31942
MINT:MINT-5004191 STRING:P31942 PhosphoSite:P31942 DMDM:23503095
PaxDb:P31942 PRIDE:P31942 Ensembl:ENST00000265866
Ensembl:ENST00000354695 GeneID:3189 KEGG:hsa:3189 UCSC:uc001jnw.4
UCSC:uc001jnx.4 CTD:3189 GeneCards:GC10P070090 HGNC:HGNC:5043
HPA:HPA038264 MIM:602324 neXtProt:NX_P31942 PharmGKB:PA162391325
InParanoid:P31942 OMA:PYDRPLG OrthoDB:EOG49P9ZV PhylomeDB:P31942
ChiTaRS:HNRNPH3 GenomeRNAi:3189 NextBio:12680 ArrayExpress:P31942
Bgee:P31942 CleanEx:HS_HNRNPH3 Genevestigator:P31942
GermOnline:ENSG00000096746 Uniprot:P31942
Length = 346
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 188 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 247
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 248 VAAMSKDKNNMQHRYIELFLN 268
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIF 89
>RGD|1310019 [details] [associations]
symbol:Hnrnph3 "heterogeneous nuclear ribonucleoprotein H3
(2H9)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:1310019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 EMBL:CH473988
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OrthoDB:EOG49P9ZV
IPI:IPI00372854 RefSeq:NP_001102002.1 UniGene:Rn.60652 SMR:D4ABK7
Ensembl:ENSRNOT00000032600 GeneID:361838 KEGG:rno:361838
UCSC:RGD:1310019 NextBio:677788 Uniprot:D4ABK7
Length = 346
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 188 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 247
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 248 VAAMSKDKNNMQHRYIELFLN 268
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIF 89
>UNIPROTKB|G3MYE8 [details] [associations]
symbol:G3MYE8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02039421 Ensembl:ENSBTAT00000065600 OMA:EVPRRIM
Uniprot:G3MYE8
Length = 248
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 90 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 149
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 150 VAAMSKDKNNMQHRYIELFLN 170
>UNIPROTKB|B4DHY1 [details] [associations]
symbol:HNRNPH3 "cDNA FLJ57726, highly similar to
Heterogeneous nuclear ribonucleoprotein H3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
UniGene:Hs.643472 HGNC:HGNC:5043 ChiTaRS:HNRNPH3 EMBL:AC016395
EMBL:AK295316 IPI:IPI00908651 SMR:B4DHY1 STRING:B4DHY1
Ensembl:ENST00000441000 UCSC:uc010qiv.2 Uniprot:B4DHY1
Length = 238
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 49 SSG-PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDA 106
SSG G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA
Sbjct: 80 SSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDA 139
Query: 107 MQAMSKDRTNIRHRYIELFLN 127
+ AMSKD+ N++HRYIELFLN
Sbjct: 140 VAAMSKDKNNMQHRYIELFLN 160
>UNIPROTKB|H0YB39 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YB39 Ensembl:ENST00000521173 Bgee:H0YB39 Uniprot:H0YB39
Length = 277
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 145 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 203
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 204 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 237
Score = 92 (37.4 bits), Expect = 0.00060, P = 0.00060
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GR +GEA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 24 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 59
>UNIPROTKB|H0YBD7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YBD7 Ensembl:ENST00000523921 Bgee:H0YBD7 Uniprot:H0YBD7
Length = 195
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 84 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 142
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 143 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 176
>UNIPROTKB|H0YBG7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 PRIDE:H0YBG7
Ensembl:ENST00000519033 Bgee:H0YBG7 Uniprot:H0YBG7
Length = 185
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 26 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 84
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 85 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 118
>UNIPROTKB|F1NBV8 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00589313
Ensembl:ENSGALT00000009575 ArrayExpress:F1NBV8 Uniprot:F1NBV8
Length = 492
Score = 261 (96.9 bits), Expect = 6.7e-22, P = 6.7e-22
Identities = 57/100 (57%), Positives = 69/100 (69%)
Query: 30 NDRPG-GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
+DR G G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I
Sbjct: 287 SDRFGRGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 345
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 346 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 385
Score = 146 (56.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 183
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 184 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 214
Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 33 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 91
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 92 ESEEDVKLALKKDRETMGHRYVEVF 116
>UNIPROTKB|F1NJJ4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00684493
Ensembl:ENSGALT00000034274 ArrayExpress:F1NJJ4 Uniprot:F1NJJ4
Length = 499
Score = 259 (96.2 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 55/100 (55%), Positives = 66/100 (66%)
Query: 29 WNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
W G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I
Sbjct: 294 WTLFSAGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 352
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 353 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 392
Score = 146 (56.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 125 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 183
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 184 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 214
Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 33 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 91
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 92 ESEEDVKLALKKDRETMGHRYVEVF 116
>UNIPROTKB|I3L816 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU915704
Ensembl:ENSSSCT00000031735 Uniprot:I3L816
Length = 423
Score = 256 (95.2 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 269 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 327
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 328 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 361
Score = 146 (56.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 94 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 152
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 153 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 183
Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 7 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 65
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 66 VKLALKKDRETMGHRYVEVF 85
>UNIPROTKB|F1NJJ5 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00679403
Ensembl:ENSGALT00000034273 ArrayExpress:F1NJJ5 Uniprot:F1NJJ5
Length = 519
Score = 259 (96.2 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 55/100 (55%), Positives = 66/100 (66%)
Query: 29 WNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
W G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I
Sbjct: 314 WTLFSAGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 372
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 373 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 412
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 145 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 203
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 204 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 234
Score = 127 (49.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 53 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 111
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 112 ESEEDVKLALKKDRETMGHRYVEVF 136
>UNIPROTKB|E9PCY7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00908896
ProteinModelPortal:E9PCY7 SMR:E9PCY7 PRIDE:E9PCY7
Ensembl:ENST00000510411 ArrayExpress:E9PCY7 Bgee:E9PCY7
Uniprot:E9PCY7
Length = 429
Score = 256 (95.2 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|F1NEG6 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AADN02028603
EMBL:AADN02028604 EMBL:AADN02028605 EMBL:AADN02028590
EMBL:AADN02028591 EMBL:AADN02028592 EMBL:AADN02028593
EMBL:AADN02028594 EMBL:AADN02028595 EMBL:AADN02028596
EMBL:AADN02028597 EMBL:AADN02028598 EMBL:AADN02028599
EMBL:AADN02028600 EMBL:AADN02028601 EMBL:AADN02028602
IPI:IPI00823306 Ensembl:ENSGALT00000040330 ArrayExpress:F1NEG6
Uniprot:F1NEG6
Length = 521
Score = 259 (96.2 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 55/100 (55%), Positives = 66/100 (66%)
Query: 29 WNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
W G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I
Sbjct: 316 WTLFSAGMSDHRYGDGTSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIG 374
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+GR +GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 375 PDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 414
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 145 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 203
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 204 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 234
Score = 127 (49.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYF 100
+N S G+ V +RGLP+ + +++ FFS ++ + I + + GRPSGEA
Sbjct: 53 LNTESSEGY-VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAEL 111
Query: 101 ATHEDAMQAMSKDRTNIRHRYIELF 125
+ ED A+ KDR + HRY+E+F
Sbjct: 112 ESEEDVKLALKKDRETMGHRYVEVF 136
>UNIPROTKB|F5GZT4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00983613
ProteinModelPortal:F5GZT4 SMR:F5GZT4 PRIDE:F5GZT4
Ensembl:ENST00000511300 UCSC:uc011dgn.2 ArrayExpress:F5GZT4
Bgee:F5GZT4 Uniprot:F5GZT4
Length = 159
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 53/89 (59%), Positives = 63/89 (70%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +GEADV
Sbjct: 5 RYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADV 63
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLN 127
FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 64 EFATHEDAVAAMSKDKANMQHRYVELFLN 92
>UNIPROTKB|E2R8D6 [details] [associations]
symbol:E2R8D6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AAEX03007686
Ensembl:ENSCAFT00000000520 Uniprot:E2R8D6
Length = 439
Score = 256 (95.2 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|P31943 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008266 "poly(U) RNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008266 GO:GO:0000166
GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0043484
GO:GO:0000398 GO:GO:0071013 EMBL:CH471165 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557 EMBL:L22009 EMBL:CR456778
EMBL:AK124530 EMBL:BC001348 IPI:IPI00013881 PIR:I39358
RefSeq:NP_001244222.1 RefSeq:NP_005511.1 UniGene:Hs.604001 PDB:2LXU
PDBsum:2LXU ProteinModelPortal:P31943 SMR:P31943 IntAct:P31943
MINT:MINT-1160934 STRING:P31943 PhosphoSite:P31943 DMDM:1710632
REPRODUCTION-2DPAGE:IPI00013881 REPRODUCTION-2DPAGE:P31943
PaxDb:P31943 PRIDE:P31943 Ensembl:ENST00000356731
Ensembl:ENST00000393432 Ensembl:ENST00000442819 GeneID:3187
KEGG:hsa:3187 UCSC:uc003mke.4 CTD:3187 GeneCards:GC05M179043
HGNC:HGNC:5041 HPA:HPA001359 HPA:HPA016884 MIM:601035
neXtProt:NX_P31943 PharmGKB:PA162391284 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 GenomeRNAi:3187 NextBio:12670 ArrayExpress:P31943
Bgee:P31943 CleanEx:HS_HNRNPH1 Genevestigator:P31943
GermOnline:ENSG00000169045 InterPro:IPR012996 Pfam:PF08080
Uniprot:P31943
Length = 449
Score = 256 (95.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|F2Z5H9 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0071013 GeneTree:ENSGT00620000087736 CTD:3187
KO:K12898 InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:CU915704
RefSeq:XP_003123691.1 UniGene:Ssc.13767 ProteinModelPortal:F2Z5H9
SMR:F2Z5H9 PRIDE:F2Z5H9 Ensembl:ENSSSCT00000015317 GeneID:100519535
KEGG:ssc:100519535 Uniprot:F2Z5H9
Length = 449
Score = 256 (95.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>MGI|MGI:1891925 [details] [associations]
symbol:Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891925 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 CTD:3187 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080 EMBL:Y14196
EMBL:BC056224 IPI:IPI00133916 RefSeq:NP_067485.1 UniGene:Mm.21740
ProteinModelPortal:O35737 SMR:O35737 IntAct:O35737 STRING:O35737
PhosphoSite:O35737 REPRODUCTION-2DPAGE:IPI00133916
REPRODUCTION-2DPAGE:O35737 PaxDb:O35737 PRIDE:O35737 DNASU:59013
Ensembl:ENSMUST00000069304 Ensembl:ENSMUST00000109142 GeneID:59013
KEGG:mmu:59013 NextBio:314564 Bgee:O35737 Genevestigator:O35737
GermOnline:ENSMUSG00000007850 Uniprot:O35737
Length = 449
Score = 256 (95.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|G3V9Q3 [details] [associations]
symbol:Hnrph1 "Heterogeneous nuclear ribonucleoprotein H1,
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:CH473948
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
UniGene:Rn.23677 ProteinModelPortal:G3V9Q3 SMR:G3V9Q3 PRIDE:G3V9Q3
Ensembl:ENSRNOT00000059190 Uniprot:G3V9Q3
Length = 449
Score = 256 (95.2 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>ZFIN|ZDB-GENE-030131-275 [details] [associations]
symbol:hnrnph1l "heterogeneous nuclear
ribonucleoprotein H1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC044161 IPI:IPI00512644 RefSeq:NP_997754.1
UniGene:Dr.782 ProteinModelPortal:Q803W8 SMR:Q803W8 STRING:Q803W8
PRIDE:Q803W8 GeneID:321556 KEGG:dre:321556 CTD:321556
InParanoid:Q803W8 NextBio:20807425 ArrayExpress:Q803W8 Bgee:Q803W8
Uniprot:Q803W8
Length = 407
Score = 254 (94.5 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 55/95 (57%), Positives = 66/95 (69%)
Query: 34 GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRP 92
GG + R GD N S GH VHMRGLP+R E DI +FFSP+ PV V I +GR
Sbjct: 235 GGVSDGRYGDGG-NFQSTTGH-CVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRV 292
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
+GEADV FATHEDA+ AMS D+ N++HRY+ELFLN
Sbjct: 293 TGEADVEFATHEDAVAAMSNDKANMQHRYVELFLN 327
Score = 149 (57.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 36/91 (39%), Positives = 57/91 (62%)
Query: 45 WVNESSGP------GHHTVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP G V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 91 WVLKHTGPNCPETEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 149
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ + A +A+ K + I HRYIE+F
Sbjct: 150 EAFVQFASQDIAEKALKKHKERIGHRYIEIF 180
Score = 114 (45.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + Y + GRPSGEA V + +D A+
Sbjct: 9 VRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAVK 68
Query: 112 KDRTNIRHRYIELF 125
KDR ++ HRY+E+F
Sbjct: 69 KDRESMGHRYVEVF 82
>UNIPROTKB|F1Q0B7 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016331 "morphogenesis of embryonic
epithelium" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 EMBL:AAEX03009136
Ensembl:ENSCAFT00000004672 OMA:GESEMAN Uniprot:F1Q0B7
Length = 281
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 45/74 (60%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y NG+ +GEADV+F THEDA+ AM KD
Sbjct: 202 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKD 261
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 262 RSHVHHRYIELFLN 275
Score = 152 (58.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 53 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 112
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 113 EEIGNRYIEIF 123
>UNIPROTKB|F1LRK4 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 GeneTree:ENSGT00620000087736
IPI:IPI00364208 PRIDE:F1LRK4 Ensembl:ENSRNOT00000004551
ArrayExpress:F1LRK4 Uniprot:F1LRK4
Length = 361
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 279 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 338
Query: 111 SKDRTNIRHRYIELFLN 127
KDR++++HRYIELFLN
Sbjct: 339 LKDRSHVQHRYIELFLN 355
Score = 152 (58.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 133 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 192
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 193 EEIGNRYIEIF 203
>RGD|1310858 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 CTD:2926 eggNOG:NOG319259
HOGENOM:HOG000220896 OrthoDB:EOG4XPQGW IPI:IPI00364208
EMBL:BC103654 RefSeq:NP_001094360.1 UniGene:Rn.66912 GeneID:305256
KEGG:rno:305256 UCSC:RGD:1310858 InParanoid:Q3SYP9 NextBio:654276
ArrayExpress:Q3SYP9 Genevestigator:Q3SYP9 Uniprot:Q3SYP9
Length = 142
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 60 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 119
Query: 111 SKDRTNIRHRYIELFLN 127
KDR++++HRYIELFLN
Sbjct: 120 LKDRSHVQHRYIELFLN 136
>UNIPROTKB|E1BF20 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:DAAA02018972
IPI:IPI00734138 Ensembl:ENSBTAT00000012357 Uniprot:E1BF20
Length = 472
Score = 256 (95.2 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|G8JLB6 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 ProteinModelPortal:G8JLB6
SMR:G8JLB6 PRIDE:G8JLB6 Ensembl:ENST00000329433 OMA:FSECKIQ
PhylomeDB:G8JLB6 Bgee:G8JLB6 Uniprot:G8JLB6
Length = 472
Score = 256 (95.2 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 146 (56.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>RGD|620840 [details] [associations]
symbol:Hnrph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:620840 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006396 GO:GO:0043484
eggNOG:NOG262593 HSSP:P55795 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 InterPro:IPR012996 Pfam:PF08080
EMBL:AF367468 EMBL:AABR03073723 EMBL:BC129087 IPI:IPI00202027
IPI:IPI00851133 IPI:IPI00851145 RefSeq:NP_543172.1 UniGene:Rn.23677
ProteinModelPortal:Q8VHV7 SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7
PhosphoSite:Q8VHV7 World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7
GeneID:140931 KEGG:rno:140931 UCSC:RGD:620840 CTD:140931
NextBio:620799 ArrayExpress:Q8VHV7 Genevestigator:Q8VHV7
Uniprot:Q8VHV7
Length = 449
Score = 255 (94.8 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 150 (57.9 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF +E++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|Q8VHV7 [details] [associations]
symbol:Hnrnph1 "Heterogeneous nuclear ribonucleoprotein H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006396 GO:GO:0043484 eggNOG:NOG262593 HSSP:P55795
HOGENOM:HOG000220896 HOVERGEN:HBG055557 KO:K12898
InterPro:IPR012996 Pfam:PF08080 EMBL:AF367468 EMBL:AABR03073723
EMBL:BC129087 IPI:IPI00202027 IPI:IPI00851133 IPI:IPI00851145
RefSeq:NP_543172.1 UniGene:Rn.23677 ProteinModelPortal:Q8VHV7
SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7 PhosphoSite:Q8VHV7
World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7 GeneID:140931 KEGG:rno:140931
UCSC:RGD:620840 CTD:140931 NextBio:620799 ArrayExpress:Q8VHV7
Genevestigator:Q8VHV7 Uniprot:Q8VHV7
Length = 449
Score = 255 (94.8 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 54/94 (57%), Positives = 65/94 (69%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD S GH VHMRGLP+R E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMSDHRYGDGGSTFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLN 362
Score = 150 (57.9 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF +E++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 48 (22.0 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 119 HRYIELFLN 127
HRY+ELFLN
Sbjct: 374 HRYVELFLN 382
>UNIPROTKB|Q5F3D2 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:AADN02028014 EMBL:AJ851718 IPI:IPI00573787
RefSeq:NP_001012610.1 UniGene:Gga.22904 SMR:Q5F3D2
Ensembl:ENSGALT00000006294 GeneID:423686 KEGG:gga:423686
InParanoid:Q5F3D2 NextBio:20826120 Uniprot:Q5F3D2
Length = 342
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 48/76 (63%), Positives = 59/76 (77%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
G H VHMRGLPFR E DI +FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMS
Sbjct: 196 GGHFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMS 255
Query: 112 KDRTNIRHRYIELFLN 127
KD+ +++HRYIELFLN
Sbjct: 256 KDKNHMQHRYIELFLN 271
Score = 148 (57.2 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 45 WVNESSGPGHHT-----VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGE 95
W + +GP T V +RGLPF ++++IV FF +VP + + ++Y+ GR +GE
Sbjct: 3 WTGKHNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQ-GRSTGE 61
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 AFVQFASKEIAENALGKHKERIGHRYIEIF 91
>UNIPROTKB|P52597 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043484 "regulation of RNA splicing" evidence=IDA;IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0000398 GO:GO:0071013
EMBL:CH471160 EMBL:AL512654 HOGENOM:HOG000220896 HOVERGEN:HBG055557
HPA:HPA001359 HPA:HPA016884 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:L28010 EMBL:AK001364 EMBL:BC001432 EMBL:BC004254
EMBL:BC015580 EMBL:BC016736 EMBL:BC106008 IPI:IPI00003881
PIR:S43484 RefSeq:NP_001091674.1 RefSeq:NP_001091675.1
RefSeq:NP_001091676.1 RefSeq:NP_001091677.1 RefSeq:NP_001091678.1
RefSeq:NP_004957.1 UniGene:Hs.712955 UniGene:Hs.808 PDB:2HGL
PDB:2HGM PDB:2HGN PDB:2KFY PDB:2KG0 PDB:2KG1 PDB:3TFY PDBsum:2HGL
PDBsum:2HGM PDBsum:2HGN PDBsum:2KFY PDBsum:2KG0 PDBsum:2KG1
PDBsum:3TFY ProteinModelPortal:P52597 SMR:P52597 IntAct:P52597
MINT:MINT-1157890 STRING:P52597 PhosphoSite:P52597 DMDM:1710628
OGP:P52597 PaxDb:P52597 PeptideAtlas:P52597 PRIDE:P52597 DNASU:3185
Ensembl:ENST00000337970 Ensembl:ENST00000356053
Ensembl:ENST00000357065 Ensembl:ENST00000443950
Ensembl:ENST00000544000 GeneID:3185 KEGG:hsa:3185 UCSC:uc001jar.2
GeneCards:GC10M043881 HGNC:HGNC:5039 MIM:601037 neXtProt:NX_P52597
PharmGKB:PA162391271 InParanoid:P52597 PhylomeDB:P52597
ChiTaRS:HNRNPF EvolutionaryTrace:P52597 GenomeRNAi:3185
NextBio:12654 ArrayExpress:P52597 Bgee:P52597 CleanEx:HS_HNRNPF
Genevestigator:P52597 GermOnline:ENSG00000169813 Uniprot:P52597
Length = 415
Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHED 105
G G V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D
Sbjct: 8 GEGF-VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDD 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 67 VKMALKKDRESMGHRYIEVF 86
>UNIPROTKB|Q60HC3 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9541 "Macaca fascicularis" [GO:0003727 "single-stranded RNA
binding" evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HOVERGEN:HBG055557 InterPro:IPR012996 Pfam:PF08080
EMBL:AB125204 EMBL:AB168246 ProteinModelPortal:Q60HC3 SMR:Q60HC3
PRIDE:Q60HC3 Uniprot:Q60HC3
Length = 415
Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHED 105
G G V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D
Sbjct: 8 GEGF-VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDD 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 67 VKMALKKDRESMGHRYIEVF 86
>MGI|MGI:2138741 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2138741
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0003727
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD ChiTaRS:HNRNPF EMBL:AK076478 EMBL:BC018185
EMBL:BC025481 EMBL:BC027003 EMBL:BC029163 EMBL:BC029764
EMBL:BC033483 EMBL:BC089313 IPI:IPI00226073 IPI:IPI00798511
RefSeq:NP_001159899.1 RefSeq:NP_001159900.1 RefSeq:NP_001159901.1
RefSeq:NP_001159902.1 RefSeq:NP_001159903.1 RefSeq:NP_001159904.1
RefSeq:NP_598595.1 UniGene:Mm.422979 UniGene:Mm.476420 PDB:2DB1
PDBsum:2DB1 ProteinModelPortal:Q9Z2X1 SMR:Q9Z2X1 IntAct:Q9Z2X1
STRING:Q9Z2X1 PhosphoSite:Q9Z2X1 REPRODUCTION-2DPAGE:Q9Z2X1
PaxDb:Q9Z2X1 PRIDE:Q9Z2X1 Ensembl:ENSMUST00000035493
Ensembl:ENSMUST00000163168 Ensembl:ENSMUST00000167182
Ensembl:ENSMUST00000167657 Ensembl:ENSMUST00000170346
Ensembl:ENSMUST00000180020 Ensembl:ENSMUST00000180341 GeneID:98758
KEGG:mmu:98758 UCSC:uc009dle.2 InParanoid:Q9Z2X1
EvolutionaryTrace:Q9Z2X1 NextBio:353639 Bgee:Q9Z2X1
Genevestigator:Q9Z2X1 GermOnline:ENSMUSG00000042079 Uniprot:Q9Z2X1
Length = 415
Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHE 104
G G+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +
Sbjct: 8 GEGY-VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESED 65
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D A+ KDR ++ HRYIE+F
Sbjct: 66 DVKLALKKDRESMGHRYIEVF 86
>RGD|620366 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0043484 "regulation of RNA splicing"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:620366 GO:GO:0005634 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HSSP:Q9Z2X1 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:AB022209 EMBL:BC097275 EMBL:BC103634
IPI:IPI00210357 RefSeq:NP_001032362.1 RefSeq:NP_001032363.1
RefSeq:NP_001032364.1 RefSeq:NP_071792.1 UniGene:Rn.144596
ProteinModelPortal:Q794E4 SMR:Q794E4 IntAct:Q794E4 STRING:Q794E4
PhosphoSite:Q794E4 PRIDE:Q794E4 Ensembl:ENSRNOT00000019529
GeneID:64200 KEGG:rno:64200 UCSC:RGD:620366 InParanoid:Q794E4
NextBio:612884 Genevestigator:Q794E4 GermOnline:ENSRNOG00000014562
Uniprot:Q794E4
Length = 415
Score = 252 (93.8 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDSEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 117 (46.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHE 104
G G+ V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +
Sbjct: 8 GEGY-VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESED 65
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D A+ KDR ++ HRYIE+F
Sbjct: 66 DVKLALKKDRESMGHRYIEVF 86
>UNIPROTKB|F1P8D4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:AAEX03018089 Ensembl:ENSCAFT00000000519 OMA:THEDAGA
Uniprot:F1P8D4
Length = 193
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 54/94 (57%), Positives = 63/94 (67%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI FFSP+ PV V I GR +
Sbjct: 69 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYIFFSPLNPVRVHIEIGPGGRVA 127
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA AMSKD+ N++HRY+ELFLN
Sbjct: 128 GEADVEFATHEDAGAAMSKDKANMQHRYVELFLN 161
>UNIPROTKB|E2RB90 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0003727 Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0071013
GeneTree:ENSGT00620000087736 KO:K12898 InterPro:IPR012996
Pfam:PF08080 CTD:3185 OMA:SDCTIRD EMBL:AAEX03015383
RefSeq:XP_848697.1 RefSeq:XP_856894.1 RefSeq:XP_856973.1
ProteinModelPortal:E2RB90 Ensembl:ENSCAFT00000011299 GeneID:477757
KEGG:cfa:477757 NextBio:20853178 Uniprot:E2RB90
Length = 414
Score = 251 (93.4 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDGEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHED 105
G G V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D
Sbjct: 8 GEGF-VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDD 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 67 VKMALKKDRESMGHRYIEVF 86
>UNIPROTKB|Q5E9J1 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0003727 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484 HSSP:Q9Z2X1
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 EMBL:BT020929 EMBL:BC102955
IPI:IPI00685278 RefSeq:NP_001014860.1 UniGene:Bt.23170
ProteinModelPortal:Q5E9J1 SMR:Q5E9J1 STRING:Q5E9J1 PRIDE:Q5E9J1
Ensembl:ENSBTAT00000011658 GeneID:506917 KEGG:bta:506917 CTD:3185
eggNOG:NOG326351 InParanoid:Q5E9J1 OMA:SDCTIRD NextBio:20867801
Uniprot:Q5E9J1
Length = 414
Score = 251 (93.4 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 54/94 (57%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDGEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHE+A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 362
Score = 136 (52.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 35/90 (38%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++I+ FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 115 (45.5 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHE 104
G G V +RGLP+ + +D+ +F S V V+ I + GR SGEA V + +
Sbjct: 8 GEGF-VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHF-IYTREGRQSGEAFVELESED 65
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D A+ KDR ++ HRYIE+F
Sbjct: 66 DVKLALKKDRESMGHRYIEVF 86
>UNIPROTKB|F5H5I6 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
IPI:IPI00979483 ProteinModelPortal:F5H5I6 SMR:F5H5I6 PRIDE:F5H5I6
Ensembl:ENST00000545193 UCSC:uc011caz.1 ArrayExpress:F5H5I6
Bgee:F5H5I6 Uniprot:F5H5I6
Length = 362
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 343 RSHVHHRYIELFLN 356
Score = 152 (58.6 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 193
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 194 EEIGNRYIEIF 204
>UNIPROTKB|I3L687 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:MEANMTI
Ensembl:ENSSSCT00000030700 Uniprot:I3L687
Length = 437
Score = 251 (93.4 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 258 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 316
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 317 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 350
Score = 115 (45.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYKNGRPSGEA 96
WV + +GP V +RGLPF ++++IV FFS +VP NG EA
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--------NGX---EA 143
Query: 97 DVYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A +A+ K + I HRYIE+F
Sbjct: 144 FVQFASQEIAEKALKKHKERIGHRYIEIF 172
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + I + + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 362 HSYVELFLN 370
>UNIPROTKB|P55795 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:U78027 EMBL:AL035422 GO:GO:0000398
EMBL:CH471115 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 HPA:HPA001359 HPA:HPA016884 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:U01923 EMBL:BC130343 EMBL:BC130345 IPI:IPI00026230
RefSeq:NP_001027565.1 RefSeq:NP_062543.1 UniGene:Hs.432485 PDB:1WEZ
PDB:1WG5 PDBsum:1WEZ PDBsum:1WG5 ProteinModelPortal:P55795
SMR:P55795 IntAct:P55795 MINT:MINT-2804293 STRING:P55795
PhosphoSite:P55795 DMDM:2500576 REPRODUCTION-2DPAGE:IPI00026230
PaxDb:P55795 PeptideAtlas:P55795 PRIDE:P55795 DNASU:3188
Ensembl:ENST00000316594 GeneID:3188 KEGG:hsa:3188 UCSC:uc004ehm.3
GeneCards:GC0XP100663 HGNC:HGNC:5042 HPA:CAB004436 MIM:300610
neXtProt:NX_P55795 PharmGKB:PA162391316 InParanoid:P55795
OMA:MEANMTI PhylomeDB:P55795 EvolutionaryTrace:P55795
GenomeRNAi:3188 NextBio:12674 ArrayExpress:P55795 Bgee:P55795
CleanEx:HS_HNRNPH2 Genevestigator:P55795 GermOnline:ENSG00000126945
Uniprot:P55795
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + I + + GRPSGEA V + E+ A+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>MGI|MGI:1201779 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1201779
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:U58105 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:AK077716 EMBL:AK164115 EMBL:AK168116 EMBL:AK169104
EMBL:BC005461 IPI:IPI00108143 RefSeq:NP_063921.1 UniGene:Mm.315909
ProteinModelPortal:P70333 SMR:P70333 STRING:P70333
PhosphoSite:P70333 PaxDb:P70333 PRIDE:P70333 DNASU:56258
Ensembl:ENSMUST00000050331 Ensembl:ENSMUST00000059297
Ensembl:ENSMUST00000074950 Ensembl:ENSMUST00000113202
Ensembl:ENSMUST00000113203 GeneID:56258 KEGG:mmu:56258
InParanoid:P70333 NextBio:312148 Bgee:P70333 Genevestigator:P70333
GermOnline:ENSMUSG00000045427 Uniprot:P70333
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 112 (44.5 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + ++++ FFS V Y + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>RGD|1549784 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2 (H')"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1549784 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0015629
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593
HSSP:P55795 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI EMBL:BC079240
IPI:IPI00464512 RefSeq:NP_001014041.1 UniGene:Rn.229731
ProteinModelPortal:Q6AY09 SMR:Q6AY09 IntAct:Q6AY09 STRING:Q6AY09
PhosphoSite:Q6AY09 PRIDE:Q6AY09 Ensembl:ENSRNOT00000015518
GeneID:308650 KEGG:rno:308650 UCSC:RGD:1549784 InParanoid:Q6AY09
NextBio:659306 Genevestigator:Q6AY09 Uniprot:Q6AY09
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 112 (44.5 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + ++++ FFS V Y + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>UNIPROTKB|A5D9B4 [details] [associations]
symbol:HNRPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 IPI:IPI00696405 UniGene:Bt.8355 OMA:MEANMTI
EMBL:DAAA02070773 EMBL:DAAA02070774 EMBL:BT030533 SMR:A5D9B4
Ensembl:ENSBTAT00000009864 InParanoid:A5D9B4 Uniprot:A5D9B4
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + I + + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>UNIPROTKB|Q3SZF3 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC102894 IPI:IPI00696405 RefSeq:NP_001069476.1
UniGene:Bt.8355 ProteinModelPortal:Q3SZF3 SMR:Q3SZF3 PRIDE:Q3SZF3
GeneID:534001 KEGG:bta:534001 CTD:3188 InParanoid:Q3SZF3
NextBio:20876226 Uniprot:Q3SZF3
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + I + + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>UNIPROTKB|E2RJH5 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736 KO:K12898
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI
EMBL:AAEX03026717 RefSeq:XP_861916.1 RefSeq:XP_862053.2
Ensembl:ENSCAFT00000028063 GeneID:480989 KEGG:cfa:480989
Uniprot:E2RJH5
Length = 449
Score = 251 (93.4 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 52/94 (55%), Positives = 66/94 (70%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G + R GD + S GH VHMRGLP+R E DI +FFSP+ P+ V I +GR +
Sbjct: 270 GMSDHRYGDGGSSFQSTTGH-CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATHEDA+ AM+KD+ N++HRY+ELFLN
Sbjct: 329 GEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 362
Score = 144 (55.7 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQAMS 111
V +RGLP+ + +++ FFS + I + + GRPSGEA V + ++ A+
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALK 72
Query: 112 KDRTNIRHRYIELF 125
KDR + HRY+E+F
Sbjct: 73 KDRETMGHRYVEVF 86
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 119 HRYIELFLN 127
H Y+ELFLN
Sbjct: 374 HSYVELFLN 382
>UNIPROTKB|A6QPB2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 OrthoDB:EOG4XPQGW GeneTree:ENSGT00620000087736
EMBL:DAAA02018025 EMBL:DAAA02018026 EMBL:BC149233 IPI:IPI00705255
UniGene:Bt.53639 SMR:A6QPB2 Ensembl:ENSBTAT00000039551
Uniprot:A6QPB2
Length = 362
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 283 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 342
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 343 RSHVHHRYIELFLN 356
Score = 153 (58.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHR 193
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 194 EEIGNRYIEIF 204
>MGI|MGI:106479 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106479 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016331 CTD:2926
eggNOG:NOG319259 HOGENOM:HOG000220896 HOVERGEN:HBG055557
OrthoDB:EOG4XPQGW EMBL:AK044889 EMBL:AK045986 EMBL:AK077782
IPI:IPI00453582 RefSeq:NP_848815.2 UniGene:Mm.332474
ProteinModelPortal:Q8C5Q4 SMR:Q8C5Q4 STRING:Q8C5Q4
PhosphoSite:Q8C5Q4 PaxDb:Q8C5Q4 PRIDE:Q8C5Q4 DNASU:231413
Ensembl:ENSMUST00000078945 GeneID:231413 KEGG:mmu:231413
UCSC:uc008yab.1 GeneTree:ENSGT00620000087736 InParanoid:Q8C5Q4
OMA:LSFFSDC NextBio:380544 Bgee:Q8C5Q4 CleanEx:MM_GRSF1
Genevestigator:Q8C5Q4 GermOnline:ENSMUSG00000044221 Uniprot:Q8C5Q4
Length = 479
Score = 251 (93.4 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 111 SKDRTNIRHRYIELFLN 127
KDR++++HRYIELFLN
Sbjct: 457 LKDRSHVQHRYIELFLN 473
Score = 152 (58.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 311 EEIGNRYIEIF 321
>UNIPROTKB|F1LMB8 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 OMA:LSFFSDC IPI:IPI00949228
PRIDE:F1LMB8 Ensembl:ENSRNOT00000065436 ArrayExpress:F1LMB8
Uniprot:F1LMB8
Length = 479
Score = 251 (93.4 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAM 110
P H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 111 SKDRTNIRHRYIELFLN 127
KDR++++HRYIELFLN
Sbjct: 457 LKDRSHVQHRYIELFLN 473
Score = 152 (58.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 311 EEIGNRYIEIF 321
>UNIPROTKB|F1RG16 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
KO:K12898 InterPro:IPR012996 Pfam:PF08080 CTD:3185 OMA:SDCTIRD
EMBL:CU468599 RefSeq:XP_001929089.1 RefSeq:XP_003359253.1
RefSeq:XP_003483523.1 UniGene:Ssc.93755 Ensembl:ENSSSCT00000011169
GeneID:100155475 KEGG:ssc:100155475 Uniprot:F1RG16
Length = 414
Score = 248 (92.4 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 53/94 (56%), Positives = 64/94 (68%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VHMRGLP++ E DI +FFSP+ PV V I +GR +
Sbjct: 270 GMYDHRYGDGEFTVQSTTGH-CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
GEADV FATH++A+ AMSKDR N++HRYIELFLN
Sbjct: 329 GEADVEFATHDEAVAAMSKDRANMQHRYIELFLN 362
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGE 95
WV + SGP V +RGLPF +++IV FFS +VP + + G+ +GE
Sbjct: 95 WVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 154
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V FA+ E A +A+ K + I HRYIE+F
Sbjct: 155 AFVQFASQELAEKALGKHKERIGHRYIEVF 184
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSPVV----PVYVDINY-KNGRPSGEADVYFATHED 105
G G V +RGLP+ + +D+ +F S V Y + GR SGEA V + +D
Sbjct: 8 GEGF-VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDD 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR ++ HRYIE+F
Sbjct: 67 VKMALKKDRESMGHRYIEVF 86
>ZFIN|ZDB-GENE-060421-3878 [details] [associations]
symbol:zgc:136953 "zgc:136953" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060421-3878 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:BX530068 IPI:IPI00485717 UniGene:Dr.76052
Ensembl:ENSDART00000057651 Ensembl:ENSDART00000113082
Uniprot:B8A5E1
Length = 396
Score = 246 (91.7 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 53/100 (53%), Positives = 67/100 (67%)
Query: 31 DRPGGFAGPRPGDRWVNESSGPGH--HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY- 87
DR G G G + N+S+ H H VHMRGLPFR E D+ FF P+ PV V I+
Sbjct: 267 DRGRGGTGTH-G--YSNDSNSGFHSGHFVHMRGLPFRATESDVAHFFGPLTPVRVHIDMG 323
Query: 88 KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
NG+ +GEADV F +HEDA+ AMSKD+ +++HRYIELFLN
Sbjct: 324 PNGKSTGEADVEFRSHEDAVSAMSKDKNHMQHRYIELFLN 363
Score = 149 (57.5 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + SGP + + +RGLPF ++++IV FFS +VP + + ++Y+ GR +G
Sbjct: 92 WVLKRSGPTDYDGSSGCMLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLPMDYQ-GRSTG 150
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 151 EAFVQFASKEIAEKALGKHKERIGHRYIEIF 181
Score = 132 (51.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHEDAMQA 109
+ V +RGLP+ ++++ FFS +V + + K GRPSGEA V + ED +A
Sbjct: 8 YVVRIRGLPWSCTQEEVASFFSDCDIVGKVNGVCFTFSKEGRPSGEAFVELKSSEDFKKA 67
Query: 110 MSKDRTNIRHRYIELF 125
++KDR + HRYIE+F
Sbjct: 68 LAKDRKYMGHRYIEVF 83
>UNIPROTKB|H0Y8R1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
PRIDE:H0Y8R1 Ensembl:ENST00000514161 Bgee:H0Y8R1 Uniprot:H0Y8R1
Length = 417
Score = 247 (92.0 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 338 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 397
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 398 RSHVHHRYIELFLN 411
Score = 152 (58.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 189 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 248
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 249 EEIGNRYIEIF 259
>UNIPROTKB|F1MZF0 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:DAAA02018025 EMBL:DAAA02018026 IPI:IPI00700446
Ensembl:ENSBTAT00000011313 ArrayExpress:F1MZF0 Uniprot:F1MZF0
Length = 399
Score = 246 (91.7 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 320 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKD 379
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 380 RSHVHHRYIELFLN 393
Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 171 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHR 230
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 231 EEIGNRYIEIF 241
>UNIPROTKB|H0YAK1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
OMA:LSFFSDC PRIDE:H0YAK1 Ensembl:ENST00000499044 Bgee:H0YAK1
Uniprot:H0YAK1
Length = 453
Score = 247 (92.0 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 374 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 433
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 434 RSHVHHRYIELFLN 447
Score = 152 (58.6 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 225 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 284
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 285 EEIGNRYIEIF 295
>UNIPROTKB|F1RUP2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:FP325194 RefSeq:XP_003129120.1 UniGene:Ssc.12808
Ensembl:ENSSSCT00000009793 GeneID:100516986 KEGG:ssc:100516986
Uniprot:F1RUP2
Length = 479
Score = 247 (92.0 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 400 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 459
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 460 RSHVHHRYIELFLN 473
Score = 152 (58.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 310
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 311 EEIGNRYIEIF 321
>UNIPROTKB|Q12849 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 EMBL:CH471057
GO:GO:0016331 EMBL:U07231 EMBL:AK056891 EMBL:AK090755 EMBL:AK094806
EMBL:AK095799 EMBL:AK097055 EMBL:AK127161 EMBL:AC021989
EMBL:BC040485 IPI:IPI00478657 IPI:IPI00914953 PIR:S48081
RefSeq:NP_001091947.1 RefSeq:NP_002083.3 UniGene:Hs.309763 PDB:2LMI
PDBsum:2LMI ProteinModelPortal:Q12849 SMR:Q12849 IntAct:Q12849
STRING:Q12849 PhosphoSite:Q12849 DMDM:215274142 PaxDb:Q12849
PRIDE:Q12849 Ensembl:ENST00000254799 Ensembl:ENST00000439371
Ensembl:ENST00000502323 GeneID:2926 KEGG:hsa:2926 UCSC:uc003hfs.2
CTD:2926 GeneCards:GC04M071681 HGNC:HGNC:4610 HPA:HPA036985
MIM:604851 neXtProt:NX_Q12849 PharmGKB:PA29003 eggNOG:NOG319259
HOGENOM:HOG000220896 HOVERGEN:HBG055557 InParanoid:Q12849
OrthoDB:EOG4XPQGW ChiTaRS:GRSF1 GenomeRNAi:2926 NextBio:11601
ArrayExpress:Q12849 Bgee:Q12849 CleanEx:HS_GRSF1
Genevestigator:Q12849 GermOnline:ENSG00000132463 Uniprot:Q12849
Length = 480
Score = 247 (92.0 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 44/74 (59%), Positives = 60/74 (81%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLPF+ N +DI++FF+P+ PV + + Y + G+ +GEADV+F THEDA+ AM KD
Sbjct: 401 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 460
Query: 114 RTNIRHRYIELFLN 127
R+++ HRYIELFLN
Sbjct: 461 RSHVHHRYIELFLN 474
Score = 152 (58.6 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V +RGLP+ NEKDIVDFF+ +V + ++Y+ R +GEA V F E A QA+ K R
Sbjct: 252 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 311
Query: 115 TNIRHRYIELF 125
I +RYIE+F
Sbjct: 312 EEIGNRYIEIF 322
>UNIPROTKB|F1LV61 [details] [associations]
symbol:F1LV61 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
IPI:IPI00952226 ProteinModelPortal:F1LV61
Ensembl:ENSRNOT00000020819 Uniprot:F1LV61
Length = 408
Score = 225 (84.3 bits), Expect = 3.3e-18, P = 3.3e-18
Identities = 51/117 (43%), Positives = 65/117 (55%)
Query: 35 GFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPS 93
G R GD S GH VH RGLP++ E DI +FFSP+ PV V +GR +
Sbjct: 270 GMYDHRYGDSEFTVQSATGH-CVHTRGLPYKATENDIYNFFSPLNPVRVHTEIGPDGRVT 328
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNXXXXXXXXXXXXXXXXELWAVHT 150
GEAD FATHE+A+ AMSKDR ++HRYI+LFLN + WA ++
Sbjct: 329 GEADAEFATHEEAVAAMSKDRA-MQHRYIQLFLNSTTGASSGAYSSQVM-QAWATYS 383
Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 36/99 (36%), Positives = 51/99 (51%)
Query: 36 FAGPRPGDRWVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVPVYVDIN- 86
F R G WV + SGP V ++GLP +++ + FFS +VP +
Sbjct: 87 FKPHRTGMDWVLKRSGPNSAYSANDGFVSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPV 146
Query: 87 YKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
Y G+ +GEA V FA+ E A +A K + I HRYIE+F
Sbjct: 147 YLEGKITGEAFVQFASQELAEKAFGKHKERIGHRYIEVF 185
Score = 103 (41.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHE 104
G G+ V + GLP+ + ++ +F S VV V+ I + GR SGEA V + E
Sbjct: 9 GEGY-VVKLLGLPWSCSIPEVQNFLSDCTIHDGVVGVHF-IYTREGRQSGEAFVKPESEE 66
Query: 105 DAMQAMSKDRTNIRHRYIELF 125
D A+ +DR ++ HRYIE+F
Sbjct: 67 DVKLALKEDRESMGHRYIEVF 87
>UNIPROTKB|E1BMP6 [details] [associations]
symbol:E1BMP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:DAAA02072842 IPI:IPI00699769 ProteinModelPortal:E1BMP6
Ensembl:ENSBTAT00000027332 Uniprot:E1BMP6
Length = 415
Score = 219 (82.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/89 (55%), Positives = 62/89 (69%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADV 98
R G+ V ++G H VHMRGLP++ E DI +F S + PV V I +GR + EADV
Sbjct: 279 RDGEFTVQSTTG---HCVHMRGLPYKATENDIYNF-SLLNPVRVHIEIGPDGRVTSEADV 334
Query: 99 YFATHEDAMQAMSKDRTNIRHRYIELFLN 127
FATHE+AM AMSK+R N++HRYIELFLN
Sbjct: 335 EFATHEEAMVAMSKNRANMQHRYIELFLN 363
Score = 130 (50.8 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 37 AGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPS 93
+GP GD SS G V +RGLPF E DI+ FFS ++P + + G+ +
Sbjct: 102 SGPNSGD-----SSSDGF--VRLRGLPFGCTE-DIIQFFSGLEIMPNRITLPVDPEGKTT 153
Query: 94 GEADVYFATHEDAMQAMSKDRTNI-RHRYIELF 125
GEA V FA+ E A +A+ K++ I HRYIE+F
Sbjct: 154 GEAFVQFASQELAEKALGKNKKRIIGHRYIEVF 186
>ZFIN|ZDB-GENE-060825-196 [details] [associations]
symbol:grsf1 "G-rich RNA sequence binding factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060825-196 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BX323596 GeneTree:ENSGT00620000087736
IPI:IPI01023901 ProteinModelPortal:F8W4V6
Ensembl:ENSDART00000149868 ArrayExpress:F8W4V6 Bgee:F8W4V6
Uniprot:F8W4V6
Length = 403
Score = 209 (78.6 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 49/101 (48%), Positives = 64/101 (63%)
Query: 29 W-NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY 87
W NDR F PR D + ++ + +HMRGLPF +DIV FF+PV + V + +
Sbjct: 299 WQNDRV--FT-PRAEDPPLRNTTVT-KNVIHMRGLPFDAKAEDIVKFFAPVRLMKVVVEF 354
Query: 88 -KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
G+P+GEA+ YF THEDA+ AMSKDR I RYIEL+LN
Sbjct: 355 GPEGKPTGEAEAYFKTHEDAVLAMSKDREFIMERYIELYLN 395
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
V +RGLP+ E DI+ FFS VV V + +N + G+ SG+A V FAT A +A+ K
Sbjct: 214 VRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILN-RRGKSSGDAFVEFATKAMAEKALKK 272
Query: 113 DRTNIRHRYIELF 125
DR + +RYIE+F
Sbjct: 273 DREILGNRYIEIF 285
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP------VVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +GLP+ +DI+ FFS V V++ N K G+PSG+A + ED +A+
Sbjct: 117 VQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYN-KYGKPSGQAFIELEHEEDVGKAL 175
Query: 111 SKDRTNIRHRYIEL 124
+ R +R R+IE+
Sbjct: 176 DQHRHYLRDRFIEV 189
>FB|FBgn0259139 [details] [associations]
symbol:glo "glorund" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006417
"regulation of translation" evidence=IMP;NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046427 "positive regulation of JAK-STAT cascade"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0043234
"protein complex" evidence=IPI] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0007311 "maternal specification of dorsal/ventral
axis, oocyte, germ-line encoded" evidence=IMP] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0043234 GO:GO:0006417 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0042060 GO:GO:0046427
GO:GO:0051276 GO:GO:0045451 GO:GO:0007311
GeneTree:ENSGT00620000087828 KO:K12898 FlyBase:FBgn0259139
UniGene:Dm.4997 GeneID:41431 KEGG:dme:Dmel_CG6946 CTD:41431
GenomeRNAi:41431 NextBio:823816 EMBL:AY089465 RefSeq:NP_650120.1
RefSeq:NP_731639.1 SMR:Q9VGH5 IntAct:Q9VGH5 MINT:MINT-293245
STRING:Q9VGH5 EnsemblMetazoa:FBtr0089917 EnsemblMetazoa:FBtr0089919
UCSC:CG6946-RA InParanoid:Q9VGH5 OMA:NFGPIGG Uniprot:Q9VGH5
Length = 586
Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 44/93 (47%), Positives = 55/93 (59%)
Query: 34 GGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRP 92
GG GP G R N+ ++T+HMRGLP+ E D+ FF P+ P V INY K G
Sbjct: 464 GGNFGPIGGGRG-NDIE---YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLH 519
Query: 93 SGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
SG AD YF T+ED+ AM + R + RYIELF
Sbjct: 520 SGTADAYFDTYEDSQVAMKRHREQMGSRYIELF 552
Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 37 AGPRPGDRWVNESSGPGH-HTVHMRGLPFRVNEKDIVDFFSPVVPVYVD------INYKN 89
A P+ + + SG G V +RGLP+ V E+ I +FFS + + D + +
Sbjct: 127 ATPKEAKEAMRKISGHGTAFVVKLRGLPYAVTEQQIEEFFSGL-DIKTDREGILFVMDRR 185
Query: 90 GRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GR +GEA V F + +D QA+ ++R I HRYIE+F
Sbjct: 186 GRATGEAFVQFESQDDTEQALGRNREKIGHRYIEIF 221
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPV------VPVYVDINYKNGRPSGEADVYFA 101
E+ G V +RGLP+ K+I+DF V +++ + +G+ +GEA V A
Sbjct: 42 ENVGESPKFVRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 102 THEDAMQAMSKDRTNIRHRYIELF 125
+ ED +A ++ ++ HRYIE+F
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVF 125
>UNIPROTKB|F2Z5W4 [details] [associations]
symbol:LOC100737162 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU468421
Ensembl:ENSSSCT00000011205 Uniprot:F2Z5W4
Length = 133
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 35/55 (63%), Positives = 44/55 (80%)
Query: 74 FFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
FFSP+ P+ V I+ +GR +GEADV F THEDA+ AMSKD+ N++HRYIELFLN
Sbjct: 1 FFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLN 55
>UNIPROTKB|F1NWS6 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 EMBL:AADN02009154 IPI:IPI00602123
Ensembl:ENSGALT00000018869 OMA:ISTKREM Uniprot:F1NWS6
Length = 411
Score = 173 (66.0 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQAMSKDR 114
TVH+RG P +V+ +DIVDFF+P+ P + I Y + G +GEADV+F +++DA+ AM+K+R
Sbjct: 330 TVHVRGFPPQVSAQDIVDFFAPLKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKER 389
Query: 115 TNIRHRYIELFL 126
++ +E+FL
Sbjct: 390 AQLQFGTVEVFL 401
Score = 120 (47.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 44 RWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATH 103
R+ +E G V +RGLPF E DI DFF+ + + Y+ R +GEA V FA
Sbjct: 165 RYESEVMSDG--VVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAP 222
Query: 104 EDAMQAMSKDRTNIRHRYIELFLN 127
E +A+ + + + +RYIE++++
Sbjct: 223 EMVAKALLRHKEYMENRYIEVYIS 246
>UNIPROTKB|G3N1Y9 [details] [associations]
symbol:G3N1Y9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02057210 Ensembl:ENSBTAT00000065958 Uniprot:G3N1Y9
Length = 426
Score = 172 (65.6 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 39/71 (54%), Positives = 45/71 (63%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
H+ HM G P R EK FSP+ PV V NGR +GEADV FATHEDA+ A SKD+
Sbjct: 281 HSAHMWGPPHRAPEKS----FSPLNPVRVHTETGNGRVTGEADVEFATHEDAVAATSKDK 336
Query: 115 TNIRHRYIELF 125
N+ H Y ELF
Sbjct: 337 ANMHHMY-ELF 346
Score = 112 (44.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 45 WVNESSGPGHHT-------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPS 93
WV E +GP H V + GLPF +++++V FF+ +VP + + ++ + R +
Sbjct: 93 WVLEHTGP-HSPDTASDGFVRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQR-RST 150
Query: 94 GEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
GEA V+FA+ E A A+ K + I RY+ +F
Sbjct: 151 GEAFVWFASQEIAEMALKKHKERIGRRYMGIF 182
>WB|WBGene00020936 [details] [associations]
symbol:hrpf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:FO081084 GeneID:172395 KEGG:cel:CELE_W02D3.11 CTD:172395
RefSeq:NP_740877.1 ProteinModelPortal:Q9BIB7 SMR:Q9BIB7
DIP:DIP-24897N IntAct:Q9BIB7 MINT:MINT-1090704 STRING:Q9BIB7
PRIDE:Q9BIB7 EnsemblMetazoa:W02D3.11a.1 EnsemblMetazoa:W02D3.11a.2
UCSC:W02D3.11b WormBase:W02D3.11a HOGENOM:HOG000017293
InParanoid:Q9BIB7 OMA:EPYAQRE NextBio:875329 ArrayExpress:Q9BIB7
Uniprot:Q9BIB7
Length = 549
Score = 151 (58.2 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI--NYKNGRPSGEADVYFATHEDAMQAMS 111
H + MRG+PFR +E D+ DFF P+ P V++ +++ RPSG+A V F +D A+
Sbjct: 470 HFVLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALM 529
Query: 112 KDRTNIRHRYIEL 124
KD+ + RYIE+
Sbjct: 530 KDKQYMGERYIEM 542
Score = 151 (58.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 40/90 (44%), Positives = 49/90 (54%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVD-I---NYKNGRPSGE 95
R DR SSGP V +RGLPF V +DI DF +P+ P+ D I + + RP GE
Sbjct: 109 RYSDRGGPRSSGPDS-IVRLRGLPFSVTSRDISDFLAPL-PIVRDGILLPDQQRARPGGE 166
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
A V F T E A + NI HRYIE+F
Sbjct: 167 AYVCFETMESVQIAKQRHMKNIGHRYIEVF 196
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
+ V RGLP+ E+++ DFF ++I +NGR SG+A V F ED A+ KDR
Sbjct: 5 YEVQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDR 64
Query: 115 TNIRHRYIELF 125
++ RYIE+F
Sbjct: 65 EHLGSRYIEVF 75
Score = 42 (19.8 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 42 GDRWVNESSGPG 53
G+ W N + GPG
Sbjct: 395 GESWANGAGGPG 406
Score = 33 (16.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 29 WNDRPGGFAGPRP 41
W + GG GP P
Sbjct: 398 WANGAGGPGGPPP 410
>UNIPROTKB|I3LFQ0 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 EMBL:FP476068
Ensembl:ENSSSCT00000027886 OMA:NDIANXH Uniprot:I3LFQ0
Length = 216
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 45 WVNESSGPGHH---TVHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSGEAD 97
WV + +GP TV +RGLPF ++++IV FF +VP + + ++Y+ GR +GEA
Sbjct: 3 WVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQ-GRSTGEAF 61
Query: 98 VYFATHEDAMQAMSKDRTNIRHRYIELF 125
V FA+ E A A+ K + I HRYIE+F
Sbjct: 62 VQFASKEIAENALGKHKERIGHRYIEIF 89
>UNIPROTKB|I3L8F5 [details] [associations]
symbol:I3L8F5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU861910
Ensembl:ENSSSCT00000030195 OMA:PENGSAM Uniprot:I3L8F5
Length = 194
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/75 (45%), Positives = 43/75 (57%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G H + M GL F EKDI +FFS + PV V + EADV F T +D + +MSK
Sbjct: 49 GGHIMLMGGLHFHSTEKDIANFFSTLNPVLVHTDISADGKETEADVEFMTCKDPVFSMSK 108
Query: 113 DRTNIRHRYIELFLN 127
D+ N H+Y EL LN
Sbjct: 109 DKNNTLHQYFELLLN 123
>TAIR|locus:2156897 [details] [associations]
symbol:AT5G66010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12898
IPI:IPI00541506 RefSeq:NP_201402.3 UniGene:At.28214
ProteinModelPortal:F4JZ11 SMR:F4JZ11 EnsemblPlants:AT5G66010.1
GeneID:836731 KEGG:ath:AT5G66010 OMA:YEVGSKR Uniprot:F4JZ11
Length = 255
Score = 148 (57.2 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 38 GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSG 94
GP R+ + + MRGLP+ VN+ I++FFS V+ V + + +G+ +G
Sbjct: 149 GPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATG 208
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V F T E+A +AM+KD+ +I RY+ELF
Sbjct: 209 EAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Score = 130 (50.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
G V +RGLPF + DI +FF+ + V V + KNG+ SGEA V FA A+ +
Sbjct: 47 GFPVVRLRGLPFNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQR 106
Query: 113 DRTNIRHRYIELF 125
DR N+ RY+E+F
Sbjct: 107 DRHNMGRRYVEVF 119
>UNIPROTKB|D6RBM0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HOGENOM:HOG000220896 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 IPI:IPI00964535 ProteinModelPortal:D6RBM0
SMR:D6RBM0 Ensembl:ENST00000505811 ArrayExpress:D6RBM0 Bgee:D6RBM0
Uniprot:D6RBM0
Length = 212
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 154 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 184
Score = 109 (43.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|E5RGV0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00974526
ProteinModelPortal:E5RGV0 SMR:E5RGV0 Ensembl:ENST00000519056
ArrayExpress:E5RGV0 Bgee:E5RGV0 Uniprot:E5RGV0
Length = 155
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 43 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 101
Query: 95 EADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
EA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 102 EAFVQFASQEIAEKALKKHKERIGHRYIEIF 132
>WB|WBGene00022253 [details] [associations]
symbol:hrpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 EMBL:FO081731 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K12898 RefSeq:NP_741422.1
ProteinModelPortal:Q8MXR2 SMR:Q8MXR2 DIP:DIP-24945N IntAct:Q8MXR2
MINT:MINT-1106723 STRING:Q8MXR2 PaxDb:Q8MXR2
EnsemblMetazoa:Y73B6BL.33 GeneID:177398 KEGG:cel:CELE_Y73B6BL.33
UCSC:Y73B6BL.33 CTD:177398 WormBase:Y73B6BL.33 HOGENOM:HOG000017787
InParanoid:Q8MXR2 OMA:QRMGRRY NextBio:896644 Uniprot:Q8MXR2
Length = 610
Score = 155 (59.6 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 49 SSG--PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
SSG P + +RGLPF EKDI +FF+ + V GRP+GEA V F E+A
Sbjct: 56 SSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEA 115
Query: 107 MQAMSKDRTNIRHRYIELF 125
+AM DR I +RYIE+F
Sbjct: 116 GKAMENDRKEISNRYIEVF 134
Score = 132 (51.5 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVV--PVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V+MRGLP+ ++ I FFSP+ V + IN + GRPSG+A F + D A+S++
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGIN-ETGRPSGDAIAEFDNYNDLQVALSRNN 385
Query: 115 TNIRHRYIELFLN 127
+ RY+ELF N
Sbjct: 386 QRMGRRYVELFDN 398
Score = 126 (49.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-----NYKNGRPSGEADVYFAT 102
+S+G +H + +RG+P+ E D+ FF + P +I RPSGEA V F T
Sbjct: 150 DSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTT 209
Query: 103 HEDAMQAMSKDRTNIRHRYIELFLN 127
+ A +AM + ++ RY+E+F++
Sbjct: 210 QDAAEKAMDYNNRHMGSRYVEVFMS 234
>UNIPROTKB|H0YBK1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015629 "actin cytoskeleton"
evidence=IDA] InterPro:IPR012677 GO:GO:0005634 GO:GO:0000166
GO:GO:0015629 Gene3D:3.30.70.330 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 Ensembl:ENST00000523449 Uniprot:H0YBK1
Length = 117
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLN 127
ADV FATHEDA+ AMSKD+ N++HRY+ELFLN
Sbjct: 2 ADVEFATHEDAVAAMSKDKANMQHRYVELFLN 33
>ZFIN|ZDB-GENE-070112-1732 [details] [associations]
symbol:esrp1 "epithelial splicing regulatory
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070112-1732 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 EMBL:BC129044 EMBL:BC134218 IPI:IPI00829273
RefSeq:NP_001074045.1 UniGene:Dr.13001 ProteinModelPortal:A1L1G1
SMR:A1L1G1 STRING:A1L1G1 Ensembl:ENSDART00000103431 GeneID:560190
KEGG:dre:560190 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 InParanoid:A4FVM7
KO:K14947 OMA:HIRQVIH OrthoDB:EOG42RD72 NextBio:20883322
Bgee:A1L1G1 Uniprot:A1L1G1
Length = 714
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF + ++ FFSP PV + + + +GRP+G+A V F+ E A A+
Sbjct: 328 VRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNAL 387
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 388 KKHKDMLGKRYIELF 402
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 140 (54.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 30 NDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYK 88
N+ PG A D+ N+ +TV +RG PF V EK++++F +P+ PV + I
Sbjct: 274 NEIPG--AARAEADKLANQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNA 331
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G +G V F + E+ QA+ +R + RYIE+F
Sbjct: 332 HGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIF 368
>UNIPROTKB|Q5ZLR4 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484
eggNOG:NOG262593 GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401
KO:K14947 HSSP:Q9Z2X1 EMBL:AJ719670 IPI:IPI00574410
RefSeq:NP_001025737.1 UniGene:Gga.9032 ProteinModelPortal:Q5ZLR4
SMR:Q5ZLR4 PRIDE:Q5ZLR4 Ensembl:ENSGALT00000005333 GeneID:415710
KEGG:gga:415710 CTD:80004 InParanoid:Q5ZLR4 OMA:VIKQKYE
OrthoDB:EOG49078K NextBio:20819270 Uniprot:Q5ZLR4
Length = 701
Score = 137 (53.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF ++D++ F P PV + + Y +GRP+G+A V F+ E A A+
Sbjct: 329 IRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 389 KKHKEILGKRYIELF 403
>ZFIN|ZDB-GENE-030131-9824 [details] [associations]
symbol:esrp2 "epithelial splicing regulatory
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0043484 "regulation of RNA
splicing" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-9824 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:Q9Z2X1 CTD:80004 EMBL:BC045439 EMBL:BC065688
IPI:IPI00488983 IPI:IPI00769676 RefSeq:NP_954966.1 UniGene:Dr.200
ProteinModelPortal:Q7ZVR8 SMR:Q7ZVR8 STRING:Q7ZVR8 PRIDE:Q7ZVR8
GeneID:572992 KEGG:dre:572992 InParanoid:Q7ZVR8 NextBio:20891026
Uniprot:Q7ZVR8
Length = 736
Score = 137 (53.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ MRGLPF +D++ F P PV + + Y +GRP+G+A V FA E A A+
Sbjct: 327 IRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 387 KKHKQILGKRYIELF 401
>WB|WBGene00006367 [details] [associations]
symbol:sym-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0010172 "embryonic body morphogenesis"
evidence=IGI] [GO:0050879 "multicellular organismal movement"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GO:GO:0010172 eggNOG:NOG262593 GeneTree:ENSGT00620000087828
KO:K14947 HSSP:P55795 EMBL:Z68319 EMBL:Z70038 EMBL:AY220985
PIR:T25208 RefSeq:NP_495960.2 UniGene:Cel.5905
ProteinModelPortal:Q22708 SMR:Q22708 IntAct:Q22708 STRING:Q22708
PaxDb:Q22708 EnsemblMetazoa:ZK1067.6 GeneID:174461
KEGG:cel:CELE_ZK1067.6 UCSC:ZK1067.6 CTD:174461 WormBase:ZK1067.6
HOGENOM:HOG000154473 InParanoid:Q22708 OMA:VENVMFT NextBio:884134
GO:GO:0050879 Uniprot:Q22708
Length = 618
Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 32/71 (45%), Positives = 40/71 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV--VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
V MRGLP+ + I FF P+ + I +GRP+G+A V F T EDA Q + K R
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKHR 342
Query: 115 TNIRHRYIELF 125
I RYIELF
Sbjct: 343 QVIGQRYIELF 353
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 138 (53.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 33 PGGFAGPRPGDRWVNESSGPGH-------HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI 85
P G P WV E P H HTV +RG PF V EK++++F +P+ PV + I
Sbjct: 268 PAGTGLPALPACWVTEK--PAHQREPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRI 325
Query: 86 -NYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G +G V F++ E+ +A+ +R + RYIE+F
Sbjct: 326 VRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGRYIEVF 366
>UNIPROTKB|I3L5T6 [details] [associations]
symbol:I3L5T6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU633293
Ensembl:ENSSSCT00000028833 Uniprot:I3L5T6
Length = 413
Score = 133 (51.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 37/108 (34%), Positives = 50/108 (46%)
Query: 42 GDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFA 101
G+ V ++G H +H+RGL E DI FFS + PV V G P G FA
Sbjct: 278 GEFTVQNTTG---HCIHLRGL---YTENDIYSFFSSLNPVRVHTGI--G-PDGRVISEFA 328
Query: 102 THEDAMQAMSKDRTNIRHRYIELFLNXXXXXXXXXXXXXXXXELWAVH 149
HE+ M A+SK R N + Y+ELFLN + A++
Sbjct: 329 IHEEDMAAISKHRANKQQSYMELFLNSTTGASNEAYSSHIARSIAAIY 376
Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 57 VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINYK-NGRPSGEADVYFATHEDAMQAMSKD 113
V ++GL F ++ I+ FFS ++P+++ + G+ +GEA V F + E A +A+
Sbjct: 112 VWLQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQELAEKALGDR 171
Query: 114 RTNIRHRYIELF 125
+ I HRYIE+F
Sbjct: 172 KERIGHRYIEVF 183
>UNIPROTKB|H0YBR2 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000519505
Uniprot:H0YBR2
Length = 502
Score = 131 (51.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 194 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 253
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 254 RKHKDLLGKRYIELF 268
Score = 103 (41.3 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 313 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 371
Query: 111 SK-DRTNIRHRYIELF 125
K + N++ RY+E+F
Sbjct: 372 QKCHKKNMKDRYVEVF 387
>UNIPROTKB|H0YBB3 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000517610
Bgee:H0YBB3 Uniprot:H0YBB3
Length = 522
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 187 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 246
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 247 RKHKDLLGKRYIELF 261
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 306 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 364
Query: 111 SK-DRTNIRHRYIELF 125
K + N++ RY+E+F
Sbjct: 365 QKCHKKNMKDRYVEVF 380
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKD 113
HTV +RG PF V EK++++F +P+ PV + I +G +G V F+ E+ QA+ +
Sbjct: 294 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 114 RTNIRHRYIELF 125
R + RYIE+F
Sbjct: 354 REYMGGRYIEVF 365
>RGD|1560481 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA;ISO;ISS] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
EMBL:AABR03040708 EMBL:AABR03042124 EMBL:BC166735 IPI:IPI00929919
IPI:IPI00948834 RefSeq:NP_001121036.2 UniGene:Rn.161971
Ensembl:ENSRNOT00000067129 GeneID:500409 KEGG:rno:500409
UCSC:RGD:1560481 NextBio:706112 ArrayExpress:B2RYD2
Genevestigator:B2RYD2 Uniprot:B2RYD2
Length = 677
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 506 QKYHKKTMKDRYVEVF 521
>MGI|MGI:1917326 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917326 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH466538 SUPFAM:SSF53098 GO:GO:0043484
EMBL:AL772170 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 EMBL:AK042164 EMBL:AK140848
EMBL:AK166376 EMBL:BC031468 EMBL:BC059280 IPI:IPI00377935
IPI:IPI00649037 IPI:IPI00828247 IPI:IPI00828788 IPI:IPI01027663
RefSeq:NP_918944.2 UniGene:Mm.387719 HSSP:Q9Z2X1
ProteinModelPortal:Q3US41 SMR:Q3US41 STRING:Q3US41 PaxDb:Q3US41
PRIDE:Q3US41 Ensembl:ENSMUST00000043781 Ensembl:ENSMUST00000108310
Ensembl:ENSMUST00000108313 Ensembl:ENSMUST00000147342
Ensembl:ENSMUST00000155519 GeneID:207920 KEGG:mmu:207920
UCSC:uc008rzk.2 UCSC:uc008rzl.2 UCSC:uc008rzm.2 UCSC:uc008rzn.1
InParanoid:Q3US41 NextBio:372085 Bgee:Q3US41 CleanEx:MM_RBM35A
Genevestigator:Q3US41 Uniprot:Q3US41
Length = 680
Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 327 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 386
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 387 RKHKELLGKRYIELF 401
Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 446 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 504
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 505 QKYHKKTMKDRYVEVF 520
>UNIPROTKB|Q6NXG1 [details] [associations]
symbol:ESRP1 "Epithelial splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593 KO:K14947 EMBL:BX647570
EMBL:AC108860 EMBL:AP005660 EMBL:BC019932 EMBL:BC067098
EMBL:BC099916 EMBL:BC112043 EMBL:AK000178 IPI:IPI00184262
IPI:IPI00654821 IPI:IPI00789651 IPI:IPI00797684 IPI:IPI00889741
RefSeq:NP_001030087.2 RefSeq:NP_001116297.1 RefSeq:NP_001116298.1
RefSeq:NP_001116299.1 RefSeq:NP_060167.2 UniGene:Hs.487471 PDB:2DHA
PDBsum:2DHA ProteinModelPortal:Q6NXG1 SMR:Q6NXG1 STRING:Q6NXG1
PhosphoSite:Q6NXG1 DMDM:124020999 PaxDb:Q6NXG1 PRIDE:Q6NXG1
Ensembl:ENST00000358397 Ensembl:ENST00000423620
Ensembl:ENST00000433389 Ensembl:ENST00000454170 GeneID:54845
KEGG:hsa:54845 UCSC:uc003ygq.4 UCSC:uc003ygr.4 UCSC:uc003ygt.4
UCSC:uc003ygv.3 GeneCards:GC08P095653 HGNC:HGNC:25966 HPA:HPA023719
HPA:HPA023720 MIM:612959 neXtProt:NX_Q6NXG1 PharmGKB:PA164719324
InParanoid:Q6NXG1 OMA:VAAMTEC ChiTaRS:ESRP1
EvolutionaryTrace:Q6NXG1 GenomeRNAi:54845 NextBio:57677
ArrayExpress:Q6NXG1 Bgee:Q6NXG1 CleanEx:HS_RBM35A
Genevestigator:Q6NXG1 Uniprot:Q6NXG1
Length = 681
Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP------VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELF 125
K + N++ RY+E+F
Sbjct: 506 QKCHKKNMKDRYVEVF 521
>UNIPROTKB|F1LP81 [details] [associations]
symbol:Esrp1 "Epithelial-splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 IPI:IPI00558323
Ensembl:ENSRNOT00000010846 ArrayExpress:F1LP81 Uniprot:F1LP81
Length = 681
Score = 131 (51.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF +++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
V +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 VRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSTDRAFMAA 505
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 506 QKYHKKTMKDRYVEVF 521
>UNIPROTKB|F1PQY5 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03015961 Ensembl:ENSCAFT00000014811 Uniprot:F1PQY5
Length = 521
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 168 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 227
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 228 RKHKDLLGKRYIELF 242
Score = 100 (40.3 bits), Expect = 0.00022, P = 0.00022
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 287 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 345
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 346 QKCHKKTMKDRYVEVF 361
>UNIPROTKB|F1P509 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0043484 "regulation
of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GeneTree:ENSGT00620000087828 OMA:VAAMTEC
EMBL:AADN02024878 IPI:IPI00596521 Ensembl:ENSGALT00000025730
Uniprot:F1P509
Length = 523
Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF V ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 244 VRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNAL 303
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 304 KKHKDLLGKRYIELF 318
>UNIPROTKB|F1PSN8 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:AAEX03015961
Ensembl:ENSCAFT00000014804 Uniprot:F1PSN8
Length = 634
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 285 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 344
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 345 RKHKDLLGKRYIELF 359
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 404 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 462
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 463 QKCHKKTMKDRYVEVF 478
>UNIPROTKB|F1MVN3 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 CTD:54845
GeneTree:ENSGT00620000087828 KO:K14947 OMA:VAAMTEC
EMBL:DAAA02039465 IPI:IPI00913393 RefSeq:NP_001179931.1
UniGene:Bt.62027 Ensembl:ENSBTAT00000037192 GeneID:538640
KEGG:bta:538640 NextBio:20877490 Uniprot:F1MVN3
Length = 677
Score = 129 (50.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 328 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 387
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 388 RKHKDLLGKRYIELF 402
Score = 100 (40.3 bits), Expect = 0.00030, P = 0.00030
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 447 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 505
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 506 QKCHKKTMKDRYVEVF 521
>UNIPROTKB|F1RY52 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:CU468309
Ensembl:ENSSSCT00000006690 Uniprot:F1RY52
Length = 711
Score = 129 (50.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++V FF P+ + + Y +GRP+G+A V FA E A A+
Sbjct: 358 VRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNAL 417
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 418 RKHKDLLGKRYIELF 432
Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 57 VHMRGLPFRVNEKDIVDF---FSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLP+ +DI+DF FS + V++ +N++ GRPSG+A + + + A A
Sbjct: 477 IRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQ-GRPSGDAFIQMKSADRAFMAA 535
Query: 111 SK-DRTNIRHRYIELF 125
K + ++ RY+E+F
Sbjct: 536 QKCHKKTMKDRYVEVF 551
>RGD|1310855 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1310855 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
eggNOG:NOG262593 HOGENOM:HOG000112401 OrthoDB:EOG49078K
EMBL:BC166804 IPI:IPI00359594 UniGene:Rn.231924
ProteinModelPortal:B2RYJ8 SMR:B2RYJ8 PhosphoSite:B2RYJ8
PRIDE:B2RYJ8 UCSC:RGD:1310855 ArrayExpress:B2RYJ8
Genevestigator:B2RYJ8 Uniprot:B2RYJ8
Length = 716
Score = 126 (49.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 349 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 408
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 409 RRHKGMLGKRYIELF 423
Score = 96 (38.9 bits), Expect = 0.00087, P = 0.00087
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + +
Sbjct: 458 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 516
Query: 103 HEDAMQAMSKDRTNI-RHRYIEL 124
E A+ A + + + RY+E+
Sbjct: 517 VERALAAAQRCHKKVMKERYVEV 539
>UNIPROTKB|G3V8M2 [details] [associations]
symbol:Esrp2 "Epithelial-splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 RGD:1310855 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473972
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
UniGene:Rn.231924 RefSeq:NP_001100893.1 PRIDE:G3V8M2
Ensembl:ENSRNOT00000026873 GeneID:307810 KEGG:rno:307810
NextBio:657907 Uniprot:G3V8M2
Length = 717
Score = 126 (49.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++DF P PV VD + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 410 RRHKGMLGKRYIELF 424
Score = 96 (38.9 bits), Expect = 0.00087, P = 0.00087
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 103 HEDAMQAMSKDRTNI-RHRYIEL 124
E A+ A + + + RY+E+
Sbjct: 518 VERALAAAQRCHKKVMKERYVEV 540
>UNIPROTKB|Q6DEZ7 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
SUPFAM:SSF53098 GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:P55795 EMBL:BC076946 RefSeq:NP_001005057.1
UniGene:Str.5962 ProteinModelPortal:Q6DEZ7 SMR:Q6DEZ7 PRIDE:Q6DEZ7
Ensembl:ENSXETT00000032125 GeneID:448608 KEGG:xtr:448608
Xenbase:XB-GENE-985138 InParanoid:Q6DEZ7 Bgee:Q6DEZ7 Uniprot:Q6DEZ7
Length = 687
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 389 KKHKELLGKRYIELF 403
>UNIPROTKB|Q7ZY29 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
CTD:54845 KO:K14947 EMBL:BC044002 RefSeq:NP_001079524.1
UniGene:Xl.14515 HSSP:P55795 ProteinModelPortal:Q7ZY29 SMR:Q7ZY29
PRIDE:Q7ZY29 GeneID:379211 KEGG:xla:379211 Xenbase:XB-GENE-985143
Uniprot:Q7ZY29
Length = 688
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
V MRGLPF ++++ FF PV + + Y + RP+G+A V FA E A A+
Sbjct: 329 VRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNAL 388
Query: 111 SKDRTNIRHRYIELF 125
K + + RYIELF
Sbjct: 389 KKHKELLGKRYIELF 403
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 122 (48.0 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 32 RPGGFAGP--RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYK 88
RP AG +P + E + P +TV +RG PF V EK++++F +P+ PV + I
Sbjct: 273 RPQEAAGKVEKPASQ--KEPTTP--YTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNA 328
Query: 89 NGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G +G V ++ E+ +A+ +R + RYIE+F
Sbjct: 329 HGNKTGYVFVDLSSEEEVKKALKCNREYMGGRYIEVF 365
>UNIPROTKB|E5RGH4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00982782
ProteinModelPortal:E5RGH4 SMR:E5RGH4 Ensembl:ENST00000521790
ArrayExpress:E5RGH4 Bgee:E5RGH4 Uniprot:E5RGH4
Length = 100
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 18 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 76
Query: 95 EADVYFATHEDAMQAMSKDRTNI 117
EA V FA+ E A +A+ K + I
Sbjct: 77 EAFVQFASQEIAEKALKKHKERI 99
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/95 (31%), Positives = 53/95 (55%)
Query: 32 RPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNG 90
RP AG ++ V++ +TV +RG PF V EK++++F +P+ PV + I +G
Sbjct: 272 RPQEAAGKV--EKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHG 329
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+G V ++ E+ +A+ +R + RYIE+F
Sbjct: 330 NKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVF 364
>UNIPROTKB|D6RIU0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967216
ProteinModelPortal:D6RIU0 SMR:D6RIU0 Ensembl:ENST00000504348
ArrayExpress:D6RIU0 Bgee:D6RIU0 Uniprot:D6RIU0
Length = 168
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHEDAMQA 109
EA V FA+ E A +A
Sbjct: 154 EAFVQFASQEIAEKA 168
>UNIPROTKB|D6RFM3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
HOGENOM:HOG000134241 IPI:IPI00965435 ProteinModelPortal:D6RFM3
SMR:D6RFM3 Ensembl:ENST00000513225 ArrayExpress:D6RFM3 Bgee:D6RFM3
Uniprot:D6RFM3
Length = 163
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 45 WVNESSGPGHHT------VHMRGLPFRVNEKDIVDFFS--PVVP--VYVDINYKNGRPSG 94
WV + +GP V +RGLPF ++++IV FFS +VP + + ++++ GR +G
Sbjct: 95 WVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQ-GRSTG 153
Query: 95 EADVYFATHE 104
EA V FA+ E
Sbjct: 154 EAFVQFASQE 163
>UNIPROTKB|D6R9T0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964846
ProteinModelPortal:D6R9T0 SMR:D6R9T0 Ensembl:ENST00000510431
HOGENOM:HOG000134241 ArrayExpress:D6R9T0 Bgee:D6R9T0 Uniprot:D6R9T0
Length = 162
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|D6RAM1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967835
ProteinModelPortal:D6RAM1 SMR:D6RAM1 Ensembl:ENST00000515158
ArrayExpress:D6RAM1 Bgee:D6RAM1 Uniprot:D6RAM1
Length = 130
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|D6RDU3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00968132
ProteinModelPortal:D6RDU3 SMR:D6RDU3 Ensembl:ENST00000506721
ArrayExpress:D6RDU3 Bgee:D6RDU3 Uniprot:D6RDU3
Length = 171
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|D6RIT2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
HOGENOM:HOG000134241 IPI:IPI00966932 ProteinModelPortal:D6RIT2
SMR:D6RIT2 Ensembl:ENST00000503105 ArrayExpress:D6RIT2 Bgee:D6RIT2
Uniprot:D6RIT2
Length = 164
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|D6RJ04 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00963924
ProteinModelPortal:D6RJ04 SMR:D6RJ04 Ensembl:ENST00000508103
ArrayExpress:D6RJ04 Bgee:D6RJ04 Uniprot:D6RJ04
Length = 172
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|E7EQJ0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00977852
ProteinModelPortal:E7EQJ0 SMR:E7EQJ0 Ensembl:ENST00000521116
ArrayExpress:E7EQJ0 Bgee:E7EQJ0 Uniprot:E7EQJ0
Length = 115
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>UNIPROTKB|D6RIH9 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00966018
ProteinModelPortal:D6RIH9 SMR:D6RIH9 Ensembl:ENST00000510678
ArrayExpress:D6RIH9 Bgee:D6RIH9 Uniprot:D6RIH9
Length = 184
Score = 109 (43.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIELF 125
A+ KDR + HRY+E+F
Sbjct: 67 VKLALKKDRETMGHRYVEVF 86
>FB|FBgn0023441 [details] [associations]
symbol:fus "fusilli" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0005634
GO:GO:0007173 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 HSSP:P55795 EMBL:AF321979
EMBL:BT025963 EMBL:BT003299 EMBL:BT023793 EMBL:AY052064
RefSeq:NP_524691.1 RefSeq:NP_725479.1 RefSeq:NP_725480.1
RefSeq:NP_725481.1 RefSeq:NP_725482.1 RefSeq:NP_725483.1
UniGene:Dm.7727 ProteinModelPortal:Q9BJZ5 SMR:Q9BJZ5
MINT:MINT-1023688 STRING:Q9BJZ5 PRIDE:Q9BJZ5
EnsemblMetazoa:FBtr0087343 EnsemblMetazoa:FBtr0087344
EnsemblMetazoa:FBtr0087346 GeneID:44095 KEGG:dme:Dmel_CG8205
UCSC:CG8205-RD CTD:2521 FlyBase:FBgn0023441 InParanoid:A1ZA30
OMA:KFRYIEV OrthoDB:EOG4866TJ PhylomeDB:Q9BJZ5 ChiTaRS:FUS
GenomeRNAi:44095 NextBio:836730 Bgee:Q9BJZ5 Uniprot:Q9BJZ5
Length = 967
Score = 119 (46.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYV-D-------INYKNGRPSGEADVYFATHEDA 106
+ MRGLP+ K ++DFF+ P +V D + +GR +G+A V FA DA
Sbjct: 382 IRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDA 441
Query: 107 MQAMSKDRTNIRHRYIELF 125
+A+ + R +I RYIELF
Sbjct: 442 PKALGRHRESIGQRYIELF 460
>POMBASE|SPBC106.12c [details] [associations]
symbol:SPBC106.12c "THO complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0000347 "THO complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0034243 "regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC106.12c GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 EMBL:CU329671 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0034243 GO:GO:0000347 KO:K12881
PIR:T39269 RefSeq:NP_595161.1 ProteinModelPortal:Q9URV0
EnsemblFungi:SPBC106.12c.1 GeneID:2540184 KEGG:spo:SPBC106.12c
eggNOG:NOG328157 OMA:NERTNGF OrthoDB:EOG4DV8WK NextBio:20801316
Uniprot:Q9URV0
Length = 274
Score = 109 (43.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSK-DR 114
V + L ++V EKD++ F P+ V +NY + GR G DVYF T +DA A
Sbjct: 87 VRVENLHYQVLEKDVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 115 TNIRHRYIEL 124
TN++ I++
Sbjct: 147 TNLKGSEIQI 156
>UNIPROTKB|F1MSN9 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VIKQKYE EMBL:DAAA02046691
IPI:IPI00699877 UniGene:Bt.94194 Ensembl:ENSBTAT00000005736
NextBio:20869663 Uniprot:F1MSN9
Length = 717
Score = 115 (45.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV D + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 410 RRHKGMLGKRYIELF 424
Score = 98 (39.6 bits), Expect = 0.00053, P = 0.00053
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPVV----P--VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F P V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIEL 124
E A+ A + + ++ RY+E+
Sbjct: 518 AERALAAAQRCHKKAMKERYVEV 540
>MGI|MGI:1924661 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924661 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
HSSP:P55795 CTD:80004 OMA:VIKQKYE OrthoDB:EOG49078K EMBL:BC031444
EMBL:AK020578 IPI:IPI00276878 RefSeq:NP_789808.1 UniGene:Mm.183003
ProteinModelPortal:Q8K0G8 SMR:Q8K0G8 STRING:Q8K0G8
PhosphoSite:Q8K0G8 PaxDb:Q8K0G8 PRIDE:Q8K0G8
Ensembl:ENSMUST00000115979 GeneID:77411 KEGG:mmu:77411
UCSC:uc009nff.1 InParanoid:Q8K0G8 NextBio:346885 Bgee:Q8K0G8
CleanEx:MM_RBM35B Genevestigator:Q8K0G8 Uniprot:Q8K0G8
Length = 717
Score = 115 (45.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV D + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 410 RRHKGMLGKRYIELF 424
Score = 96 (38.9 bits), Expect = 0.00087, P = 0.00087
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
+ G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + +
Sbjct: 459 AGGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMMS 517
Query: 103 HEDAMQAMSK-DRTNIRHRYIEL 124
E A+ A + + ++ RY+E+
Sbjct: 518 VERALAAAQRCHKKMMKERYVEV 540
>UNIPROTKB|Q9H6T0 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0005813
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
HOGENOM:HOG000112401 KO:K14947 HSSP:Q9Z2X1 CTD:80004 OMA:VIKQKYE
OrthoDB:EOG49078K EMBL:AK025571 EMBL:AK025901 EMBL:BC030146
EMBL:AF289577 IPI:IPI00034099 IPI:IPI00827597 RefSeq:NP_079215.2
UniGene:Hs.436585 UniGene:Hs.592053 ProteinModelPortal:Q9H6T0
SMR:Q9H6T0 IntAct:Q9H6T0 STRING:Q9H6T0 PhosphoSite:Q9H6T0
DMDM:74761482 PaxDb:Q9H6T0 PRIDE:Q9H6T0 Ensembl:ENST00000473183
Ensembl:ENST00000565858 GeneID:80004 KEGG:hsa:80004 UCSC:uc002evq.1
UCSC:uc010cfa.1 GeneCards:GC16M068263 HGNC:HGNC:26152 HPA:HPA048597
MIM:612960 neXtProt:NX_Q9H6T0 PharmGKB:PA164719361
InParanoid:Q9H6T0 ChiTaRS:ESRP2 GenomeRNAi:80004 NextBio:70079
Bgee:Q9H6T0 CleanEx:HS_RBM35B Genevestigator:Q9H6T0 Uniprot:Q9H6T0
Length = 727
Score = 115 (45.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV------YVDINYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV + + + +GRP+G+A FA E A A+
Sbjct: 360 LRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAAL 419
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 420 RRHKGMLGKRYIELF 434
Score = 97 (39.2 bits), Expect = 0.00069, P = 0.00069
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFATHE 104
G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + + E
Sbjct: 471 GTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTSAE 529
Query: 105 DAMQAMSKDRTNI-RHRYIEL 124
A+ A + + + RY+E+
Sbjct: 530 RALAAAQRCHKKVMKERYVEV 550
>UNIPROTKB|F1PA85 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
EMBL:AAEX03004121 RefSeq:XP_851504.1 Ensembl:ENSCAFT00000032365
GeneID:489745 KEGG:cfa:489745 Uniprot:F1PA85
Length = 717
Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY--VD----INYKNGRPSGEADVYFATHEDAMQAM 110
+ +RGLPF D++ F P PV D + + +GRP+G+A FA E A A+
Sbjct: 350 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 409
Query: 111 SKDRTNIRHRYIELF 125
+ + + RYIELF
Sbjct: 410 RRHKGILGKRYIELF 424
Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFF----SPVVP--VYVDINYKNGRPSGEADVYFAT 102
++G G V +RGLP+ +DI+ F + + P V++ +N + GRPSG+A + +
Sbjct: 459 AAGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLN-QQGRPSGDAFIQMTS 517
Query: 103 HEDAMQAMSKDRTNI-RHRYIEL 124
E A+ A + + + RY+E+
Sbjct: 518 AERALAAAQRCHKKVMKERYVEV 540
>UNIPROTKB|E7EN40 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00981333
ProteinModelPortal:E7EN40 SMR:E7EN40 Ensembl:ENST00000523137
ArrayExpress:E7EN40 Bgee:E7EN40 Uniprot:E7EN40
Length = 166
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIE 123
A+ KDR + HRY+E
Sbjct: 67 VKLALKKDRETMGHRYVE 84
Score = 95 (38.5 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 78 VVP--VYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELF 125
+VP + + ++++ GR +GEA V FA+ E A +A+ K + I HRYIE+F
Sbjct: 88 IVPNGITLPVDFQ-GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 136
>UNIPROTKB|D6RDL0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HOGENOM:HOG000220896 HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964237
ProteinModelPortal:D6RDL0 SMR:D6RDL0 Ensembl:ENST00000515714
ArrayExpress:D6RDL0 Bgee:D6RDL0 Uniprot:D6RDL0
Length = 84
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 51 GPGHHTVHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY---KNGRPSGEADVYFATHED 105
G G V +RGLP+ + ++ FFS + I + + GRPSGEA V + ++
Sbjct: 8 GEGF-VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDE 66
Query: 106 AMQAMSKDRTNIRHRYIE 123
A+ KDR + HRY+E
Sbjct: 67 VKLALKKDRETMGHRYVE 84
>UNIPROTKB|F1P982 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AAEX03013911 Ensembl:ENSCAFT00000013161
Uniprot:F1P982
Length = 945
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 33 PGGFAGPRP----GDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI 85
PG GP P G SSG PG + ++ +PF V+ +I+DFF V+P V +
Sbjct: 842 PGPGPGPGPIHIGGPPGFGSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 901
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
Y + G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 902 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 944
Score = 99 (39.9 bits), Expect = 0.00058, P = 0.00058
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 514 KQYMGNRFIQV 524
>UNIPROTKB|I3LLW0 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:CU210870 EMBL:CU914282 Ensembl:ENSSSCT00000023753
Ensembl:ENSSSCT00000028045 Uniprot:I3LLW0
Length = 955
Score = 112 (44.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 33 PGGFAGPRP----GDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI 85
PG GP P G SSG PG + ++ +PF V+ +I+DFF V+P V +
Sbjct: 852 PGPGPGPGPIHIGGPPGFGSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 911
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
Y + G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 912 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 954
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 454 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 513
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 514 KQYMGNRFIQV 524
>MGI|MGI:1922960 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1922960 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL833786 UniGene:Mm.27660
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AF345334 EMBL:AF393215 EMBL:AF393216 EMBL:AK017591
EMBL:AK029180 EMBL:AK035014 EMBL:AK080772 EMBL:AK166833
EMBL:BC026891 EMBL:BC027810 EMBL:BC052473 IPI:IPI00322263
RefSeq:NP_083673.3 RefSeq:NP_733486.2 UniGene:Mm.441281 PDB:2CQP
PDBsum:2CQP ProteinModelPortal:Q8R4X3 SMR:Q8R4X3 IntAct:Q8R4X3
STRING:Q8R4X3 PhosphoSite:Q8R4X3 PRIDE:Q8R4X3
Ensembl:ENSMUST00000059647 Ensembl:ENSMUST00000109604 GeneID:75710
KEGG:mmu:75710 UCSC:uc008nmh.1 InParanoid:Q3TKT7 ChiTaRS:RBM12
EvolutionaryTrace:Q8R4X3 NextBio:343756 Bgee:Q8R4X3
CleanEx:MM_RBM12 Genevestigator:Q8R4X3
GermOnline:ENSMUSG00000038171 Uniprot:Q8R4X3
Length = 992
Score = 104 (41.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 33 PGGFAGPRPGDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-K 88
P GP PG SSG PG + ++ +PF V+ +I+DFF V+P V + Y +
Sbjct: 897 PIHIGGP-PG---FGASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 952
Query: 89 NGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 953 KGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 991
Score = 98 (39.6 bits), Expect = 0.00078, P = 0.00078
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 32 (16.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 33 PGGFAGP 39
PG F GP
Sbjct: 789 PGNFGGP 795
>UNIPROTKB|D4A116 [details] [associations]
symbol:Rbm12 "Protein Rbm12" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC118414 IPI:IPI00560597 Ensembl:ENSRNOT00000026700
ArrayExpress:D4A116 Uniprot:D4A116
Length = 1003
Score = 104 (41.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 33 PGGFAGPRPGDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-K 88
P GP PG SSG PG + ++ +PF V+ +I+DFF V+P V + Y +
Sbjct: 908 PIHIGGP-PG---FGASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 963
Query: 89 NGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 964 KGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 1002
Score = 98 (39.6 bits), Expect = 0.00079, P = 0.00079
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 32 (16.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 33 PGGFAGP 39
PG F GP
Sbjct: 800 PGNFGGP 806
>RGD|1594333 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH474050 eggNOG:NOG299235
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AC118414 EMBL:AY226099 IPI:IPI00421433
RefSeq:NP_001032746.1 UniGene:Rn.7119 SMR:Q6XLI7
Ensembl:ENSRNOT00000047246 GeneID:652928 KEGG:rno:652928
UCSC:RGD:1594333 HOGENOM:HOG000143525 InParanoid:Q6XLI7
NextBio:714873 Genevestigator:Q6XLI7 Uniprot:Q6XLI7
Length = 1032
Score = 104 (41.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 33 PGGFAGPRPGDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-K 88
P GP PG SSG PG + ++ +PF V+ +I+DFF V+P V + Y +
Sbjct: 937 PIHIGGP-PG---FGASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 992
Query: 89 NGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 993 KGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 1031
Score = 98 (39.6 bits), Expect = 0.00082, P = 0.00082
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
Score = 32 (16.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 33 PGGFAGP 39
PG F GP
Sbjct: 829 PGNFGGP 835
>UNIPROTKB|Q9NTZ6 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CH471077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL109827 UniGene:Hs.700188 GermOnline:ENSG00000125976
eggNOG:NOG299235 HOVERGEN:HBG057691 EMBL:AJ289772 EMBL:AF345332
EMBL:AF345335 EMBL:AF393214 EMBL:AB018308 EMBL:AK092239
EMBL:BC012787 EMBL:BC013981 EMBL:AL834472 EMBL:AB015336
IPI:IPI00550308 RefSeq:NP_001185767.1 RefSeq:NP_001185769.1
RefSeq:NP_006038.2 RefSeq:NP_690051.1 PDB:1WEL PDB:2CPY PDB:2DNN
PDB:2EK1 PDB:2EK6 PDBsum:1WEL PDBsum:2CPY PDBsum:2DNN PDBsum:2EK1
PDBsum:2EK6 ProteinModelPortal:Q9NTZ6 SMR:Q9NTZ6 IntAct:Q9NTZ6
MINT:MINT-1366084 STRING:Q9NTZ6 PhosphoSite:Q9NTZ6 DMDM:30173387
PaxDb:Q9NTZ6 PeptideAtlas:Q9NTZ6 PRIDE:Q9NTZ6 DNASU:10137
Ensembl:ENST00000359646 Ensembl:ENST00000374104
Ensembl:ENST00000374114 GeneID:10137 KEGG:hsa:10137 UCSC:uc002xdq.3
CTD:10137 GeneCards:GC20M034236 HGNC:HGNC:9898 HPA:HPA043258
HPA:HPA043621 MIM:607179 neXtProt:NX_Q9NTZ6 PharmGKB:PA34261
InParanoid:Q9NTZ6 OMA:PVFLGPL OrthoDB:EOG44TP7C PhylomeDB:Q9NTZ6
EvolutionaryTrace:Q9NTZ6 GenomeRNAi:10137 NextBio:38349
ArrayExpress:Q9NTZ6 Bgee:Q9NTZ6 CleanEx:HS_RBM12
Genevestigator:Q9NTZ6 Uniprot:Q9NTZ6
Length = 932
Score = 111 (44.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 33 PGGFAGPRPGDRWVN------ESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYV 83
PG GP PG + SSG PG + ++ +PF V+ +I+DFF V+P V
Sbjct: 827 PGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV 886
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
+ Y + G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 887 CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 931
Score = 99 (39.9 bits), Expect = 0.00057, P = 0.00057
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
>UNIPROTKB|F1MND5 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 CTD:10137 OMA:PVFLGPL
EMBL:DAAA02036525 IPI:IPI00924418 RefSeq:NP_001185821.1
UniGene:Bt.91136 Ensembl:ENSBTAT00000061188 GeneID:100138139
KEGG:bta:100138139 NextBio:20789665 Uniprot:F1MND5
Length = 953
Score = 111 (44.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 33 PGGFAGPRP----GDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI 85
PG GP P G SSG PG + ++ +PF V+ +I+DFF V+P V +
Sbjct: 850 PGPGPGPGPIHIGGPPGFGSSSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 909
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAMS--KDRTNIRHRYIELFL 126
Y + G P+GEA V F + ++A A+ DR I R ++L L
Sbjct: 910 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSRKVKLVL 952
Score = 99 (39.9 bits), Expect = 0.00058, P = 0.00058
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
>UNIPROTKB|F1NVJ4 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AADN02024868 IPI:IPI00599613 Ensembl:ENSGALT00000025676
ArrayExpress:F1NVJ4 Uniprot:F1NVJ4
Length = 415
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 35/106 (33%), Positives = 56/106 (52%)
Query: 30 NDRPGGFAGPRPGDRWV---NESSGPGHHT-VHMRGLPFRVNEKDIVDFFSP--VVPVYV 83
N++ G F P R++ N S G + ++ LPF+ +I+DFF V+P V
Sbjct: 314 NNKMGNF----PEGRFMPDPNFSGGSDRIVPIRLKNLPFKATPNEILDFFYGYRVIPESV 369
Query: 84 DINY-KNGRPSGEADVYFATHEDAMQAMSK--DRTNIRHRYIELFL 126
+ Y + G PSG+A V +E+AM A+++ DR I R ++L L
Sbjct: 370 SVQYNEQGLPSGDAIVAMTNYEEAMTAINELNDRP-IGPRKVKLSL 414
>UNIPROTKB|J9NZV3 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03013911 Ensembl:ENSCAFT00000048972 Uniprot:J9NZV3
Length = 888
Score = 109 (43.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 31/86 (36%), Positives = 46/86 (53%)
Query: 33 PGGFAGPRP----GDRWVNESSG-PGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDI 85
PG GP P G SSG PG + ++ +PF V+ +I+DFF V+P V +
Sbjct: 778 PGPGPGPGPIHIGGPPGFGSSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCL 837
Query: 86 NY-KNGRPSGEADVYFATHEDAMQAM 110
Y + G P+GEA V F + ++A A+
Sbjct: 838 KYNEKGMPTGEAMVAFESRDEATAAV 863
Score = 99 (39.9 bits), Expect = 0.00054, P = 0.00054
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMSKD 113
V+++GLPF K ++DFF +V + I Y NG+ +GE V F D A+ +
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 114 RTNIRHRYIEL 124
+ + +R+I++
Sbjct: 492 KQYMGNRFIQV 502
>UNIPROTKB|F1NNR6 [details] [associations]
symbol:LOC100858337 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AADN02019509 EMBL:AADN02019510 IPI:IPI00571732
Ensembl:ENSGALT00000002400 Uniprot:F1NNR6
Length = 868
Score = 108 (43.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 33 PGGF--AGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY- 87
PG +GP PG + S PG + ++ +PF V+ +I+DFF V+P V + Y
Sbjct: 783 PGNIHISGP-PG--FGTGSGKPGPTVIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYN 839
Query: 88 KNGRPSGEADVYFATHEDAMQAM 110
+ G P+GEA V F + ++AM A+
Sbjct: 840 EKGMPTGEAMVAFESRDEAMAAV 862
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 98 (39.6 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 40 RPGDRWVNESSGPGHHTVHMRGLPFRVNE-KDIVDFFSPVVPVYVDINYKNGRPSGEADV 98
RP R +ESSGP + L R N+ +D + F P+ +Y+ NY G P G V
Sbjct: 35 RPSSR-DHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFV 93
Query: 99 YFATHEDAMQAMSK 112
+ EDA +AM +
Sbjct: 94 KYRYAEDAAEAMKR 107
>UNIPROTKB|E5RHG1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982580 ProteinModelPortal:E5RHG1
SMR:E5RHG1 Ensembl:ENST00000520560 ArrayExpress:E5RHG1 Bgee:E5RHG1
Uniprot:E5RHG1
Length = 122
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGGF 63
Query: 117 IRHRYIELFLN 127
I+ +ELFL+
Sbjct: 64 IKDSSVELFLS 74
>UNIPROTKB|E5RJ83 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982018 ProteinModelPortal:E5RJ83
SMR:E5RJ83 Ensembl:ENST00000518597 ArrayExpress:E5RJ83 Bgee:E5RJ83
Uniprot:E5RJ83
Length = 143
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGGF 63
Query: 117 IRHRYIELFLN 127
I+ +ELFL+
Sbjct: 64 IKDSSVELFLS 74
>UNIPROTKB|E5RJV8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00981453 ProteinModelPortal:E5RJV8
SMR:E5RJV8 Ensembl:ENST00000519109 ArrayExpress:E5RJV8 Bgee:E5RJV8
Uniprot:E5RJV8
Length = 149
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGGF 63
Query: 117 IRHRYIELFLN 127
I+ +ELFL+
Sbjct: 64 IKDSSVELFLS 74
>UNIPROTKB|E5RJW8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00980861 ProteinModelPortal:E5RJW8
SMR:E5RJW8 Ensembl:ENST00000521947 ArrayExpress:E5RJW8 Bgee:E5RJW8
Uniprot:E5RJW8
Length = 82
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ + GLPF DI FF+ + ++ G GEA + FAT EDA +A+S+
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGE-IGEAFIIFATDEDARRAISRSGGF 63
Query: 117 IRHRYIELFLN 127
I+ +ELFL+
Sbjct: 64 IKDSSVELFLS 74
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDI-NYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV +RG PF V E+ + +F P+ PV + +GR SG V + + +A+ D+
Sbjct: 291 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 350
Query: 115 TNIRHRYIELF 125
+ RYIE+F
Sbjct: 351 DYMGGRYIEVF 361
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHED 105
E+S P HTV +RG P V E+ I +FFSP+ P+ + + KN G+ +G V + +
Sbjct: 290 EASTP--HTVKLRGAPLNVTEQKIREFFSPLKPLAIRMG-KNTQGKSTGFIFVDLKSEAE 346
Query: 106 AMQAMSKDRTNIRHRYIEL 124
+A+ + + I +Y+E+
Sbjct: 347 VQKALKRKKEYIGGQYVEV 365
>ZFIN|ZDB-GENE-081022-16 [details] [associations]
symbol:rbm12 "RNA binding motif protein 12"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-081022-16 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG057691 CTD:10137 HOGENOM:HOG000143525
EMBL:BC162102 EMBL:BC162473 EMBL:AY226101 IPI:IPI00483025
RefSeq:NP_001003856.1 UniGene:Dr.133225 SMR:Q6XLI5 GeneID:445379
KEGG:dre:445379 NextBio:20832083 Uniprot:Q6XLI5
Length = 876
Score = 104 (41.7 bits), Expect = 0.00016, P = 0.00016
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 50 SGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN-GRPSGEADVYFATHEDAMQ 108
+ P VH+ GLPF V E +I DFF + + + N GR SG A V F + ++ +
Sbjct: 297 TNPDDFYVHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFE 356
Query: 109 AMSKDRTNIRHRYIEL 124
A+ ++ I RYIE+
Sbjct: 357 ALKRNAGMIGQRYIEV 372
Score = 104 (41.7 bits), Expect = 0.00016, P = 0.00016
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 35 GFAGPRP-GDRWVNES-SGPGHHT---VHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY 87
G G RP D S GPG+ V ++ +PF V +I+DFF V+P V + +
Sbjct: 775 GNQGQRPPSDNLRGPSPGGPGNSRPTIVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQF 834
Query: 88 KN-GRPSGEADVYFATHEDAMQAM 110
+ G P+GEA V F +H++AM A+
Sbjct: 835 SDKGLPTGEAMVAFDSHDEAMAAV 858
>TAIR|locus:2151779 [details] [associations]
symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
Length = 288
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV--YVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+H+ L V +DI + FS + V Y I+Y KNGRPSG A+V + DA QA+ K
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYA-IHYDKNGRPSGTAEVVYPRRSDAFQALKK 152
>WB|WBGene00011279 [details] [associations]
symbol:asd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240 EMBL:Z36238
EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1 UniGene:Cel.17456
SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a GeneID:175542
KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a OMA:QRRFAPY
NextBio:888594 Uniprot:G5EEW7
Length = 404
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 38 GP-RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYKNGRPSGE 95
GP P DR + SS G +H+ +PF+ E D+ F V PV V+I + G
Sbjct: 82 GPVAPNDRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGF 141
Query: 96 ADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126
V +DA +A ++ + T I R +E+ L
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>UNIPROTKB|G5EEW7 [details] [associations]
symbol:asd-1 "RNA-binding protein ASD-1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00390000013767 KO:K14946 HSSP:P33240
EMBL:Z36238 EMBL:DQ485531 PIR:T24255 RefSeq:NP_497841.1
UniGene:Cel.17456 SMR:G5EEW7 IntAct:G5EEW7 EnsemblMetazoa:R74.5a
GeneID:175542 KEGG:cel:CELE_R74.5 CTD:175542 WormBase:R74.5a
OMA:QRRFAPY NextBio:888594 Uniprot:G5EEW7
Length = 404
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 38 GP-RPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYKNGRPSGE 95
GP P DR + SS G +H+ +PF+ E D+ F V PV V+I + G
Sbjct: 82 GPVAPNDRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGF 141
Query: 96 ADVYFATHEDAMQAMSK-DRTNIRHRYIELFL 126
V +DA +A ++ + T I R +E+ L
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNL 173
>UNIPROTKB|B9ZVT1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010834 HOGENOM:HOG000231575
HGNC:HGNC:32310 IPI:IPI00217626 ProteinModelPortal:B9ZVT1
SMR:B9ZVT1 PRIDE:B9ZVT1 Ensembl:ENST00000517700 ArrayExpress:B9ZVT1
Bgee:B9ZVT1 Uniprot:B9ZVT1
Length = 881
Score = 102 (41.0 bits), Expect = 0.00026, P = 0.00025
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 219 GSRFIEV 225
Score = 99 (39.9 bits), Expect = 0.00053, P = 0.00053
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 51 GPGHHT-VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDA 106
G G T + + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +A
Sbjct: 800 GSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEA 859
Query: 107 MQAMSKD 113
M A+ KD
Sbjct: 860 MAAI-KD 865
>UNIPROTKB|Q8IXT5 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG299235 EMBL:AC010834 HOGENOM:HOG000231575
HOVERGEN:HBG057691 OMA:EHFRRPP OrthoDB:EOG4NKBVV IPI:IPI00871780
RefSeq:NP_976324.2 UniGene:Hs.606916 HSSP:Q9NTZ6
ProteinModelPortal:Q8IXT5 SMR:Q8IXT5 IntAct:Q8IXT5 STRING:Q8IXT5
PhosphoSite:Q8IXT5 DMDM:215273872 PaxDb:Q8IXT5 PRIDE:Q8IXT5
Ensembl:ENST00000399300 GeneID:389677 KEGG:hsa:389677
UCSC:uc003yfz.3 CTD:389677 GeneCards:GC08M094813 H-InvDB:HIX0025665
HGNC:HGNC:32310 HPA:HPA024398 neXtProt:NX_Q8IXT5
PharmGKB:PA142671098 GenomeRNAi:389677 NextBio:103029
ArrayExpress:Q8IXT5 Bgee:Q8IXT5 CleanEx:HS_RBM12B
Genevestigator:Q8IXT5 Uniprot:Q8IXT5
Length = 1001
Score = 102 (41.0 bits), Expect = 0.00030, P = 0.00030
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 218
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 219 GSRFIEV 225
Score = 99 (39.9 bits), Expect = 0.00062, P = 0.00062
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 51 GPGHHT-VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDA 106
G G T + + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +A
Sbjct: 920 GSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEA 979
Query: 107 MQAMSKD 113
M A+ KD
Sbjct: 980 MAAI-KD 985
>MGI|MGI:1924854 [details] [associations]
symbol:Rbm12b2 "RNA binding motif protein 12 B2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1924854 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
HOGENOM:HOG000231575 HOVERGEN:HBG057691 OrthoDB:EOG4NKBVV
EMBL:AK080943 EMBL:AK169895 EMBL:AL772167 EMBL:BC030408
EMBL:BC080741 IPI:IPI00471450 IPI:IPI00828825 RefSeq:NP_945195.1
UniGene:Mm.474129 UniGene:Mm.483494 ProteinModelPortal:Q66JV4
SMR:Q66JV4 STRING:Q66JV4 PhosphoSite:Q66JV4 PRIDE:Q66JV4
Ensembl:ENSMUST00000063839 Ensembl:ENSMUST00000095143 GeneID:77604
KEGG:mmu:77604 UCSC:uc008san.2 CTD:77604 InParanoid:A2AJP4
NextBio:347196 Bgee:Q66JV4 CleanEx:MM_C430048L16RIK
Genevestigator:Q66JV4 Uniprot:Q66JV4
Length = 834
Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 218 GSRFIEV 224
>MGI|MGI:1919647 [details] [associations]
symbol:Rbm12b1 "RNA binding motif protein 12 B1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919647 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL929413 EMBL:AK013872 EMBL:AK031339 EMBL:BC050844
EMBL:BC054081 IPI:IPI00134417 RefSeq:NP_082502.2 UniGene:Mm.430709
UniGene:Mm.490798 ProteinModelPortal:Q80YR9 SMR:Q80YR9
STRING:Q80YR9 PhosphoSite:Q80YR9 PRIDE:Q80YR9
Ensembl:ENSMUST00000050069 Ensembl:ENSMUST00000069128 GeneID:72397
KEGG:mmu:72397 UCSC:uc008sam.1 CTD:72397 HOGENOM:HOG000231575
HOVERGEN:HBG057691 InParanoid:B1AZ74 OMA:EHFRRPP OrthoDB:EOG4NKBVV
NextBio:336186 Bgee:Q80YR9 Genevestigator:Q80YR9 Uniprot:Q80YR9
Length = 836
Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 218 GSRFIEV 224
>RGD|1593040 [details] [associations]
symbol:LOC679087 "similar to swan" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1593040
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 OrthoDB:EOG4NKBVV CTD:389677
IPI:IPI00765757 RefSeq:XP_001053414.1 RefSeq:XP_232819.3
ProteinModelPortal:D3ZM54 Ensembl:ENSRNOT00000061333 GeneID:313069
KEGG:rno:313069 NextBio:665610 Uniprot:D3ZM54
Length = 843
Score = 101 (40.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 158 LRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFM 217
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 218 GSRFIEV 224
Score = 100 (40.3 bits), Expect = 0.00040, P = 0.00040
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTN 116
+ ++GLPF DI FF + ++ G+ +GEA + FAT EDA +A+S+
Sbjct: 5 IRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVIGGK-AGEAFIIFATDEDARRAISRSGGF 63
Query: 117 IRHRYIELFLN 127
I+ +ELFL+
Sbjct: 64 IKDSSVELFLS 74
Score = 97 (39.2 bits), Expect = 0.00083, P = 0.00083
Identities = 32/84 (38%), Positives = 44/84 (52%)
Query: 34 GGFA-GPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFS--PVVPVYVDINY-KN 89
G F+ G D +N SG G V + LPF+ N +I+DFF V+P V I Y +
Sbjct: 746 GCFSEGKVASDLNLNCRSG-GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEE 804
Query: 90 GRPSGEADVYFATHEDAMQAMSKD 113
G P GEA V + +A+ A+ KD
Sbjct: 805 GLPLGEAIVAMTNYNEALAAV-KD 827
>UNIPROTKB|E1B7G5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:DAAA02039473 IPI:IPI00687016
RefSeq:XP_002692866.1 RefSeq:XP_881008.3 Ensembl:ENSBTAT00000017837
GeneID:506017 KEGG:bta:506017 NextBio:20867413 Uniprot:E1B7G5
Length = 984
Score = 101 (40.6 bits), Expect = 0.00037, P = 0.00037
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 219 GSRFIEV 225
Score = 97 (39.2 bits), Expect = 0.00099, P = 0.00099
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS-- 111
+ + LPF+ N +I+DFF ++P V I Y + G P+GEA V + +AM A+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 112 KDRTNIRHRYIELFL 126
DR + R ++L L
Sbjct: 970 NDRP-VGPRKVKLIL 983
>UNIPROTKB|F1RY40 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:CU633952 RefSeq:XP_003125614.1
UniGene:Ssc.32661 Ensembl:ENSSSCT00000006702 GeneID:100514101
KEGG:ssc:100514101 Uniprot:F1RY40
Length = 986
Score = 101 (40.6 bits), Expect = 0.00037, P = 0.00037
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 219 GSRFIEV 225
Score = 98 (39.6 bits), Expect = 0.00078, P = 0.00078
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 57 VHMRGLPFRVNEKDIVDFFSP--VVPVYVDINY-KNGRPSGEADVYFATHEDAMQAMS-- 111
+ + LPF+ N +I+DFF V+P V I Y + G P+GEA V + +AM A+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 112 KDRTNIRHRYIELFL 126
DR + R ++L L
Sbjct: 972 NDRP-VGPRKVKLIL 985
>UNIPROTKB|E2RRS5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:AAEX03015951 RefSeq:XP_544177.3
Ensembl:ENSCAFT00000014490 GeneID:487048 KEGG:cfa:487048
NextBio:20860720 Uniprot:E2RRS5
Length = 994
Score = 101 (40.6 bits), Expect = 0.00038, P = 0.00038
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 59 MRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKDRTNI 117
+RGLP+ VNE D+ FFS + V + + + +GR +G+A V FA+ DA + R+ +
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFM 218
Query: 118 RHRYIEL 124
R+IE+
Sbjct: 219 GSRFIEV 225
>TAIR|locus:2205293 [details] [associations]
symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
Genevestigator:Q94EH8 Uniprot:Q94EH8
Length = 295
Score = 94 (38.1 bits), Expect = 0.00040, P = 0.00040
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV--YVDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
TV++ L V +DI + ++ + + Y I+Y KNGRPSG A+V + DA+QAM K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYA-IHYDKNGRPSGSAEVVYMRRSDAIQAMRK 166
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 89 (36.4 bits), Expect = 0.00080, P = 0.00079
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 31 DRPGGFAGPRP-GDRWVNE------SSGPGHHT---VHMRGLPFRVNEKDIVDFFSPVVP 80
+RP ++ P+P D+W ++ G G T + + L F V++ DI + F+
Sbjct: 41 NRPAPYSRPKPLPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGT 100
Query: 81 VY-VDINY-KNGRPSGEADVYFATHEDAMQAMSK 112
+ ++Y ++GR G ADV+F DA++AM +
Sbjct: 101 LKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 134
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 94 (38.1 bits), Expect = 0.00086, P = 0.00086
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 33 PGGFAGPR-PGDRWVN--ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVY-VDINYK 88
PG AGP P + + + S G +T+++R LP+ D+VD FS + V +I Y+
Sbjct: 356 PGFDAGPSVPPNPFTDYATSGGEKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYE 415
Query: 89 -NGRPSGEADVYFATHEDAMQAMSK 112
NGR G V F + A +++K
Sbjct: 416 PNGRSRGTGVVQFDNADTAETSIAK 440
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 152 113 0.00091 102 3 11 22 0.48 30
29 0.44 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 146
No. of states in DFA: 565 (60 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.32u 0.08s 13.40t Elapsed: 00:00:05
Total cpu time: 13.35u 0.08s 13.43t Elapsed: 00:00:05
Start: Thu Aug 15 14:51:47 2013 End: Thu Aug 15 14:51:52 2013
WARNINGS ISSUED: 1