BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy307
(1019 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 84 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 138
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 139 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 187 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 221
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 222 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 274
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 82 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 136
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 137 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 185 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 219
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 220 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 66 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 120
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 121 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 203
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 204 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 66 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 120
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 121 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 203
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 204 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 77 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 131
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 132 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 180 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 214
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 215 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 60 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 114
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 115 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 197
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 198 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 65 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 119
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 120 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 168 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 202
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 203 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 61 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 115
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 116 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 164 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 198
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 199 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 66 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 120
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 121 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 169 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 203
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 204 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 63 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 117
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 118 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 200
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 201 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 60 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 114
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 115 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 163 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 197
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 198 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 63 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 117
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 118 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 200
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 201 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 59 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 113
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 114 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 162 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 196
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 197 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 56 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 110
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 111 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 159 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 193
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 194 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 63 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 117
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K +C++T H V + FN G+
Sbjct: 118 -----------FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 200
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 201 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 63 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 117
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K C++T H V + FN G+
Sbjct: 118 -----------FNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 200
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 201 ----VKFSPNGKYILAATLDNDLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 50/281 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T GH GIS + W S +LL+S S D +K+W+V +C++T GH V C N
Sbjct: 63 TISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYV--FCCN- 117
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
F ++L++S S D V++W+V K C++T H V + FN G+
Sbjct: 118 -----------FNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
+S+ YD ++WDT SG+C+ D+D PV
Sbjct: 166 LIVSSSYDGLCRIWDTASGQCLKTLI------------DDDNP----PVSF--------- 200
Query: 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS-PDMS 568
V SPN K++ ++DN + ++ + K KT+ GH Y +FS
Sbjct: 201 ----VKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 569 YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609
+++SG D YIW+ +T ++ +K + H V IST HP E
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 124/303 (40%), Gaps = 48/303 (15%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T +GHT + I F S LL SCS D +KLW+ ++ C+RT +GH V +
Sbjct: 145 TLKGHTDSVQDIS-FDHSGKLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMP 202
Query: 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT 449
G + +SA R D +K+WEV + CV+T+ GHR+ VR + N GT
Sbjct: 203 NGDHIVSASR--------------DKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT 247
Query: 450 NFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508
S D+ +++W + EC + R V C+ + P+ +
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES-----------------SY 290
Query: 509 HSMPAVTSSPNNK------WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562
S+ T S K +L S D I ++ L T GH + +
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL---MTLVGH--DNWVRGVL 345
Query: 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAAT 622
F +++S D +WD+K + K AH+ S +H P VVT D T
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY-VVTGSVD-QT 403
Query: 623 AKV 625
KV
Sbjct: 404 VKV 406
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 51/192 (26%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ T GH +S++ P H ++S S D +K+WEV + CV+T+ GHR+ VR +
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRP 242
Query: 388 NNTGT-----------------------------NFISAIRWFPKSAH------------ 406
N GT + + I W P+S++
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 407 -------LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY 459
LLS S D +K+W+V C+ T GH VR + F++ G +S D+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 460 LKLWDTESGECI 471
L++WD ++ C+
Sbjct: 362 LRVWDYKNKRCM 373
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 346 KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405
K LLS S D +K+W+V C+ T GH VR + F++ G
Sbjct: 306 KPGPFLLSGSRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGK------------- 351
Query: 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+LSC+ D +++W+ YK RC++T H V + F+ T ++ D+ +K+W+
Sbjct: 352 -FILSCADDKTLRVWD-YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 108/263 (41%), Gaps = 59/263 (22%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV----RTYYGHRQAVRDI 385
T HT ++AI +A +++S S D + LW++ K+ + R GH V D+
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
++ G LS S D ++LW++ R + GH + V + F+
Sbjct: 437 VLSSDG--------------QFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFS 481
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTS-----RKVAYCVKFHPDEDKQHLDIPVDM 500
+SA DR +KLW+T GEC + R CV+F P+
Sbjct: 482 LDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPN------------ 528
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
T+ P + S+ S D + +++ L+ KL + T GH GY +
Sbjct: 529 ------TLQ--PTIVSA---------SWDKTVKVWN-LSNCKL--RSTLAGH--TGYVST 566
Query: 561 LDFSPDMSYLISGDADGKCYIWD 583
+ SPD S SG DG +WD
Sbjct: 567 VAVSPDGSLCASGGKDGVVLLWD 589
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 101/265 (38%), Gaps = 60/265 (22%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GHTK + ++ F ++S S D +KLW E C T + RD
Sbjct: 470 GHTKDVLSVA-FSLDNRQIVSASRDRTIKLWNTLGE--CKYTISEGGEGHRD-------- 518
Query: 393 NFISAIRWFPKSAH-LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451
++S +R+ P + ++S S D VK+W + + T GH V + + G+
Sbjct: 519 -WVSCVRFSPNTLQPTIVSASWDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSM 511
S G D + LWD G+ + + V + + F
Sbjct: 577 ASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF-------------------------- 610
Query: 512 PAVTSSPNNKWLACQSMDNKILIF-----SALNRFKLNRKKTFEGHMVAG---------Y 557
SPN WL C + ++ I I+ S + K++ K E +G Y
Sbjct: 611 -----SPNRYWL-CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664
Query: 558 ACSLDFSPDMSYLISGDADGKCYIW 582
SL++S D S L SG DG +W
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 42/278 (15%)
Query: 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
E H+ + + + P + S S D VKLW + + ++T GH +V + F+ G
Sbjct: 13 EAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 392 TNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451
SA S D VKLW + + ++T GH +VR + F+ G
Sbjct: 70 QTIASA--------------SDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 452 ISAGYDRYLKLWDTESGECISRFTSRKVA-YCVKFHPD--------EDKQHLDIPVDMKY 502
SA D+ +KLW+ +G+ + T + + V F PD +DK + +
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172
Query: 503 IADPTMHSMP--AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH--MVAGYA 558
+ T HS V SP+ + +A S D + +++ + +T GH V G A
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVA 228
Query: 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
FSPD + S D +W+ + +L + H
Sbjct: 229 ----FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 261
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 42/282 (14%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ T GH+ + + + P + S S D VKLW + + ++T GH +V + F
Sbjct: 296 LQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGVAF 352
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ G SA S D VKLW + + ++T GH +VR + F+
Sbjct: 353 SPDGQTIASA--------------SDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPD 396
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVA-YCVKFHPD--------EDKQHLDIPV 498
G SA D+ +KLW+ +G+ + T + + V F PD +DK
Sbjct: 397 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455
Query: 499 DMKYIADPTMH--SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH--MV 554
+ + + T H S+ V SP+ + +A S D + +++ + +T GH V
Sbjct: 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSV 511
Query: 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
G A FSPD + S D +W+ + +L + H
Sbjct: 512 RGVA----FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 548
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ T GH+ + + + P + S S D VKLW + + ++T GH +VR + F
Sbjct: 460 LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAF 516
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ G SA S D VKLW + + ++T GH +V + F+
Sbjct: 517 SPDGQTIASA--------------SDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 448 GTNFISAGYDRYLKLWD 464
G SA D+ +KLW+
Sbjct: 561 GQTIASASSDKTVKLWN 577
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 42/259 (16%)
Query: 332 EGHTKGISAI-RWFPKSAH----LLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRD 384
EGH+ +++I F + + +L+S S D V +W++Y+E + Y+G H+
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ--NGYFGIPHKAL--- 72
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
TG N + + +S S D ++LW++ + + + GH+ V + F
Sbjct: 73 -----TGHNHFVSDLALSQENCFAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAF 126
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504
+ +SAG +R +KLW+ GEC KF E + H D ++Y
Sbjct: 127 SPDNRQILSAGAEREIKLWNI-LGEC-------------KFSSAEKENHSDWVSCVRY-- 170
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
P M S V P + A D ++ +++ F++ + TF+ H L S
Sbjct: 171 SPIMKSANKV--QPFAPYFASVGWDGRLKVWNT--NFQI--RYTFKAH--ESNVNHLSIS 222
Query: 565 PDMSYLISGDADGKCYIWD 583
P+ Y+ +G D K IWD
Sbjct: 223 PNGKYIATGGKDKKLLIWD 241
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 113/276 (40%), Gaps = 52/276 (18%)
Query: 351 LLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410
++S S D +K+W + C+RT GH TG + S +R ++++S
Sbjct: 132 IVSGSDDNTLKVWSAVTGK-CLRTLVGH-----------TGGVWSSQMR-----DNIIIS 174
Query: 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470
S D +K+W + C+ T YGH VR C + +S D L++WD E+G+C
Sbjct: 175 GSTDRTLKVWNA-ETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQC 231
Query: 471 ISRFTSRKVAY-CVKFHPDEDKQHLDIPVD-MKYIADPTMHSMPAVTSSPNNKWLACQ-- 526
+ A CV++ + ++ + D M + DP + N+ + Q
Sbjct: 232 LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 527 -------SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC 579
S+D I ++ N T GH ++ ++ L+SG+AD
Sbjct: 289 GIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQ--SLTSGMELKDNI--LVSGNADSTV 341
Query: 580 YIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615
IWD KT G C+ TL P++ VT
Sbjct: 342 KIWDIKT-----------GQCLQTLQGPNKHQSAVT 366
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+HT GHT S +R ++S S D +++W++ + +C+ GH AVR C
Sbjct: 192 IHTLYGHT---STVRCMHLHEKRVVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVR--CV 245
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
G +S + D VK+W+ E C+ T GH V + F+
Sbjct: 246 QYDGRRVVSG--------------AYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQFD-- 288
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRK 478
G + +S D +++WD E+G CI T +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 28/156 (17%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
+T +HT +GHT + ++++ H++ S S+D +++W+V + C+ T GH+
Sbjct: 269 ETCLHTLQGHTNRVYSLQF--DGIHVV-SGSLDTSIRVWDV-ETGNCIHTLTGHQSLTSG 324
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRD 441
+ + ++L+S + D VK+W++ K +C++T G H+ AV
Sbjct: 325 MELKD----------------NILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTC 367
Query: 442 ICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTS 476
+ FN NF I++ D +KLWD ++GE I +
Sbjct: 368 LQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 61/263 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV----RTYYGHRQAVRDI 385
T +GH ++ I P+ ++LS S D + +W++ ++ R GH V D+
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
++ G LS S D ++LW++ R + GH + V + F+
Sbjct: 93 VISSDG--------------QFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFS 137
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY-----CVKFHPDEDKQHLDIPVDM 500
+ +S D+ +KLW+T G C ++T + ++ CV+F P+
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTL-GVC--KYTVQDESHSEWVSCVRFSPNS----------- 183
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
S P + S +K + ++ N L K GH GY +
Sbjct: 184 ---------SNPIIVSCGWDKLVKVWNLANCKL------------KTNHIGH--TGYLNT 220
Query: 561 LDFSPDMSYLISGDADGKCYIWD 583
+ SPD S SG DG+ +WD
Sbjct: 221 VTVSPDGSLCASGGKDGQAMLWD 243
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 61/263 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV----RTYYGHRQAVRDI 385
T +GH ++ I P+ ++LS S D + +W++ ++ R GH V D+
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
++ G LS S D ++LW++ R + GH + V + F+
Sbjct: 70 VISSDG--------------QFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFS 114
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY-----CVKFHPDEDKQHLDIPVDM 500
+ +S D+ +KLW+T G C ++T + ++ CV+F P+
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTL-GVC--KYTVQDESHSEWVSCVRFSPNS----------- 160
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
S P + S +K + ++ N L K GH GY +
Sbjct: 161 ---------SNPIIVSCGWDKLVKVWNLANCKL------------KTNHIGH--TGYLNT 197
Query: 561 LDFSPDMSYLISGDADGKCYIWD 583
+ SPD S SG DG+ +WD
Sbjct: 198 VTVSPDGSLCASGGKDGQAMLWD 220
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 94/251 (37%), Gaps = 63/251 (25%)
Query: 345 PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--------HRQAVRDICFNNTGTNFIS 396
P++A ++S S D + W +R YG H V D+ +N G +S
Sbjct: 25 PETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVS 84
Query: 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY 456
A S D ++LW + + +C + GH + V + F+ +S G
Sbjct: 85 A--------------SWDHSLRLWNL-QNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 457 DRYLKLWDTESGEC---ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513
D L++W+ + GEC +SR CV+F P LD PV
Sbjct: 130 DNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPS-----LDAPV--------------- 168
Query: 514 VTSSPNNKWLACQSMDNKILIFS-ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572
+ DN + ++ A R + K GH Y S+ SPD S S
Sbjct: 169 ---------IVSGGWDNLVKVWDLATGRLVTDLK----GH--TNYVTSVTVSPDGSLCAS 213
Query: 573 GDADGKCYIWD 583
D DG +WD
Sbjct: 214 SDKDGVARLWD 224
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 36/169 (21%)
Query: 430 RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489
R GH V D+ +N G +SA +D L+LW+ ++G+C +F
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF--------------- 105
Query: 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF 549
+ + D + +V SP+N+ + DN + +++ K T
Sbjct: 106 ----------LGHTKD-----VLSVAFSPDNRQIVSGGRDNALRVWN----VKGECMHTL 146
Query: 550 EGHMVAGYACSLDFSP--DMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
+ + FSP D ++SG D +WD T +L K H
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGH 195
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GHTK + ++ + P + ++ S D +++W V E C+ T T
Sbjct: 107 GHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNVKGE--CMHTLS-----------RGAHT 152
Query: 393 NFISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451
+++S +R+ P A +++S D VK+W++ R V GH V + + G+
Sbjct: 153 DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-ATGRLVTDLKGHTNYVTSVTVSPDGSLC 211
Query: 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488
S+ D +LWD GE +S + + F P+
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 408 LLSCSMDCRVKLWEVYKEHRCVR-TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE 466
+++ S+D VK+W+ E ++ + GH+ V + ++T S+ D +++LWD E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 467 SGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDM-------------KYIADPTMHSMP 512
+G+ I + V A+ + F P D Q+L + +Y D +
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 513 AVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572
++ SP+ K+LA ++D I IF L+ T EGH + SL FSPD L++
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMP--IRSLTFSPDSQLLVT 223
Query: 573 GDADGKCYIWDWKTTKLFKKWKAH 596
DG I+D + L H
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGH 247
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+HT EGH I ++ + P S LL++ S D +K+++V + T GH V ++ F
Sbjct: 199 LHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDV-QHANLAGTLSGHASWVLNVAF 256
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
T+F+S+ S D VK+W+V CV T++ H+ V + +N
Sbjct: 257 CPDDTHFVSS--------------SSDKSVKVWDV-GTRTCVHTFFDHQDQVWGVKYNGN 301
Query: 448 GTNFISAGYDRYLKLWD 464
G+ +S G D+ + ++D
Sbjct: 302 GSKIVSVGDDQEIHIYD 318
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFI 395
K I +I + P +L S ++D + ++++ + + T GH +R + F+
Sbjct: 165 KFILSIAYSPDGKYLA-SGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFS------- 215
Query: 396 SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455
P S LL++ S D +K+++V + T GH V ++ F T+F+S+
Sbjct: 216 ------PDS-QLLVTASDDGYIKIYDV-QHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 456 YDRYLKLWDTESGECI-SRFTSRKVAYCVKFHPDEDK 491
D+ +K+WD + C+ + F + + VK++ + K
Sbjct: 268 SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 321 CFLPKTQ-----VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR--CVR 373
C K Q V T EGH + ++ W P S +LL +CS D V +WEV +E CV
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW-EVYKEHRCVRTY 432
H Q V+ + W P S LL S S D VKL+ E + C T
Sbjct: 145 VLNSHTQDVKHVV-------------WHP-SQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 433 YGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
GH V + F+ +G S DR +++W
Sbjct: 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 28/219 (12%)
Query: 282 LEEKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-------EGH 334
+++ +L + P R + + GT L S R + T+ +W EGH
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH 60
Query: 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTN 393
+ + + W P + L S S D +W+ ++ CV T GH N
Sbjct: 61 QRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-------------N 106
Query: 394 FISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNF 451
+ ++ W P S +LL +CS D V +WEV +E + CV H Q V+ + ++ +
Sbjct: 107 EVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 452 ISAGYDRYLKLWDTESGE---CISRFTSRKVAYCVKFHP 487
SA YD +KL+ E + C + + + F P
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE 364
H + H++ ++ + W PK LL SCS D V W+
Sbjct: 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHRC----VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + + D+ + K I T+ T +N
Sbjct: 91 LWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGH--NSNINTLTAS 205
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 44/270 (16%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR----CVRTYYGHRQAVRDI 385
T EGH ++++ +LLLS S D + W++ + + VR++ GH V+D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 386 CFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445
G LS S D ++LW+V R + GH+ V + +
Sbjct: 72 TLTADGA--------------YALSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDID 116
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPV------ 498
+ IS D+ +K+W T G+C++ V+ P+E + +
Sbjct: 117 KKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 499 ---------DMKYIADPTMH--SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547
+ AD H ++ +T+SP+ +A D +I++++ L KK
Sbjct: 176 KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN------LAAKK 229
Query: 548 TFEGHMVAGYACSLDFSPDMSYLISGDADG 577
SL FSP+ +L + A G
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454
I+ +++FP S L+S S D ++K+W V K+ RT GHR V DI + G N +SA
Sbjct: 139 ITKLKFFP-SGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 196
Query: 455 GYDRYLKLWDTESGECISRFTSRK 478
D ++LW+ +G I F ++
Sbjct: 197 SLDGTIRLWECGTGTTIHTFNRKE 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
+ H I+ +++FP S L+S S D ++K+W V K+ RT GHR V DI + G
Sbjct: 133 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 392 TNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
N +LS S+D ++LWE
Sbjct: 191 RN--------------VLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454
I+ +++FP S L+S S D ++K+W V K+ RT GHR V DI + G N +SA
Sbjct: 142 ITKLKFFP-SGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199
Query: 455 GYDRYLKLWDTESGECISRFTSRK 478
D ++LW+ +G I F ++
Sbjct: 200 SLDGTIRLWECGTGTTIHTFNRKE 223
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
+ H I+ +++FP S L+S S D ++K+W V K+ RT GHR V DI + G
Sbjct: 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 392 TNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
N +LS S+D ++LWE
Sbjct: 194 RN--------------VLSASLDGTIRLWE 209
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + + D+ + K I T+ T +N
Sbjct: 91 LWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGH--NSNINTLTAS 205
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 102/262 (38%), Gaps = 57/262 (21%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + ++ K A +++S S D +K+W + + +C+ T GH
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTI--KGQCLATLLGH-------------N 148
Query: 393 NFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+++S +R P + ++S D VK W + + + + GH + + +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPD 207
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
GT SAG D + LW+ + + + +++ + + F
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF---------------------- 245
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHMVAG--YACSLDFS 564
SPN WLA + I +FS ++ ++ + F G+ A +A SL +S
Sbjct: 246 ---------SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
D L +G D +W T
Sbjct: 296 ADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + + D+ + K I T+ T +N
Sbjct: 85 LWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGH--NSNINTLTAS 199
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 102/262 (38%), Gaps = 57/262 (21%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + ++ K A +++S S D +K+W + + +C+ T GH
Sbjct: 99 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTI--KGQCLATLLGH-------------N 142
Query: 393 NFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+++S +R P + ++S D VK W + + + + GH + + +
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPD 201
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
GT SAG D + LW+ + + + +++ + + F
Sbjct: 202 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF---------------------- 239
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHMVAG--YACSLDFS 564
SPN WLA + I +FS ++ ++ + F G+ A +A SL +S
Sbjct: 240 ---------SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
D L +G D +W T
Sbjct: 290 ADGQTLFAGYTDNVIRVWQVMT 311
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + + D+ + K I T+ T +N
Sbjct: 91 LWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGH--NSNINTLTAS 205
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 102/262 (38%), Gaps = 57/262 (21%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + ++ K A +++S S D +K+W + + +C+ T GH
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTI--KGQCLATLLGH-------------N 148
Query: 393 NFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+++S +R P + ++S D VK W + + + + GH + + +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPD 207
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
GT SAG D + LW+ + + + +++ + + F
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF---------------------- 245
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHMVAG--YACSLDFS 564
SPN WLA + I +FS ++ ++ + F G+ A +A SL +S
Sbjct: 246 ---------SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
D L +G D +W T
Sbjct: 296 ADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + + D+ + K I T+ T +N
Sbjct: 91 LWDVATGETYQRFVGHK-SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGH--NSNINTLTAS 205
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 102/262 (38%), Gaps = 57/262 (21%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + ++ K A +++S S D +K+W + + +C+ T GH
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTI--KGQCLATLLGH-------------N 148
Query: 393 NFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+++S +R P + ++S D VK W + + + + GH + + +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPD 207
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
GT SAG D + LW+ + + + +++ + + F
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF---------------------- 245
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHMVAG--YACSLDFS 564
SPN WLA + I +FS ++ ++ + F G+ A +A SL +S
Sbjct: 246 ---------SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
D L +G D +W T
Sbjct: 296 ADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 26/215 (12%)
Query: 406 HLLLSCSMDCRVKLWEVYKEHR----CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLK 461
+LLLS S D + W++ + + VR++ GH V+D G +SA +D+ L+
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 462 LWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521
LWD +GE RF K + D+ + K I T+ T +N
Sbjct: 91 LWDVATGETYQRFVGHK-SDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 522 WLAC-------QSMDNKILIFSA----------LNRFKLNRKKTFEGHMVAGYACSLDFS 564
W++ ++ D+ + I SA LN+F++ + F GH +L S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGH--NSNINTLTAS 205
Query: 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV 599
PD + + S DG+ +W+ K A D V
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 57/262 (21%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + ++ K A ++S S D +K+W + + +C+ T GH
Sbjct: 105 GHKSDVXSVD-IDKKASXIISGSRDKTIKVWTI--KGQCLATLLGH-------------N 148
Query: 393 NFISAIRWFPKS-----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+++S +R P + ++S D VK W + + + + GH + + +
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL-NQFQIEADFIGHNSNINTLTASPD 207
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507
GT SAG D + LW+ + + +++ + + F
Sbjct: 208 GTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAF---------------------- 245
Query: 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR-KKTFEGHMVAG--YACSLDFS 564
SPN WLA + I +FS ++ ++ + F G+ A +A SL +S
Sbjct: 246 ---------SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
D L +G D +W T
Sbjct: 296 ADGQTLFAGYTDNVIRVWQVXT 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 392 TNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVR--DICFNNTGT 449
TN++SA F S +L+ S D LW+V + + +++++GH V D+ + TG
Sbjct: 154 TNYLSACS-FTNSDMQILTASGDGTCALWDV-ESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 450 NFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDK----------QHLDIPV 498
F+S G D+ +WD SG+C+ F T V+++P D + D+
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Query: 499 DMK---YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA 555
D + Y + + +V S + + L+F+ N + +N +G V+
Sbjct: 272 DREVAIYSKESIIFGASSVDFSLSGR-----------LLFAGYNDYTINVWDVLKGSRVS 320
Query: 556 ---GY---ACSLDFSPDMSYLISGDADGKCYIW 582
G+ +L SPD + SG D +W
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 513 AVTSSPNNKWLACQSMDNKILIFSAL---NRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569
A +P+ +AC +DNK ++ N +KK+ H ACS S DM
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS-DMQ- 168
Query: 570 LISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG 617
+++ DG C +WD ++ +L + + H + P E +G
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587
AL +F + ++T +GH +D+ D ++S DGK +WD TT
Sbjct: 48 ALGQFVMKTRRTLKGH--GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT 96
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 547 KTFEGHMVAGYACSLDFSPDMS--YLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604
++F GH A C LD +P + +SG D K +WD ++ + + ++ H+ S
Sbjct: 190 QSFHGHG-ADVLC-LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 605 WHPHEPSKVVTAGWDAATAKVQD 627
++P +G D AT ++ D
Sbjct: 248 YYP--SGDAFASGSDDATCRLYD 268
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 107/268 (39%), Gaps = 47/268 (17%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
V +GH + I ++ +FP S L+S S D V++W++ + +C T ++ D
Sbjct: 158 VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDL-RTGQCSLTL-----SIED--- 207
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR------TYYGHRQAVRD 441
++ + P + + S+D V++W+ R + GH+ +V
Sbjct: 208 ------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261
Query: 442 ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK 501
+ F G + +S DR +KLW+ ++ S + C ++
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC----------------EVT 305
Query: 502 YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH----MVAGY 557
YI + +V ++ N++++ S D +L + ++ N +GH +
Sbjct: 306 YIGHKDF--VLSVATTQNDEYILSGSKDRGVLFW---DKKSGNPLLMLQGHRNSVISVAV 360
Query: 558 ACSLDFSPDMSYLISGDADGKCYIWDWK 585
A P+ + +G D K IW +K
Sbjct: 361 ANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 52/270 (19%)
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
F L + + D +++W++ + R+ V GH Q I ++ +FP
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQD-------------IYSLDYFP- 175
Query: 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKL 462
S L+S S D V++W++ + +C T V + + +I+AG DR +++
Sbjct: 176 SGDKLVSGSGDRTVRIWDL-RTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 463 WDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522
WD+E+G + R S + H D S+ +V + + +
Sbjct: 234 WDSETGFLVERLDSEN---------ESGTGHKD--------------SVYSVVFTRDGQS 270
Query: 523 LACQSMDNKILIFSALNRFKLNRKKT---------FEGHMVAGYACSLDFSPDMSYLISG 573
+ S+D + +++ N + KT + GH + S+ + + Y++SG
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSG 328
Query: 574 DADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
D WD K+ + H IS
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 34/200 (17%)
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494
H V + F+N G +++ G ++ +++ G ++R + A ++D ++L
Sbjct: 63 HTSVVCCVKFSNDG-EYLATGCNKTTQVYRVSDGSLVARLSDDSAA-------NKDPENL 114
Query: 495 DI---PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551
+ P YI +V SP+ K+LA + D I I+ NR + +G
Sbjct: 115 NTSSSPSSDLYIR--------SVCFSPDGKFLATGAEDRLIRIWDIENRKIV---MILQG 163
Query: 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPS 611
H Y SLD+ P L+SG D IWD +T + DGV +T+
Sbjct: 164 HEQDIY--SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAVSPGDG 219
Query: 612 KVVTAG--------WDAATA 623
K + AG WD+ T
Sbjct: 220 KYIAAGSLDRAVRVWDSETG 239
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 16/195 (8%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
T+EGH + + + PK S +D VK+W + + G +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-------- 185
Query: 389 NTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
G N++ ++P +++ S D +K+W+ Y+ CV T GH V F+ T
Sbjct: 186 --GVNYVD---YYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 448 GTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
IS D LK+W++ + + + ++C+ HP K ++ D +
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299
Query: 507 TMHSMPAVTSSPNNK 521
+ P ++ P K
Sbjct: 300 LGNDEPTLSLDPVGK 314
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 91/236 (38%), Gaps = 50/236 (21%)
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNF 451
++I +I P ++L S S D VKLW +T+ GH V + FN + F
Sbjct: 98 DYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 452 ISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
S DR +K+W G+ FT R V Y V ++P DK ++ D D
Sbjct: 157 ASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASD-----DL 208
Query: 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-AGYACSLDFSP 565
T+ T S C + T EGHM +A F P
Sbjct: 209 TIKIWDYQTKS-------CVA--------------------TLEGHMSNVSFAV---FHP 238
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWD 619
+ +ISG DG IW+ T K+ K CI+T HP + +G+D
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT--HPTGRKNYIASGFD 292
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/285 (20%), Positives = 106/285 (37%), Gaps = 52/285 (18%)
Query: 351 LLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410
+L+ RV++W Y+ + VR+ VR FI+ W ++
Sbjct: 28 VLTTLYSGRVEIWN-YETQVEVRSIQVTETPVR-------AGKFIARKNW-------IIV 72
Query: 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470
S D R++++ Y V + H +R I + T +S D +KLW+ E+
Sbjct: 73 GSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 471 ISR-FTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528
+ + F + CV F+P DP+ + + + W QS
Sbjct: 132 LEQTFEGHEHFVMCVAFNP----------------KDPSTFASGCLDRTVK-VWSLGQST 174
Query: 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
N F L + + V Y PD Y+I+ D IWD++T
Sbjct: 175 PN----------FTLTTGQERGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKS 219
Query: 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633
+ H ++HP P ++ +G + T K+ +++ K+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV 262
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 120/317 (37%), Gaps = 48/317 (15%)
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
F + +CS+D +VK+W V TY H + V F N+
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMT-GELVHTYDEHSEQVNCCHFTNS------------- 716
Query: 404 SAHLLLSC-SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKL 462
S HLLL+ S DC +KLW++ + C T +GH +V F+ S D LKL
Sbjct: 717 SHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 463 WDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK---YIADPTMHSMPAVTSSPN 519
WD S RK +F + + D+ V +K + AD + A
Sbjct: 776 WDATSA------NERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA------ 823
Query: 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC 579
NKI +F L T GH C DFSP + +
Sbjct: 824 ---------KNKIFLFDIHTSGLLGEIHT--GHHSTIQYC--DFSPQNHLAVVALSQYCV 870
Query: 580 YIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV--KIAVEM 637
+W+ + + H ++ P S + ++ D T ++ + V AV +
Sbjct: 871 ELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSS--DDQTIRLWETKKVCKNSAVML 928
Query: 638 EKQVPQLYQFNQTLTLS 654
+++V ++Q N+ + L+
Sbjct: 929 KQEVDVVFQENEVMVLA 945
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
VHT++ H++ ++ + S HLLL+ S DC +KLW++ ++ C T +GH
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGH-------- 748
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
TN ++ R+ P LL SCS D +KLW+
Sbjct: 749 -----TNSVNHCRFSPDDK-LLASCSADGTLKLWD 777
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 15/161 (9%)
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQH 493
H AV CF+ G S G D+ L+++ E+GE + + + C F D D+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD-DRFI 678
Query: 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK---ILIFSA-----LNRFKLNR 545
VD K +M T +++ + C N +L+ + L + LN+
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 546 KK---TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583
K+ T GH + C FSPD L S ADG +WD
Sbjct: 739 KECRNTMFGHTNSVNHCR--FSPDDKLLASCSADGTLKLWD 777
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/296 (19%), Positives = 110/296 (37%), Gaps = 50/296 (16%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKERRCVRT---YYGHRQAVRDICF 387
GHT ++ R+ P LL SCS D +KLW+ ER+ + + D+
Sbjct: 747 GHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM-- 803
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ W A ++++ ++ L++++ + GH ++ F+
Sbjct: 804 ----EVIVKCCSWSADGARIMVAAKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ 857
Query: 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC---------VKFHPDEDKQHLDIPV 498
+ A ++LW+T+S KVA C V F PD
Sbjct: 858 NHLAVVALSQYCVELWNTDS--------RSKVADCRGHLSWVHGVMFSPDGSSF------ 903
Query: 499 DMKYIADPTMHSMPAVTSSPNNKWLACQSMD-----NKILIFSA--LNRFKLNRKKTFE- 550
+ D T+ N+ + Q +D N++++ + + R +L +T +
Sbjct: 904 -LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI 962
Query: 551 GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606
++ SP + Y+ GD +G I + ++F+ H T+WH
Sbjct: 963 DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHK----KTVWH 1014
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 40/177 (22%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH + + R S LLS S D VK+W + + + + H+ V ++ T
Sbjct: 1048 GHQETVKDFRLLKNSR--LLSWSFDGTVKVWNIITGNK-EKDFVCHQGTVLSCDISHDAT 1104
Query: 393 NFIS------AIRW----------------------FPKSAHLLLSCSMDCRVKLWEVYK 424
F S A W F + LL + + +++W V
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 425 E---HRCV----RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
H C H V D+CF+ G ISAG Y+K W+ +GE F
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTF 1219
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY--------GHRQAVRD 384
H K I ++ W P ++ LL + S D V +W KE RT+ GH V+
Sbjct: 56 AHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWA--KEESADRTFEMDLLAIIEGHENEVKG 112
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV---YKEHRCVRTYYGHRQAVRD 441
+ ++N G + L +CS D V +WE +E+ C+ H Q V+
Sbjct: 113 VAWSNDG--------------YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 442 ICFNNTGTNFISAGYDRYLKLWD--TESGECIS 472
+ ++ + S+ YD +++W + EC++
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVA 191
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 323 LPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAV 382
+P ++V T GH S+ ++ P L++ S D LW+V G R ++
Sbjct: 147 MPVSRVLT--GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT---------GQRISI 195
Query: 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDI 442
F + T + ++ +A++ +S S D V+LW++ R VRTY+GH + +
Sbjct: 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 443 CFNNTGTNFISAGYDRYLKLWDTESG 468
F G F + D +L+D +G
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTG 281
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 88/249 (35%), Gaps = 63/249 (25%)
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-----YGHRQAVRDICFNNT 447
+ S+ ++ P L++ S D LW+V R + + GH V + N+
Sbjct: 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSL 216
Query: 448 GTN-FISAGYDRYLKLWDTESGECISRFTSRKV---------AYCVKFHPDEDKQHLDIP 497
N FIS D ++LWD R TSR V VKF PD Q
Sbjct: 217 NANMFISGSCDTTVRLWDL-------RITSRAVRTYHGHEGDINSVKFFPD--GQRFGTG 267
Query: 498 VD---MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV 554
D + T H + P+ DN++ I +
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRN-------DNELPIVT------------------ 302
Query: 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW----KAHDGVCISTLWHPHEP 610
S+ FS L +G ++G CY+WD ++ +H+G IS L +
Sbjct: 303 -----SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-ISCLGLSSDG 356
Query: 611 SKVVTAGWD 619
S + T WD
Sbjct: 357 SALCTGSWD 365
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 547 KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606
+T +GH +G SLD++P+ ++++S DG+ +W+ T++ K H + +
Sbjct: 60 RTLQGH--SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 607 PHEPSKVVTAGWDAA 621
P+ S V G D+A
Sbjct: 118 PNGQS-VACGGLDSA 131
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 94/262 (35%), Gaps = 47/262 (17%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN 389
T +GH+ + ++ W P+ + ++S S D R+ +W ++ H V + F
Sbjct: 61 TLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQK-THAIKLHCPWVMECAFAP 118
Query: 390 TGTNFI-----SAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
G + SA F S+ D + + V H+ Y Q V D
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQ----ADRDGNMPVSRVLTGHK---GYASSCQYVPD--- 168
Query: 445 NNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504
T I+ D+ LWD +G+ IS F S ++ +
Sbjct: 169 --QETRLITGSGDQTCVLWDVTTGQRISIFGS------------------------EFPS 202
Query: 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564
T + +S N S D + ++ R +T+ GH G S+ F
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDL--RITSRAVRTYHGH--EGDINSVKFF 258
Query: 565 PDMSYLISGDADGKCYIWDWKT 586
PD +G DG C ++D +T
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRT 280
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR----QAVRD 384
H +GH + I A+ W P+ ++L + S D RVKLW+V + C+ T H QAV
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY----YGHRQAVR 440
NT N F LL+ D R++LW + Y ++ ++
Sbjct: 240 A---NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK 296
Query: 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPD 488
+ F+ Y + ++ SGE I+ K C F +
Sbjct: 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 47/225 (20%)
Query: 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--------------HRQAVRDICF--N 445
P +LS D + L+++ R ++YY HR +V + + +
Sbjct: 53 PVEGRYMLSGGSDGVIVLYDLENSSR--QSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110
Query: 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV------- 498
+TG F S+ +D+ LK+WDT + + F + Y P K H + V
Sbjct: 111 DTGM-FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK-HCLVAVGTRGPKV 168
Query: 499 ---DMK-----YIADPTMHSMPAVTSSPNNKW-LACQSMDNKILIFSA---------LNR 540
D+K +I + AV+ SP + LA S D+++ ++ L++
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 541 FKLNRKKTFEGHMVA--GYACSLDFSPDMSYLISGDADGKCYIWD 583
+ + E A G L F+ D +L++ D + +W+
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 16/195 (8%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
T+EGH + + + PK S +D VK+W + + G +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-------- 185
Query: 389 NTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
G N++ ++P +++ S D +K+W+ Y+ CV T GH V F+ T
Sbjct: 186 --GVNYVD---YYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 448 GTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
IS D LK+W++ + + + ++C+ HP K ++ D +
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299
Query: 507 TMHSMPAVTSSPNNK 521
+ P ++ P K
Sbjct: 300 LGNDEPTLSLDPVGK 314
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 91/236 (38%), Gaps = 50/236 (21%)
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNF 451
++I +I P ++L S S D VKLW +T+ GH V + FN + F
Sbjct: 98 DYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 452 ISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
S DR +K+W G+ FT R V Y V ++P DK ++ D D
Sbjct: 157 ASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASD-----DL 208
Query: 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-AGYACSLDFSP 565
T+ T S C + T EGHM +A F P
Sbjct: 209 TIKIWDYQTKS-------CVA--------------------TLEGHMSNVSFAV---FHP 238
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWD 619
+ +ISG DG IW+ T K+ K CI+T HP + +G+D
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT--HPTGRKNYIASGFD 292
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 106/285 (37%), Gaps = 52/285 (18%)
Query: 351 LLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410
+L+ RV+LW Y+ + VR+ VR FI+ W ++
Sbjct: 28 VLTTLYSGRVELWN-YETQVEVRSIQVTETPVR-------AGKFIARKNW-------IIV 72
Query: 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470
S D R++++ Y V + H +R I + T +S D +KLW+ E+
Sbjct: 73 GSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 471 ISR-FTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528
+ + F + CV F+P DP+ + + + W QS
Sbjct: 132 LEQTFEGHEHFVMCVAFNP----------------KDPSTFASGCLDRTVK-VWSLGQST 174
Query: 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
N F L + + V Y PD Y+I+ D IWD++T
Sbjct: 175 PN----------FTLTTGQERGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKS 219
Query: 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633
+ H ++HP P ++ +G + T K+ +++ K+
Sbjct: 220 CVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV 262
>pdb|3A98|B Chain B, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|D Chain D, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 203
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 810 PIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
PI+ELKE I PEI++LI+QQRL LVEGT F K ++R
Sbjct: 8 PILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNAR 44
>pdb|2VSZ|A Chain A, Crystal Structure Of The Elmo1 Ph Domain
pdb|2VSZ|B Chain B, Crystal Structure Of The Elmo1 Ph Domain
Length = 149
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 808 AKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSR 846
PI+ELKE I PEI++LI+QQRL LVEGT F K ++R
Sbjct: 4 GSPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNAR 42
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 56/241 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY---KERRCV---RTYYGHRQAVRDIC 386
GH K + W P LLS S D + LW++ KE R + + GH V D+
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 387 F------------------------NNTG---------TNFISAIRWFPKSAHLLLSCSM 413
+ NNT T ++ + + P S +L + S
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + ++ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD------LS 352
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 353 KIGEEQST--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402
Query: 533 L 533
+
Sbjct: 403 M 403
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++H++E H I ++W P + +L S D R+ +W++ K G Q+ D
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 362
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ F + G T IS W P ++ S S D +++W++
Sbjct: 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
HT + HT ++ + + P S +L + S D V LW++ + + ++ H+
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE------- 323
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-------------EHRCVRTYYGH 435
I ++W P + +L S D R+ +W++ K + + GH
Sbjct: 324 ------IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 436 RQAVRDICFNNTGTNFI-SAGYDRYLKLW 463
+ D +N I S D +++W
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 56/241 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY---KERRCV---RTYYGHRQAVRDIC 386
GH K + W P LLS S D + LW++ KE R + + GH V D+
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 387 F------------------------NNTG---------TNFISAIRWFPKSAHLLLSCSM 413
+ NNT T ++ + + P S +L + S
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + ++ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD------LS 354
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 355 KIGEEQST--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 404
Query: 533 L 533
+
Sbjct: 405 M 405
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++H++E H I ++W P + +L S D R+ +W++ K G Q+ D
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 364
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ F + G T IS W P ++ S S D +++W++
Sbjct: 365 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
HT + HT ++ + + P S +L + S D V LW++ + + ++ H+
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE------- 325
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-------------EHRCVRTYYGH 435
I ++W P + +L S D R+ +W++ K + + GH
Sbjct: 326 ------IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
Query: 436 RQAVRDICFNNTGTNFI-SAGYDRYLKLW 463
+ D +N I S D +++W
Sbjct: 380 TAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 36/224 (16%)
Query: 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYL 460
+ K LL SCS D +W R + T GH + I + ++ D +
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98
Query: 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA---------DPTMHSM 511
KLWD +G+C++ + S V+F P + + MK D H +
Sbjct: 99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158
Query: 512 PAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM---VAGYACS-------- 560
V+ P +K + + +D + + + K GH ++ Y S
Sbjct: 159 TKVSEEPIHKIITHEGLDA-----ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS 213
Query: 561 ----------LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
+ FSPD++Y I+ D ++ D T ++ KK++
Sbjct: 214 IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 92/241 (38%), Gaps = 56/241 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY---KERRCV---RTYYGHRQAVRDIC 386
GH K + W P LLS S D + LW++ KE R + + GH V D+
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 387 F------------------------NNTG---------TNFISAIRWFPKSAHLLLSCSM 413
+ NNT T ++ + + P S +L + S
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + ++ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD------LS 356
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 357 KIGEEQST--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 406
Query: 533 L 533
+
Sbjct: 407 M 407
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++H++E H I ++W P + +L S D R+ +W++ K G Q+ D
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--------IGEEQSTED 366
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ F + G T IS W P ++ S S D +++W++
Sbjct: 367 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
HT + HT ++ + + P S +L + S D V LW++ + + ++ H+
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE------- 327
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK 424
I ++W P + +L S D R+ +W++ K
Sbjct: 328 ------IFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
T+EGH + + + PK S +D VK+W + + G +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-------- 185
Query: 389 NTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
G N++ ++P +++ S D +K+W+ Y+ CV T GH V F+ T
Sbjct: 186 --GVNYVD---YYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 448 GTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHL 494
IS D LK+W++ + + + ++C+ HP K ++
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 91/236 (38%), Gaps = 50/236 (21%)
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNF 451
++I +I P ++L S S D VKLW +T+ GH V + FN + F
Sbjct: 98 DYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 452 ISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
S DR +K+W G+ FT R V Y V ++P DK ++ D D
Sbjct: 157 ASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASD-----DL 208
Query: 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-AGYACSLDFSP 565
T+ T S C + T EGHM +A F P
Sbjct: 209 TIKIWDYQTKS-------CVA--------------------TLEGHMSNVSFAV---FHP 238
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWD 619
+ +ISG DG IW+ T K+ K CI+T HP + +G+D
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT--HPTGRKNYIASGFD 292
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 58/288 (20%)
Query: 351 LLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410
+L+ RV+LW Y+ + VR+ VR FI+ W ++
Sbjct: 28 VLTTLYSGRVELWN-YETQVEVRSIQVTETPVR-------AGKFIARKNW-------IIV 72
Query: 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470
S D R++++ Y V + H +R I + T +S D +KLW+ E+
Sbjct: 73 GSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 471 ISR-FTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528
+ + F + CV F+P DP+ A +
Sbjct: 132 LEQTFEGHEHFVMCVAFNP----------------KDPST--------------FASGCL 161
Query: 529 DNKILIFS---ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585
D + ++S + F L + + V Y PD Y+I+ D IWD++
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQ 216
Query: 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633
T + H ++HP P ++ +G + T K+ +++ K+
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
T+EGH + + + PK S +D VK+W + + G +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-------- 185
Query: 389 NTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
G N++ ++P +++ S D +K+W+ Y+ CV T GH V F+ T
Sbjct: 186 --GVNYVD---YYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 448 GTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHL 494
IS D LK+W++ + + + ++C+ HP K ++
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 91/236 (38%), Gaps = 50/236 (21%)
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNF 451
++I +I P ++L S S D VKLW +T+ GH V + FN + F
Sbjct: 98 DYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 452 ISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506
S DR +K+W G+ FT R V Y V ++P DK ++ D D
Sbjct: 157 ASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASD-----DL 208
Query: 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-AGYACSLDFSP 565
T+ T S C + T EGHM +A F P
Sbjct: 209 TIKIWDYQTKS-------CVA--------------------TLEGHMSNVSFAV---FHP 238
Query: 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWD 619
+ +ISG DG IW+ T K+ K CI+T HP + +G+D
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT--HPTGRKNYIASGFD 292
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 58/288 (20%)
Query: 351 LLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410
+L+ RV+LW Y+ + VR+ VR FI+ W ++
Sbjct: 28 VLTTLYSGRVELWN-YETQVEVRSIQVTETPVR-------AGKFIARKNW-------IIV 72
Query: 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470
S D R++++ Y V + H +R I + T +S D +KLW+ E+
Sbjct: 73 GSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 471 ISR-FTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528
+ + F + CV F+P DP+ A +
Sbjct: 132 LEQTFEGHEHFVMCVAFNP----------------KDPST--------------FASGCL 161
Query: 529 DNKILIFS---ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585
D + ++S + F L + + V Y PD Y+I+ D IWD++
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQ 216
Query: 586 TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633
T + H ++HP P ++ +G + T K+ +++ K+
Sbjct: 217 TKSCVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNSSTYKV 262
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 42/314 (13%)
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
F + +CS D +VK+W+ + V TY H + V F N K
Sbjct: 672 FSSDDSYIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTN-------------K 717
Query: 404 SAHLLLSC-SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKL 462
S HLLL+ S D +KLW++ + C T +GH +V F+ S D L+L
Sbjct: 718 SNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 463 WDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522
WD S RK +F + D+ V +K + S+ +K
Sbjct: 777 WDVRSA------NERKSINVKRFFLSSEDPPEDVEVIVKCCS----------WSADGDKI 820
Query: 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW 582
+ + NK+L+F L T GH C DFSP + + +W
Sbjct: 821 IV--AAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYC--DFSPYDHLAVIALSQYCVELW 874
Query: 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV--KIAVEMEKQ 640
+ + + H ++ P + S +TA D T +V + V A+ ++++
Sbjct: 875 NIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQE 932
Query: 641 VPQLYQFNQTLTLS 654
+ ++Q N+T+ L+
Sbjct: 933 IDVVFQENETMVLA 946
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
VHT++ H++ ++ + KS HLLL+ S D +KLW++ ++ C T +GH
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGH-------- 749
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
TN ++ R+ P LL SCS D ++LW+V
Sbjct: 750 -----TNSVNHCRFSPDD-ELLASCSADGTLRLWDV 779
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQH 493
H AV CF+ G S G D+ L+++ E+GE + + + C F D D
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYI 679
Query: 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK---ILIFSALNRF-----KLNR 545
D K + T +++ + C NK +L+ + N F LN+
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Query: 546 KK---TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587
K+ T GH + C FSPD L S ADG +WD ++
Sbjct: 740 KECRNTMFGHTNSVNHCR--FSPDDELLASCSADGTLRLWDVRSA 782
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 66/311 (21%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKERRCV---RTYYGHRQAVR 383
+T GHT ++ R+ P LL SCS D ++LW+V ER+ + R +
Sbjct: 744 NTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 802
Query: 384 DI-------CFNNTGTNFI--------------------------SAIRW--FPKSAHL- 407
D+ ++ G I S I++ F HL
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 862
Query: 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
+++ S C V+LW + + V GH V + F+ G++F++A D+ +++W+T+
Sbjct: 863 VIALSQYC-VELWNIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Query: 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIPVD----MKYIADPT--MHSMPAVTSS---- 517
C + K V F +E + + VD ++ IA T + +P S
Sbjct: 921 -VCKNSAIVLKQEIDVVFQENET---MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 518 -PNNKWLACQSMDNKILIFSALNRFKLNRK-KTFEGHMVAGYACSLDFSPDMSYLISGDA 575
P+ +++A D I I N NR + GH A + F+ D LIS
Sbjct: 977 SPHLEYVAFGDEDGAIKIIELPN----NRVFSSGVGHKKA--VRHIQFTADGKTLISSSE 1030
Query: 576 DGKCYIWDWKT 586
D +W+W+T
Sbjct: 1031 DSVIQVWNWQT 1041
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
+ +V GH + + + P + L + S D +++WE ++ C + +Q + D
Sbjct: 879 RLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWET--KKVCKNSAIVLKQEI-D 934
Query: 385 ICF-----------NNTGTNFISA----IRWFPK--------SAHL--LLSCSMDCRVKL 419
+ F N G I+ I + P+ S HL + D +K+
Sbjct: 935 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 994
Query: 420 WEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI 471
E+ +R + GH++AVR I F G IS+ D +++W+ ++G+ +
Sbjct: 995 IEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 28/133 (21%)
Query: 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR-------------WFPK 403
D +K+ E+ R + GH++AVR I F G IS+ +
Sbjct: 989 DGAIKIIEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1047
Query: 404 SAHL-------------LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450
AH LLS S D VK+W V R R + H+ V ++ T
Sbjct: 1048 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATK 1106
Query: 451 FISAGYDRYLKLW 463
F S D+ K+W
Sbjct: 1107 FSSTSADKTAKIW 1119
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
+ + P ++ S + + +A D + +F A KL K E ++ C+
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CA 671
Query: 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
FS D SY+ + AD K IWD T KL + H
Sbjct: 672 --FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 705
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 28/188 (14%)
Query: 284 EKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRW 343
+K + HI+ D G++ + D + + D FL + H + + R
Sbjct: 1010 KKAVRHIQFTAD--GKTLISSSEDSVIQVWNWQTGDYVFL--------QAHQETVKDFRL 1059
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
S LLS S D VK+W V R R + H+ V ++ T F S
Sbjct: 1060 LQDSR--LLSWSFDGTVKVWNVIT-GRIERDFTCHQGTVLSCAISSDATKFSST------ 1110
Query: 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
S D K+W + + GH VR F+ G + + +++W
Sbjct: 1111 --------SADKTAKIWS-FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 464 DTESGECI 471
+ G+ +
Sbjct: 1162 NVSDGQLL 1169
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN 393
HT + ++ P + L +S + D KLW+V +E C +T+ GH + ICF G
Sbjct: 194 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNA 251
Query: 394 F-------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
F I+++ F KS LLL+ D +W+
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDA 310
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K R GH V + + G + +D +LK+W+
Sbjct: 311 LKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
+ R ++ ++T GH+ YA + + D L+S DGK IWD TT
Sbjct: 51 VGRIQMRTRRTLRGHLAKIYA--MHWGTDSRLLVSASQDGKLIIWDSYTTN 99
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 107/326 (32%), Gaps = 76/326 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------------------ 371
T GH I A+ W S LL+S S D ++ +W+ Y +
Sbjct: 61 TLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 372 -----------------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
++T G+ + R++ + T ++S R+ + +++ S D
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ--IVTSSGD 174
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
LW++ + + T+ GH V + F+S D KLWD G C F
Sbjct: 175 TTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
T + + A+ PN A S D +
Sbjct: 234 TGHE------------------------------SDINAICFFPNGNAFATGSDDATCRL 263
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
F +L T+ + S+ FS L++G D C +WD
Sbjct: 264 FDLRADQEL---MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDA 620
HD +S L + V T WD+
Sbjct: 321 GHDNR-VSCLGVTDDGMAVATGSWDS 345
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 425 EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484
+ R RT GH + + + +SA D L +WD+ +T+ KV
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS--------YTTNKV----- 101
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKL 543
H IP+ ++ +P+ ++AC +DN I++ R +
Sbjct: 102 -HA--------IPLRSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
+ GH GY F D + +++ D C +WD +T + + H G +S
Sbjct: 145 RVSRELAGH--TGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 201
Query: 604 LWHPHEPSKVVTAGWDAATAKVQD 627
P +++ +G A+AK+ D
Sbjct: 202 SLAP--DTRLFVSGACDASAKLWD 223
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN 393
HT + ++ P + L +S + D KLW+V +E C +T+ GH + ICF G
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNA 240
Query: 394 F-------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
F I+++ F KS LLL+ D +W+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDA 299
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K R GH V + + G + +D +LK+W+
Sbjct: 300 LKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
+ R ++ ++T GH+ YA + + D L+S DGK IWD TT
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYA--MHWGTDSRLLVSASQDGKLIIWDSYTTN 88
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 107/326 (32%), Gaps = 76/326 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------------------ 371
T GH I A+ W S LL+S S D ++ +W+ Y +
Sbjct: 50 TLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 372 -----------------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
++T G+ + R++ + T ++S R+ + +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ--IVTSSGD 163
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
LW++ + + T+ GH V + F+S D KLWD G C F
Sbjct: 164 TTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
T + + A+ PN A S D +
Sbjct: 223 TGHE------------------------------SDINAICFFPNGNAFATGSDDATCRL 252
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
F +L T+ + S+ FS L++G D C +WD
Sbjct: 253 FDLRADQEL---MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDA 620
HD +S L + V T WD+
Sbjct: 310 GHDNR-VSCLGVTDDGMAVATGSWDS 334
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 425 EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484
+ R RT GH + + + +SA D L +WD+ +T+ KV
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS--------YTTNKV----- 90
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKL 543
H IP+ ++ +P+ ++AC +DN I++ R +
Sbjct: 91 -HA--------IPLRSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
+ GH GY F D + +++ D C +WD +T + + H G +S
Sbjct: 134 RVSRELAGH--TGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 604 LWHPHEPSKVVTAGWDAATAKVQD 627
P +++ +G A+AK+ D
Sbjct: 191 SLAP--DTRLFVSGACDASAKLWD 212
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN 393
HT + ++ P + L +S + D KLW+V +E C +T+ GH + ICF G
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNA 240
Query: 394 F-------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
F I+++ F KS LLL+ D +W+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDA 299
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K R GH V + + G + +D +LK+W+
Sbjct: 300 LKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
+ R ++ ++T GH+ YA + + D L+S DGK IWD TT
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYA--MHWGTDSRLLVSASQDGKLIIWDSYTTN 88
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 107/326 (32%), Gaps = 76/326 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------------------ 371
T GH I A+ W S LL+S S D ++ +W+ Y +
Sbjct: 50 TLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 372 -----------------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
++T G+ + R++ + T ++S R+ + +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ--IVTSSGD 163
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
LW++ + + T+ GH V + F+S D KLWD G C F
Sbjct: 164 TTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
T + + A+ PN A S D +
Sbjct: 223 TGHE------------------------------SDINAICFFPNGNAFATGSDDATCRL 252
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
F +L T+ + S+ FS L++G D C +WD
Sbjct: 253 FDLRADQEL---MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDA 620
HD +S L + V T WD+
Sbjct: 310 GHDNR-VSCLGVTDDGMAVATGSWDS 334
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 425 EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484
+ R RT GH + + + +SA D L +WD+ +T+ KV
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS--------YTTNKV----- 90
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKL 543
H IP+ ++ +P+ ++AC +DN I++ R +
Sbjct: 91 -HA--------IPLRSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
+ GH GY F D + +++ D C +WD +T + + H G +S
Sbjct: 134 RVSRELAGH--TGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 604 LWHPHEPSKVVTAGWDAATAKVQD 627
P +++ +G A+AK+ D
Sbjct: 191 SLAP--DTRLFVSGACDASAKLWD 212
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN 393
HT + ++ P + L +S + D KLW+V +E C +T+ GH + ICF G
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNA 240
Query: 394 F-------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
F I+++ F KS LLL+ D +W+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDA 299
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K R GH V + + G + +D +LK+W+
Sbjct: 300 LKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 107/326 (32%), Gaps = 76/326 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------------------ 371
T GH I A+ W S LLLS S D ++ +W+ Y +
Sbjct: 50 TLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 372 -----------------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
++T G+ + R++ + T ++S R+ + +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ--IVTSSGD 163
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
LW++ + + T+ GH V + F+S D KLWD G C F
Sbjct: 164 TTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
T + + A+ PN A S D +
Sbjct: 223 TGHE------------------------------SDINAICFFPNGNAFATGSDDATCRL 252
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
F +L T+ + S+ FS L++G D C +WD
Sbjct: 253 FDLRADQEL---MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDA 620
HD +S L + V T WD+
Sbjct: 310 GHDNR-VSCLGVTDDGMAVATGSWDS 334
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
+ R ++ ++T GH+ YA + + D L+S DGK IWD TT
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYA--MHWGTDSRLLLSASQDGKLIIWDSYTTN 88
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 425 EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484
+ R RT GH + + + +SA D L +WD+ +T+ KV
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS--------YTTNKV----- 90
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKL 543
H IP+ ++ +P+ ++AC +DN I++ R +
Sbjct: 91 -HA--------IPLRSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
+ GH GY F D + +++ D C +WD +T + + H G +S
Sbjct: 134 RVSRELAGH--TGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 604 LWHPHEPSKVVTAGWDAATAKVQD 627
P +++ +G A+AK+ D
Sbjct: 191 SLAP--DTRLFVSGACDASAKLWD 212
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 35/162 (21%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTN 393
HT + ++ P + L +S + D KLW+V +E C +T+ GH + ICF G
Sbjct: 183 HTGDVMSLSLAPDT-RLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFPNGNA 240
Query: 394 F-------------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
F I+++ F KS LLL+ D +W+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDA 299
Query: 423 YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
K R GH V + + G + +D +LK+W+
Sbjct: 300 LKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 107/326 (32%), Gaps = 76/326 (23%)
Query: 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC------------------ 371
T GH I A+ W S LLLS S D ++ +W+ Y +
Sbjct: 50 TLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 372 -----------------VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414
++T G+ + R++ + T ++S R+ + +++ S D
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQ--IVTSSGD 163
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474
LW++ + + T+ GH V + F+S D KLWD G C F
Sbjct: 164 TTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 475 TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534
T + + A+ PN A S D +
Sbjct: 223 TGHE------------------------------SDINAICFFPNGNAFATGSDDATCRL 252
Query: 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594
F +L T+ + S+ FS L++G D C +WD
Sbjct: 253 FDLRADQEL---MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 595 AHDGVCISTLWHPHEPSKVVTAGWDA 620
HD +S L + V T WD+
Sbjct: 310 GHDNR-VSCLGVTDDGMAVATGSWDS 334
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
+ R ++ ++T GH+ YA + + D L+S DGK IWD TT
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYA--MHWGTDSRLLLSASQDGKLIIWDSYTTN 88
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 425 EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484
+ R RT GH + + + +SA D L +WD+ +T+ KV
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS--------YTTNKV----- 90
Query: 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR-FKL 543
H IP+ ++ +P+ ++AC +DN I++ R +
Sbjct: 91 -HA--------IPLRSSWVM--------TCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603
+ GH GY F D + +++ D C +WD +T + + H G +S
Sbjct: 134 RVSRELAGH--TGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190
Query: 604 LWHPHEPSKVVTAGWDAATAKVQD 627
P +++ +G A+AK+ D
Sbjct: 191 SLAP--DTRLFVSGACDASAKLWD 212
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 42/314 (13%)
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
F + +CS D +VK+W+ + V TY H + V F N K
Sbjct: 665 FSSDDSYIATCSADKKVKIWD-SATGKLVHTYDEHSEQVNCCHFTN-------------K 710
Query: 404 SAHLLLSC-SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKL 462
S HLLL+ S D +KLW++ + C T +GH +V F+ S D L+L
Sbjct: 711 SNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 463 WDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522
WD S RK +F + D+ V +K + S+ +K
Sbjct: 770 WDVRSA------NERKSINVKRFFLSSEDPPEDVEVIVKCCS----------WSADGDKI 813
Query: 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW 582
+ + NK+L+F L T GH C DFSP + + +W
Sbjct: 814 IV--AAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYC--DFSPYDHLAVIALSQYCVELW 867
Query: 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV--KIAVEMEKQ 640
+ + + H ++ P + S +TA D T +V + V A+ ++++
Sbjct: 868 NIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQE 925
Query: 641 VPQLYQFNQTLTLS 654
+ ++Q N+T+ L+
Sbjct: 926 IDVVFQENETMVLA 939
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
VHT++ H++ ++ + KS HLLL+ S D +KLW++ ++ C T +GH
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGH-------- 742
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
TN ++ R+ P LL SCS D ++LW+V
Sbjct: 743 -----TNSVNHCRFSPDD-ELLASCSADGTLRLWDV 772
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQH 493
H AV CF+ G S G D+ L+++ E+GE + + + C F D D
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYI 672
Query: 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK---ILIFSALNRF-----KLNR 545
D K + T +++ + C NK +L+ + N F LN+
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 546 KK---TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587
K+ T GH + C FSPD L S ADG +WD ++
Sbjct: 733 KECRNTMFGHTNSVNHCR--FSPDDELLASCSADGTLRLWDVRSA 775
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 66/311 (21%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV--YKERRCV---RTYYGHRQAVR 383
+T GHT ++ R+ P LL SCS D ++LW+V ER+ + R +
Sbjct: 737 NTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795
Query: 384 DI-------CFNNTGTNFI--------------------------SAIRW--FPKSAHL- 407
D+ ++ G I S I++ F HL
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA 855
Query: 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
+++ S C V+LW + + V GH V + F+ G++F++A D+ +++W+T+
Sbjct: 856 VIALSQYC-VELWNIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Query: 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIPVD----MKYIADPT--MHSMPAVTSS---- 517
C + K V F +E + + VD ++ IA T + +P S
Sbjct: 914 -VCKNSAIVLKQEIDVVFQENET---MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 518 -PNNKWLACQSMDNKILIFSALNRFKLNRK-KTFEGHMVAGYACSLDFSPDMSYLISGDA 575
P+ +++A D I I N NR + GH A + F+ D LIS
Sbjct: 970 SPHLEYVAFGDEDGAIKIIELPN----NRVFSSGVGHKKA--VRHIQFTADGKTLISSSE 1023
Query: 576 DGKCYIWDWKT 586
D +W+W+T
Sbjct: 1024 DSVIQVWNWQT 1034
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
+ +V GH + + + P + L + S D +++WE ++ C + +Q + D
Sbjct: 872 RLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWET--KKVCKNSAIVLKQEI-D 927
Query: 385 ICF-----------NNTGTNFISA----IRWFPK--------SAHL--LLSCSMDCRVKL 419
+ F N G I+ I + P+ S HL + D +K+
Sbjct: 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987
Query: 420 WEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI 471
E+ +R + GH++AVR I F G IS+ D +++W+ ++G+ +
Sbjct: 988 IEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 28/133 (21%)
Query: 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR-------------WFPK 403
D +K+ E+ R + GH++AVR I F G IS+ +
Sbjct: 982 DGAIKIIEL-PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040
Query: 404 SAHL-------------LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450
AH LLS S D VK+W V R R + H+ V ++ T
Sbjct: 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RIERDFTCHQGTVLSCAISSDATK 1099
Query: 451 FISAGYDRYLKLW 463
F S D+ K+W
Sbjct: 1100 FSSTSADKTAKIW 1112
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 501 KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560
+ + P ++ S + + +A D + +F A KL K E ++ C+
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC---CA 664
Query: 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
FS D SY+ + AD K IWD T KL + H
Sbjct: 665 --FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 28/188 (14%)
Query: 284 EKTILHIKDPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRW 343
+K + HI+ D G++ + D + + D FL + H + + R
Sbjct: 1003 KKAVRHIQFTAD--GKTLISSSEDSVIQVWNWQTGDYVFL--------QAHQETVKDFRL 1052
Query: 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403
S LLS S D VK+W V R R + H+ V ++ T F S
Sbjct: 1053 LQDSR--LLSWSFDGTVKVWNVIT-GRIERDFTCHQGTVLSCAISSDATKFSST------ 1103
Query: 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
S D K+W + + GH VR F+ G + + +++W
Sbjct: 1104 --------SADKTAKIWS-FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 464 DTESGECI 471
+ G+ +
Sbjct: 1155 NVSDGQLL 1162
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 56/241 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE---VYKERRCVRT---YYGHRQAVRDIC 386
GH K + W P + LLS S D + LW+ V KE + V + GH V D+
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 387 F------------------------NNTG---------TNFISAIRWFPKSAHLLLSCSM 413
+ NNT T ++ + + P S +L + S
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + ++ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD------LS 348
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 349 KIGEEQSP--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Query: 533 L 533
+
Sbjct: 399 M 399
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++H++E H I ++W P + +L S D R+ +W++ K G Q+ D
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK--------IGEEQSPED 358
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ F + G T IS W P ++ S S D +++W++
Sbjct: 359 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 27/149 (18%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
H+ + HT ++ + + P S +L + S D V LW++ + + ++ H+
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE------- 319
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-------------EHRCVRTYYGH 435
I ++W P + +L S D R+ +W++ K + + GH
Sbjct: 320 ------IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 436 RQAVRDICFN-NTGTNFISAGYDRYLKLW 463
+ D +N N S D +++W
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE------VYKERRCVRTYYGHRQAVRDIC 386
GHT + I W P + +++ S S DC V +WE V R V T GH
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-------- 130
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
T + + W P + ++LLS D + +W+V
Sbjct: 131 -----TKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 398 IRWFPKSAHLLLSCSMDCRVKLWE------VYKEHRCVRTYYGHRQAVRDICFNNTGTN- 450
I W P + +++ S S DC V +WE V V T GH + V + ++ T N
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 451 FISAGYDRYLKLWDTESGECI 471
+SAG D + +WD +G +
Sbjct: 147 LLSAGXDNVILVWDVGTGAAV 167
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 315 DTPPDRCFLP-KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373
+ P LP + V T EGHTK + + W P + ++LLS D + +W+V
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV-------- 161
Query: 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV---R 430
G AV + + + I ++ W A + SC D RV++ E K R
Sbjct: 162 ---GTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCR-DKRVRVIEPRKGTVVAEKDR 216
Query: 431 TYYGHRQAVRDICFNNTGTNFISAGY----DRYLKLWDTE 466
+ G R F + G ++ G+ +R + LWDT+
Sbjct: 217 PHEGTRPV--HAVFVSEG-KILTTGFSRMSERQVALWDTK 253
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 56/241 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY---KERRCVRT---YYGHRQAVRDIC 386
GH K + W + LLS S D V LW++ KE + V + GH V D+
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 387 FN---------------------------------NTGTNFISAIRWFPKSAHLLLSCSM 413
++ + T ++ + + P S +L + S
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + T+ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD------LS 350
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + A ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 351 KIGEEQSA--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Query: 533 L 533
+
Sbjct: 401 M 401
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++HT+E H I + W P + +L S D R+ +W++ K G Q+ D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK--------IGEEQSAED 360
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+ F + G T IS W P ++ S S D +++W++
Sbjct: 361 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 27/149 (18%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
H + HT ++ + + P S +L + S D V LW++ + + T+ H+
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE------- 321
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-------------EHRCVRTYYGH 435
I + W P + +L S D R+ +W++ K + + GH
Sbjct: 322 ------IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 436 RQAVRDICFN-NTGTNFISAGYDRYLKLW 463
+ D +N N S D +++W
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+C++ Y GH A+ ++ F+ P+ +LLLS S D ++LW + +
Sbjct: 142 QCIKHYVGHGNAINELKFH-------------PRDPNLLLSVSKDHALRLWNIQTDTLVA 188
Query: 430 --RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
GHR V ++ G +S G D LKLW S
Sbjct: 189 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNT 390
GH I+ +++ P+ +LLLS S D ++LW + + GHR V ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
G ++SC MD +KLW +
Sbjct: 209 GEK--------------IMSCGMDHSLKLWRI 226
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWE------VYKERRCVRTYYGHRQAVRDIC 386
GHT + I W P + +++ S S DC V +WE V R V T GH
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-------- 130
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
T + + W P + ++LLS D + +W+V
Sbjct: 131 -----TKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 398 IRWFPKSAHLLLSCSMDCRVKLWE------VYKEHRCVRTYYGHRQAVRDICFNNTGTN- 450
I W P + +++ S S DC V +WE V V T GH + V + ++ T N
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 451 FISAGYDRYLKLWDTESGECI 471
+SAG D + +WD +G +
Sbjct: 147 LLSAGCDNVILVWDVGTGAAV 167
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 315 DTPPDRCFLP-KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373
+ P LP + V T EGHTK + + W P + ++LLS D + +W+V
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV-------- 161
Query: 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV---R 430
G AV + + + I ++ W A + SC D RV++ E K R
Sbjct: 162 ---GTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCR-DKRVRVIEPRKGTVVAEKDR 216
Query: 431 TYYGHRQAVRDICFNNTGTNFISAGY----DRYLKLWDTE 466
+ G R F + G ++ G+ +R + LWDT+
Sbjct: 217 PHEGTRPV--HAVFVSEG-KILTTGFSRMSERQVALWDTK 253
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 56/240 (23%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY---KERRCVRT---YYGHRQAVRDIC 386
GH K + W + LLS S D V LW++ KE + V + GH V D+
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 387 FN---------------------------------NTGTNFISAIRWFPKSAHLLLSCSM 413
++ + T ++ + + P S +L + S
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECIS 472
D V LW++ + T+ H+ + + ++ + T S+G DR L +WD +S
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD------LS 350
Query: 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532
+ + A ED + D P ++ +I + + +PN W+ C ++ I
Sbjct: 351 KIGEEQSA--------EDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 400
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K ++HT+E H I + W P + +L S D R+ +W++ K G Q+ D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK--------IGEEQSAED 360
Query: 385 -------ICFNNTG-TNFISAIRWFPKSAHLLLSCSMDCRVKLWE 421
+ F + G T IS W P ++ S S D ++W+
Sbjct: 361 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 329 HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
H + HT ++ + + P S +L + S D V LW++ + + T+ H+
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDE------- 321
Query: 389 NTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448
I + W P + +L S D R+ +W++ K G Q+ D
Sbjct: 322 ------IFQVHWSPHNETILASSGTDRRLNVWDLSK--------IGEEQSAEDAEDGPPE 367
Query: 449 TNFISAGY 456
FI G+
Sbjct: 368 LLFIHGGH 375
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+C++ Y GH A+ ++ F+ P+ +LLLS S D ++LW + +
Sbjct: 101 QCIKHYVGHGNAINELKFH-------------PRDPNLLLSVSKDHALRLWNIQTDTLVA 147
Query: 430 --RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
GHR V ++ G +S G D LKLW S
Sbjct: 148 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNT 390
GH I+ +++ P+ +LLLS S D ++LW + + GHR V ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
G ++SC MD +KLW +
Sbjct: 168 GEK--------------IMSCGMDHSLKLWRI 185
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+C++ Y GH A+ ++ F+ P+ +LLLS S D ++LW + +
Sbjct: 105 QCIKHYVGHGNAINELKFH-------------PRDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 430 --RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
GHR V ++ G +S G D LKLW S
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNT 390
GH I+ +++ P+ +LLLS S D ++LW + + GHR V ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
G ++SC MD +KLW +
Sbjct: 172 GEK--------------IMSCGMDHSLKLWRI 189
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+C++ Y GH A+ ++ F+ P+ +LLLS S D ++LW + +
Sbjct: 106 QCIKHYVGHGNAINELKFH-------------PRDPNLLLSVSKDHALRLWNIQTDTLVA 152
Query: 430 --RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
GHR V ++ G +S G D LKLW S
Sbjct: 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNT 390
GH I+ +++ P+ +LLLS S D ++LW + + GHR V ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
G ++SC MD +KLW +
Sbjct: 173 GEK--------------IMSCGMDHSLKLWRI 190
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 370 RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV 429
+C++ Y GH A+ ++ F+ P+ +LLLS S D ++LW + +
Sbjct: 105 QCIKHYVGHGNAINELKFH-------------PRDPNLLLSVSKDHALRLWNIQTDTLVA 151
Query: 430 --RTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
GHR V ++ G +S G D LKLW S
Sbjct: 152 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNT 390
GH I+ +++ P+ +LLLS S D ++LW + + GHR V ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
G ++SC MD +KLW +
Sbjct: 172 GEK--------------IMSCGMDHSLKLWRI 189
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Query: 350 LLLSCSMDCRVKLWEVYKERRCV--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407
++++CS D + +W++ R GHR AV + F++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----------------KY 268
Query: 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
++S S D +K+W VRT GH++ + C +S D ++LWD E
Sbjct: 269 IVSASGDRTIKVWNT-STCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 468 GECISRFTSR-KVAYCVKF 485
G C+ ++ C++F
Sbjct: 326 GACLRVLEGHEELVRCIRF 344
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 30/145 (20%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
V T GH +GI+ +++ + L++S S D ++LW++ + C+R GH + VR I F
Sbjct: 289 VRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIRF 344
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--------HRCVRTYYGHRQAV 439
+N ++S + D ++K+W++ C+RT H V
Sbjct: 345 DN----------------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388
Query: 440 RDICFNNTGTNFISAGYDRYLKLWD 464
+ F+ +S+ +D + +WD
Sbjct: 389 FRLQFDE--FQIVSSSHDDTILIWD 411
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 27/204 (13%)
Query: 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467
++S D +K+W+ C R GH +V +C I+ D +++WD +
Sbjct: 146 IVSGLRDNTIKIWD-KNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNT 202
Query: 468 GECIS------------RFTSRKVAYCVKFHPDEDKQHLDI--PVDMKYIADPTMHSMPA 513
GE ++ RF + + C K D D+ P D+ H
Sbjct: 203 GEMLNTLIHHCEAVLHLRFNNGMMVTCSK---DRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 514 VTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573
++K++ S D I ++ N +T GH G AC L + + ++SG
Sbjct: 260 NVVDFDDKYIVSASGDRTIKVW---NTSTCEFVRTLNGHK-RGIAC-LQYRDRL--VVSG 312
Query: 574 DADGKCYIWDWKTTKLFKKWKAHD 597
+D +WD + + + H+
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHE 336
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 14/163 (8%)
Query: 443 CFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE--------DKQHL 494
C +S D +K+WD + EC R + + DE D
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLEC-KRILTGHTGSVLCLQYDERVIITGSSDSTVR 196
Query: 495 DIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM 553
V+ + + +H AV NN + S D I ++ + + ++ GH
Sbjct: 197 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256
Query: 554 VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596
A +DF D Y++S D +W+ T + + H
Sbjct: 257 AA--VNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA 397
+ ++ W AH+ S +W++ ++ + Y N+ +S
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY--------TSPNSGIKQQLSV 219
Query: 398 IRWFPKSAHLLLSCSM---DCRVKLWEVYKEHRCVRTY-YGHRQAVR--DICFNNTGTNF 451
+ W PK++ + + + D + +W++ + ++T GH++ + D C +
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-L 278
Query: 452 ISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPD 488
+S+G D + LW+ ES E +S+F +R + KF P+
Sbjct: 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE 316
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLW 363
+GH KGI ++ W + HLLLS D V LW
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 90/244 (36%), Gaps = 26/244 (10%)
Query: 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KEHRCVRTY--YGHRQAVRDICFNNTGTNF 451
++ + W + L+ S S V+LWE+ KE V + Y H V+ + + GT
Sbjct: 97 VTDVAWVSEKGILVASDSG--AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA 154
Query: 452 ISAGYDRYLKLWDTESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510
+S G D +K+WD + + + CV P +D L D + + T
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 511 MPA--------------VTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVA 555
PA VT P + AC + + + N + +
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNIT 273
Query: 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615
G A S SP +L S D + D +++F+ +H W P + SK T
Sbjct: 274 GLAYSYHSSP---FLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTT 329
Query: 616 AGWD 619
GWD
Sbjct: 330 VGWD 333
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 71/190 (37%), Gaps = 18/190 (9%)
Query: 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRD 384
K + ++ H+ ++ + P + LSC D R+ LW+ K + R D
Sbjct: 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---------D 221
Query: 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF 444
C ++T +++ W P+ V L + K +T H Q + + +
Sbjct: 222 FCASDT---IPTSVTWHPEKDDTFACGDETGNVSLVNI-KNPDSAQTSAVHSQNITGLAY 277
Query: 445 NNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYI 503
+ + F+ S D + + D + E + R V + P + + + D K +
Sbjct: 278 SYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
Query: 504 ADPTMHSMPA 513
H +P+
Sbjct: 338 ----HHHLPS 343
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAVRDIC 386
V+ + H + + S + L+ S D +KLW+ + ++T+ G H VR +
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ---NDKVIKTFSGIHNDVVRHLA 191
Query: 387 FNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446
+ G +FIS CS D +KL + + +RTY GH V I
Sbjct: 192 VVDDG-HFIS--------------CSNDGLIKLVDXHTGD-VLRTYEGHESFVYCIKLLP 235
Query: 447 TGTNFISAGYDRYLKLWDTESG 468
G + +S G DR +++W E+G
Sbjct: 236 NG-DIVSCGEDRTVRIWSKENG 256
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 37/184 (20%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN----TGTN 393
IS++ W + +L + S V+LW+V +++R +R H V + +N+ +G+
Sbjct: 150 ISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKR-LRNMTSHSARVGSLSWNSYILSSGSR 207
Query: 394 F------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC- 428
+ +RW P HL S D V +W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGW 266
Query: 429 --VRTYYGHRQAVRDICFNNTGTNFISAG---YDRYLKLWDTESGECISRFTSRKVAYCV 483
++T+ H+ AV+ + + +N ++ G DR++++W+ SG C+S + +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 326
Query: 484 KFHP 487
+ P
Sbjct: 327 LWSP 330
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC--S 355
GR +D N+ P + ++P + T+ H + A+ W P +++L + +
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVP---LQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-D 414
D +++W V C+ H Q +C +I W P L+
Sbjct: 299 SDRHIRIWNVCSGA-CLSAVDAHSQ----VC----------SILWSPHYKELISGHGFAQ 343
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
++ +W+ Y V GH V + + G SA D L+LW
Sbjct: 344 NQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 28/188 (14%)
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVA-------------YCVKFHPDEDKQHLDI 496
N ++ D + LW SG+ + + Y + Q D+
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG 556
K + + T HS + S N+ L+ S I R + T GH +
Sbjct: 177 Q-QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV--RVAEHHVATLSGH--SQ 231
Query: 557 YACSLDFSPDMSYLISGDADGKCYIW-------DWKTTKLFKKWKAHDGVCISTLWHPHE 609
C L ++PD +L SG D +W W + F + H G + W P +
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---HQGAVKAVAWCPWQ 288
Query: 610 PSKVVTAG 617
+ + T G
Sbjct: 289 SNVLATGG 296
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 37/184 (20%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN----TGTN 393
IS++ W + +L + S V+LW+V +++R +R H V + +N+ +G+
Sbjct: 161 ISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKR-LRNMTSHSARVGSLSWNSYILSSGSR 218
Query: 394 F------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC- 428
+ +RW P HL S D V +W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGW 277
Query: 429 --VRTYYGHRQAVRDICFNNTGTNFISAG---YDRYLKLWDTESGECISRFTSRKVAYCV 483
++T+ H+ AV+ + + +N ++ G DR++++W+ SG C+S + +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 337
Query: 484 KFHP 487
+ P
Sbjct: 338 LWSP 341
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)
Query: 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC--S 355
GR +D N+ P + ++P + T+ H + A+ W P +++L + +
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVP---LQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-D 414
D +++W V C+ H Q +C +I W P L+
Sbjct: 310 SDRHIRIWNVCSGA-CLSAVDAHSQ----VC----------SILWSPHYKELISGHGFAQ 354
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
++ +W+ Y V GH V + + G SA D L+LW
Sbjct: 355 NQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 28/188 (14%)
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVA-------------YCVKFHPDEDKQHLDI 496
N ++ D + LW SG+ + + Y + Q D+
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAG 556
K + + T HS + S N+ L+ S I R + T GH +
Sbjct: 188 Q-QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV--RVAEHHVATLSGH--SQ 242
Query: 557 YACSLDFSPDMSYLISGDADGKCYIW-------DWKTTKLFKKWKAHDGVCISTLWHPHE 609
C L ++PD +L SG D +W W + F + H G + W P +
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---HQGAVKAVAWCPWQ 299
Query: 610 PSKVVTAG 617
+ + T G
Sbjct: 300 SNVLATGG 307
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 59/192 (30%)
Query: 333 GHTKGISAIRWFPKSAH--LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR------- 383
GH G+ W K AH +L+S S D V++W++ K+ C + GH VR
Sbjct: 160 GHDGGV----WALKYAHGGILVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 384 -DICFNNTGT-------------------------------------------NFISAIR 399
+I + TG+ ++++R
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY 459
++++S S D + +W+V + +C+ GH + +++ ISA D
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 460 LKLWDTESGECI 471
+++WD E+GE +
Sbjct: 334 IRIWDLENGELM 345
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 36/254 (14%)
Query: 434 GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493
GH V + + + G +S DR +++WD + G C F + +
Sbjct: 160 GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGH----------NSTVRC 208
Query: 494 LDIP--VDMKYIA----DPTMH--SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR 545
LDI ++KYI D T+H +P +S P++ + D ++ +
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG----EEHDYPLVFHTP------EE 258
Query: 546 KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW 605
F G + A S + ++SG D +WD K H ST++
Sbjct: 259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318
Query: 606 HPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQ--VPQLYQFNQTLTLSSIIQEICSG 663
HE + ++A D T ++ D ++ ++ + L + + +S+ G
Sbjct: 319 -DHERKRCISASMD-TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRG 376
Query: 664 WSLSDSEQYALQFS 677
W D+ Y+ +FS
Sbjct: 377 W---DANDYSRKFS 387
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 16/227 (7%)
Query: 408 LLSCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFNNTGTNFISAGYDRYLKLWD 464
+L S V+LWE+ + + + Y H V + ++GT +S D +K+WD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 465 TESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV---TSSPN- 519
+S + + CV P +D L D + + T PA S+P
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215
Query: 520 -NKWLACQSMDNKILIFSALNRFK--LNRKKT---FEGHMVAGYACSLDFSP-DMSYLIS 572
LA +++ +F N ++ K T + + L FSP + +L S
Sbjct: 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
Query: 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619
D + D ++LF+ +AH W P S + T GWD
Sbjct: 276 LSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGWD 321
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICF 387
+ ++ H ++ + P + LSCS D R+ LW+ RC + I
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT----RCPK-------PASQIGC 210
Query: 388 NNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT 447
+ G +++ W P+ + + + + V L + K CV + H Q V + F+
Sbjct: 211 SAPG-YLPTSLAWHPQQSEVFVFGDENGTVSLVDT-KSTSCVLSSAVHSQCVTGLVFSPH 268
Query: 448 GTNFISA 454
F+++
Sbjct: 269 SVPFLAS 275
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 59/191 (30%)
Query: 333 GHTKGISAIRWFPKSAH--LLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR------- 383
GH G+ W K AH +L+S S D V++W++ K+ C + GH VR
Sbjct: 160 GHDGGV----WALKYAHGGILVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 384 -DICFNNTGTN------------------------------------FISAIRWFPKS-- 404
+I + TG+ F+ +R S
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 405 -----AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRY 459
++++S S D + +W+V + +C+ GH + +++ ISA D
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 460 LKLWDTESGEC 470
+++WD E+GE
Sbjct: 334 IRIWDLENGEL 344
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 36/254 (14%)
Query: 434 GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493
GH V + + + G +S DR +++WD + G C F + +
Sbjct: 160 GHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGH----------NSTVRC 208
Query: 494 LDIP--VDMKYIA----DPTMH--SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR 545
LDI ++KYI D T+H +P +S P++ + D ++ +
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG----EEHDYPLVFHTP------EE 258
Query: 546 KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW 605
F G + A S + ++SG D +WD K H ST++
Sbjct: 259 NPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY 318
Query: 606 HPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQ--VPQLYQFNQTLTLSSIIQEICSG 663
HE + ++A D T ++ D ++ ++ + L + + +S+ G
Sbjct: 319 -DHERKRCISASXD-TTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRG 376
Query: 664 WSLSDSEQYALQFS 677
W D+ Y+ +FS
Sbjct: 377 W---DANDYSRKFS 387
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 17/187 (9%)
Query: 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE 466
+ SC D + +W+++ + VR + GH I +N GT + G D ++ WD
Sbjct: 155 VCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIP---VDMKYIADPTMHSMP-------AVTS 516
G + + + + + P + + + V++ ++ P + + ++
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD 576
+ KW DN LN ++ + + S D S D Y+++G D
Sbjct: 274 AYCGKWFVSTGKDN------LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327
Query: 577 GKCYIWD 583
K +++
Sbjct: 328 KKATVYE 334
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 37/169 (21%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNN----TGTN 393
IS++ W + +L + S V+LW+V +++R +R H V + +N+ +G+
Sbjct: 70 ISSVAWIKEGNYLAVGTS-SAEVQLWDVQQQKR-LRNMTSHSARVGSLSWNSYILSSGSR 127
Query: 394 F------------------------ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC- 428
+ +RW P HL S D V +W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGW 186
Query: 429 --VRTYYGHRQAVRDICFNNTGTNFISAG---YDRYLKLWDTESGECIS 472
++T+ H+ AV+ + + +N ++ G DR++++W+ SG C+S
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 22/169 (13%)
Query: 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSC--S 355
GR +D N+ P + ++P + T+ H + A+ W P +++L + +
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVP---LQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-D 414
D +++W V C+ H Q + +I W P L+
Sbjct: 219 SDRHIRIWNVCSGA-CLSAVDAHSQ--------------VCSILWSPHYKELISGHGFAQ 263
Query: 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463
++ +W+ Y V GH V + + G SA D L+LW
Sbjct: 264 NQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 548 TFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIW-------DWKTTKLFKKWKAHDGVC 600
T GH + C L ++PD +L SG D +W W + F + H G
Sbjct: 145 TLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---HQGAV 199
Query: 601 ISTLWHPHEPSKVVTAG 617
+ W P + + + T G
Sbjct: 200 KAVAWCPWQSNVLATGG 216
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 382 VRDICFNNTGTNFISAIRWFPKS--AHLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQA 438
++DI ++ + I + + P + + L++ S V+ WEV + + + H
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP 88
Query: 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECI 471
V D+C+++ G+ +A D+ K+WD S + I
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGT 392
GH IS + F + LLLS S D +++W +YGH Q++
Sbjct: 245 GHHGPISVLE-FNDTNKLLLSASDDGTLRIWH-GGNGNSQNCFYGHSQSI---------- 292
Query: 393 NFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422
+SA W ++SCSMD V+LW +
Sbjct: 293 --VSA-SWVGDDK--VISCSMDGSVRLWSL 317
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA 397
+++++W + L + + V +++V + + +RT GH+ V + +N
Sbjct: 137 VASVKWSHDGSFLSVGLG-NGLVDIYDVESQTK-LRTMAGHQARVGCLSWNR-------- 186
Query: 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457
H+L S S + +V + + T GH V + + + G S G D
Sbjct: 187 --------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238
Query: 458 RYLKLWDTESGECISRFTS-------RKVAYC 482
+++WD S I +FT + VA+C
Sbjct: 239 NVVQIWDARS--SIPKFTKTNHNAAVKAVAWC 268
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 22/193 (11%)
Query: 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH 509
N ++ +R + +W+ +SG + + + Y D L + + + +
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164
Query: 510 SMPAV-TSSPNNKWLACQSMDNKILIFSALN--------RFKLNRKKTFEGHMVAGYACS 560
S + T + + + C S + +L + + R ++ T +GH + C
Sbjct: 165 SQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH--SSEVCG 222
Query: 561 LDFSPDMSYLISGDADGKCYIWDWKTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAG-- 617
L + D L SG D IWD +++ F K H+ + W P + + + T G
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGT 281
Query: 618 -------WDAATA 623
W+AAT
Sbjct: 282 MDKQIHFWNAATG 294
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 433 YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492
+ H V + FN++G SAG+D L+ WD ++ E I+ +C +ED
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN----MHCDDIEIEEDIL 353
Query: 493 HLD 495
+D
Sbjct: 354 AVD 356
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 433 YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492
+ H V + FN++G SAG+D L+ WD ++ E I+ +C +ED
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN----MHCDDIEIEEDIL 343
Query: 493 HLD 495
+D
Sbjct: 344 AVD 346
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 408 LLSCSMDCRVKLWEVYKE-HRCVRTYYGHRQAVR--DICFNNTGTNFISAGYDRYLKLWD 464
L +CS D +K++EV E H+ + T GH V D GT S YD + +W
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 465 TESG 468
E+G
Sbjct: 86 EENG 89
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 328 VHTWEGHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
+ T GH + + W PK +L SCS D +V +W+ R I
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------------QIA 95
Query: 387 FNNTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDIC 443
+ + +++++W P + LLL S D +V + E +KE+ H V
Sbjct: 96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSAS 154
Query: 444 F---------NNTGT----NFISAGYDRYLKLW 463
+ + GT F++ G D +K+W
Sbjct: 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 499 DMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558
++K I P + +V S N +L K++ +S N F+L ++ H A A
Sbjct: 484 EVKTIVHPA--EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT-AKVA 540
Query: 559 CSLDFSPDMSYLISGDADGKCYIWD 583
C + +SPD L +G D +W+
Sbjct: 541 C-VSWSPDNVRLATGSLDNSVIVWN 564
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 408 LLSCSMDCRVKLWEVYKE-HRCVRTYYGHRQAVR--DICFNNTGTNFISAGYDRYLKLWD 464
L +CS D +K++EV E H+ + T GH V D GT S YD + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 465 TESG 468
E+G
Sbjct: 84 EENG 87
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 30/148 (20%)
Query: 333 GHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
GH + + W PK +L SCS D +V +W+ R I +
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------------QIAVHAVH 98
Query: 392 TNFISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICF---- 444
+ +++++W P LLL S D +V + E +KE+ H V +
Sbjct: 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 445 -----NNTGT----NFISAGYDRYLKLW 463
+ GT F++ G D +K+W
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 408 LLSCSMDCRVKLWEVYKE-HRCVRTYYGHRQAV--RDICFNNTGTNFISAGYDRYLKLWD 464
L +CS D +K++EV E H+ + T GH V D GT S YD + +W
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 465 TESG 468
E+G
Sbjct: 84 EENG 87
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 328 VHTWEGHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDIC 386
+ T GH + + W PK +L SCS D +V +W+ R I
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------------QIA 93
Query: 387 FNNTGTNFISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV------ 439
+ + +++++W P + LLL S D +V + E +KE+ A+
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSAS 152
Query: 440 -------RDICFNNT--GTNFISAGYDRYLKLWDTES 467
D N T F++ G D +K+W S
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 408 LLSCSMDCRVKLWEVYKE-HRCVRTYYGHRQAVR--DICFNNTGTNFISAGYDRYLKLWD 464
+ +CS D +K++EV E H+ + T GH V D GT S YD + +W
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 465 TESG 468
E+G
Sbjct: 84 EENG 87
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 30/148 (20%)
Query: 333 GHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
GH + + W PK +L SCS D +V +W+ R I +
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS------------QIAVHAVH 98
Query: 392 TNFISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICF---- 444
+ +++++W P +LL S D +V + E +KE+ H V +
Sbjct: 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 445 -----NNTGT----NFISAGYDRYLKLW 463
+ GT F++ G D +K+W
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 410 SCSMDCRVKLWEVYKE-HRCVRTYYGHRQAVR--DICFNNTGTNFISAGYDRYLKLWDTE 466
+CS D +K++EV E H+ + T GH V D GT S YD + +W E
Sbjct: 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE 85
Query: 467 SG 468
+G
Sbjct: 86 NG 87
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 30/148 (20%)
Query: 333 GHTKGISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTG 391
GH + + W PK +L SCS D +V +W+ R I +
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWS------------QIAVHAVH 98
Query: 392 TNFISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDICF---- 444
+ +++++W P LL S D +V + E +KE+ H V +
Sbjct: 99 SASVNSVQWAPHEYGPXLLVASSDGKVSVVE-FKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 445 -----NNTGT----NFISAGYDRYLKLW 463
+ GT F++ G D +K+W
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588
H V+ C D+ L+S D K + WDWKT K
Sbjct: 242 HFVSSICCGKDY-----LLLSAGGDDKIFAWDWKTGK 273
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 330 TWEGHTKGISAIRWF-PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
+W H I AI W P+ ++ S S D VKLWE ++ G R +C
Sbjct: 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRW--NKLCTL 106
Query: 389 NTGTNFISAIRWFPKSAHLLLSC 411
N + ++++ P L L+C
Sbjct: 107 NDSKGSLYSVKFAPAHLGLKLAC 129
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 330 TWEGHTKGISAIRWF-PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
+W H I AI W P+ ++ S S D VKLWE ++ G R +C
Sbjct: 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRW--NKLCTL 106
Query: 389 NTGTNFISAIRWFPKSAHLLLSC 411
N + ++++ P L L+C
Sbjct: 107 NDSKGSLYSVKFAPAHLGLKLAC 129
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 330 TWEGHTKGISAIRWF-PKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFN 388
+W H I AI W P+ ++ S S D VKLWE ++ G R +C
Sbjct: 50 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRW--NKLCTL 104
Query: 389 NTGTNFISAIRWFPKSAHLLLSC 411
N + ++++ P L L+C
Sbjct: 105 NDSKGSLYSVKFAPAHLGLKLAC 127
>pdb|4HHT|A Chain A, T. Maritima Rnase H2 G21s In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 237
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 646 QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVL---RLA 702
Q ++ + +SI+ ++ +S+ + QFS +K Y T+++ NEI+ VL RL+
Sbjct: 124 QKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLS 183
Query: 703 FSA--SKTADDILSKLSDKNASLEEK 726
F DD+L + +K E +
Sbjct: 184 FEPVLELLTDDLLREFFEKGLISENR 209
>pdb|3O3G|A Chain A, T. Maritima Rnase H2 In Complex With Nucleic Acid
Substrate And Calcium Ions
Length = 222
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 646 QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVL---RLA 702
Q ++ + +SI+ ++ +S+ + QFS +K Y T+++ NEI+ VL RL+
Sbjct: 124 QKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLS 183
Query: 703 FSA--SKTADDILSKLSDKNASLEEK 726
F DD+L + +K E +
Sbjct: 184 FEPVLELLTDDLLREFFEKGLISENR 209
>pdb|3O3F|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
Substrate And Magnesium Ions
pdb|3O3H|A Chain A, T. Maritima Rnase H2 D107n In Complex With Nucleic Acid
Substrate And Manganese Ions
Length = 222
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 646 QFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVL---RLA 702
Q ++ + +SI+ ++ +S+ + QFS +K Y T+++ NEI+ VL RL+
Sbjct: 124 QKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLS 183
Query: 703 FSA--SKTADDILSKLSDKNASLEEK 726
F DD+L + +K E +
Sbjct: 184 FEPVLELLTDDLLREFFEKGLISENR 209
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTG 391
H K ++ + P L + S+D VK+W++ + R Y HR V CF+ G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 392 TNFIS 396
++
Sbjct: 309 ARLLT 313
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 549 FEGHMVAGYACSLDFSP--DMSYLISGDADGKCYIWDW 584
F GH + ++ FSP YL SGD GK +W W
Sbjct: 59 FTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTG 391
H K ++ + P L + S+D VK+W++ + R Y HR V CF+ G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 392 TNFIS 396
++
Sbjct: 309 ARLLT 313
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 549 FEGHMVAGYACSLDFSP--DMSYLISGDADGKCYIWDW 584
F GH + ++ FSP YL SGD GK +W W
Sbjct: 59 FTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTG 391
H K ++ + P L + S+D VK+W++ + R Y HR V CF+ G
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 392 TNFIS 396
++
Sbjct: 310 ARLLT 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,198,614
Number of Sequences: 62578
Number of extensions: 1284857
Number of successful extensions: 4363
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3472
Number of HSP's gapped (non-prelim): 453
length of query: 1019
length of database: 14,973,337
effective HSP length: 108
effective length of query: 911
effective length of database: 8,214,913
effective search space: 7483785743
effective search space used: 7483785743
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)