RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3068
(152 letters)
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 55.1 bits (132), Expect = 2e-11
Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
H VHMRGLP+R E DI +FFSP+ +GR +GEADV FATHEDA+ AM+KD
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 75
Query: 114 RTNIRHRYIELFLNSSSPRGGVGGS 138
+ N++HRY+ELFLNS++ G G S
Sbjct: 76 KANMQHRYVELFLNSTAGTSGSGPS 100
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.2 bits (119), Expect = 1e-09
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATH 103
N V +RGLPF ++++IV FFS + V + GR +GEA V FA+
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67
Query: 104 EDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
E A +A+ K + I HRYIE+F +S + G S
Sbjct: 68 EIAEKALKKHKERIGHRYIEIFKSSRAEVRTSGPS 102
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 50.3 bits (119), Expect = 2e-09
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 39 PRPGDRWVNESSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGE 95
P R + S V+++GLPF K ++DFF V NG+ +GE
Sbjct: 3 PSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE 62
Query: 96 ADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPR 132
V F D A+ + + + +R+I++ + +
Sbjct: 63 GFVEFRNEADYKAALCRHKQYMGNRFIQVHP--ITKK 97
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 48.1 bits (114), Expect = 6e-09
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEADVYFATHED 105
S PG + ++ +PF V+ +I+DFF + + G P+GEA V F + ++
Sbjct: 4 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDE 63
Query: 106 AMQAMSK-DRTNIRHRYIELFL 126
A A+ + I R ++L L
Sbjct: 64 ATAAVIDLNDRPIGSRKVKLVL 85
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 46.5 bits (110), Expect = 2e-08
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
+ + GL ++ ++ + ++F V V + R G V F + +++
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
Query: 114 RTNIRHRYIE 123
R + + I+
Sbjct: 63 RHELDSKTID 72
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.2 bits (109), Expect = 4e-08
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSP---VVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
TV L R+ +D+ DFFS V V + + + R G A V F + A+
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 79
Query: 113 DRTNIRHRYIE 123
+ I
Sbjct: 80 TGQRLLGVPII 90
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 45.8 bits (108), Expect = 5e-08
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114
T+ + L F + E ++ + F + + + ++G+ G A + F + DA + + +
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75
Query: 115 TNIRHRYIELFLNSSSPRGGVGG 137
I R + L + +GG G
Sbjct: 76 AEIDGRSVS--LYYTGEKGGTRG 96
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 46.0 bits (108), Expect = 6e-08
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 56 TVHMRGLPFRVNEKDI---VDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
H+ +PF + + D+ ++ + NG+ G+A V F +DA ++
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
Query: 113 DRTNIRHRYIELFLNSSSPRGGVGGSGFSRS 143
R + R + + + + + ++
Sbjct: 70 HRKKLNGREAFVHVVTLEDMREIEKNPPAQG 100
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 44.9 bits (106), Expect = 1e-07
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN----GRPSGEADVYFATHEDAMQAMS 111
+ +R +PF+ N+++I + FS + K G G V F T +DA +A +
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 112 K--DRTNIRHRYIEL 124
T++ R + L
Sbjct: 70 ALCHSTHLYGRRLVL 84
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 44.6 bits (105), Expect = 3e-07
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114
+++R LP+++ +++ D F P+ G A V + DA A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSG 68
Query: 115 TNIRHRYI 122
N+ +RY+
Sbjct: 69 FNVCNRYL 76
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 42.2 bits (99), Expect = 9e-07
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
++++ L V E + + FS P++ + V + R G A V F DA +A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 113 -DRTNIRHRYIEL 124
+ I+ + + +
Sbjct: 62 MNFDVIKGKPVRI 74
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 41.5 bits (97), Expect = 1e-06
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPV---YVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
+ + GL + +KD+ D+FS V + ++ GR G V F E + M +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 114 RTNIRHRYIE 123
+ + I+
Sbjct: 62 EHKLNGKVID 71
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 41.6 bits (97), Expect = 2e-06
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + GL F ++ + F V + R G V +AT E+ AM+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 113 DRTNIRHRYIE 123
+ R +E
Sbjct: 68 RPHKVDGRVVE 78
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 41.1 bits (96), Expect = 3e-06
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+++ LP + + + F +V + + GRP G A V + E+A +A+S
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 67
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 40.7 bits (95), Expect = 3e-06
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
+ + GL E+ I ++F V + + ++ K + G + F E + M K
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 114 RTNIRHRYIE 123
N+ E
Sbjct: 62 YHNVGLSKCE 71
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 40.5 bits (94), Expect = 4e-06
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN--GRPSGEADVYFATHEDAMQAMS 111
+ +V+++G P DI ++ V + G V F + E A + +
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 65
Query: 112 KDRTNIRHRYIE 123
+ +
Sbjct: 66 TPGQKYKETDLL 77
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 40.4 bits (94), Expect = 5e-06
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 60 RGLPFRVNEKDIVDFFSPVVPVYVDI------NYKNGRPSGEADVYFATHEDAMQAMSK- 112
+ L F E+ + FS V + G V + E A +A+ +
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 63
Query: 113 DRTNIRHRYIELFLNSSSPR 132
+ +E+ ++ + +
Sbjct: 64 QGHTVDGHKLEVRISERATK 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 40.1 bits (93), Expect = 6e-06
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATH 103
N ++ + + + GL E+D+ + FS P+ V + + ++ R G A VYF
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 104 EDAMQAMSK-DRTNIRHRYIE 123
+DA +A + + + R I
Sbjct: 62 DDAKEAKERANGMELDGRRIR 82
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 40.0 bits (93), Expect = 7e-06
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVY-FATHED 105
N S +H+ +PFR + D+ F + N R S F D
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 106 AMQAMSK-DRTNIRHRYIE 123
A +A K T + R IE
Sbjct: 64 ADRAREKLHGTVVEGRKIE 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 9e-06
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 46 VNESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHED 105
V S P + TV+ G+ + ++ + FSP + + G + V F+THE
Sbjct: 10 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ---IMEIRVFPEKGYSFVRFSTHES 66
Query: 106 AMQAMSK-DRTNIRHRYIELFLNSSSP 131
A A+ + T I ++ + SP
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWGKESP 93
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.1 bits (95), Expect = 9e-06
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + GL F ++ + F + V + R G V +AT E+ AM+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 113 DRTNIRHRYIE 123
+ R +E
Sbjct: 68 RPHKVDGRVVE 78
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 39.2 bits (91), Expect = 1e-05
Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + LP + ++++ F P+ + +YK G G A V F + D+ +A+
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 113 -DRTNIRHRYIEL 124
+ +R++ +++
Sbjct: 64 LNGITVRNKRLKV 76
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.9 bits (90), Expect = 1e-05
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSKD 113
+ + GL +D+ +F + + R G V F + + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 114 RTNIRHRYIE 123
I ++ +E
Sbjct: 62 FHEINNKMVE 71
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 39.2 bits (91), Expect = 1e-05
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
H + + GLP +N+ + + + P + + G G A + QA++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 112 K-DRTNIRHRYIELFLNSSSPRG 133
+ + + + + S +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGAKN 84
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.3 bits (91), Expect = 2e-05
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 54 HHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAM 110
+ + GL F E+ + +++ + + ++ R G V F++ + AM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 111 SKDRTNIRHRYIE 123
+ +I R +E
Sbjct: 80 AARPHSIDGRVVE 92
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.3 bits (91), Expect = 2e-05
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 55 HTVHMRGLPFRVNEKDIVDFFSPVVP---VYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
+T + LP+ V E+ I +FF + R G F + + A+S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 112 KDRTNIRHRYIELFLNSSSPRGGVGGSG 139
+ ++ ++ I + + + G S
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSS 103
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 38.8 bits (90), Expect = 2e-05
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKN---GRPSGEADVYFATHEDAMQAMSK 112
T+++ L F E+ I + FS + I + G V + + DA AM
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 113 -DRTNIRHRYIELFLNSSSPRG 133
+ T + R I ++ G
Sbjct: 69 INGTRLDDRIIRTDWDAGFKEG 90
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 38.6 bits (89), Expect = 2e-05
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVY----VDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + L ++EK + D FS + + + G G A + FA+ + + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 113 -DRTNIRHRYIEL-FLNSSSPRG 133
+ + +R I + + +G
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 38.9 bits (90), Expect = 2e-05
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 53 GHHTVHMRGLPFRVNEKDIVDFFSPV-VPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
G + ++ L ++ K + D FS + + G V+F T E A +A+
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 66
Query: 112 K-DRTNIRHRYIE 123
K + + R +
Sbjct: 67 KMNGMLLNDRKVF 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.4 bits (89), Expect = 3e-05
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + GLP++ E+D+ ++FS V+ V V + K G G V F +E ++ M
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM-S 68
Query: 113 DRTNIRHRYIE 123
R I R+ +
Sbjct: 69 QRHMIDGRWCD 79
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 38.5 bits (89), Expect = 4e-05
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPV---YVDINYKNGRPSGEADVYFATHE 104
+ GP + + LP ++D++ F P V V I+ + V +
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 71
Query: 105 DAMQAMSK-DRTNIRHRYIE 123
A A+ + I + ++
Sbjct: 72 SAQAAIQSMNGFQIGMKRLK 91
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.1 bits (88), Expect = 4e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEADVYFATHEDAMQAMSK 112
T+ + L E D+ + F P + K G+ G A + F EDA +A++
Sbjct: 10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 69
Query: 113 -DRTNIRHRYIEL 124
H + +
Sbjct: 70 VSGFGYDHLILNV 82
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 38.1 bits (88), Expect = 5e-05
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DRT 115
+ + L + V + FS V + I +A + +A A A D
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ 68
Query: 116 NIRHRYIELFLNSSSPR 132
NI + L ++ S
Sbjct: 69 NIYNACCTLRIDFSKLT 85
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 37.4 bits (86), Expect = 9e-05
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 49 SSGPGHHTVHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKNGRPSGEADVYFATHED 105
S G + +R L + +E+D+ FS ++ I+ +P G A V F E
Sbjct: 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Query: 106 AMQAMSK-DRTNIRHRYIELFLNSSSPRGGVGGSG 139
A++A ++ D + R + + ++ G
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVLPSTIKKEASQSGPS 97
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 36.8 bits (85), Expect = 9e-05
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVP-VYVDINY-KNGRPSGEADVYFATHEDAMQAMSK-D 113
+ + L F V++ DI + F+ ++Y ++GR G ADV+F DA++AM + +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 114 RTNIRHRYIELFLNSS 129
+ R + + L +S
Sbjct: 63 GVPLDGRPMNIQLVTS 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 37.0 bits (85), Expect = 1e-04
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 55 HTVHMRGLPFRVNEKDIV----DFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
HT+++ L ++ + ++ FS + + ++ + G+A V F A A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 111 SK-DRTNIRHRYIEL 124
+ + +
Sbjct: 64 RSMQGFPFYDKPMRI 78
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 36.6 bits (84), Expect = 1e-04
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+ + LP + +++ F + + + G+ G V + +DA +A++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 113 -DRTNIRHRYIEL 124
+ ++ + I++
Sbjct: 64 LNGLRLQTKTIKV 76
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 36.4 bits (83), Expect = 1e-04
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPV-YVDINYKNGRPSGEADVYFATHEDAMQAMSKDR 114
TV ++ LP N+ + +F P+ +VD+ + A + FA ++ A+ A++K
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 61
Query: 115 TNIRHRYIE 123
+ I
Sbjct: 62 KVVGQNEII 70
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.5 bits (84), Expect = 1e-04
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 48 ESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAM 107
E + + + LP + E+++ F +K+ + T A
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF---GFIRLETRTLAE 58
Query: 108 QAMSK-DRTNIRHRYIEL 124
A + D +R + + +
Sbjct: 59 IAKVELDNMPLRGKQLRV 76
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 36.6 bits (84), Expect = 2e-04
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINY---KNGRPSGEADVYFATHEDAMQ 108
+ + GLP+ + + +F + + + G+ G V A A +
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 109 AMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSR 142
A I R + L + +GF+
Sbjct: 68 ACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAI 101
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 36.5 bits (84), Expect = 2e-04
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVY---VDINYKNGRPSGEADVYFATHEDAMQAMSK 112
TV++ GL +V+E + + F PV + + G+ G V F + EDA A+
Sbjct: 11 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 70
Query: 113 -DRTNIRHRYIEL 124
D + + I +
Sbjct: 71 MDMIKLYGKPIRV 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 35.8 bits (82), Expect = 3e-04
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK-DR 114
+++R L +E+ I F+ + P + + A V+F+ EDA++AM +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGA---VERVKKIRDYAFVHFSNREDAVEAMKALNG 66
Query: 115 TNIRHRYIEL 124
+ IE+
Sbjct: 67 KVLDGSPIEV 76
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.1 bits (80), Expect = 6e-04
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 46 VNESSGPGHHT-VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
+ S V GL V+ ++ V + N + + T E
Sbjct: 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP---YSFARYRTTE 67
Query: 105 DAMQAMSK 112
++ +A
Sbjct: 68 ESKRAYVT 75
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 34.6 bits (79), Expect = 6e-04
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFSPV---VPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
+++ GLP + +K++ FS + + ++ G G + F +A +A+
Sbjct: 8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 67
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 34.4 bits (78), Expect = 7e-04
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 56 TVHMRGLPFRVNEKDIVDFFS---PVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMSK 112
T+ M P +++I D V + + A + + EDA + K
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 113 -DRTNIRHRYIE 123
+ I +
Sbjct: 63 LNGLKIEGYTLV 74
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 33.5 bits (76), Expect = 0.004
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 9 TTTTGANRFGGGRGCFNNDRWNDRPGGFAGPRPGD--RWVNESSGPGHHTVHMRGLPFRV 66
+ +G NN RW+D P+ G W + G H +H+ + FRV
Sbjct: 17 KLAGTQDEYGRPVLLLNNKRWHDPV--TETPKVGTTEIWSIINPTRGTHPIHLHLVSFRV 74
Query: 67 NEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATH 103
++ D + P + T
Sbjct: 75 LDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 111
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 32.0 bits (72), Expect = 0.005
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 57 VHMRGLPFRVNEKDIVDFFSPVVPVYVDINYK---NGRPSGEADVYFATHEDAMQAMSK- 112
+++RGL ++D+V P + + G V F + A +A++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 113 DRTNIRHRYI 122
+ ++ +
Sbjct: 61 KASGVQAQMA 70
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 31.7 bits (71), Expect = 0.011
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 49 SSGPGH-----HTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATH 103
SSG H VH+RGL V E D+V+ +A V F
Sbjct: 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEAL---EKFGTICYVMMMPFKRQALVEFENI 61
Query: 104 ED---AMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGSGFSR 142
+ + + I + ++S G SG S
Sbjct: 62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSS 103
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.3 bits (70), Expect = 0.014
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
P T+H+ +P V+E+D+ FS V V + A + + E+A+QA+
Sbjct: 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGV-VKGFKFFQKDRKMALIQMGSVEEAVQAL 65
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.2 bits (70), Expect = 0.014
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAMS 111
G V + + E ++ +FFS V K A V FA + A
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLC- 59
Query: 112 KDRTNIRHRYIE 123
+ I+ +
Sbjct: 60 GEDLIIKGISVH 71
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 30.5 bits (68), Expect = 0.029
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPV-----------YVDINYKNGRPSGEADVYF 100
+ ++++GL V D+ DFF V ++ ++ + G+P G+A V +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 101 ATHEDAMQAMSK-DRTNIRHRYIEL 124
A A+ D + + +++
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKV 90
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 30.1 bits (67), Expect = 0.040
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 49 SSGP----GHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHE 104
S GP V + GLP + +D+ D D+ Y + + G V + E
Sbjct: 6 SGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE----AGDVCYADVQKDGMGMVEYLRKE 61
Query: 105 DAMQAMSK-DRTNIRHRYIEL-FLNSSSPRGGVGGSG 139
D A+ K D T R E ++ R SG
Sbjct: 62 DMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPSSG 98
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 28.2 bits (62), Expect = 0.18
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 52 PGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA---MQ 108
G L + +D+ FS I++ G G + ++A +
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGE-IKWIDFVRGAKEGIIL-FKEKAKEALGKAK 66
Query: 109 AMSKDRTNIRHRYIELF 125
+ +R++ +
Sbjct: 67 DANNGNLQLRNKEVTWE 83
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.8 bits (59), Expect = 0.55
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 68 EKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDAMQAM 110
+D+ S + + + P G A V F E+A +
Sbjct: 33 REDLRVECSKFGQI-RKLLLFDRHPDGVASVSFRDPEEADYCI 74
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 27.3 bits (60), Expect = 0.86
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 91 RPSGEADVYFATHEDAMQAMSKDRTNIRHRYIELFLNSSSPRGGVGGS 138
R SG VY+ M M + + + + GGV S
Sbjct: 40 RMSG---VYWGLT--VMDLMGQLHRMNKEEILVFIKSCQHECGGVSAS 82
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (56), Expect = 1.0
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 47 NESSGPGHHTVHMRGLPFRVNEKDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
++ G +H+R LP V E +++ P V + K +
Sbjct: 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITM 60
Query: 107 MQAMSKDRTNIRHRYI 122
+ S ++R++ I
Sbjct: 61 VNYYSAVTPHLRNQPI 76
>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 167
Score = 26.3 bits (57), Expect = 1.2
Identities = 11/57 (19%), Positives = 16/57 (28%)
Query: 14 ANRFGGGRGCFNNDRWNDRPGGFAGPRPGDRWVNESSGPGHHTVHMRGLPFRVNEKD 70
G GCF D + G RP R ++ H+ + D
Sbjct: 27 TQDGEGWAGCFTEDGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGD 83
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 25.5 bits (55), Expect = 1.5
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 9/88 (10%)
Query: 52 PGHHTVHMRGLPFRVNE-----KDIVDFFSPVVPVYVDINYKNGRPSGEADVYFATHEDA 106
G + V F ++ + + F+ A
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKD---TTFQYFKSFKRVRINFSNPLSA 59
Query: 107 MQAMSK-DRTNIRHRYIELFLNSSSPRG 133
A + +T + ++L+ + G
Sbjct: 60 ADARLRLHKTEFLGKEMKLYFAQTLHIG 87
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 25.7 bits (56), Expect = 2.4
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 17/81 (20%)
Query: 74 FFSPVVPVYVD------INYKNGRPSGEADVYFATHED-AMQAMSKDRT-----NIRHRY 121
F PV+ + + N G A F D A + N +
Sbjct: 394 IFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVF 453
Query: 122 IELFLNSSSPRGGVGGSGFSR 142
+ SP GG SG R
Sbjct: 454 -----GAQSPFGGYKMSGSGR 469
>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 494
Score = 25.8 bits (56), Expect = 2.5
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 74 FFSPVVPVYV------DINYKNGRPSGEADVYFATHED-AMQAMSKDRTNIRHRYIELFL 126
F PV + I N G + F D A+ S ++ +
Sbjct: 394 IFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVV 453
Query: 127 NSSSPRGGVGGSGFSR 142
++ P GG SG R
Sbjct: 454 SAQCPFGGFKMSGNGR 469
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 24.7 bits (53), Expect = 4.7
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 39 PRPGDRWVNESSGPGHHTVHM 59
P ++ + G G H+ +
Sbjct: 21 PEDEKIILDCTVGEGGHSRAI 41
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 24.8 bits (53), Expect = 5.1
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 74 FFSPVVPVYVD------INYKNGRPSGEADVYFATHEDAMQAMSKD----RTNIRHRYIE 123
F PV+ V + N P G ++ + ++ ++ +R I
Sbjct: 418 IFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYF-NRKIT 476
Query: 124 LFLNSSSPRGGVGGSGFSR 142
L P GG SG +
Sbjct: 477 GALVGVQPFGGFKLSGTNA 495
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 23.9 bits (52), Expect = 8.7
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 35 GFAGPRPG-----DRWVNESSGPGHHTVHMRGLPFRVNEKDIVDF 74
+P + W+ +G HHTV +N D+ F
Sbjct: 99 ALWKAQPDLPTASEAWI--LAGGAHHTV----FSHALNLNDMRQF 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.435
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,965
Number of extensions: 28129
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 70
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)