Query psy307
Match_columns 1019
No_of_seqs 1129 out of 4729
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:56:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.3E-38 4.5E-43 390.2 48.0 402 293-726 25-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.9E-36 9.9E-41 365.1 45.7 406 293-726 23-537 (577)
3 1vyh_C Platelet-activating fac 100.0 8.7E-37 3E-41 355.2 36.4 288 328-725 101-408 (410)
4 1vyh_C Platelet-activating fac 100.0 1.5E-36 5.1E-41 353.3 38.2 291 294-625 116-407 (410)
5 2ymu_A WD-40 repeat protein; u 100.0 1.3E-35 4.6E-40 359.3 45.3 376 293-725 187-577 (577)
6 3ow8_A WD repeat-containing pr 100.0 6.6E-36 2.3E-40 336.0 38.5 272 296-625 46-317 (321)
7 3ow8_A WD repeat-containing pr 100.0 4E-36 1.4E-40 337.8 35.7 294 326-727 23-320 (321)
8 1got_B GT-beta; complex (GTP-b 100.0 2.1E-35 7.1E-40 334.4 41.7 274 294-625 63-339 (340)
9 3frx_A Guanine nucleotide-bind 100.0 2.7E-35 9.1E-40 330.5 37.8 303 326-726 8-315 (319)
10 1got_B GT-beta; complex (GTP-b 100.0 4.5E-35 1.5E-39 331.6 39.7 292 324-725 44-340 (340)
11 4gqb_B Methylosome protein 50; 100.0 1.5E-35 5.2E-40 336.5 35.7 281 293-625 37-327 (344)
12 2ynn_A Coatomer subunit beta'; 100.0 5.8E-35 2E-39 325.3 39.1 275 293-625 20-298 (304)
13 1nr0_A Actin interacting prote 100.0 1.3E-34 4.4E-39 354.7 42.4 313 293-626 66-564 (611)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-35 2.3E-39 330.9 35.5 308 326-726 6-333 (345)
15 2pbi_B Guanine nucleotide-bind 100.0 3.3E-34 1.1E-38 326.7 39.3 275 294-625 72-353 (354)
16 2ynn_A Coatomer subunit beta'; 100.0 4.5E-34 1.5E-38 318.1 38.5 258 326-636 4-265 (304)
17 2pbi_B Guanine nucleotide-bind 100.0 6.7E-34 2.3E-38 324.2 38.0 291 326-725 55-354 (354)
18 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-33 3.4E-38 321.3 37.3 285 293-626 23-332 (345)
19 4g56_B MGC81050 protein; prote 100.0 5.1E-34 1.7E-38 325.6 33.8 281 293-627 49-341 (357)
20 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-34 3E-38 375.3 40.3 402 293-726 622-1156(1249)
21 2hes_X YDR267CP; beta-propelle 100.0 1.2E-33 4E-38 318.7 35.5 297 325-726 4-326 (330)
22 4ery_A WD repeat-containing pr 100.0 8.1E-33 2.8E-37 308.1 41.3 280 325-625 13-308 (312)
23 4gqb_B Methylosome protein 50; 100.0 4.2E-34 1.5E-38 324.6 30.9 287 333-726 28-329 (344)
24 4g56_B MGC81050 protein; prote 100.0 5.2E-34 1.8E-38 325.5 30.8 309 301-727 19-342 (357)
25 3iz6_a 40S ribosomal protein R 100.0 1.3E-33 4.3E-38 325.0 33.9 265 325-626 56-372 (380)
26 2xzm_R RACK1; ribosome, transl 100.0 1.1E-32 3.7E-37 312.3 39.5 277 326-625 12-336 (343)
27 3frx_A Guanine nucleotide-bind 100.0 1.2E-32 4E-37 309.0 38.2 271 297-625 29-313 (319)
28 1pgu_A Actin interacting prote 100.0 3.5E-32 1.2E-36 330.9 45.3 399 293-726 25-612 (615)
29 1erj_A Transcriptional repress 100.0 3E-32 1E-36 315.0 40.7 273 333-626 62-386 (393)
30 4aow_A Guanine nucleotide-bind 100.0 3.3E-32 1.1E-36 305.3 37.8 301 326-726 29-335 (340)
31 2hes_X YDR267CP; beta-propelle 100.0 3.4E-32 1.2E-36 306.8 36.8 273 300-625 26-324 (330)
32 3vl1_A 26S proteasome regulato 100.0 7.6E-33 2.6E-37 321.0 30.6 292 293-626 63-362 (420)
33 2pm9_A Protein WEB1, protein t 100.0 2.5E-33 8.7E-38 324.0 26.1 366 292-726 18-412 (416)
34 3mkq_A Coatomer beta'-subunit; 100.0 9.6E-32 3.3E-36 339.3 37.6 278 293-627 20-300 (814)
35 3dm0_A Maltose-binding peripla 100.0 1.2E-31 4.1E-36 333.4 37.4 313 326-726 373-691 (694)
36 3dwl_C Actin-related protein 2 100.0 3.5E-33 1.2E-37 319.1 21.2 251 330-629 6-281 (377)
37 2pm7_B Protein transport prote 100.0 1.7E-31 5.8E-36 296.2 34.1 263 328-626 2-282 (297)
38 1r5m_A SIR4-interacting protei 100.0 2.2E-31 7.5E-36 307.4 35.6 335 331-726 41-423 (425)
39 2oaj_A Protein SNI1; WD40 repe 100.0 2E-31 6.9E-36 339.7 37.5 414 293-726 24-659 (902)
40 1gxr_A ESG1, transducin-like e 100.0 3.3E-30 1.1E-34 287.9 40.4 302 293-625 16-333 (337)
41 3bg1_A Protein SEC13 homolog; 100.0 1.5E-31 5.1E-36 299.6 28.3 265 330-626 8-290 (316)
42 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-30 3.7E-35 345.7 40.5 376 327-728 607-1034(1249)
43 3zwl_B Eukaryotic translation 100.0 1.8E-30 6.1E-35 293.7 35.4 315 326-726 23-344 (369)
44 2j04_B YDR362CP, TAU91; beta p 100.0 9.8E-32 3.3E-36 321.6 26.2 281 295-626 170-514 (524)
45 3mmy_A MRNA export factor; mRN 100.0 2.5E-30 8.4E-35 292.5 36.4 284 323-623 27-340 (368)
46 3dm0_A Maltose-binding peripla 100.0 2.4E-30 8.2E-35 321.6 39.1 272 297-625 394-689 (694)
47 3i2n_A WD repeat-containing pr 100.0 1.7E-30 5.9E-35 293.1 33.9 288 326-626 9-350 (357)
48 1r5m_A SIR4-interacting protei 100.0 3.5E-30 1.2E-34 297.3 37.2 307 293-625 52-421 (425)
49 4aow_A Guanine nucleotide-bind 100.0 1.1E-29 3.9E-34 284.6 39.9 276 294-625 46-333 (340)
50 3zwl_B Eukaryotic translation 100.0 1.1E-29 3.8E-34 287.2 39.7 272 293-625 39-342 (369)
51 3gre_A Serine/threonine-protei 100.0 9.1E-31 3.1E-35 305.8 30.9 295 294-625 71-436 (437)
52 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-30 5.7E-35 290.3 31.6 262 328-625 4-333 (351)
53 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-30 1.9E-34 290.9 35.8 294 294-625 16-357 (372)
54 1sq9_A Antiviral protein SKI8; 100.0 8.4E-31 2.9E-35 301.1 28.8 323 326-726 7-393 (397)
55 3gre_A Serine/threonine-protei 100.0 2.2E-31 7.5E-36 311.1 24.2 351 293-725 34-437 (437)
56 3odt_A Protein DOA1; ubiquitin 100.0 2.2E-29 7.5E-34 278.5 38.7 272 324-625 7-292 (313)
57 2j04_B YDR362CP, TAU91; beta p 100.0 3E-31 1E-35 317.3 24.7 317 351-725 176-514 (524)
58 3ei3_B DNA damage-binding prot 100.0 6.8E-30 2.3E-34 292.9 34.7 272 293-625 80-378 (383)
59 1k8k_C P40, ARP2/3 complex 41 100.0 5.4E-30 1.8E-34 291.1 33.5 252 330-626 3-271 (372)
60 1sq9_A Antiviral protein SKI8; 100.0 3.5E-30 1.2E-34 295.9 31.9 278 299-625 27-391 (397)
61 3ei3_B DNA damage-binding prot 100.0 4.4E-30 1.5E-34 294.5 32.5 246 326-625 64-335 (383)
62 3dwl_C Actin-related protein 2 100.0 7.6E-31 2.6E-35 299.7 24.6 296 293-625 18-375 (377)
63 3mkq_A Coatomer beta'-subunit; 100.0 8.8E-30 3E-34 321.4 36.5 254 326-632 4-261 (814)
64 3k26_A Polycomb protein EED; W 100.0 1.9E-29 6.4E-34 285.3 34.9 280 329-625 12-362 (366)
65 2xzm_R RACK1; ribosome, transl 100.0 2.2E-29 7.5E-34 285.1 35.3 270 296-588 37-342 (343)
66 3iz6_a 40S ribosomal protein R 100.0 4.3E-30 1.5E-34 295.4 29.6 253 293-588 115-377 (380)
67 4gga_A P55CDC, cell division c 100.0 7.3E-29 2.5E-33 289.0 40.3 269 298-625 116-391 (420)
68 4aez_A CDC20, WD repeat-contai 100.0 2.6E-29 9E-34 290.7 36.1 269 295-625 100-376 (401)
69 4e54_B DNA damage-binding prot 100.0 1.1E-30 3.7E-35 306.0 24.7 249 327-622 111-369 (435)
70 3jrp_A Fusion protein of prote 100.0 3.2E-29 1.1E-33 284.9 35.8 265 326-626 2-284 (379)
71 4h5i_A Guanine nucleotide-exch 100.0 8.7E-30 3E-34 291.5 31.2 282 336-626 15-340 (365)
72 3v7d_B Cell division control p 100.0 7.5E-29 2.6E-33 291.9 39.6 266 326-628 112-380 (464)
73 1pgu_A Actin interacting prote 100.0 8.6E-29 2.9E-33 301.0 41.2 299 293-625 123-610 (615)
74 3dw8_B Serine/threonine-protei 100.0 1.4E-29 4.8E-34 295.7 32.9 296 293-628 35-445 (447)
75 4ery_A WD repeat-containing pr 100.0 7.2E-29 2.5E-33 276.2 36.1 289 369-725 13-309 (312)
76 2pm7_B Protein transport prote 100.0 2.1E-29 7.1E-34 279.4 30.5 242 293-585 16-284 (297)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-28 4.6E-33 288.6 38.3 259 295-625 126-387 (445)
78 3vl1_A 26S proteasome regulato 100.0 3.5E-29 1.2E-33 290.1 32.7 277 293-626 104-416 (420)
79 2pm9_A Protein WEB1, protein t 100.0 3.3E-30 1.1E-34 297.8 23.3 281 293-625 74-410 (416)
80 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-29 1.2E-33 319.0 34.5 413 293-733 105-788 (902)
81 4ggc_A P55CDC, cell division c 100.0 4.2E-28 1.4E-32 269.1 37.9 272 294-625 33-311 (318)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-29 2.1E-33 287.5 32.0 273 301-625 50-338 (402)
83 4e54_B DNA damage-binding prot 100.0 1.5E-29 5.1E-34 296.3 25.7 282 294-630 127-430 (435)
84 3v7d_B Cell division control p 100.0 8E-28 2.8E-32 283.1 39.6 273 295-634 129-425 (464)
85 1yfq_A Cell cycle arrest prote 100.0 1E-28 3.4E-33 277.4 30.4 273 328-621 4-315 (342)
86 1erj_A Transcriptional repress 100.0 6.3E-28 2.1E-32 278.7 37.2 264 293-587 71-390 (393)
87 1p22_A F-BOX/WD-repeat protein 100.0 4.8E-28 1.6E-32 283.3 33.7 260 295-625 140-410 (435)
88 3dw8_B Serine/threonine-protei 100.0 2.5E-28 8.5E-33 285.2 31.0 259 333-631 26-374 (447)
89 1gxr_A ESG1, transducin-like e 100.0 4.2E-27 1.4E-31 262.8 39.7 264 294-584 59-335 (337)
90 3bg1_A Protein SEC13 homolog; 100.0 4.5E-29 1.5E-33 279.4 21.3 244 293-585 20-292 (316)
91 4a11_B DNA excision repair pro 100.0 3.1E-27 1.1E-31 271.2 35.9 300 307-631 22-366 (408)
92 2xyi_A Probable histone-bindin 100.0 8.3E-28 2.9E-32 281.1 30.7 252 328-626 121-407 (430)
93 4aez_A CDC20, WD repeat-contai 100.0 1.8E-27 6.1E-32 275.3 32.5 290 330-732 86-384 (401)
94 3i2n_A WD repeat-containing pr 100.0 1.4E-27 4.9E-32 269.1 29.6 281 293-589 25-356 (357)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-27 3.8E-32 276.9 27.9 243 337-625 36-295 (402)
96 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-28 1.2E-32 284.8 23.0 346 292-748 21-382 (588)
97 3jro_A Fusion protein of prote 100.0 1.4E-27 4.8E-32 299.4 29.4 265 328-629 2-284 (753)
98 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-26 9.2E-31 269.0 38.0 256 298-621 169-430 (445)
99 3k26_A Polycomb protein EED; W 100.0 4.8E-27 1.6E-31 265.5 28.4 264 298-586 34-366 (366)
100 4gq1_A NUP37; propeller, trans 100.0 6.2E-27 2.1E-31 270.5 28.8 309 297-626 29-386 (393)
101 1p22_A F-BOX/WD-repeat protein 100.0 3.5E-26 1.2E-30 267.4 35.3 288 328-727 126-413 (435)
102 4a11_B DNA excision repair pro 100.0 4.8E-26 1.6E-30 261.4 34.9 313 294-628 51-404 (408)
103 3jrp_A Fusion protein of prote 100.0 1.9E-26 6.5E-31 261.9 29.9 254 293-591 18-292 (379)
104 3f3f_A Nucleoporin SEH1; struc 99.9 3.2E-26 1.1E-30 255.6 30.1 253 294-593 19-344 (351)
105 4ggc_A P55CDC, cell division c 99.9 4.6E-25 1.6E-29 244.5 35.9 278 338-726 28-313 (318)
106 3lrv_A PRE-mRNA-splicing facto 99.9 3.3E-26 1.1E-30 258.9 26.6 271 293-626 43-330 (343)
107 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-25 4.2E-30 264.2 32.1 237 332-618 99-373 (450)
108 3odt_A Protein DOA1; ubiquitin 99.9 4.4E-25 1.5E-29 243.8 33.6 263 296-594 27-304 (313)
109 4gga_A P55CDC, cell division c 99.9 3.1E-25 1.1E-29 258.3 31.5 251 293-603 154-412 (420)
110 1l0q_A Surface layer protein; 99.9 5.4E-24 1.8E-28 244.1 39.5 273 299-635 3-280 (391)
111 2w18_A PALB2, fancn, partner a 99.9 1.3E-24 4.4E-29 240.3 32.5 259 338-625 42-353 (356)
112 4h5i_A Guanine nucleotide-exch 99.9 1.8E-25 6.1E-30 255.7 26.4 241 298-587 94-344 (365)
113 2xyi_A Probable histone-bindin 99.9 2E-25 6.9E-30 260.9 27.2 273 373-726 122-408 (430)
114 3bws_A Protein LP49; two-domai 99.9 7.5E-24 2.6E-28 246.4 35.3 296 301-625 92-428 (433)
115 3vu4_A KMHSV2; beta-propeller 99.9 6.4E-24 2.2E-28 241.7 33.0 270 325-625 9-332 (355)
116 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-24 1.2E-28 242.1 29.4 224 347-625 47-288 (343)
117 3jro_A Fusion protein of prote 99.9 7.3E-25 2.5E-29 274.7 26.0 250 293-589 16-288 (753)
118 4gq1_A NUP37; propeller, trans 99.9 4.9E-25 1.7E-29 254.5 22.6 256 294-584 97-387 (393)
119 2j04_A TAU60, YPL007P, hypothe 99.9 2.7E-25 9.3E-30 260.5 20.0 299 332-730 12-323 (588)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 6.6E-24 2.2E-28 249.4 30.4 242 336-625 5-335 (450)
121 3mmy_A MRNA export factor; mRN 99.9 2E-23 6.8E-28 235.6 31.9 288 367-726 27-344 (368)
122 3vu4_A KMHSV2; beta-propeller 99.9 4.4E-23 1.5E-27 234.8 28.2 238 362-626 3-268 (355)
123 1yfq_A Cell cycle arrest prote 99.9 1.4E-22 4.7E-27 227.3 31.2 244 373-638 5-290 (342)
124 2w18_A PALB2, fancn, partner a 99.9 8.8E-23 3E-27 225.7 28.4 245 300-584 56-355 (356)
125 3bws_A Protein LP49; two-domai 99.9 1E-21 3.5E-26 228.4 33.7 268 294-586 130-432 (433)
126 1l0q_A Surface layer protein; 99.9 8.9E-21 3E-25 217.3 37.7 245 293-599 38-288 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.3E-21 2.2E-25 221.9 27.4 268 309-609 94-409 (415)
128 1nir_A Nitrite reductase; hemo 99.9 5E-20 1.7E-24 221.6 34.6 317 293-638 144-522 (543)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.4E-20 1.5E-24 214.7 26.7 266 336-620 63-375 (415)
130 2ojh_A Uncharacterized protein 99.8 2.2E-19 7.6E-24 195.4 26.6 257 303-620 17-293 (297)
131 1ri6_A Putative isomerase YBHE 99.8 1.1E-18 3.9E-23 194.9 32.3 277 300-625 7-304 (343)
132 3u4y_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 194.3 30.6 267 341-625 3-300 (331)
133 1k32_A Tricorn protease; prote 99.8 4E-19 1.4E-23 230.8 28.7 269 328-625 196-498 (1045)
134 1nir_A Nitrite reductase; hemo 99.8 4.4E-18 1.5E-22 204.6 32.9 261 343-629 145-457 (543)
135 2ecf_A Dipeptidyl peptidase IV 99.8 3.4E-18 1.2E-22 213.4 30.5 297 292-620 42-447 (741)
136 3vgz_A Uncharacterized protein 99.8 2.5E-17 8.6E-22 185.1 33.7 268 293-619 47-334 (353)
137 2ecf_A Dipeptidyl peptidase IV 99.8 1.9E-18 6.4E-23 215.8 26.9 267 335-625 36-409 (741)
138 1k32_A Tricorn protease; prote 99.8 9.5E-18 3.3E-22 217.9 34.4 380 298-725 24-499 (1045)
139 1pby_B Quinohemoprotein amine 99.8 1E-17 3.4E-22 186.7 28.3 266 299-598 2-322 (337)
140 3hfq_A Uncharacterized protein 99.8 4.3E-17 1.5E-21 183.7 32.2 273 306-625 14-313 (347)
141 1xfd_A DIP, dipeptidyl aminope 99.8 4E-18 1.4E-22 212.1 25.9 301 292-620 22-432 (723)
142 1pby_B Quinohemoprotein amine 99.8 4.8E-17 1.7E-21 181.1 30.1 258 349-631 2-311 (337)
143 2z3z_A Dipeptidyl aminopeptida 99.8 2.5E-17 8.7E-22 204.4 30.6 296 298-630 35-435 (706)
144 3u4y_A Uncharacterized protein 99.8 2.2E-16 7.5E-21 176.2 32.1 267 297-588 9-306 (331)
145 3vgz_A Uncharacterized protein 99.8 3.9E-16 1.4E-20 175.3 34.4 246 334-632 39-305 (353)
146 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-16 6.1E-21 177.6 29.3 270 293-596 6-335 (349)
147 1xfd_A DIP, dipeptidyl aminope 99.8 2.6E-17 8.9E-22 204.7 24.5 259 337-620 18-329 (723)
148 2oit_A Nucleoporin 214KDA; NH2 99.7 7E-17 2.4E-21 188.8 22.8 202 336-587 37-279 (434)
149 3scy_A Hypothetical bacterial 99.7 2.5E-15 8.6E-20 170.3 33.5 278 305-630 24-339 (361)
150 1ri6_A Putative isomerase YBHE 99.7 9.2E-16 3.2E-20 171.2 29.1 230 349-626 6-259 (343)
151 3o4h_A Acylamino-acid-releasin 99.7 2.4E-16 8.2E-21 191.2 24.6 261 294-627 29-310 (582)
152 2ojh_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 168.3 24.8 213 353-619 17-237 (297)
153 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.4E-21 193.6 21.9 232 335-627 21-274 (582)
154 2z3z_A Dipeptidyl aminopeptida 99.7 3.7E-16 1.3E-20 193.9 23.8 258 338-620 28-378 (706)
155 1jmx_B Amine dehydrogenase; ox 99.7 2.2E-15 7.6E-20 168.7 27.5 235 341-632 5-327 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.7 2.8E-16 9.6E-21 183.6 18.2 216 358-621 23-264 (434)
157 3pe7_A Oligogalacturonate lyas 99.7 1.5E-15 5.1E-20 173.4 23.5 282 325-625 20-378 (388)
158 3scy_A Hypothetical bacterial 99.7 1.5E-14 5.1E-19 163.9 31.4 268 293-606 56-360 (361)
159 3hfq_A Uncharacterized protein 99.7 6.3E-15 2.1E-19 165.9 28.0 253 294-590 47-323 (347)
160 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.4E-14 4.6E-19 165.0 26.7 251 334-625 38-337 (365)
161 1z68_A Fibroblast activation p 99.7 9.5E-16 3.3E-20 190.7 18.4 278 293-625 22-387 (719)
162 1z68_A Fibroblast activation p 99.6 1.5E-15 5.3E-20 188.8 17.2 250 340-624 20-339 (719)
163 1q7f_A NHL, brain tumor CG1071 99.6 7.9E-13 2.7E-17 144.4 33.2 238 333-625 27-276 (286)
164 3fvz_A Peptidyl-glycine alpha- 99.6 3.6E-13 1.2E-17 151.0 29.4 250 336-626 24-319 (329)
165 2oiz_A Aromatic amine dehydrog 99.6 3E-13 1E-17 153.9 28.5 269 306-610 29-360 (361)
166 3c5m_A Oligogalacturonate lyas 99.6 4.5E-14 1.5E-18 161.1 21.3 273 327-624 22-377 (396)
167 4a5s_A Dipeptidyl peptidase 4 99.6 4E-14 1.4E-18 176.9 20.7 258 337-622 18-344 (740)
168 2dg1_A DRP35, lactonase; beta 99.5 5.5E-12 1.9E-16 140.8 32.6 267 293-619 12-300 (333)
169 1jof_A Carboxy-CIS,CIS-muconat 99.5 6.3E-13 2.1E-17 151.2 24.4 249 294-587 47-342 (365)
170 3azo_A Aminopeptidase; POP fam 99.5 3.1E-13 1.1E-17 166.2 23.5 271 328-619 16-356 (662)
171 4a5s_A Dipeptidyl peptidase 4 99.5 1.1E-12 3.8E-17 163.8 28.5 294 293-620 23-438 (740)
172 1q7f_A NHL, brain tumor CG1071 99.5 7E-12 2.4E-16 136.8 30.4 235 294-588 37-282 (286)
173 2oiz_A Aromatic amine dehydrog 99.5 4.1E-12 1.4E-16 144.5 29.0 256 356-636 29-342 (361)
174 3e5z_A Putative gluconolactona 99.5 8.8E-12 3E-16 137.0 29.9 240 326-622 18-280 (296)
175 3pe7_A Oligogalacturonate lyas 99.5 2.6E-12 8.8E-17 146.5 24.4 278 292-584 41-380 (388)
176 3fvz_A Peptidyl-glycine alpha- 99.5 4.8E-12 1.7E-16 141.8 25.2 240 293-586 30-322 (329)
177 2gop_A Trilobed protease; beta 99.5 1.4E-11 4.8E-16 138.2 27.7 248 337-627 16-328 (347)
178 3azo_A Aminopeptidase; POP fam 99.4 2.6E-12 8.9E-17 158.0 22.6 254 296-599 88-382 (662)
179 2xdw_A Prolyl endopeptidase; a 99.4 1.7E-11 6E-16 152.2 30.0 244 333-625 122-410 (710)
180 3dad_A FH1/FH2 domain-containi 99.4 8.7E-14 3E-18 150.3 3.8 206 621-836 19-311 (339)
181 1rwi_B Serine/threonine-protei 99.4 8.2E-11 2.8E-15 126.8 26.8 235 337-625 25-260 (270)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.5E-10 1.9E-14 123.0 31.2 243 332-625 14-295 (314)
183 3dsm_A Uncharacterized protein 99.3 4.7E-10 1.6E-14 125.6 30.9 235 336-629 44-301 (328)
184 3no2_A Uncharacterized protein 99.3 5.2E-10 1.8E-14 122.1 30.3 217 348-616 5-230 (276)
185 2dg1_A DRP35, lactonase; beta 99.3 1.1E-10 3.7E-15 130.2 24.5 234 336-625 6-259 (333)
186 2z2n_A Virginiamycin B lyase; 99.3 5.6E-09 1.9E-13 113.6 37.5 266 332-625 11-291 (299)
187 1qks_A Cytochrome CD1 nitrite 99.3 2.9E-09 9.9E-14 127.9 38.1 300 295-634 164-542 (567)
188 2bkl_A Prolyl endopeptidase; m 99.3 8.1E-11 2.8E-15 145.8 24.8 240 333-625 118-393 (695)
189 2gop_A Trilobed protease; beta 99.3 7.3E-10 2.5E-14 124.1 27.2 239 336-598 59-341 (347)
190 3g4e_A Regucalcin; six bladed 99.3 5.4E-09 1.9E-13 115.0 33.5 235 333-619 10-263 (297)
191 3e5z_A Putative gluconolactona 99.2 8E-10 2.7E-14 121.2 25.0 229 293-589 34-289 (296)
192 1rwi_B Serine/threonine-protei 99.2 6.9E-10 2.4E-14 119.4 23.8 235 294-589 31-267 (270)
193 3c5m_A Oligogalacturonate lyas 99.2 2.7E-10 9.3E-15 129.6 21.4 227 368-617 19-301 (396)
194 3no2_A Uncharacterized protein 99.2 3E-09 1E-13 116.0 28.5 238 296-596 3-262 (276)
195 1qks_A Cytochrome CD1 nitrite 99.2 4.3E-09 1.5E-13 126.3 31.5 249 348-616 167-458 (567)
196 2xdw_A Prolyl endopeptidase; a 99.2 1.9E-09 6.7E-14 133.7 27.3 239 292-588 130-416 (710)
197 3hrp_A Uncharacterized protein 99.2 1.3E-08 4.6E-13 117.4 32.0 240 336-625 131-406 (409)
198 2qc5_A Streptogramin B lactona 99.2 7.6E-08 2.6E-12 104.6 36.0 265 334-625 18-296 (300)
199 3dsm_A Uncharacterized protein 99.2 7E-09 2.4E-13 116.0 28.3 246 297-605 53-319 (328)
200 2ghs_A AGR_C_1268P; regucalcin 99.2 4.3E-08 1.5E-12 109.4 34.5 230 337-620 50-294 (326)
201 1yr2_A Prolyl oligopeptidase; 99.1 4.8E-09 1.6E-13 130.9 27.5 240 333-625 160-437 (741)
202 2z2n_A Virginiamycin B lyase; 99.1 8.7E-08 3E-12 104.1 34.2 263 294-588 22-297 (299)
203 2mad_H Methylamine dehydrogena 99.1 1.4E-07 4.9E-12 107.3 35.9 264 348-634 32-354 (373)
204 3sjl_D Methylamine dehydrogena 99.1 3.4E-08 1.2E-12 111.8 29.7 278 344-635 41-368 (386)
205 3dr2_A Exported gluconolactona 99.1 1.9E-08 6.6E-13 110.9 26.8 237 326-620 35-298 (305)
206 2mad_H Methylamine dehydrogena 99.1 2.3E-07 7.8E-12 105.6 35.6 260 296-593 30-357 (373)
207 3sjl_D Methylamine dehydrogena 99.1 8.7E-08 3E-12 108.5 31.3 279 293-608 39-384 (386)
208 2bkl_A Prolyl endopeptidase; m 99.1 5.6E-09 1.9E-13 129.3 23.4 244 292-596 126-406 (695)
209 3c75_H MADH, methylamine dehyd 99.0 6.9E-08 2.4E-12 111.1 29.9 258 358-636 99-408 (426)
210 1xip_A Nucleoporin NUP159; bet 99.0 6.4E-09 2.2E-13 118.2 18.9 173 337-572 39-230 (388)
211 2qe8_A Uncharacterized protein 99.0 6.8E-08 2.3E-12 108.6 27.1 262 336-622 17-314 (343)
212 1xip_A Nucleoporin NUP159; bet 99.0 5.1E-09 1.7E-13 119.0 17.8 172 381-616 39-231 (388)
213 2qc5_A Streptogramin B lactona 99.0 8.2E-07 2.8E-11 96.3 33.1 258 294-584 27-298 (300)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 1.4E-07 4.8E-12 103.5 27.0 235 294-586 25-299 (314)
215 3iuj_A Prolyl endopeptidase; h 98.9 1.2E-07 4.2E-12 117.1 25.8 240 332-625 125-401 (693)
216 1yr2_A Prolyl oligopeptidase; 98.9 1.2E-07 4.2E-12 118.1 25.5 197 378-625 161-389 (741)
217 3c75_H MADH, methylamine dehyd 98.9 5.6E-07 1.9E-11 103.6 28.7 250 308-593 99-409 (426)
218 1mda_H Methylamine dehydrogena 98.8 4.8E-07 1.7E-11 102.3 26.1 251 359-636 47-352 (368)
219 2hz6_A Endoplasmic reticulum t 98.8 2.5E-09 8.6E-14 121.8 5.7 188 348-595 9-201 (369)
220 1mda_H Methylamine dehydrogena 98.8 2.1E-07 7.3E-12 105.2 20.6 266 298-607 32-366 (368)
221 3g4e_A Regucalcin; six bladed 98.8 3.9E-06 1.3E-10 91.9 29.7 201 391-629 11-228 (297)
222 2ece_A 462AA long hypothetical 98.7 4E-06 1.4E-10 95.6 28.7 226 345-616 93-399 (462)
223 3dr2_A Exported gluconolactona 98.7 1.4E-06 4.9E-11 95.8 23.7 225 293-580 51-301 (305)
224 3hrp_A Uncharacterized protein 98.7 2.6E-06 9E-11 98.1 26.7 245 294-584 138-408 (409)
225 1yiq_A Quinohemoprotein alcoho 98.6 3.2E-06 1.1E-10 104.2 26.6 209 406-621 247-541 (689)
226 2ghs_A AGR_C_1268P; regucalcin 98.6 1.4E-05 4.9E-10 88.8 29.5 189 397-625 53-256 (326)
227 3iuj_A Prolyl endopeptidase; h 98.6 1.8E-06 6.1E-11 106.7 23.3 236 293-589 135-408 (693)
228 2iwa_A Glutamine cyclotransfer 98.6 2.4E-05 8.3E-10 83.8 27.9 194 382-625 23-233 (266)
229 3q7m_A Lipoprotein YFGL, BAMB; 98.6 4.6E-05 1.6E-09 86.1 31.7 247 348-625 103-374 (376)
230 3nol_A Glutamine cyclotransfer 98.5 1.9E-05 6.6E-10 83.7 25.0 176 406-617 54-244 (262)
231 2qe8_A Uncharacterized protein 98.5 4.3E-06 1.5E-10 93.7 20.7 203 380-626 17-275 (343)
232 1npe_A Nidogen, entactin; glyc 98.5 9E-05 3.1E-09 79.5 29.7 221 336-609 36-262 (267)
233 3hxj_A Pyrrolo-quinoline quino 98.5 1.3E-05 4.5E-10 88.3 23.0 213 349-625 108-320 (330)
234 3nok_A Glutaminyl cyclase; bet 98.5 1.7E-05 5.7E-10 84.3 22.3 175 406-617 66-254 (268)
235 1kb0_A Quinohemoprotein alcoho 98.4 4E-05 1.4E-09 94.1 29.0 194 416-616 284-538 (677)
236 2hz6_A Endoplasmic reticulum t 98.3 1.4E-07 4.8E-12 107.3 2.4 184 405-632 9-194 (369)
237 3mbr_X Glutamine cyclotransfer 98.3 0.00026 9.1E-09 74.4 26.4 176 406-617 32-223 (243)
238 2fp8_A Strictosidine synthase; 98.3 0.00045 1.6E-08 76.2 30.0 237 331-625 14-309 (322)
239 1kb0_A Quinohemoprotein alcoho 98.3 3.5E-05 1.2E-09 94.6 22.5 249 348-637 128-514 (677)
240 1yiq_A Quinohemoprotein alcoho 98.2 0.00011 3.8E-09 90.4 26.3 251 348-637 121-512 (689)
241 1fwx_A Nitrous oxide reductase 98.2 3E-05 1E-09 91.5 19.6 258 346-617 100-406 (595)
242 3hxj_A Pyrrolo-quinoline quino 98.2 6.7E-05 2.3E-09 82.5 20.7 255 293-625 26-280 (330)
243 2p4o_A Hypothetical protein; p 98.2 0.0011 3.6E-08 72.7 30.2 247 325-617 22-277 (306)
244 3q7m_A Lipoprotein YFGL, BAMB; 98.2 0.001 3.5E-08 74.9 30.6 254 348-633 53-340 (376)
245 2iwa_A Glutamine cyclotransfer 98.1 0.00038 1.3E-08 74.6 24.5 214 326-587 10-238 (266)
246 2ece_A 462AA long hypothetical 98.1 0.00058 2E-08 77.9 25.8 193 402-625 93-348 (462)
247 1npe_A Nidogen, entactin; glyc 98.1 0.0027 9.3E-08 67.7 30.1 188 399-625 42-234 (267)
248 1fwx_A Nitrous oxide reductase 98.0 0.00058 2E-08 80.5 24.6 210 406-625 103-357 (595)
249 1kv9_A Type II quinohemoprotei 98.0 0.00088 3E-08 82.0 27.2 195 416-617 271-520 (668)
250 3nok_A Glutaminyl cyclase; bet 97.9 0.00068 2.3E-08 71.9 20.8 197 326-573 44-253 (268)
251 3v64_C Agrin; beta propeller, 97.9 0.0082 2.8E-07 67.1 30.2 208 336-594 73-283 (349)
252 3v65_B Low-density lipoprotein 97.9 0.0089 3.1E-07 67.8 30.5 208 336-594 116-326 (386)
253 4a2l_A BT_4663, two-component 97.8 0.021 7.2E-07 71.2 35.8 261 335-625 214-522 (795)
254 4a2l_A BT_4663, two-component 97.8 0.023 7.9E-07 70.9 35.6 297 294-625 270-610 (795)
255 3nol_A Glutamine cyclotransfer 97.8 0.0022 7.5E-08 68.0 22.1 202 326-575 32-244 (262)
256 1ijq_A LDL receptor, low-densi 97.8 0.025 8.6E-07 62.1 31.7 212 335-594 29-246 (316)
257 3p5b_L Low density lipoprotein 97.8 0.027 9.4E-07 64.1 32.7 214 334-595 110-329 (400)
258 3tc9_A Hypothetical hydrolase; 97.8 0.011 3.7E-07 68.2 29.3 242 337-625 138-426 (430)
259 3qqz_A Putative uncharacterize 97.7 0.012 4.2E-07 62.4 26.6 216 330-584 21-251 (255)
260 3mbr_X Glutamine cyclotransfer 97.7 0.0066 2.2E-07 63.7 23.9 199 326-574 10-222 (243)
261 2xe4_A Oligopeptidase B; hydro 97.7 0.0056 1.9E-07 76.0 27.3 120 333-468 170-305 (751)
262 4hw6_A Hypothetical protein, I 97.7 0.028 9.4E-07 64.8 30.8 241 337-625 140-429 (433)
263 3v64_C Agrin; beta propeller, 97.7 0.089 3E-06 58.6 34.1 235 335-625 33-271 (349)
264 1k3i_A Galactose oxidase precu 97.7 0.003 1E-07 77.1 23.7 117 340-471 190-327 (656)
265 1kv9_A Type II quinohemoprotei 97.6 0.0018 6.1E-08 79.3 21.5 250 349-637 118-495 (668)
266 3qqz_A Putative uncharacterize 97.6 0.019 6.6E-07 60.8 25.9 212 375-625 22-249 (255)
267 2xe4_A Oligopeptidase B; hydro 97.6 0.0037 1.3E-07 77.6 23.1 197 381-625 175-394 (751)
268 2ad6_A Methanol dehydrogenase 97.5 0.024 8.2E-07 67.8 28.7 194 416-617 273-526 (571)
269 3sov_A LRP-6, low-density lipo 97.5 0.036 1.2E-06 61.0 27.4 208 337-594 36-246 (318)
270 3m0c_C LDL receptor, low-densi 97.5 0.084 2.9E-06 65.4 33.3 211 334-593 422-639 (791)
271 3v65_B Low-density lipoprotein 97.5 0.053 1.8E-06 61.3 29.1 233 337-625 78-314 (386)
272 3v9f_A Two-component system se 97.5 0.14 4.7E-06 63.7 35.4 260 336-625 211-520 (781)
273 1flg_A Protein (quinoprotein e 97.5 0.013 4.6E-07 70.2 25.1 196 415-618 291-549 (582)
274 3v9f_A Two-component system se 97.4 0.073 2.5E-06 66.2 31.3 260 334-625 311-607 (781)
275 2fp8_A Strictosidine synthase; 97.4 0.024 8.4E-07 62.1 24.0 178 406-617 31-247 (322)
276 1w6s_A Methanol dehydrogenase 97.3 0.045 1.5E-06 65.6 27.9 83 529-617 452-535 (599)
277 2xbg_A YCF48-like protein; pho 97.3 0.073 2.5E-06 58.6 27.8 259 336-625 36-318 (327)
278 2p4o_A Hypothetical protein; p 97.3 0.079 2.7E-06 57.6 27.6 225 293-577 38-279 (306)
279 1w6s_A Methanol dehydrogenase 97.3 0.021 7.3E-07 68.5 24.5 69 406-477 122-201 (599)
280 1ijq_A LDL receptor, low-densi 97.3 0.23 8E-06 54.2 31.1 216 358-626 10-235 (316)
281 2ism_A Putative oxidoreductase 97.3 0.087 3E-06 58.8 27.4 62 557-620 269-337 (352)
282 2ad6_A Methanol dehydrogenase 97.2 0.05 1.7E-06 65.1 26.3 245 348-635 115-499 (571)
283 1flg_A Protein (quinoprotein e 97.2 0.089 3.1E-06 63.0 27.8 59 576-637 465-523 (582)
284 3amr_A 3-phytase; beta-propell 97.1 0.075 2.6E-06 58.6 24.3 205 348-594 40-272 (355)
285 3sov_A LRP-6, low-density lipo 97.1 0.12 4.1E-06 56.7 26.1 191 398-625 40-234 (318)
286 3kya_A Putative phosphatase; s 97.0 0.18 6E-06 58.6 27.5 252 337-625 140-471 (496)
287 3p5b_L Low density lipoprotein 97.0 0.28 9.5E-06 55.7 28.9 217 357-625 91-316 (400)
288 2p9w_A MAL S 1 allergenic prot 97.0 0.027 9.4E-07 61.6 18.9 172 397-587 17-216 (334)
289 3a9g_A Putative uncharacterize 96.9 0.39 1.3E-05 53.4 28.3 224 336-574 29-330 (354)
290 4a0p_A LRP6, LRP-6, low-densit 96.9 0.36 1.2E-05 58.2 29.7 206 336-594 37-245 (628)
291 1n7d_A LDL receptor, low-densi 96.9 0.004 1.4E-07 76.5 12.4 212 336-595 406-623 (699)
292 3s94_A LRP-6, low-density lipo 96.7 0.78 2.7E-05 55.1 30.9 316 297-625 51-419 (619)
293 4hw6_A Hypothetical protein, I 96.7 0.1 3.6E-06 59.9 22.0 145 438-585 140-303 (433)
294 3s94_A LRP-6, low-density lipo 96.6 0.22 7.6E-06 59.9 25.0 208 336-593 40-250 (619)
295 1k3i_A Galactose oxidase precu 96.6 0.12 4.1E-06 62.8 22.8 62 511-575 458-530 (656)
296 2p9w_A MAL S 1 allergenic prot 96.6 0.91 3.1E-05 49.6 26.8 219 333-586 10-265 (334)
297 3sre_A PON1, serum paraoxonase 96.5 0.44 1.5E-05 52.9 24.5 203 381-620 51-288 (355)
298 3tc9_A Hypothetical hydrolase; 96.5 0.096 3.3E-06 60.1 19.8 152 438-625 138-297 (430)
299 3m0c_C LDL receptor, low-densi 96.2 1 3.5E-05 55.7 27.9 217 357-625 403-628 (791)
300 4a0p_A LRP6, LRP-6, low-densit 96.2 2.8 9.7E-05 50.3 31.3 206 336-593 340-556 (628)
301 2g8s_A Glucose/sorbosone dehyd 96.1 1.5 5.1E-05 48.6 26.4 68 557-625 272-350 (353)
302 3kya_A Putative phosphatase; s 95.9 0.77 2.6E-05 53.3 23.2 161 397-584 143-339 (496)
303 3amr_A 3-phytase; beta-propell 95.9 1.1 3.6E-05 49.5 23.0 177 447-629 39-262 (355)
304 2ism_A Putative oxidoreductase 95.8 0.51 1.8E-05 52.4 20.9 61 511-574 270-333 (352)
305 2xbg_A YCF48-like protein; pho 95.8 0.58 2E-05 51.3 21.1 194 336-583 122-319 (327)
306 3a9g_A Putative uncharacterize 95.7 3 0.0001 46.1 26.7 222 380-620 29-334 (354)
307 3sre_A PON1, serum paraoxonase 95.7 1.6 5.5E-05 48.4 24.1 73 510-585 222-297 (355)
308 3ei3_A DNA damage-binding prot 95.4 6 0.0002 51.0 31.2 185 404-625 843-1058(1158)
309 3das_A Putative oxidoreductase 95.3 4.4 0.00015 44.7 27.8 234 327-574 23-326 (347)
310 3ei3_A DNA damage-binding prot 95.2 11 0.00038 48.5 35.3 76 335-423 553-635 (1158)
311 3pbp_A Nucleoporin NUP82; beta 94.8 1.7 5.9E-05 48.9 20.3 116 510-628 67-211 (452)
312 2g8s_A Glucose/sorbosone dehyd 94.7 3.7 0.00013 45.4 23.3 68 510-579 272-347 (353)
313 1cru_A Protein (soluble quinop 94.6 8.3 0.00028 44.2 30.5 110 336-456 27-163 (454)
314 1n7d_A LDL receptor, low-densi 94.2 0.09 3.1E-06 64.4 9.2 216 358-625 386-610 (699)
315 2be1_A Serine/threonine-protei 93.9 2.5 8.4E-05 46.5 19.2 117 348-477 10-140 (339)
316 3pbp_A Nucleoporin NUP82; beta 93.0 5.1 0.00017 45.1 19.8 153 415-582 41-208 (452)
317 1bpo_A Protein (clathrin); cla 93.0 15 0.0005 41.6 31.5 233 343-624 73-326 (494)
318 1cru_A Protein (soluble quinop 92.9 5.1 0.00018 45.9 20.7 33 437-469 27-59 (454)
319 2xzh_A Clathrin heavy chain 1; 92.7 6.3 0.00022 42.8 19.2 145 415-600 49-202 (365)
320 3ott_A Two-component system se 92.6 13 0.00044 45.5 25.2 228 335-625 21-256 (758)
321 2vpj_A Kelch-like protein 12; 92.3 10 0.00035 40.1 21.2 65 519-588 159-233 (301)
322 1tl2_A L10, protein (tachylect 92.3 3.9 0.00013 41.9 16.1 155 437-623 41-204 (236)
323 2xzh_A Clathrin heavy chain 1; 92.3 15 0.00051 39.9 33.0 233 344-625 75-328 (365)
324 3ii7_A Kelch-like protein 7; p 91.7 15 0.00052 38.9 22.3 94 519-620 149-258 (306)
325 3das_A Putative oxidoreductase 91.6 9 0.00031 42.1 19.7 40 431-470 26-65 (347)
326 2xn4_A Kelch-like protein 2; s 91.6 16 0.00053 38.7 21.6 65 519-588 155-231 (302)
327 2vpj_A Kelch-like protein 12; 90.9 15 0.00051 38.8 20.5 65 519-588 206-280 (301)
328 4asc_A Kelch repeat and BTB do 90.8 19 0.00065 38.3 22.0 66 518-588 147-223 (315)
329 1tl2_A L10, protein (tachylect 89.7 9 0.00031 39.2 15.9 113 439-580 90-204 (236)
330 1bpo_A Protein (clathrin); cla 89.4 13 0.00045 42.0 18.1 148 415-603 48-204 (494)
331 3ii7_A Kelch-like protein 7; p 89.3 16 0.00055 38.7 19.1 65 519-588 200-274 (306)
332 2xn4_A Kelch-like protein 2; s 88.9 20 0.00069 37.8 19.5 65 519-588 204-278 (302)
333 1zgk_A Kelch-like ECH-associat 88.5 18 0.00061 38.5 18.8 65 519-588 168-242 (308)
334 3s25_A Hypothetical 7-bladed b 87.9 32 0.0011 36.8 21.1 127 413-587 125-256 (302)
335 2woz_A Kelch repeat and BTB do 86.0 39 0.0013 35.9 21.9 66 518-588 157-233 (318)
336 3s25_A Hypothetical 7-bladed b 85.8 35 0.0012 36.5 19.0 81 516-610 152-235 (302)
337 1xi4_A Clathrin heavy chain; a 85.5 22 0.00074 46.2 19.0 235 344-624 74-326 (1630)
338 2uvk_A YJHT; unknown function, 82.6 42 0.0014 36.2 18.4 40 578-620 286-327 (357)
339 1zgk_A Kelch-like ECH-associat 78.9 47 0.0016 35.0 16.8 65 519-588 215-289 (308)
340 2zwa_A Leucine carboxyl methyl 78.5 58 0.002 39.3 19.2 155 406-588 453-637 (695)
341 4asc_A Kelch repeat and BTB do 78.1 57 0.002 34.5 17.2 95 519-621 98-208 (315)
342 2be1_A Serine/threonine-protei 77.8 4.4 0.00015 44.4 8.0 116 449-595 11-139 (339)
343 2uvk_A YJHT; unknown function, 74.4 98 0.0033 33.2 18.9 58 531-593 286-349 (357)
344 3b7f_A Glycosyl hydrolase, BNR 73.9 1.1E+02 0.0037 33.5 22.9 23 336-358 55-77 (394)
345 2zwa_A Leucine carboxyl methyl 69.5 74 0.0025 38.4 16.9 72 514-588 495-579 (695)
346 1sqj_A OXG-RCBH, oligoxylogluc 69.3 2.1E+02 0.0072 34.9 26.2 55 335-391 14-75 (789)
347 2woz_A Kelch repeat and BTB do 68.2 1E+02 0.0034 32.5 16.1 94 519-620 109-217 (318)
348 2wg3_C Hedgehog-interacting pr 67.8 1.7E+02 0.0058 33.2 27.8 29 337-365 15-43 (463)
349 3sbq_A Nitrous-oxide reductase 67.3 1.9E+02 0.0066 33.7 25.3 78 510-587 324-409 (638)
350 1xi4_A Clathrin heavy chain; a 66.2 1.1E+02 0.0036 40.1 17.2 175 337-542 107-292 (1630)
351 4hvt_A Ritya.17583.B, post-pro 65.4 2.3E+02 0.008 34.0 23.7 92 528-620 318-418 (711)
352 4gq2_M Nucleoporin NUP120; bet 63.9 85 0.0029 39.4 16.3 39 438-476 237-275 (950)
353 2wg3_C Hedgehog-interacting pr 62.2 78 0.0027 36.1 14.2 107 511-620 16-160 (463)
354 3sbq_A Nitrous-oxide reductase 61.0 28 0.00096 40.5 9.8 75 380-467 323-408 (638)
355 3a98_B Engulfment and cell mot 60.0 3.7 0.00013 41.4 2.2 34 810-843 8-41 (203)
356 4gq2_M Nucleoporin NUP120; bet 60.0 90 0.0031 39.1 15.5 38 556-593 236-273 (950)
357 3uc1_A DNA gyrase subunit A; D 42.7 3.4E+02 0.012 29.0 20.0 193 405-620 109-321 (327)
358 4fhn_B Nucleoporin NUP120; pro 40.4 64 0.0022 41.4 9.7 39 438-476 239-277 (1139)
359 3zwu_A Alkaline phosphatase PH 40.3 3E+02 0.01 32.2 14.6 58 558-615 478-548 (592)
360 2cn3_A Xyloglucanase, beta-1,4 39.8 5.6E+02 0.019 30.7 24.9 53 337-391 24-83 (737)
361 4fhn_B Nucleoporin NUP120; pro 37.7 75 0.0026 40.8 9.7 36 558-593 240-275 (1139)
362 3uc1_A DNA gyrase subunit A; D 31.4 5.1E+02 0.017 27.6 16.7 104 519-625 108-224 (327)
363 3ott_A Two-component system se 28.4 8.1E+02 0.028 29.1 37.5 260 336-626 146-445 (758)
364 3f7f_A Nucleoporin NUP120; nuc 26.6 78 0.0027 38.0 6.4 37 438-476 223-259 (729)
365 3q6k_A 43.2 kDa salivary prote 25.8 6.8E+02 0.023 27.3 26.4 61 513-573 279-341 (381)
366 3b7f_A Glycosyl hydrolase, BNR 25.5 6.5E+02 0.022 27.0 23.1 67 557-625 178-258 (394)
367 4g5s_E PINS homolog, G-protein 24.0 46 0.0016 20.7 2.0 21 926-946 3-23 (26)
368 1sqj_A OXG-RCBH, oligoxylogluc 23.7 1E+03 0.035 28.6 20.1 61 380-455 15-83 (789)
369 3zwu_A Alkaline phosphatase PH 21.6 2E+02 0.0069 33.7 8.7 59 511-573 478-548 (592)
370 3qhy_B Beta-lactamase inhibito 21.1 6.9E+02 0.024 25.7 20.2 218 337-625 25-242 (282)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-38 Score=390.20 Aligned_cols=402 Identities=15% Similarity=0.162 Sum_probs=306.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~ 371 (1019)
.++++|+.++++. +..+.+|+... .+...++.+|.+.|++++|+|+ +.+|+||+.||+|+|||+.. ...+
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~-------~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGS-------LTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTC-------SSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCC-------cccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCccee
Confidence 4688999999986 56999998753 3457789999999999999996 89999999999999999853 3345
Q ss_pred EEEecccCccEeEEEEcCCCCcee-------------------------------EEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFI-------------------------------SAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~v-------------------------------s~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
...+.+|.+.|.+++|+|+|..++ .+++|+|+.+..|++|+.|++|++|
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lw 175 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEE
Confidence 667889999999999999987553 4567888887789999999999999
Q ss_pred EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--------cCCceEEEEEecCCCee
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--------SRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--------~~~~v~~v~~~p~~~~~ 492 (1019)
|. ...++...+.+|...|.+++|+|+|++|++++.|++|++||+.+++++..+. +...+.+++|+|++..+
T Consensus 176 d~-~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 254 (611)
T 1nr0_A 176 EG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254 (611)
T ss_dssp ET-TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred EC-CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence 98 5678888999999999999999999999999999999999999999988883 45689999999998755
Q ss_pred ee----------ccCCC--------------------------------------------ceeeeCCCCCcccEEEEcC
Q psy307 493 HL----------DIPVD--------------------------------------------MKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 493 ~~----------~~~~~--------------------------------------------~~~i~~~~~~~i~~v~~sp 518 (1019)
+. +.... .......|...|.+++|+|
T Consensus 255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp 334 (611)
T 1nr0_A 255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334 (611)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence 43 11110 0012235667899999999
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccce----------------------------e-----------------EEecc-
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRK----------------------------K-----------------TFEGH- 552 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~----------------------------~-----------------~l~gh- 552 (1019)
+|++|++++.|++|++||+.++...... + .+.++
T Consensus 335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 414 (611)
T 1nr0_A 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence 9999999999999999998754221100 0 00000
Q ss_pred -------------------------------ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeeeeccCCC
Q psy307 553 -------------------------------MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKWKAHDGV 599 (1019)
Q Consensus 553 -------------------------------~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l~~h~~~ 599 (1019)
.....+.+++|+|||++|++|+.||+|+|||+.++.. +.. .+|...
T Consensus 415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~ 493 (611)
T 1nr0_A 415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAE 493 (611)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSC
T ss_pred cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCc
Confidence 0013467899999999999999999999999987654 334 689999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee--ccccCCceeecccccccchhhhhhhcccccCCCceeEEEee
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE--MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFS 677 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e--~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~s 677 (1019)
|.+++|+|++ .+|++++.|++|++|.-....+.... ...+.. .+....+++...+++..+
T Consensus 494 v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~-----------------~V~~v~fspdg~~lasgs 555 (611)
T 1nr0_A 494 ITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-----------------KVACVSWSPDNVRLATGS 555 (611)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-----------------CEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc-----------------ceeEEEECCCCCEEEEEE
Confidence 9999999998 69999999999977643321222111 000111 111223333344555555
Q ss_pred cCCCceEEeccccc--c-----cc-CCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 678 ETNNKNYITEKNRN--E-----IK-NGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 678 d~~~~~~it~~~~~--~-----I~-ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.++...+|...... . .| .+.|.+++|+|++ + |++++.|++|+||+.
T Consensus 556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~--~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--T-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT--E-EEEEETTSCEEEEEC
T ss_pred CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC--E-EEEecCCCCEEEEec
Confidence 55556666654322 1 25 6889999999998 5 999999999999975
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-36 Score=365.15 Aligned_cols=406 Identities=22% Similarity=0.353 Sum_probs=309.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++++|+++++++.|+.|++|+.. .++++++.+|.+.|++++|+|+ +.+|++|+.|++|+|||+ .++++
T Consensus 23 a~spdg~~las~~~d~~v~iWd~~--------~~~~~~l~gh~~~V~~l~fspd-g~~las~~~d~~i~vWd~--~~~~~ 91 (577)
T 2ymu_A 23 AFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR--NGQLL 91 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT--------SCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEET--TSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECC--------CCEEEEEeCCCCCEEEEEECCC-CCEEEEEeCCCEEEEEEC--CCCEE
Confidence 467899999999999999999743 3578899999999999999996 889999999999999997 35678
Q ss_pred EEecccCccEeEEEEcCCCCceeEE-------------------------------------------------------
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISA------------------------------------------------------- 397 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~------------------------------------------------------- 397 (1019)
..+.+|...|.+++|+|++..++++
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccccee
Confidence 8999999999999999999877543
Q ss_pred --------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE
Q psy307 398 --------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463 (1019)
Q Consensus 398 --------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW 463 (1019)
+.|+| ++.+|++++.||.|++||. .++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 172 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeccCCCcceeeeeecC-CCCEEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 11222 2457899999999999996 567888899999999999999999999999999999999
Q ss_pred ECCCCceEEEEec-CCceEEEEEecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 464 DTESGECISRFTS-RKVAYCVKFHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 464 Dl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|. +++.+..+.. ...+.+++|+|++..++... ..........+...+.+++++|++++|++++.|+.|
T Consensus 249 ~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 249 NR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp CT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 96 4566666664 46789999999987655422 222233345567789999999999999999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++||.... ....+.+|. ..+.+++|+|+|++|++|+.||.|++||. +++.+..+.+|...|.+++|+|++ .+
T Consensus 328 ~~w~~~~~----~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~ 399 (577)
T 2ymu_A 328 KLWNRNGQ----HLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QT 399 (577)
T ss_dssp EEEETTSC----EEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SC
T ss_pred EEEeCCCC----eeEEEeCCC--CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CE
Confidence 99998653 345667776 67999999999999999999999999994 678899999999999999999998 68
Q ss_pred EEEEeCCCcEEEEeccceeeeeeeccccCCcee--ec--ccccccchhhhhhhcccc--------------------cCC
Q psy307 613 VVTAGWDAATAKVQDANIVKIAVEMEKQVPQLY--QF--NQTLTLSSIIQEICSGWS--------------------LSD 668 (1019)
Q Consensus 613 l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~--~l--~~~~~LSs~~~~~~~~ws--------------------ls~ 668 (1019)
|++++.|+.|++| +.+- +......++...+. .+ +.....+...+..+..|+ +++
T Consensus 400 l~~~~~d~~v~~~-~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 400 IASASDDKTVKLW-NRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp EEEEETTSEEEEE-CTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEE-eCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcC
Confidence 9999999999765 4432 22222222222211 11 111111111222223333 222
Q ss_pred CceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 669 SEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 669 ~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
...+++..+.+....+|.. ++..+ |.+.|++++|+|++ +.|++++.|++|+||+.
T Consensus 478 d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR 537 (577)
T ss_dssp TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT
T ss_pred CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC--CEEEEEECcCEEEEEeC
Confidence 2223333333333444442 22222 68899999999998 78999999999999984
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.7e-37 Score=355.24 Aligned_cols=288 Identities=23% Similarity=0.447 Sum_probs=251.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...+.||.++|++++|+|+ +.+|++|+.||+|+|||+ ..+.+..++.+|...|.+++|+|++ .+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~--------------~~ 164 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSG--------------KL 164 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTS--------------SE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCC--------------CE
Confidence 4578999999999999996 789999999999999999 5567788999999999999999998 69
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
|++|+.||+|++||+ ....++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++.++..+.
T Consensus 165 l~sgs~D~~i~iwd~-~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--------- 234 (410)
T 1vyh_C 165 LASCSADMTIKLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--------- 234 (410)
T ss_dssp EEEEETTSCCCEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS---------
T ss_pred EEEEeCCCeEEEEeC-CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC---------
Confidence 999999999999999 6677889999999999999999999999999999999999999999887775432
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD- 566 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd- 566 (1019)
..+.++.++|+|.+|++|+.||.|++||+.++ .....+.+|. ..|.+++|+|+
T Consensus 235 ---------------------~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~--~~v~~~~~~~~~ 288 (410)
T 1vyh_C 235 ---------------------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHR--HVVECISWAPES 288 (410)
T ss_dssp ---------------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCEEEEEECCSC
T ss_pred ---------------------ccEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCC--ceEEEEEEcCcc
Confidence 44667788889999999999999999999876 4456777887 77999999996
Q ss_pred -------------------CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 567 -------------------MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 567 -------------------g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|.+|++|+.||+|++||+.+++++..+.+|.+.|.+++|+|++ .+|++|+.||+|++| +
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vw-d 366 (410)
T 1vyh_C 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVW-D 366 (410)
T ss_dssp GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEE-C
T ss_pred cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEE-E
Confidence 6799999999999999999999999999999999999999988 689999999999776 2
Q ss_pred cceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCc
Q psy307 628 ANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASK 707 (1019)
Q Consensus 628 ~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~ 707 (1019)
.... . ....+ ..|.+.|.+++|+|++
T Consensus 367 ~~~~--------------------------------------~-~~~~~---------------~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 367 YKNK--------------------------------------R-CMKTL---------------NAHEHFVTSLDFHKTA 392 (410)
T ss_dssp CTTS--------------------------------------C-CCEEE---------------ECCSSCEEEEEECSSS
T ss_pred CCCC--------------------------------------c-eEEEE---------------cCCCCcEEEEEEcCCC
Confidence 2110 0 00011 0367789999999998
Q ss_pred cHHHHHhhcCCCchhhHH
Q psy307 708 TADDILSKLSDKNASLEE 725 (1019)
Q Consensus 708 ~a~~Ilt~~~d~~i~lw~ 725 (1019)
+.|++++.|++|++|+
T Consensus 393 --~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 393 --PYVVTGSVDQTVKVWE 408 (410)
T ss_dssp --SCEEEEETTSEEEEEC
T ss_pred --CEEEEEeCCCcEEEEe
Confidence 7899999999999996
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-36 Score=353.26 Aligned_cols=291 Identities=24% Similarity=0.413 Sum_probs=252.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ ....++.
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~-------~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~-~~~~~~~ 186 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYET-------GDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDF-QGFECIR 186 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTT-------CCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEET-TSSCEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeC-CCCceeE
Confidence 677899999999999999998763 3457899999999999999995 789999999999999999 5667889
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
++.+|...|.+++|+|++ .+|++|+.|++|++||+ ..+.++..+.+|...|.++.|+|++.+|++
T Consensus 187 ~~~~h~~~V~~v~~~p~~--------------~~l~s~s~D~~i~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNG--------------DHIVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp CCCCCSSCEEEEEECSSS--------------SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEcCCCCCEEEEEEeCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 999999999999999998 68999999999999999 567788899999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
|+.|++|++||+.++++...+..+ ..+.+++|+|+.......... ..........|.+|++|+.|+.|
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-----------GSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-----------SCC-------CCEEEEEETTSEE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-----------cccccccCCCCCEEEEEeCCCeE
Confidence 999999999999999999888654 678899999986533221110 01112233468899999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
++||+.++ .....+.+|. ..|.+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...|++++|+|++ .+
T Consensus 321 ~iwd~~~~---~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~ 394 (410)
T 1vyh_C 321 KMWDVSTG---MCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PY 394 (410)
T ss_dssp EEEETTTT---EEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SC
T ss_pred EEEECCCC---ceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CE
Confidence 99999887 4557788887 779999999999999999999999999999999999999999999999999998 58
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
|++||.||+|++|
T Consensus 395 l~sgs~D~~i~vW 407 (410)
T 1vyh_C 395 VVTGSVDQTVKVW 407 (410)
T ss_dssp EEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEE
Confidence 9999999999777
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-35 Score=359.31 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=298.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++|+.+++++.|+.|++|+.. .+.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||. ..+++
T Consensus 187 ~~~~~~~~l~~~~~d~~v~~w~~~--------~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~--~~~~~ 255 (577)
T 2ymu_A 187 AFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR--NGQLL 255 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTT--------SCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT--TSCEE
T ss_pred eecCCCCEEEEEcCCCEEEEEeCC--------CcEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeC--CCCEE
Confidence 356789999999999999999743 3567889999999999999996 789999999999999996 34678
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++ ..|++++.|+.|++||. .++....+.+|...|.+++|+|+++.|+
T Consensus 256 ~~~~~~~~~v~~v~~~~d~--------------~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDG--------------QTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEecCCCCEEEEEEcCCC--------------CEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCCCCEEE
Confidence 8899999999999999998 68999999999999996 4567888999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC----------CceeeeCCCCCcccEEEEcCCCCE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV----------DMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~----------~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
+++.|++|++||...............+.+++|+|++..++..... ........+...|.+++|+|+|++
T Consensus 320 t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCE
Confidence 9999999999998765543333345778999999998866553222 222233456778999999999999
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
|++++.|+.|++||... .....+.+|. ..|.+++|+||+++|++++.||.|++||. +++.+..+.+|...|.+
T Consensus 400 l~~~~~d~~v~~~~~~~----~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~ 472 (577)
T 2ymu_A 400 IASASDDKTVKLWNRNG----QLLQTLTGHS--SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRG 472 (577)
T ss_dssp EEEEETTSEEEEECTTC----CEEEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEE
T ss_pred EEEEeCCCEEEEEeCCC----CEEEEecCCC--CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEE
Confidence 99999999999999643 3456778887 67999999999999999999999999995 67888999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCc
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNK 682 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~ 682 (1019)
++|+|++ .+|++++.|++|++|. .+ .+......++...+.. ..+++...+++..+.+...
T Consensus 473 ~~~spd~-~~las~~~d~~i~iw~-~~-~~~~~~~~~h~~~v~~-----------------l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 473 VAFSPDG-QTIASASDDKTVKLWN-RN-GQLLQTLTGHSSSVRG-----------------VAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp EEECTTS-CEEEEEETTSEEEEEE-TT-SCEEEEEECCSSCEEE-----------------EEECTTSSCEEEEETTSEE
T ss_pred EEEcCCC-CEEEEEeCCCEEEEEc-CC-CCEEEEEeCCCCCEEE-----------------EEEcCCCCEEEEEECcCEE
Confidence 9999998 6999999999997764 32 2233233332222211 1122222233333333344
Q ss_pred eEEecccccc-----ccCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 683 NYITEKNRNE-----IKNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 683 ~~it~~~~~~-----I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
.+|.. .+.. -|.+.|++++|+||+ +.|++++.|++|++|+
T Consensus 533 ~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg--~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 533 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred EEEeC-CCCEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCEEEEeC
Confidence 44442 2222 278999999999998 7899999999999995
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=336.03 Aligned_cols=272 Identities=17% Similarity=0.290 Sum_probs=240.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+++.+++++.|+.|++|+..... .....++.||...|.+++|+|+ +.++++|+.|++|++||+ ..++++..+
T Consensus 46 ~~~~~l~tgs~D~~v~vW~~~~~~-----~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~~~~~~ 118 (321)
T 3ow8_A 46 ENSETVVTGSLDDLVKVWKWRDER-----LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGKQIKSI 118 (321)
T ss_dssp ---CEEEEEETTSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEECCCCC-----eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCEEEEE
Confidence 467899999999999999875322 1345678999999999999996 789999999999999999 556788889
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
..|...+.+++|+|++ .+|++|+.||.|++||+ ..+.....+..|...|.+++|+|++++|++|+
T Consensus 119 ~~~~~~~~~~~~spdg--------------~~l~~g~~dg~v~i~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 119 DAGPVDAWTLAFSPDS--------------QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp ECCTTCCCCEEECTTS--------------SEEEEECTTSEEEEEET-TTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCccEEEEEECCCC--------------CEEEEEcCCCcEEEEEc-CCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 9999999999999999 69999999999999999 55566777888999999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.||.|++||+++++++..+.. +...|.+++|+|++++|++++.||.|++|
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~spd~~~l~s~s~dg~i~iw 233 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEG------------------------------HAMPIRSLTFSPDSQLLVTASDDGYIKIY 233 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECC------------------------------CSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcc------------------------------cCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence 999999999999988776653 23567788899999999999999999999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
|+... .....+.+|. ..|.+++|+|+|++|++|+.||+|+|||+.+++++.++.+|.+.|.+++|+|++ .+|++
T Consensus 234 d~~~~---~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s 307 (321)
T 3ow8_A 234 DVQHA---NLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVS 307 (321)
T ss_dssp ETTTC---CEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred ECCCc---ceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEE
Confidence 99876 3457788887 779999999999999999999999999999999999999999999999999998 68999
Q ss_pred EeCCCcEEEE
Q psy307 616 AGWDAATAKV 625 (1019)
Q Consensus 616 ~s~Dg~I~iw 625 (1019)
++.||+|++|
T Consensus 308 ~~~d~~i~vw 317 (321)
T 3ow8_A 308 VGDDQEIHIY 317 (321)
T ss_dssp EETTCCEEEE
T ss_pred EeCCCeEEEE
Confidence 9999999776
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=337.83 Aligned_cols=294 Identities=20% Similarity=0.318 Sum_probs=248.7
Q ss_pred cceeeeccCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.....+.+|.+.|++++|+|+ ++.+|+||+.|++|+||++.... .+...+.+|...|.+++|++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~---------- 92 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---------- 92 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS----------
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC----------
Confidence 445677899999999999985 36799999999999999985443 3455789999999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.++++|+.|++|++||+ ..++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+
T Consensus 93 ----~~l~s~s~D~~i~lWd~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~---- 163 (321)
T 3ow8_A 93 ----PIAASSSLDAHIRLWDL-ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR---- 163 (321)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----
T ss_pred ----CEEEEEeCCCcEEEEEC-CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----
Confidence 68999999999999999 667788889999999999999999999999999999999999998876655432
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
...+.+++|+|+|++|++|+.||.|++||+.++ ..+..+.+|. ..|.++
T Consensus 164 --------------------------~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l 212 (321)
T 3ow8_A 164 --------------------------GKFILSIAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHA--MPIRSL 212 (321)
T ss_dssp --------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCCCEE
T ss_pred --------------------------CceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcccC--CceeEE
Confidence 234667888999999999999999999999887 4457788887 679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccC
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQV 641 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v 641 (1019)
+|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.||+|++| +....+
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iw-d~~~~~--------- 281 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVW-DVGTRT--------- 281 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEE-ETTTTE---------
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEE-eCCCCE---------
Confidence 999999999999999999999999999999999999999999999998 699999999999776 221100
Q ss_pred CceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCch
Q psy307 642 PQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNA 721 (1019)
Q Consensus 642 ~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i 721 (1019)
....+. -|.+.|.+++|+|++ +.|++++.|++|
T Consensus 282 ------------------------------~~~~~~---------------~h~~~v~~v~~s~~g--~~l~s~~~d~~i 314 (321)
T 3ow8_A 282 ------------------------------CVHTFF---------------DHQDQVWGVKYNGNG--SKIVSVGDDQEI 314 (321)
T ss_dssp ------------------------------EEEEEC---------------CCSSCEEEEEECTTS--SEEEEEETTCCE
T ss_pred ------------------------------EEEEEc---------------CCCCcEEEEEECCCC--CEEEEEeCCCeE
Confidence 111111 256789999999998 679999999999
Q ss_pred hhHHHH
Q psy307 722 SLEEKT 727 (1019)
Q Consensus 722 ~lw~~~ 727 (1019)
++|+.+
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999753
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-35 Score=334.37 Aligned_cols=274 Identities=20% Similarity=0.276 Sum_probs=241.0
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---E
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---R 370 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~ 370 (1019)
++++|+.+++++.|+.|++|+... .+.+..+.+|...|.+++|+|+ +.+|++|+.|+.|++|++.... .
T Consensus 63 ~s~d~~~l~s~s~Dg~v~iWd~~~-------~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 63 WGTDSRLLLSASQDGKLIIWDSYT-------TNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTT-------CCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCC-------CCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcce
Confidence 578899999999999999998653 3567889999999999999995 8899999999999999995432 5
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
....+.+|...|.++.|++++ .+++++.|++|++||+ ..+.++..+.+|.+.|.+++|+|++++
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~---------------~l~s~s~d~~i~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDN---------------QIVTSSGDTTCALWDI-ETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETT---------------EEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEecCCCccEEEEEECCCC---------------cEEEEECCCcEEEEEC-CCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 667788999999999998876 5899999999999999 667888999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|++|+.|++|++||++++.++..+.. +...|.+++|+|++++|++|+.||
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~~~------------------------------h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTFTG------------------------------HESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCCcEEEEECCCCeeEEEEcC------------------------------CcCCEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999999999988776653 234577788899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
+|++||++.... ...+..+.....|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 249 ~v~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg- 324 (340)
T 1got_B 249 TCRLFDLRADQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG- 324 (340)
T ss_dssp CEEEEETTTTEE---EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred cEEEEECCCCcE---EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-
Confidence 999999987632 3344333333569999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEE
Q psy307 611 SKVVTAGWDAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iw 625 (1019)
.+|+|||.||+|++|
T Consensus 325 ~~l~s~s~D~~i~iW 339 (340)
T 1got_B 325 MAVATGSWDSFLKIW 339 (340)
T ss_dssp SCEEEEETTSCEEEE
T ss_pred CEEEEEcCCccEEec
Confidence 689999999999887
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-35 Score=330.52 Aligned_cols=303 Identities=19% Similarity=0.322 Sum_probs=240.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+..++.||.+.|++++|+|+++.+|+||+.|++|++|++... +.++..+.+|...|.+++|+|++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---------- 77 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---------- 77 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS----------
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC----------
Confidence 4567899999999999999977799999999999999998432 34678899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCce
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVA 480 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v 480 (1019)
.+|++|+.|++|++||+ ..++++..+.+|...|.+++|+|++.+|++|+.|++|++||++. .++..+.. ...+
T Consensus 78 ----~~l~s~s~D~~v~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v 151 (319)
T 3frx_A 78 ----AYALSASWDKTLRLWDV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWV 151 (319)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCE
T ss_pred ----CEEEEEeCCCEEEEEEC-CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcE
Confidence 69999999999999999 67788899999999999999999999999999999999999974 45555443 3455
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.++.+.|... ..+++..|++++.|+.|++||+.+. .....+.+|. ..|.+
T Consensus 152 ~~~~~~~~~~-------------------------~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~--~~v~~ 201 (319)
T 3frx_A 152 SQVRVVPNEK-------------------------ADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHN--SNINT 201 (319)
T ss_dssp EEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTT---EEEEEECCCC--SCEEE
T ss_pred EEEEEccCCC-------------------------CCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCC--CcEEE
Confidence 6666655421 1235668999999999999999875 3456777887 77999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecccc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQ 640 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~ 640 (1019)
++|+|+|++|++|+.||+|+|||+.+++.+..+..+ ..|.+++|+|++ .++++++.+ .+++| +.+.........
T Consensus 202 ~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~-~~la~~~~~-~i~v~-~~~~~~~~~~~~-- 275 (319)
T 3frx_A 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR-YWLAAATAT-GIKVF-SLDPQYLVDDLR-- 275 (319)
T ss_dssp EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS-SEEEEEETT-EEEEE-EETTEEEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC-CEEEEEcCC-CcEEE-EeCcCeeeeccC--
Confidence 999999999999999999999999999999998865 579999999998 577776655 46555 322211110000
Q ss_pred CCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCc
Q psy307 641 VPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKN 720 (1019)
Q Consensus 641 v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~ 720 (1019)
.. . ......+...|.+++|||++ +.|++++.|++
T Consensus 276 -------------------------------------~~-~------~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~ 309 (319)
T 3frx_A 276 -------------------------------------PE-F------AGYSKAAEPHAVSLAWSADG--QTLFAGYTDNV 309 (319)
T ss_dssp -------------------------------------CC-C------TTCCGGGCCCEEEEEECTTS--SEEEEEETTSC
T ss_pred -------------------------------------cc-c------cccccCcCcceeEEEECCCC--CEEEEeecCce
Confidence 00 0 00011346678899999999 88999999999
Q ss_pred hhhHHH
Q psy307 721 ASLEEK 726 (1019)
Q Consensus 721 i~lw~~ 726 (1019)
|++|+.
T Consensus 310 i~vWd~ 315 (319)
T 3frx_A 310 IRVWQV 315 (319)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999974
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.5e-35 Score=331.63 Aligned_cols=292 Identities=17% Similarity=0.239 Sum_probs=247.3
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
+.+...+++||.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~------------ 109 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSG------------ 109 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred cchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCC------------
Confidence 34567899999999999999996 889999999999999999 4556778889999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.+|++|+.|+.|++|++.... .....+.+|.+.|.++.|++++. +++++.|++|++||+++++++..+..+
T Consensus 110 --~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h--- 183 (340)
T 1got_B 110 --NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH--- 183 (340)
T ss_dssp --SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC---
T ss_pred --CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC---
Confidence 699999999999999996543 56778899999999999998874 899999999999999999887766532
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
...|.+++|+|++++|++|+.||.|++||++++ .....+.+|. ..|.+
T Consensus 184 ---------------------------~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~--~~v~~ 231 (340)
T 1got_B 184 ---------------------------TGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHE--SDINA 231 (340)
T ss_dssp ---------------------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCS--SCEEE
T ss_pred ---------------------------CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---eeEEEEcCCc--CCEEE
Confidence 345677888889999999999999999999876 4457788887 67999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
++|+|+|++|++|+.||+|++||+++++.+..+.. +...|.+++|+|++ .++++|+.||.|++|. ....
T Consensus 232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd-~~~~------- 302 (340)
T 1got_B 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWD-ALKA------- 302 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEE-TTTC-------
T ss_pred EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEE-cccC-------
Confidence 99999999999999999999999999988777653 33579999999998 6999999999997762 2110
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
. ....+. -|.++|.+++|+|++ +.|++++.|
T Consensus 303 -------------------------------~-~~~~~~---------------~h~~~v~~~~~s~dg--~~l~s~s~D 333 (340)
T 1got_B 303 -------------------------------D-RAGVLA---------------GHDNRVSCLGVTDDG--MAVATGSWD 333 (340)
T ss_dssp -------------------------------C-EEEEEE---------------CCSSCEEEEEECTTS--SCEEEEETT
T ss_pred -------------------------------c-EeeEee---------------cCCCcEEEEEEcCCC--CEEEEEcCC
Confidence 0 001111 367889999999998 789999999
Q ss_pred CchhhHH
Q psy307 719 KNASLEE 725 (1019)
Q Consensus 719 ~~i~lw~ 725 (1019)
++|+||+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999995
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=336.52 Aligned_cols=281 Identities=19% Similarity=0.288 Sum_probs=226.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCC---CCccC-CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPP---DRCFL-PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~---~~~~l-p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.+++++ |.++++|+.... ..... ..........|..+|++++|+|+ ..|++|+.||+|+|||+..+
T Consensus 37 ~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~ 113 (344)
T 4gqb_B 37 RYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSGAVELWELDEN 113 (344)
T ss_dssp EECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTSEEEEEEECTT
T ss_pred EECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCC
Confidence 4788999888776 778888863210 00111 11223334457789999999996 46889999999999999654
Q ss_pred cE---EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe
Q psy307 369 RR---CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 369 ~~---~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs 445 (1019)
.. ......+|...|++++|+|+| ++|++|+.||+|++||+ ..++++..+.+|.+.|.+++|+
T Consensus 114 ~~~~~~~~~~~~H~~~V~~v~~spdg--------------~~l~sgs~d~~i~iwd~-~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 114 ETLIVSKFCKYEHDDIVSTVSVLSSG--------------TQAVSGSKDICIKVWDL-AQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp SSCEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEC
T ss_pred CceeEeeccccCCCCCEEEEEECCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEcCcCCceEEEEec
Confidence 32 223456899999999999999 69999999999999999 6788999999999999999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEE
Q psy307 446 NTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWL 523 (1019)
Q Consensus 446 pdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~L 523 (1019)
+++. .|++++.|++|++||++++++...+.... +...+.+++|+|+ +++|
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA----------------------------PGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------CCCEEEEEECSSCTTEE
T ss_pred CCCCCceeeeccccccccccccccceeeeeecce----------------------------eeccceeeeecCCCCcce
Confidence 9985 68999999999999999998877654321 1234556777774 5788
Q ss_pred EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEE
Q psy307 524 ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIS 602 (1019)
Q Consensus 524 asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~s 602 (1019)
++|+.||.|++||++++ ..+..+.+|. ..|.+++|+|+| ++|++|+.||+|+|||+.+++++ .+.+|.+.|++
T Consensus 231 ~sg~~dg~v~~wd~~~~---~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKST---SCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp EEEETTSEEEEEESCC-----CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred EEeccCCcEEEEECCCC---cEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 99999999999999887 4557888987 779999999998 58999999999999999998765 56899999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++|+|++..+|+|||.||+|++|
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEeCCCCeEEEEEcCCCeEEEE
Confidence 99999997788999999999766
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.8e-35 Score=325.31 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=238.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... ...+..+.+|..+|.+++|+|+ +.+|++|+.|++|++||+ ..++++
T Consensus 20 ~fsp~~~~l~s~~~dg~v~lWd~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i~vwd~-~~~~~~ 90 (304)
T 2ynn_A 20 DFHPTEPWVLTTLYSGRVELWNYET-------QVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY-NTGEKV 90 (304)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCC-------CceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEEEEEEC-CCCcEE
Confidence 4678999999999999999998763 3567899999999999999995 889999999999999999 556778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNF 451 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l 451 (1019)
..+.+|...|.+++|+|++ .+|++|+.||+|++||+.....+...+.+|...|.+++|+| ++..|
T Consensus 91 ~~~~~h~~~v~~~~~~~~~--------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTK--------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EEEECCSSCEEEEEECSSS--------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred EEEeCCCCcEEEEEEcCCC--------------CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence 8999999999999999998 68999999999999999777788889999999999999999 67899
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMD 529 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~D 529 (1019)
++|+.|++|++||++++.....+.. .+...+..+.++| ++.+|++|+.|
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT-----------------------------GQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC-----------------------------CCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred EEEeCCCeEEEEECCCCCccceecc-----------------------------CCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 9999999999999987765444332 1223344555554 77899999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
++|++||+.++ .....+.+|. ..|.+++|+|++.+|++|+.||+|+|||+.+++++.++..|...+.+++|+|++
T Consensus 208 ~~i~iWd~~~~---~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (304)
T 2ynn_A 208 LTIKIWDYQTK---SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (304)
T ss_dssp SEEEEEETTTT---EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred CeEEEEeCCCC---ccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence 99999999887 4567888987 679999999999999999999999999999999999999999999999999988
Q ss_pred Cc-EEEEEeCCCcEEEE
Q psy307 610 PS-KVVTAGWDAATAKV 625 (1019)
Q Consensus 610 ~~-~l~s~s~Dg~I~iw 625 (1019)
.. ++++|+.||.+ +|
T Consensus 283 ~~~~~asg~~~g~~-~~ 298 (304)
T 2ynn_A 283 RKNYIASGFDNGFT-VL 298 (304)
T ss_dssp GGGCEEEEETTEEE-EE
T ss_pred CceEEEEecCCceE-EE
Confidence 54 47777766654 44
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-34 Score=354.73 Aligned_cols=313 Identities=18% Similarity=0.258 Sum_probs=247.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCc----------------cC-----------------------Cccceeeecc
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRC----------------FL-----------------------PKTQVHTWEG 333 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~----------------~l-----------------------p~~~i~~l~g 333 (1019)
.++++|+++++++.|+.|+||+....... +. ..+.+.++.+
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~g 145 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 145 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecC
Confidence 45678888888888888888876321100 00 1123456789
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
|.+.|++++|+|++..+|++|+.|++|++||. ...++..++.+|...|.+++|+|+| .+|++|+.
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~~~~~l~~H~~~V~~v~fspdg--------------~~las~s~ 210 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDG--------------SLFASTGG 210 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCeEeeeeccccCceEEEEECCCC--------------CEEEEEEC
Confidence 99999999999975567999999999999998 5668889999999999999999999 69999999
Q ss_pred CCcEEEEEccCCCeEEEEEc-------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----------
Q psy307 414 DCRVKLWEVYKEHRCVRTYY-------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT----------- 475 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~-------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~----------- 475 (1019)
|++|++||+ ..+.+...+. +|.+.|.+++|+|+|++|++++.|++|++||+++++++.++.
T Consensus 211 D~~i~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 211 DGTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TSCEEEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCcEEEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 999999999 4555666663 799999999999999999999999999999999987765542
Q ss_pred ---------------------------------cCCceEEEEEecCCCeeee----------ccCCCce-----------
Q psy307 476 ---------------------------------SRKVAYCVKFHPDEDKQHL----------DIPVDMK----------- 501 (1019)
Q Consensus 476 ---------------------------------~~~~v~~v~~~p~~~~~~~----------~~~~~~~----------- 501 (1019)
+...+.+++|+|++..++. +......
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 2346889999998765443 1100000
Q ss_pred ---------------------eeeC---------------------------------------------------CCCC
Q psy307 502 ---------------------YIAD---------------------------------------------------PTMH 509 (1019)
Q Consensus 502 ---------------------~i~~---------------------------------------------------~~~~ 509 (1019)
.+.. .+..
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 0000 0123
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cc
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT-TK 588 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t-~~ 588 (1019)
.+.+++|+|+|++|++|+.|++|++||+.++.. ..... .+|. ..|.+++|+|||++|++++.|++|++||+.+ ++
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~--~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHP--AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECS--SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCC--CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 456899999999999999999999999976421 12233 5665 6799999999999999999999999999988 66
Q ss_pred eeee--eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 589 LFKK--WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 589 ~l~~--l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
++.. +.+|.+.|.+++|+|++ .+|+++|.|++|++|.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWN 564 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred eeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEEE
Confidence 6554 34599999999999998 6999999999997763
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=330.95 Aligned_cols=308 Identities=20% Similarity=0.334 Sum_probs=241.0
Q ss_pred cceeeeccCCC-CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE-EE-EecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 326 TQVHTWEGHTK-GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC-VR-TYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~-~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~-~~-~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.++.++.+|.+ .|.+++|+|+ +.+|++|+.||+|+|||+...... .. ...+|...|.+++|+|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----------- 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----------- 73 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-----------
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-----------
Confidence 56788999998 9999999996 889999999999999999554322 22 346899999999999998
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.|++|++||+.... .++..+.+|...|.+++|+|++++|++|+.|++|++||++++......
T Consensus 74 ---~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~------- 143 (345)
T 3fm0_A 74 ---NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV------- 143 (345)
T ss_dssp ---SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE-------
T ss_pred ---CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE-------
Confidence 699999999999999995543 567889999999999999999999999999999999999876432111
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL 561 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v 561 (1019)
.....+...|.+++|+|++.+|++++.|+.|++||..... ......+.+|. ..|.++
T Consensus 144 --------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~~~~h~--~~v~~l 200 (345)
T 3fm0_A 144 --------------------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-WVCCATLEGHE--STVWSL 200 (345)
T ss_dssp --------------------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-EEEEEEECCCS--SCEEEE
T ss_pred --------------------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-EEEEEEecCCC--CceEEE
Confidence 1112344667889999999999999999999999987652 12346778887 779999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCC---------------ceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTT---------------KLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~---------------~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|+|+|++|++|+.||+|+|||.... +++.++.+ |...|.+++|+|++ ..+++++.|+.|++|
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVF 279 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEE
Confidence 99999999999999999999996321 23444554 88899999999998 589999999999877
Q ss_pred eccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecC
Q psy307 626 QDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSA 705 (1019)
Q Consensus 626 wd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSP 705 (1019)
..... ..+. ...+.+.. .....|.+.|.+++|+|
T Consensus 280 ~~~~~---------~~~~-------------------------~~~~~~~~------------~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 280 QEDPN---------SDPQ-------------------------QPTFSLTA------------HLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp EECTT---------SCTT-------------------------SCCEEEEE------------EETTSSSSCEEEEEECS
T ss_pred EeCCC---------CCcc-------------------------eeeEEEEe------------eecccccCcEeEeEEeC
Confidence 32110 0000 00010000 00124778999999999
Q ss_pred CccHHHHHhhcCCCchhhHHH
Q psy307 706 SKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 706 d~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
++ ...|++++.||+|++|+.
T Consensus 314 ~~-~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 314 KE-PGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp SS-TTEEEEEETTSCEEEEEE
T ss_pred CC-ceEEEEcCCCCcEEEEEe
Confidence 86 236889999999999983
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-34 Score=326.74 Aligned_cols=275 Identities=18% Similarity=0.265 Sum_probs=239.3
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-----
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----- 368 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----- 368 (1019)
++++|+.+++++.|+.|++|+... .+..+.+..|...|.+++|+|+ +.+|++|+.|+.|++|++...
T Consensus 72 ~s~d~~~l~s~s~Dg~v~vWd~~~-------~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 72 WCKDKRRIVSSSQDGKVIVWDSFT-------TNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTT-------CCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCC-------CCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccc
Confidence 577899999999999999998653 3567788999999999999995 899999999999999998432
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec--
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-- 446 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-- 446 (1019)
......+.+|...|.+++|+|++ ..|++|+.|++|++||+ ..++++..+.+|...|.+++|+|
T Consensus 144 ~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~s~D~~v~lwd~-~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 144 AAKKKSVAMHTNYLSACSFTNSD--------------MQILTASGDGTCALWDV-ESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp GGGCEEEEECSSCEEEEEECSSS--------------SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECCCS
T ss_pred cccceeeeccCCcEEEEEEeCCC--------------CEEEEEeCCCcEEEEeC-CCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 13456677899999999999988 68999999999999999 66778899999999999999987
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+++.|++|+.||+|++||+++++++..+.. |...|.+++|+|++.+|+++
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~------------------------------h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFET------------------------------HESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECC------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------------CCCCeEEEEEeCCCCEEEEE
Confidence 468999999999999999999988776653 23457778888899999999
Q ss_pred ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
+.|++|++||++... ....+..+.....+.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|.+.|.+++|+
T Consensus 259 s~D~~v~lwd~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 259 SDDATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp ETTSCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCc---EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 999999999998763 23444444333568899999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|++|+.||+|++|
T Consensus 336 pdg-~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 336 PDG-TAFCSGSWDHTLRVW 353 (354)
T ss_dssp TTS-SCEEEEETTSEEEEE
T ss_pred CCC-CEEEEEcCCCCEEec
Confidence 998 699999999999887
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-34 Score=318.14 Aligned_cols=258 Identities=19% Similarity=0.298 Sum_probs=219.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+..++|++|.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+.+++.+.+|..+|.+++|+|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 67 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARK-------------- 67 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGG--------------
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCC--------------
Confidence 456789999999999999996 889999999999999999 5567888999999999999999998
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceE-EEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECI-SRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i-~~~~~~~~v~~v~ 484 (1019)
++|++|+.|++|++||+ ..++++..+.+|...|.+++|+|++++|++|+.|++|++||++++... ..+.
T Consensus 68 ~~l~s~s~d~~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~--------- 137 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--------- 137 (304)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC---------
T ss_pred CEEEEECCCCEEEEEEC-CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc---------
Confidence 69999999999999999 667788899999999999999999999999999999999999877432 3332
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.|...|.+++|+| ++..|++|+.|++|++||+...... .....+|. ..+..+.|
T Consensus 138 ---------------------~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~--~~v~~~~~ 192 (304)
T 2ynn_A 138 ---------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQE--RGVNYVDY 192 (304)
T ss_dssp ---------------------CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--EEEECCCT--TCEEEEEE
T ss_pred ---------------------ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCc--CcEEEEEE
Confidence 2345677778887 5789999999999999999765322 22223343 45788888
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee
Q psy307 564 SP--DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 564 sp--dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
+| ++.+|++|+.||+|+|||+++++++.++.+|...|.+++|+|++ .+|++|+.||+|++| +....+....
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iW-d~~~~~~~~~ 265 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW-NSSTYKVEKT 265 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE-ETTTCCEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEE-ECCCCceeee
Confidence 76 78899999999999999999999999999999999999999998 599999999999665 5544444433
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.7e-34 Score=324.18 Aligned_cols=291 Identities=15% Similarity=0.201 Sum_probs=242.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+...+++||.+.|++++|+|+ +.+|+||+.||+|+|||. ........+..|...|.+++|+|+|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g-------------- 118 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSG-------------- 118 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTS--------------
T ss_pred EEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCC--------------
Confidence 567899999999999999996 789999999999999998 4456677888899999999999999
Q ss_pred cEEEEEeCCCcEEEEEccCC-----CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 406 HLLLSCSMDCRVKLWEVYKE-----HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~-----~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
.+|++|+.|+.+++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+..+.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-- 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG-- 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC--
Confidence 68999999999999998432 13456677899999999999999999999999999999999999888876542
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
..+.+++++| +|++|++|+.||.|++||++++ .....+.+|. ..|
T Consensus 197 ----------------------------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h~--~~v 243 (354)
T 2pbi_B 197 ----------------------------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETHE--SDV 243 (354)
T ss_dssp ----------------------------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCE
T ss_pred ----------------------------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCC--CCe
Confidence 2333444444 5789999999999999999887 4457788887 779
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeee
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVE 636 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e 636 (1019)
.+++|+|+|.+|++|+.||+|++||+++++.+..+..+ ...+.+++|+|++ .++++++.||+|++| +...
T Consensus 244 ~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vw-d~~~------ 315 (354)
T 2pbi_B 244 NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVW-DVLK------ 315 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEE-ETTT------
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEE-ECCC------
Confidence 99999999999999999999999999998887776543 3478999999998 699999999999776 2210
Q ss_pred ccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhc
Q psy307 637 MEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKL 716 (1019)
Q Consensus 637 ~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~ 716 (1019)
+... ..+ .-|.+.|.+++|+|++ +.|++++
T Consensus 316 --------------------------------~~~~-~~l---------------~~h~~~v~~l~~spdg--~~l~sgs 345 (354)
T 2pbi_B 316 --------------------------------GSRV-SIL---------------FGHENRVSTLRVSPDG--TAFCSGS 345 (354)
T ss_dssp --------------------------------CSEE-EEE---------------CCCSSCEEEEEECTTS--SCEEEEE
T ss_pred --------------------------------CceE-EEE---------------ECCCCcEEEEEECCCC--CEEEEEc
Confidence 0000 000 0367789999999999 7899999
Q ss_pred CCCchhhHH
Q psy307 717 SDKNASLEE 725 (1019)
Q Consensus 717 ~d~~i~lw~ 725 (1019)
.|++|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999994
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=321.34 Aligned_cols=285 Identities=21% Similarity=0.323 Sum_probs=231.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~ 371 (1019)
.++++|+.+++++.|+.|++|+...... ........+|.+.|++++|+|+ +.+|++|+.|++|+||++.... .+
T Consensus 23 ~~sp~g~~las~~~D~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 23 AWNPAGTLLASCGGDRRIRIWGTEGDSW----ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp EECTTSSCEEEEETTSCEEEEEEETTEE----EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCCcc----eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEE
Confidence 4678999999999999999998753211 0112234799999999999995 8899999999999999985443 57
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.... .++..+.+|...|.+++|+|+++
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~--------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSG--------------NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEccCCCCCceEEEEeCCC--------------CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 78899999999999999998 799999999999999996543 56778899999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
+|++++.|++|++||++++...... ....|...|.+++|+|+|++|++++.|
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~----------------------------~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCA----------------------------TLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEE----------------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEE----------------------------EecCCCCceEEEEECCCCCEEEEEeCC
Confidence 9999999999999998776432111 112345678889999999999999999
Q ss_pred CeEEEEEccCcccc------------cceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------
Q psy307 530 NKILIFSALNRFKL------------NRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL------- 589 (1019)
Q Consensus 530 g~I~iwd~~~~~~~------------~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~------- 589 (1019)
++|++|+....... ..+..+.+ |. ..|.+++|+|++.+|++++.|+.|++|+...+..
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS--RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS--SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCC--CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 99999997432111 12233444 44 6799999999999999999999999999876431
Q ss_pred --eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 590 --FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 590 --l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.....+|.+.|++++|+|+++.+|+|||.||+|++|.
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 2233589999999999999867999999999997764
No 19
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.1e-34 Score=325.59 Aligned_cols=281 Identities=20% Similarity=0.316 Sum_probs=225.3
Q ss_pred CCCCCCCeeeeCCC------CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 293 PTDYQGRSFLHPPH------DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~------D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
.++++|+.+++++. |+.+++|+...... .........+|...|++++|+|+ + .+++++.||+|+|||+.
T Consensus 49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~---~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP---NESLCTAGVQTEAGVTDVAWVSE-K-GILVASDSGAVELWEIL 123 (357)
T ss_dssp EECSSSCEEEEEECSSSSSCCEEEEEESSCC------CGGGCSEEEECSSCEEEEEEETT-T-EEEEEETTSCEEEC---
T ss_pred EECCCCCEEEEEcCCCCccccCeEEEEECCCCCc---ceeEecccCCCCCCEEEEEEcCC-C-CEEEEECCCEEEEeecc
Confidence 57889999999987 66788886643221 22344566789999999999996 4 46678899999999995
Q ss_pred CCcEE---EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE
Q psy307 367 KERRC---VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 367 ~~~~~---~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~ 443 (1019)
..... .....+|...|.+++|+|++ ++|++|+.||.|++||+ ..+.++..+.+|...|.+++
T Consensus 124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------~~l~sgs~dg~v~iwd~-~~~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 124 EKESLLVNKFAKYEHDDIVKTLSVFSDG--------------TQAVSGGKDFSVKVWDL-SQKAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp -----CCCCEEECCCSSCEEEEEECSSS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEE
T ss_pred ccceeEEEeeccCCCCCCEEEEEECCCC--------------CEEEEEeCCCeEEEEEC-CCCcEEEEEcCCCCCEEEEE
Confidence 43321 13455899999999999999 69999999999999999 67788999999999999999
Q ss_pred EecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CC
Q psy307 444 FNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NK 521 (1019)
Q Consensus 444 fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~ 521 (1019)
|++++. .+++++.|++|++||+++++++..+.. ..+...+.+++|+|+ +.
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----------------------------~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----------------------------CASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----------------------------TTCCSCEEEEEECTTSTT
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeee----------------------------ccccccccchhhhhcccc
Confidence 999885 689999999999999998876543321 112344667777876 56
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
+|++|+.|+.|++||++++ .....+.+|. ..|.+++|+|++ ++|++|+.||+|+|||+.+++++..+ +|.+.|
T Consensus 241 ~la~g~~d~~i~~wd~~~~---~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V 314 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKNP---DSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFV 314 (357)
T ss_dssp EEEEEESSSCEEEEESSCG---GGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCE
T ss_pred eEEEeecccceeEEECCCC---cEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCE
Confidence 8899999999999999887 4457788887 679999999987 58999999999999999999887765 799999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
++++|+|.++.+|+|||.||+|++|.-
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 999999954479999999999988753
No 20
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-34 Score=375.31 Aligned_cols=402 Identities=16% Similarity=0.250 Sum_probs=299.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..++++
T Consensus 622 ~~s~~~~~l~s~~~d~~i~vw~~~~-------~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~~~~~~ 692 (1249)
T 3sfz_A 622 CFSQDGQRIASCGADKTLQVFKAET-------GEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-ATGKLV 692 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCC-------CCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-CCCceE
Confidence 3678999999999999999998763 3568899999999999999996 889999999999999999 556788
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++. ..++++|+.||.|++||+ ..+.+...+.+|.+.|.+++|+|++++|+
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~------------~~~l~sg~~d~~v~vwd~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSN------------HLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSS------------CCEEEEEETTSCEEEEET-TSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred EEEcCCCCcEEEEEEecCCC------------ceEEEEEeCCCeEEEEEC-CCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 99999999999999999652 258999999999999999 66778889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCC--------------ceEEEEEecCCCeeeeccCCC-----------ceeeeCCC
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRK--------------VAYCVKFHPDEDKQHLDIPVD-----------MKYIADPT 507 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~--------------~v~~v~~~p~~~~~~~~~~~~-----------~~~i~~~~ 507 (1019)
+++.||+|++||+.+++....+.... .+.+++|+|++...+...... .......+
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 99999999999999998877765322 567889999988766533211 12233367
Q ss_pred CCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe----
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD---- 583 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD---- 583 (1019)
...+.+++|+|++.++++++.||.|++||+.++ .....+.+|. +.|.+++|+|+|++|++++.||.|++||
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR---LKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTT---EEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 788999999999999999999999999999876 3345566665 5577777777777777776666666665
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q psy307 584 ---------------------------------------------------------------------------WKTTK 588 (1019)
Q Consensus 584 ---------------------------------------------------------------------------l~t~~ 588 (1019)
+.+++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 34455
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceee--c-ccccccchhhhhhhcccc
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQ--F-NQTLTLSSIIQEICSGWS 665 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~--l-~~~~~LSs~~~~~~~~ws 665 (1019)
.+..+.+|.+.|.+++|+|++ .++++++.||.|++| +....+.... ..+...+.. + .....++...+..+..|+
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vw-d~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVW-NWQTGDYVFL-QAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEE-ETTTTEEECC-BCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred eeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEE-ECCCCceEEE-ecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 566677899999999999998 689999999999766 4333322211 111111110 0 011111111122222333
Q ss_pred cC---------------------CCceeEEEeecCCCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCC
Q psy307 666 LS---------------------DSEQYALQFSETNNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 666 ls---------------------~~e~~al~~sd~~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
+. +...+++..+.++...+|.......+ |.+.|.+++|||++ +.|++++.||
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg--~~lat~~~dg 1149 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG--ILLATGDDNG 1149 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSS--SEEEEEETTS
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 22 12222223333334445554444433 58889999999998 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|++|+.
T Consensus 1150 ~i~vwd~ 1156 (1249)
T 3sfz_A 1150 EIRIWNV 1156 (1249)
T ss_dssp CCCEEES
T ss_pred EEEEEEC
Confidence 9999984
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=318.68 Aligned_cols=297 Identities=18% Similarity=0.262 Sum_probs=229.1
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-cEEEEEe-cc-cCccEeEEEEcCCCCceeEEEeec
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-RRCVRTY-YG-HRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~-~~~~~~~-~g-h~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+++.++++|.+.|++++|+|+ +|++|+.||+|+|||+... ..+...+ .+ |...|.+++|+|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------- 70 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------- 70 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence 3567899999999999999985 9999999999999999543 2455556 45 99999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEEccC------CCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC----ceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYK------EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG----ECI 471 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~------~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~----~~i 471 (1019)
.+|++|+.|++|+|||+.. ...++..+.+|...|.+++|+|++++|++|+.|++|++||++.. +++
T Consensus 71 ----~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 71 ----SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp ----SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred ----CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 6999999999999999843 23567889999999999999999999999999999999999532 222
Q ss_pred EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec
Q psy307 472 SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 472 ~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
..+ ..|...|.+++|+|++.+|++++.|++|++||...+. ......+.+
T Consensus 147 ~~~------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-~~~~~~~~~ 195 (330)
T 2hes_X 147 SVL------------------------------QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-WECVAVLNG 195 (330)
T ss_dssp EEE------------------------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECC
T ss_pred EEe------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-eeEEEEccC
Confidence 222 2344667888999999999999999999999987542 234567888
Q ss_pred cccccceEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC--------ceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 552 HMVAGYACSLDFSPD--MSYLISGDADGKCYIWDWKTT--------KLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 552 h~~~~~V~~v~fspd--g~~Lasgs~DG~I~IWDl~t~--------~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
|. +.|.+++|+|+ +.+|++|+.||+|+|||+.++ .....+.. |...|.+++|++++ +|++++.||
T Consensus 196 h~--~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg 271 (330)
T 2hes_X 196 HE--GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADG 271 (330)
T ss_dssp CS--SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTS
T ss_pred CC--CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCC
Confidence 87 77999999998 779999999999999999765 34455554 89999999999764 799999999
Q ss_pred cEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCc-eeEEEeecCCCceEEeccccccccCC-ce
Q psy307 621 ATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSE-QYALQFSETNNKNYITEKNRNEIKNG-SV 698 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e-~~al~~sd~~~~~~it~~~~~~I~ng-~V 698 (1019)
+|++|. ... ++ ...... ..-|.. .|
T Consensus 272 ~v~iw~-~~~--------------------------------------~~~~~~~~~--------------~~~h~~~~v 298 (330)
T 2hes_X 272 VLAVYE-EVD--------------------------------------GEWKVFAKR--------------ALCHGVYEI 298 (330)
T ss_dssp CEEEEE-EET--------------------------------------TEEEEEEEE--------------SCTTTTSCE
T ss_pred EEEEEE-cCC--------------------------------------CceEEEecc--------------ccccccceE
Confidence 998773 110 00 000000 002444 78
Q ss_pred EEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 699 LRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 699 l~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.+++|+|....+.|++++.|++|+||+.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 8999999422267899999999999973
No 22
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.1e-33 Score=308.14 Aligned_cols=280 Identities=27% Similarity=0.493 Sum_probs=238.9
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.....++.||.+.|++++|+|+ +.+|++|+.||.|++|++ ..++....+.+|...|.+++|+|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCC-------------
Confidence 3567889999999999999995 889999999999999999 4556788899999999999999998
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCV 483 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v 483 (1019)
++|++|+.||.|++||+ ..+.++..+.+|...|.+++|+|++++|++++.|++|++||+++++++..+..+ ..+.++
T Consensus 78 -~~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 78 -NLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp -SEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred -CEEEEECCCCEEEEEEC-CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 69999999999999999 566788899999999999999999999999999999999999999999888765 678999
Q ss_pred EEecCCCeeeeccCCC------------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec
Q psy307 484 KFHPDEDKQHLDIPVD------------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG 551 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~------------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g 551 (1019)
.|+|++...+...... ...+...+...+..++|+|++++|++++.||.|++||+.++ .....+.+
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~ 232 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTG 232 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECS
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEe
Confidence 9999887655422211 11223344566888999999999999999999999999876 34566777
Q ss_pred cccccceEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe--CCCcEEEE
Q psy307 552 HMVAGYACSLDFS-PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG--WDAATAKV 625 (1019)
Q Consensus 552 h~~~~~V~~v~fs-pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s--~Dg~I~iw 625 (1019)
|..........++ +++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++ .|++|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEE
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEe
Confidence 7644333333444 688999999999999999999999999999999999999999998 5888886 69999776
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=324.62 Aligned_cols=287 Identities=18% Similarity=0.244 Sum_probs=219.3
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC----------CcEEEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK----------ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~----------~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
.|...|.+++|+|+ |.+|++++ |+++++||... ..........|...|.+++|+|++
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----------- 94 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER----------- 94 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----------
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-----------
Confidence 56778999999996 78888877 77888887310 001111122355678888888875
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.|++|+.||+|+|||+..... ....+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+..+
T Consensus 95 ----~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-- 168 (344)
T 4gqb_B 95 ----GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-- 168 (344)
T ss_dssp ----EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--
T ss_pred ----eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc--
Confidence 688999999999999965442 23345689999999999999999999999999999999999988877643
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...|.+++|+|++ .+|++++.|++|++||++++.. ...+..+.....+
T Consensus 169 ----------------------------~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 169 ----------------------------AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLP 217 (344)
T ss_dssp ----------------------------SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCE
T ss_pred ----------------------------CCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeeccc
Confidence 2445566667766 4789999999999999988743 3444333333568
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 559 CSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 559 ~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
.+++|+| ++++|++|+.||+|+|||+++++++.++.+|...|++++|+|++..+|++|+.||+|++| |....
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw-d~~~~------ 290 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL-DSSLS------ 290 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE-CTTCC------
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE-ECCCC------
Confidence 9999999 467899999999999999999999999999999999999999987789999999999776 32211
Q ss_pred cccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcC
Q psy307 638 EKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLS 717 (1019)
Q Consensus 638 ~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~ 717 (1019)
+ .+.+ .-|.+.|.+++|||++. ..+++++.
T Consensus 291 --------------------------------~--~~~~---------------~~H~~~V~~v~~sp~~~-~llas~s~ 320 (344)
T 4gqb_B 291 --------------------------------E--LFRS---------------QAHRDFVRDATWSPLNH-SLLTTVGW 320 (344)
T ss_dssp --------------------------------E--EEEE---------------CCCSSCEEEEEECSSST-TEEEEEET
T ss_pred --------------------------------c--EEEE---------------cCCCCCEEEEEEeCCCC-eEEEEEcC
Confidence 0 0110 13678899999999972 33568899
Q ss_pred CCchhhHHH
Q psy307 718 DKNASLEEK 726 (1019)
Q Consensus 718 d~~i~lw~~ 726 (1019)
|++|++|+.
T Consensus 321 D~~v~~w~v 329 (344)
T 4gqb_B 321 DHQVVHHVV 329 (344)
T ss_dssp TSCEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999974
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-34 Score=325.51 Aligned_cols=309 Identities=15% Similarity=0.204 Sum_probs=225.6
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC------CCeEEEEecCCCc---EE
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM------DCRVKLWEVYKER---RC 371 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~------Dg~I~IWdl~~~~---~~ 371 (1019)
++.+..+.....|+.++ ....+|.+.|++++|+|| |.+|++|+. |+.|++|+..... ..
T Consensus 19 ~~~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESL 86 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred EEecCCCccccccCCCC-----------CCcccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence 34444455566776542 123579999999999996 899999997 7889999874322 12
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE---EEEEccccccEeEEEEecCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC---VRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~---~~~l~~H~~~V~sl~fspdg 448 (1019)
.....+|...|.+++|+|++ .+++++.||+|+|||+...... .....+|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~V~~~~~s~d~---------------~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSEK---------------GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp CSEEEECSSCEEEEEEETTT---------------EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS
T ss_pred ecccCCCCCCEEEEEEcCCC---------------CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC
Confidence 23445788999999999987 4667899999999999544322 23456899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEe
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQS 527 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs 527 (1019)
++|++|+.|++|++||+++++++..+..+ ...|.+++|+|++ .++++++
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------------------------SSEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEECTTCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEccCCCceeeeec
Confidence 99999999999999999999888777643 2345566666666 4788999
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
.||.|++||++++... ..+..+.....+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+.+|...|++++|+
T Consensus 202 ~dg~v~~wd~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s 278 (357)
T 4g56_B 202 EDGRILLWDTRKPKPA---TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278 (357)
T ss_dssp TTSCEEECCTTSSSCB---CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC
T ss_pred cCCceEEEECCCCcee---eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc
Confidence 9999999999876433 33333333467999999997 5689999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEe
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYIT 686 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it 686 (1019)
|++..+|++|+.||+|++| |.+..+ . +. .
T Consensus 279 p~~~~~lasgs~D~~i~iw-d~~~~~---------------------------------------~-~~----------~ 307 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVL-DADFSE---------------------------------------V-FR----------D 307 (357)
T ss_dssp SSSSCCEEEEETTSCEEEE-CTTSCE---------------------------------------E-EE----------E
T ss_pred CCCCCEEEEEeCCCEEEEE-ECCCCc---------------------------------------E-eE----------E
Confidence 9987789999999999776 332110 0 00 0
Q ss_pred ccccccccCCceEEEEecC-CccHHHHHhhcCCCchhhHHHH
Q psy307 687 EKNRNEIKNGSVLRLAFSA-SKTADDILSKLSDKNASLEEKT 727 (1019)
Q Consensus 687 ~~~~~~I~ng~Vl~LafSP-d~~a~~Ilt~~~d~~i~lw~~~ 727 (1019)
.-|.+.|++|+||| ++ ..|++++.|++|++|+..
T Consensus 308 -----~~H~~~V~~vafsP~d~--~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 308 -----LSHRDFVTGVAWSPLDH--SKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp -----CCCSSCEEEEEECSSST--TEEEEEETTSCEEEEECC
T ss_pred -----CCCCCCEEEEEEeCCCC--CEEEEEcCCCeEEEEECC
Confidence 02677899999999 55 678999999999999853
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-33 Score=324.96 Aligned_cols=265 Identities=20% Similarity=0.370 Sum_probs=223.9
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEE-------
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISA------- 397 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~------- 397 (1019)
..+.+++.||.+.|++++|+|+ +.+|+||+.||+|+|||+ ..+.....+.+|...|.+++|+|+|..++++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 3567899999999999999996 789999999999999999 5567788999999999999999998766543
Q ss_pred -----------------------------EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-----ccccccEeEEE
Q psy307 398 -----------------------------IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-----YGHRQAVRDIC 443 (1019)
Q Consensus 398 -----------------------------i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-----~~H~~~V~sl~ 443 (1019)
+.|+|..+..|++|+.|++|++||+ ..+..+..+ .+|...|.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~-~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT-TTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc-CCCcEEEEeecccCCCCccCeEEEE
Confidence 3466666778999999999999999 455566665 68999999999
Q ss_pred Eec-CCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 444 FNN-TGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 444 fsp-dg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
|++ ++++|++|+.|++|++||++. +.++..+. .|...|.+++|+|+++
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~------------------------------~h~~~v~~v~~~p~~~ 262 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYH------------------------------GHEGDINSVKFFPDGQ 262 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC------------------------------CCSSCCCEEEECTTSS
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEEC------------------------------CcCCCeEEEEEecCCC
Confidence 987 788999999999999999974 34433332 3456788999999999
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEecccc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee---
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMV-----AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW--- 593 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~-----~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l--- 593 (1019)
+|++|+.||+|++||++++.. ...+..+.. ...+.+++|+|+|++|++|+.||.|++||+.+++.+..+
T Consensus 263 ~l~s~s~D~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 263 RFGTGSDDGTCRLFDMRTGHQ---LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp EEEEECSSSCEEEEETTTTEE---EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS
T ss_pred eEEEEcCCCeEEEEECCCCcE---EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc
Confidence 999999999999999998733 344443321 134889999999999999999999999999999888777
Q ss_pred -eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 594 -KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 594 -~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+|.+.|.+++|+|++ .+|+|||.||+|++|.
T Consensus 340 ~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWA 372 (380)
T ss_dssp CSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEE
T ss_pred cCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEe
Confidence 6899999999999998 6999999999998873
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-32 Score=312.35 Aligned_cols=277 Identities=22% Similarity=0.401 Sum_probs=224.0
Q ss_pred cceeeeccCCCCeEEEEE-----cCCCCcEEEEeeCCCeEEEEecCCC------cEEEEEecccCccEeEEEEcCCCCce
Q psy307 326 TQVHTWEGHTKGISAIRW-----FPKSAHLLLSCSMDCRVKLWEVYKE------RRCVRTYYGHRQAVRDICFNNTGTNF 394 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~f-----spd~g~lLaSgs~Dg~I~IWdl~~~------~~~~~~~~gh~~~V~~i~fspdg~~~ 394 (1019)
.+..+++||.+.|++++| ++.++.+|+||+.|++|+|||+... +.+...+.+|...|.+++|+|++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--- 88 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--- 88 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---
Confidence 467789999999999999 7745889999999999999998542 35677899999999999999998
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.+|++|+.|++|++||+ ..+.++..+.+|...|.+++|+|++++|++++.|++|++||+... +....
T Consensus 89 -----------~~l~s~s~D~~v~lwd~-~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 155 (343)
T 2xzm_R 89 -----------CFAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSS 155 (343)
T ss_dssp -----------TEEEEEETTSEEEEEET-TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEEC
T ss_pred -----------CEEEEEcCCCcEEEEEC-CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeee
Confidence 68999999999999999 566788889999999999999999999999999999999999843 33333
Q ss_pred e----cCCceEEEEEecCCC----------eeee----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 475 T----SRKVAYCVKFHPDED----------KQHL----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 475 ~----~~~~v~~v~~~p~~~----------~~~~----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
. +...+.+++|+|++. ..+. +...........|...|.+++|+|+|++|++|+.||
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg 235 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCC
Confidence 2 345688999999762 1211 212222233456778899999999999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee--eee-----------ccC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK--KWK-----------AHD 597 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~--~l~-----------~h~ 597 (1019)
.|++||+..... ....+. +. ..|.+++|+|++.++++| .|+.|++||+.+++... .+. +|.
T Consensus 236 ~v~iwd~~~~~~--~~~~~~-~~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 236 KLLIWDILNLTY--PQREFD-AG--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp EEEEEESSCCSS--CSEEEE-CS--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred eEEEEECCCCcc--cceeec-CC--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 999999954322 223332 22 459999999999988755 57789999998876543 443 688
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 598 GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 598 ~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..|.+++|+|++ .+|++|+.||+|++|
T Consensus 310 ~~v~~~~~sp~g-~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 310 PQCTSLAWNALG-KKLFAGFTDGVIRTF 336 (343)
T ss_dssp CCEEEEEECSSS-CCEEEEETTSEEEEE
T ss_pred CceEEEEECCCC-CeEEEecCCceEEEE
Confidence 899999999998 589999999999776
No 27
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-32 Score=308.96 Aligned_cols=271 Identities=20% Similarity=0.337 Sum_probs=230.7
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++++.|+.|++|+...... ....++.++++|...|++++|+|+ +.+|++|+.|++|+|||+ ..++++..+.
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~-~~~~~~~~~~ 104 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDV-ATGETYQRFV 104 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEE
T ss_pred CccEEEEecCCccEEEecCCCCCc--cccccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCCeeEEEc
Confidence 358899999999999998753221 123467889999999999999996 889999999999999999 5667889999
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecC------CCE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNT------GTN 450 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspd------g~~ 450 (1019)
+|...|.+++|+|++ .+|++|+.|++|++||+. +.++..+.+|...|.++.|+|. +..
T Consensus 105 ~h~~~v~~~~~~~~~--------------~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 105 GHKSDVMSVDIDKKA--------------SMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp CCSSCEEEEEECTTS--------------CEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred cCCCcEEEEEEcCCC--------------CEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999998 699999999999999983 5678889999999999999985 448
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|++++.|++|++||++++++...+.. |...|.+++++|+|++|++++.||
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------------h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIG------------------------------HNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC------------------------------CCSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEeCCCEEEEEECCcchhheeecC------------------------------CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999998876655543 335677888899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee--------ccCCCEEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK--------AHDGVCIS 602 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~--------~h~~~V~s 602 (1019)
.|++||+.++. ....+..+ ..|.+++|+|+|.+|++++.+ .+++|++..+..+..+. .|...+.+
T Consensus 219 ~i~iwd~~~~~---~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 219 EIMLWNLAAKK---AMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp EEEEEETTTTE---EEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred eEEEEECCCCc---EEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 99999998763 34555554 569999999999999988765 49999999887776654 35667999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEE
Q psy307 603 TLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++|+|+| .+|++|+.||.|++|
T Consensus 292 ~~~spdg-~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 292 LAWSADG-QTLFAGYTDNVIRVW 313 (319)
T ss_dssp EEECTTS-SEEEEEETTSCEEEE
T ss_pred EEECCCC-CEEEEeecCceEEEE
Confidence 9999998 699999999999776
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-32 Score=330.93 Aligned_cols=399 Identities=15% Similarity=0.146 Sum_probs=296.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCC-eEEEEEcC--CCCcEEEEeeCCCeEEEEecCC--
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG-ISAIRWFP--KSAHLLLSCSMDCRVKLWEVYK-- 367 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~-V~~i~fsp--d~g~lLaSgs~Dg~I~IWdl~~-- 367 (1019)
.++++|+.++.+. ++.+.+|+..... .+.+.+..+.+|.+. |++++|+| + +.+|++|+.||.|+|||+..
T Consensus 25 ~~spdg~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 25 SYDPTTNAIAYPC-GKSAFVRCLDDGD---SKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp EEETTTTEEEEEE-TTEEEEEECCSSC---CSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEG
T ss_pred EECCCCCEEEEec-CCeEEEEECCCCC---CccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCc
Confidence 4678899999887 8899999876321 122568899999999 99999999 7 78999999999999999943
Q ss_pred -----CcEEEEEecccCccEeEEEEcCCCCcee-------------------------------EEEeecCCCCcEEEEE
Q psy307 368 -----ERRCVRTYYGHRQAVRDICFNNTGTNFI-------------------------------SAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 368 -----~~~~~~~~~gh~~~V~~i~fspdg~~~v-------------------------------s~i~~~p~~~~~L~sg 411 (1019)
...++..+.+|...|.+++|+|++..++ .++.|+|++..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 179 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence 3467788899999999999999987654 4567888887799999
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccc---cEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEE-----ecCCceEE
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQ---AVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRF-----TSRKVAYC 482 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~---~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~-----~~~~~v~~ 482 (1019)
+.|+.|++||+ ...+++..+.+|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .+...+.+
T Consensus 180 ~~d~~v~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 180 GDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp ETTTEEEEEET-TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred eCCCcEEEEeC-CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEE
Confidence 99999999998 67788899999999 9999999999 999999999999999999999999998 55678999
Q ss_pred EEEecCCCeeeeccCCCceeeeCC-----------C----CCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccccee
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADP-----------T----MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~-----------~----~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
+.|+ ++..++.........+++. + ...+.++.++ ++.++++++.||.|++||+.++.. ..
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~---~~ 333 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEV---LK 333 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEE---EE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcE---EE
Confidence 9999 7665554322222222111 1 2345566664 899999999999999999876422 22
Q ss_pred EEeccc-------------------------------cccc---------------------------------------
Q psy307 548 TFEGHM-------------------------------VAGY--------------------------------------- 557 (1019)
Q Consensus 548 ~l~gh~-------------------------------~~~~--------------------------------------- 557 (1019)
.+.+|. ....
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence 333322 0012
Q ss_pred -----------------------------------eEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcee-eeeeccCCCE
Q psy307 558 -----------------------------------ACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLF-KKWKAHDGVC 600 (1019)
Q Consensus 558 -----------------------------------V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l-~~l~~h~~~V 600 (1019)
+.+++|+ +++|++|+. ||.|++||+.+++.. ..+.+|...|
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 2233333 556666777 778888888776655 6677899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc-cCCceeecccccccchhhhhhhcccccCC----------C
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK-QVPQLYQFNQTLTLSSIIQEICSGWSLSD----------S 669 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~-~v~ql~~l~~~~~LSs~~~~~~~~wsls~----------~ 669 (1019)
.+++|+|++ .+|++++.||.|++| +....+......+ +...+.. ..+++ .
T Consensus 492 ~~~~~s~~g-~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~h~~~v~~-----------------~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 492 SYISISPSE-TYIAAGDVMGKILLY-DLQSREVKTSRWAFRTSKINA-----------------ISWKPAEKGANEEEIE 552 (615)
T ss_dssp EEEEECTTS-SEEEEEETTSCEEEE-ETTTTEEEECCSCCCSSCEEE-----------------EEECCCC------CCS
T ss_pred EEEEECCCC-CEEEEcCCCCeEEEe-eCCCCcceeEeecCCCCceeE-----------------EEEcCccccccccccC
Confidence 999999998 699999999999665 5544444333322 2211111 11222 3
Q ss_pred ceeEEEeecCCCceEEecccc-ccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 670 EQYALQFSETNNKNYITEKNR-NEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 670 e~~al~~sd~~~~~~it~~~~-~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
..+++..+.++...+|..... ..+ |.+.|.+++|+|++ + |+++..|+.|++|+.
T Consensus 553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--T-LVSSGADACIKRWNV 612 (615)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--E-EEEEETTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC--C-eEEecCCceEEEEee
Confidence 334444444555556655544 222 68899999999999 5 999999999999974
No 29
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-32 Score=314.97 Aligned_cols=273 Identities=18% Similarity=0.315 Sum_probs=225.9
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc------------------cEeEEEEcCCCCce
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ------------------AVRDICFNNTGTNF 394 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~------------------~V~~i~fspdg~~~ 394 (1019)
+|.+.|++++|+|+ +.+|++|+ |+.++||++ ..+..+..+.+|.. .|.+++|+|+|
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--- 135 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--- 135 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTS---
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---
Confidence 69999999999996 78899876 789999999 44556666665542 36777777776
Q ss_pred eEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 395 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 395 vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
++|++|+.|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+
T Consensus 136 -----------~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 136 -----------KFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp -----------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -----------CEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 68999999999999999 667888899999999999999999999999999999999999999999999
Q ss_pred ecCCceEEEEEec-CCCeeeeccCCCceeee------------------CCCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 475 TSRKVAYCVKFHP-DEDKQHLDIPVDMKYIA------------------DPTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 475 ~~~~~v~~v~~~p-~~~~~~~~~~~~~~~i~------------------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
.....+.+++++| ++..++.........++ ..|...|.+++|+|+|++|++|+.||.|++|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 8888999999999 55544432211111111 3466789999999999999999999999999
Q ss_pred EccCccc---------ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 536 SALNRFK---------LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 536 d~~~~~~---------~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
|+.+... ......+.+|. ..|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|+
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EC---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred ECCCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9975421 12345677787 679999999999999999999999999999999999999999999999998
Q ss_pred C------CCCcEEEEEeCCCcEEEEe
Q psy307 607 P------HEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 607 p------~~~~~l~s~s~Dg~I~iww 626 (1019)
+ ++ .+|+|||.||+|++|.
T Consensus 362 ~~~~~~p~~-~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 362 NGSSLGPEY-NVFATGSGDCKARIWK 386 (393)
T ss_dssp SSCTTCTTC-EEEEEEETTSEEEEEE
T ss_pred CCcCcCCCC-CEEEEECCCCcEEECc
Confidence 7 34 6899999999998873
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.3e-32 Score=305.30 Aligned_cols=301 Identities=22% Similarity=0.348 Sum_probs=241.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
++..+|+||++.|++|+|+|+++++|+|||.||+|+|||+... ..+.+.+.+|...|.+++|+|++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg---------- 98 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG---------- 98 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS----------
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC----------
Confidence 4567899999999999999987899999999999999998543 34678899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.|+.|++|+. ...........+...+..+.+++++..|++++.|+.+++||+..........
T Consensus 99 ----~~l~s~~~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~------ 167 (340)
T 4aow_A 99 ----QFALSGSWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD------ 167 (340)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS------
T ss_pred ----CEEEEEcccccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe------
Confidence 69999999999999999 6667777788888999999999999999999999999999987654432211
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
..+...+..++++++ ..++++++.|+.|++||+.+. .....+.+|. +.|.
T Consensus 168 -----------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~--~~v~ 219 (340)
T 4aow_A 168 -----------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHT--GYLN 219 (340)
T ss_dssp -----------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEE
T ss_pred -----------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCC--CcEE
Confidence 122344555556554 457889999999999999876 4457778887 7799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++|+|+|++|++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++ .+++++.|+.|++| +.+........
T Consensus 220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~--~~~~~~~d~~i~iw-d~~~~~~~~~~-- 293 (340)
T 4aow_A 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR--YWLCAATGPSIKIW-DLEGKIIVDEL-- 293 (340)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSS--SEEEEEETTEEEEE-ETTTTEEEEEE--
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCC--ceeeccCCCEEEEE-ECCCCeEEEec--
Confidence 9999999999999999999999999999999988765 479999999986 57788889999776 33221111000
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
... . . ......|.+.|++++|+|++ +.|++++.||
T Consensus 294 -------------------------------------~~~--~-~---~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg 328 (340)
T 4aow_A 294 -------------------------------------KQE--V-I---STSSKAEPPQCTSLAWSADG--QTLFAGYTDN 328 (340)
T ss_dssp -------------------------------------CCC-------------CCCCCEEEEEECTTS--SEEEEEETTS
T ss_pred -------------------------------------ccc--c-e---eeeccCCCCCEEEEEECCCC--CEEEEEeCCC
Confidence 000 0 0 00011467889999999998 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|+||++
T Consensus 329 ~v~iW~~ 335 (340)
T 4aow_A 329 LVRVWQV 335 (340)
T ss_dssp CEEEEEE
T ss_pred EEEEEeC
Confidence 9999974
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=306.76 Aligned_cols=273 Identities=20% Similarity=0.305 Sum_probs=213.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeee-cc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC------CcEE
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK------ERRC 371 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~------~~~~ 371 (1019)
.+++++.|+.|++|+..... .+.+.++ .+ |.+.|++++|+|+ +.+|++|+.|++|+|||+.. ...+
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~ 99 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----FTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDL 99 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----CEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred EEEEEcCCCEEEEEEecCCC-----eEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence 89999999999999876321 2345555 45 9999999999996 78999999999999999842 2356
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEccccccEeEEEEecCC
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+..+.+|...|.+++|+|++ .+|++|+.|++|++||+... ..++..+.+|...|.+++|+|++
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g--------------~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDG--------------YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp EEEEC----CEEEEEECTTS--------------CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred EEEEcCCCCcEEEEEECCCC--------------CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 78899999999999999998 69999999999999999533 36788899999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC--ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC--CCEEE
Q psy307 449 TNFISAGYDRYLKLWDTESG--ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN--NKWLA 524 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~--~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd--g~~La 524 (1019)
.+|++++.|++|++||..++ +++..+.. |...|.+++|+|+ +.+|+
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNG------------------------------HEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECC------------------------------CSSCEEEEEECCSSSSCEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccC------------------------------CCCcEEEEEecCCCCeeEEE
Confidence 99999999999999998765 34444432 3345666777777 67899
Q ss_pred EEecCCeEEEEEccCcccc-----cceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeee-eec
Q psy307 525 CQSMDNKILIFSALNRFKL-----NRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK--LFKK-WKA 595 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~-----~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~--~l~~-l~~ 595 (1019)
+++.|++|++||+...... .....+.+ |. ..|.+++|++++ +|++|+.||+|+|||..+++ .+.. +.+
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK--RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS--SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccc--cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 9999999999998754211 12233333 54 679999999766 79999999999999998773 3333 467
Q ss_pred cCC-CEEEEEEcCC-CCcEEEEEeCCCcEEEE
Q psy307 596 HDG-VCISTLWHPH-EPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 596 h~~-~V~sl~~sp~-~~~~l~s~s~Dg~I~iw 625 (1019)
|.. .|.+++|+|. ++.+|++||.||+|++|
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 887 8999999994 33689999999999776
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.6e-33 Score=320.98 Aligned_cols=292 Identities=16% Similarity=0.240 Sum_probs=242.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.++++..|+.+++|+.... +....+.+| ..+....|+|+ +.+|++|+.||.|++||+ ..+.+.
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~-~~~~~~ 132 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIR-------DGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS-NFNLQR 132 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSE-------ETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT-TSCEEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccc-------ceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC-CCccee
Confidence 46778999999999999999987632 233445566 34445567774 889999999999999999 566778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+|++++|+
T Consensus 133 ~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 197 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG--------------EALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGRNVL 197 (420)
T ss_dssp EETTSSSSCEEEEEECTTS--------------SEEEEEETTSEEEEEET-TTCCCCEEEECCSSCEEEEEEETTTTEEE
T ss_pred eecccccCccEEEEECCCC--------------CEEEEEeCCCeEEEEeC-CCCcCceEEcCCCCcEEEEEEcCCCCEEE
Confidence 8888999999999999998 69999999999999999 55667788899999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEEec----CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 453 SAGYDRYLKLWDTESGECISRFTS----RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~----~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+++.|++|++||+++++++..+.. ...+.++.+.|..... +...+...+.+++|+|++++|++|+.
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~ 267 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTSKKNNLEFGTYGKYVIAGHV 267 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccCcccceEEcCCCCEEEEEcC
Confidence 999999999999999999998864 4568888888875432 22334567888999999999999999
Q ss_pred CCeEEEEEccCcccccceeEE-eccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCce-eeeeec-cCCCEEEEE
Q psy307 529 DNKILIFSALNRFKLNRKKTF-EGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTTKL-FKKWKA-HDGVCISTL 604 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l-~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~~~-l~~l~~-h~~~V~sl~ 604 (1019)
||.|++||+.++... ..+ .+|. ..|.+++|+|++. +|++|+.||.|++||+++++. +..+.+ |...|.++.
T Consensus 268 dg~i~i~d~~~~~~~---~~~~~~~~--~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 268 SGVITVHNVFSKEQT---IQLPSKFT--CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp TSCEEEEETTTCCEE---EEECCTTS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred CCeEEEEECCCCcee---EEcccccC--CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 999999999876432 333 3454 6799999999999 999999999999999998754 777877 666788885
Q ss_pred EcCCCCcEEEEEeCCCcEEEEe
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|. ++ .++++++.||+|++|.
T Consensus 343 ~~-~~-~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 343 FA-AG-ALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EE-TT-EEEEEETTTEEEEEEE
T ss_pred eC-CC-CEEEEecCCccEEEEe
Confidence 54 55 6999999999998773
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=323.99 Aligned_cols=366 Identities=14% Similarity=0.223 Sum_probs=268.4
Q ss_pred CCCCCCCC-eeeeC----------CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeE
Q psy307 292 DPTDYQGR-SFLHP----------PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRV 360 (1019)
Q Consensus 292 ~~~~~~gr-~~~~~----------~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I 360 (1019)
-.++++|+ .++++ +.|+.|++|+....... +.+..+ +|...|++++|+|+ +.+|++|+.||.|
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v 91 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSL 91 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeE
Confidence 35677887 78888 88999999988643211 123333 58999999999995 7899999999999
Q ss_pred EEEecCC---CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC------eE--E
Q psy307 361 KLWEVYK---ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH------RC--V 429 (1019)
Q Consensus 361 ~IWdl~~---~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~------~~--~ 429 (1019)
++||+.. ...++..+.+|...|.+++|+|++. .+|++|+.||.|++||+.... .. .
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD-------------NVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST-------------TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCC-------------CEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 9999965 2457888999999999999999832 789999999999999996554 22 2
Q ss_pred EEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 430 RTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 430 ~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
..+.+|...|.+++|+|+ +..|++++.|+.|++||+++++++..+..+... ..+.
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------------------------~~~~ 214 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN------------------------SGIK 214 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS------------------------SCCC
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc------------------------cccC
Confidence 234689999999999999 788999999999999999999887776543110 1124
Q ss_pred CcccEEEEcCCC-CEEEEEecCC---eEEEEEccCcccccceeEEe-ccccccceEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy307 509 HSMPAVTSSPNN-KWLACQSMDN---KILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSP-DMSYLISGDADGKCYIW 582 (1019)
Q Consensus 509 ~~i~~v~~spdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IW 582 (1019)
..+.+++|+|++ .++++++.|+ .|++||+++.. .....+. +|. ..|.+++|+| ++++|++|+.||.|++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQ--KGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCS--SCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCcc--CceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 567788888887 6899999998 99999998753 2234555 676 6799999999 99999999999999999
Q ss_pred eCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhc
Q psy307 583 DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICS 662 (1019)
Q Consensus 583 Dl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~ 662 (1019)
|+.+++.+..+.+|.+.|.+++|+|+++.++++++.||.|++|. ............ ...... ...+.
T Consensus 291 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~-~~~~~~~~~~~~-----------~~~~~~-~~~~~ 357 (416)
T 2pm9_A 291 NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT-LQNLTNTLDEQE-----------TETKQQ-ESETD 357 (416)
T ss_dssp CSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE-SCCCCCSSCC-------------------------
T ss_pred eCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE-ccCCCCCccccc-----------cccccc-CCccc
Confidence 99999999999999999999999999867999999999997763 332211111000 000000 00000
Q ss_pred ccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 663 GWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 663 ~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
.|. .+...+ .......... ....-+..+|.+++|||++ +.|+++..|++|+||+.
T Consensus 358 ~~~--~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg--~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 358 FWN--NVSREE----SKEKPSVFHL-QAPTWYGEPSPAAHWAFGG--KLVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTT--EEECBCTTSSCBCCBCC
T ss_pred ccc--cccccc----cccccccccc-cCCccccCCccceEEeeCC--eEEEEeCCCCeEEEEEe
Confidence 000 000000 0000000000 1111256678899999999 88999999999999974
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.6e-32 Score=339.34 Aligned_cols=278 Identities=21% Similarity=0.286 Sum_probs=243.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.++++..|+.|.+|+... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..++.+
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~-~~~~~~ 90 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYET-------QVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNY-NTGEKV 90 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEET-TTCCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCC-------CceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEEC-CCCcEE
Confidence 4678999999999999999998753 4578899999999999999995 889999999999999999 556778
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNF 451 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l 451 (1019)
..+.+|...|++++|+|++ .+|++|+.||.|++||+.........+.+|...|.+++|+| ++..|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~--------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTK--------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp EEEECCSSCEEEEEECSSS--------------SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred EEEecCCCCEEEEEEeCCC--------------CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 8899999999999999999 68999999999999999777788999999999999999999 88899
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC--CCCEEEEEecC
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP--NNKWLACQSMD 529 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp--dg~~Lasgs~D 529 (1019)
++++.||+|++||+.++.....+.. .+...+.+++|+| ++.+|++++.|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~-----------------------------~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTT-----------------------------GQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEEC-----------------------------CCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred EEEeCCCeEEEEECCCCcceeEEec-----------------------------CCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 9999999999999987765444332 2235567788888 89999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
|.|++||+.++ .....+.+|. ..|.+++|+|+|++|++|+.||.|++||+.+++.+..+..|...+.+++|+|++
T Consensus 208 g~i~~~d~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 208 LTIKIWDYQTK---SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp SEEEEEETTTT---EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred CEEEEEECCCC---cEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 99999999876 3456777776 679999999999999999999999999999999999999999999999999998
Q ss_pred CcEEEEEeCCCcEEEEec
Q psy307 610 PSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd 627 (1019)
...+++++.|+.+.+|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp GGGEEEEEETTEEEEEEC
T ss_pred CceEEEEEeCCCEEEEEc
Confidence 655566666777767653
No 35
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-31 Score=333.38 Aligned_cols=313 Identities=23% Similarity=0.328 Sum_probs=241.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----cEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+....+++|++.|++|+|+|+++.+|+|||.||+|+||++... +.+.+.+.+|...|.+++|+|++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---------- 442 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---------- 442 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS----------
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC----------
Confidence 3445789999999999999988899999999999999998543 35667899999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
.+|++|+.||+|+|||+ ..+.+...+.+|...|.+++|+|++++|++|+.|++|++||+...........
T Consensus 443 ----~~l~sgs~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~----- 512 (694)
T 3dm0_A 443 ----QFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG----- 512 (694)
T ss_dssp ----SEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-----
T ss_pred ----CEEEEEeCCCcEEEEEC-CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-----
Confidence 69999999999999999 66788889999999999999999999999999999999999865432211110
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC--CEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN--KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg--~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
...|...|.+++|+|++ ..|++++.|++|++||+.+. .....+.+|. +.|.
T Consensus 513 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~--~~v~ 565 (694)
T 3dm0_A 513 ----------------------GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHT--GYVS 565 (694)
T ss_dssp ----------------------TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCS--SCEE
T ss_pred ----------------------CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCC--CCEE
Confidence 12344567788888876 68999999999999999876 4457788887 7799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++|+|+|++|++|+.||+|+|||+.+++.+..+..+ ..|.+++|+|++ .++++ +.|+.|++ |+............
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~-~~l~~-~~~~~i~i-wd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNR-YWLCA-ATEHGIKI-WDLESKSIVEDLKV 641 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSS-SEEEE-EETTEEEE-EETTTTEEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCC-cEEEE-EcCCCEEE-EECCCCCChhhhcc
Confidence 9999999999999999999999999999998888654 579999999987 45554 55666755 55544333322211
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
....... . ....... ...-+...|.+++|||++ +.|++++.||
T Consensus 642 ~~~~~~~-------~-----------~~~~~~~-----------------~~~~~~~~~~~l~~spdg--~~l~sgs~Dg 684 (694)
T 3dm0_A 642 DLKAEAE-------K-----------ADNSGPA-----------------ATKRKVIYCTSLNWSADG--STLFSGYTDG 684 (694)
T ss_dssp CCC---------------------------------------------------CCCCEEEEEECTTS--SEEEEEETTS
T ss_pred ccccccc-------c-----------ccccccc-----------------cCCceeEEeeeEEEcCCC--CEEEEEcCCC
Confidence 1100000 0 0000000 000112247789999999 7899999999
Q ss_pred chhhHHH
Q psy307 720 NASLEEK 726 (1019)
Q Consensus 720 ~i~lw~~ 726 (1019)
+|++|+.
T Consensus 685 ~i~iW~i 691 (694)
T 3dm0_A 685 VIRVWGI 691 (694)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999973
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-33 Score=319.14 Aligned_cols=251 Identities=16% Similarity=0.148 Sum_probs=202.3
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..|.++|++++|+|+ +.+|++|+.||.|+|||+.... +++..+.+|...|.+++|+|++ ++|
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------~~l 70 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------------NRI 70 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--------------CCE
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--------------CEE
Confidence 34557789999999995 8899999999999999995443 7788899999999999999998 689
Q ss_pred EEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce---EEEEecCCceEEE
Q psy307 409 LSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC---ISRFTSRKVAYCV 483 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~---i~~~~~~~~v~~v 483 (1019)
++|+.||.|++||+.... .....+.+|...|.+++|+|++++|++++.|++|++||+++++. ...+.
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------- 142 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-------- 142 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC--------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee--------
Confidence 999999999999995443 36777889999999999999999999999999999999987652 22222
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc---------------cccceeE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF---------------KLNRKKT 548 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~---------------~~~~~~~ 548 (1019)
.++...+.+++|+|++++|++++.||.|++||+.... .......
T Consensus 143 ---------------------~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T 3dwl_C 143 ---------------------RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201 (377)
T ss_dssp ---------------------SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred ---------------------cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence 2255678889999999999999999999999985321 0122333
Q ss_pred EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 549 FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL----FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 549 l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
+ +|. +.|.+++|+|+|++|++|+.||.|+|||+.+++. +..+.+|...|.+++|+|++ .+|++++.|+ +.+
T Consensus 202 ~-~~~--~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~-~~~ 276 (377)
T 3dwl_C 202 Y-PSG--GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYS-PIL 276 (377)
T ss_dssp C-CCS--SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSS-EEE
T ss_pred c-cCC--ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCc-EEE
Confidence 4 565 7799999999999999999999999999999987 88899999999999999998 5777776555 447
Q ss_pred Eeccc
Q psy307 625 VQDAN 629 (1019)
Q Consensus 625 wwd~~ 629 (1019)
||...
T Consensus 277 ~~~~~ 281 (377)
T 3dwl_C 277 LQGNE 281 (377)
T ss_dssp ECCCC
T ss_pred EEeCC
Confidence 77764
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-31 Score=296.22 Aligned_cols=263 Identities=18% Similarity=0.264 Sum_probs=208.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~ 404 (1019)
+..+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.. ..+++.++.+|..+|.+++|+++ +
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g------------- 67 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG------------- 67 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-------------
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-------------
Confidence 3567899999999999996 88999999999999999954 34678899999999999999864 4
Q ss_pred CcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCce--EEEEe-cCC
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGEC--ISRFT-SRK 478 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~--i~~~~-~~~ 478 (1019)
.+|++|+.|++|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.|++|++||++++.. ...+. +..
T Consensus 68 -~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 68 -TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp -SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred -CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 699999999999999996543 456778899999999999997 88999999999999999987632 22333 335
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc-ccceeEEeccccccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVAGY 557 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~~~ 557 (1019)
.+.+++|+|+..... ......+++++|++|+.|++|++||+.+... ......+.+|. ..
T Consensus 147 ~v~~~~~~p~~~~~~------------------~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~--~~ 206 (297)
T 2pm7_B 147 GVNSASWAPATIEED------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DW 206 (297)
T ss_dssp CEEEEEECCCC------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--SC
T ss_pred ccceEeecCCccccc------------------ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC--Cc
Confidence 567777777532100 0000123468999999999999999986532 22456788887 77
Q ss_pred eEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCc---eeeee--eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 558 ACSLDFSPDM---SYLISGDADGKCYIWDWKTTK---LFKKW--KAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 558 V~~v~fspdg---~~Lasgs~DG~I~IWDl~t~~---~l~~l--~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|.+++|+|++ .+|++|+.||+|+|||+.++. ....+ ..|...|.+++|+|++ .+|++++.||+|++|.
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 282 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEE
Confidence 9999999995 899999999999999998753 12233 5678899999999998 6899999999998773
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=307.41 Aligned_cols=335 Identities=16% Similarity=0.191 Sum_probs=254.2
Q ss_pred eccCCCCeEEEEEcCCCCc-EEEEeeCCCeEEEEec----CCCcE-----EEEEecc----------cCccEeEEEEcCC
Q psy307 331 WEGHTKGISAIRWFPKSAH-LLLSCSMDCRVKLWEV----YKERR-----CVRTYYG----------HRQAVRDICFNNT 390 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~-lLaSgs~Dg~I~IWdl----~~~~~-----~~~~~~g----------h~~~V~~i~fspd 390 (1019)
...|.+.|++++|+|+ +. +|++|+.||.|++|++ ..... ....+.. |...|.+++|+|+
T Consensus 41 ~~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 3456699999999997 56 9999999999999999 55442 3333433 6789999999998
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
+ .+|++|+.||.|++|| ..+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 120 ~--------------~~l~~~~~dg~i~i~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 120 G--------------NSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp S--------------SEEEEEETTSCEEEEE--TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred C--------------CEEEEEeCCCeEEEEe--CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 8 6999999999999999 56778888999999999999999999999999999999999999999
Q ss_pred EEEEecCCc----------------eEEEEEecCCCeeee---------ccCC-CceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 471 ISRFTSRKV----------------AYCVKFHPDEDKQHL---------DIPV-DMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 471 i~~~~~~~~----------------v~~v~~~p~~~~~~~---------~~~~-~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
+..+..+.. +.++.|+|++..... +... ........+...+.+++|+|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 888876543 778888887543322 1111 11223345677899999999999999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTL 604 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~ 604 (1019)
+++.||.|++||+.++ .....+.+|. ..+.+++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE
Confidence 9999999999999876 3446666776 679999999999 999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceE
Q psy307 605 WHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNY 684 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~ 684 (1019)
|+|++ .+|++++.||.|++| +....+.. ...+. ..... .+...... ....
T Consensus 338 ~s~~~-~~l~~~~~dg~i~i~-~~~~~~~~------~~~~~---------~~~~~---~~~~~~~~-~~~~--------- 387 (425)
T 1r5m_A 338 ISQDG-QKYAVAFMDGQVNVY-DLKKLNSK------SRSLY---------GNRDG---ILNPLPIP-LYAS--------- 387 (425)
T ss_dssp ECTTS-SEEEEEETTSCEEEE-ECHHHHC--------------------------------CEECC-EEEE---------
T ss_pred EcCCC-CEEEEEECCCeEEEE-ECCCCccc------eeeee---------ccccc---ccCcccch-hhhh---------
Confidence 99998 699999999999776 33221100 00000 00000 00000000 0000
Q ss_pred EeccccccccCC--ceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 685 ITEKNRNEIKNG--SVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 685 it~~~~~~I~ng--~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
-..|.+ .|.+++|+|++ +.|+++..||.|++|+.
T Consensus 388 ------~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 388 ------YQSSQDNDYIFDLSWNCAG--NKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------ECCTTCCCCEEEEEECTTS--SEEEEEESSSCCEEEEC
T ss_pred ------hcCcccCCceEEEEccCCC--ceEEEEecCceEEEEee
Confidence 012433 89999999998 68889999999999963
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=339.73 Aligned_cols=414 Identities=11% Similarity=0.098 Sum_probs=281.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++++|+.+++++.|+.|++|+.... ..... ..|...|++++|+| +.+|++++.|++|+|||+. .++++
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~-------~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~-~~~~~ 92 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQV-------EVVIK-LEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLY-SQKVL 92 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTC-------EEEEE-CSSCCCEEEEEEET--TTEEEEEETTCEEEEEETT-TCSEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCc-------EEEEE-cCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECC-CCcEE
Confidence 46789999999999999999976431 22333 35888999999999 4599999999999999994 45667
Q ss_pred EEecccCccEeEEEEcCCCCceeE----------------------------------------EEeecCCCCcEEEEEe
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFIS----------------------------------------AIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs----------------------------------------~i~~~p~~~~~L~sgs 412 (1019)
..+. |...|++++|+|++..+++ +++|+|.+...|++|+
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 7775 6789999999999876543 4567777778999999
Q ss_pred CCCcEEEEEccCCCeEEEEEccc------------------cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGH------------------RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H------------------~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.||.| +||+ ..++++..+..| ...|.+++|+|+|++|++++.||+|++||+++++++...
T Consensus 172 ~dg~v-lWd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 172 EYVTL-TYSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp SSCEE-EEET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCCcE-EEEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999 9999 556777777665 578999999999999999999999999999999887642
Q ss_pred e-------------------cCCceEEEEEecC----CCeeee-c-cCC-----Cceeee--------------------
Q psy307 475 T-------------------SRKVAYCVKFHPD----EDKQHL-D-IPV-----DMKYIA-------------------- 504 (1019)
Q Consensus 475 ~-------------------~~~~v~~v~~~p~----~~~~~~-~-~~~-----~~~~i~-------------------- 504 (1019)
. ....+.+++|++. +...++ . ... ....+.
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 1 1236889999653 222222 1 110 111111
Q ss_pred ---------CCCCCcccEEEEcC----------CCCEEEEEecCCeEEEEEccCcccccc--------------------
Q psy307 505 ---------DPTMHSMPAVTSSP----------NNKWLACQSMDNKILIFSALNRFKLNR-------------------- 545 (1019)
Q Consensus 505 ---------~~~~~~i~~v~~sp----------dg~~Lasgs~Dg~I~iwd~~~~~~~~~-------------------- 545 (1019)
..+...+..+.+.+ ++..+++++.||.|++||+.++.....
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~ 409 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMA 409 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEE
Confidence 12345566666654 344788999999999999865421110
Q ss_pred ------------------eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eee----e-----cc
Q psy307 546 ------------------KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF--KKW----K-----AH 596 (1019)
Q Consensus 546 ------------------~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l--~~l----~-----~h 596 (1019)
...+.||. ..+.+++|+|+|++|++|+.||+|++||+.++... ..+ . +|
T Consensus 410 s~~~~~~w~~~~~~~~~~~~~l~G~~--~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 410 ASVPNKLWLGALSAAQNKDYLLKGGV--RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEHHHHHHHHHTTBCCCCSCCCSB--CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEcCHHHHHHHHhcccCCCCcccCCc--CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 00123333 34556788999999999999999999999887532 111 1 78
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeee--------e---------ccccCCceee------------c
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAV--------E---------MEKQVPQLYQ------------F 647 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~--------e---------~~~~v~ql~~------------l 647 (1019)
...|.+++|+|++ .+||+|+.||+|++| +....+... . .......... +
T Consensus 488 ~~~V~svafspdg-~~LAsgs~DgtV~lw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 488 ELAVDKISFAAET-LELAVSIETGDVVLF-KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SCCEEEEEEETTT-TEEEEEETTSCEEEE-EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCceeEEEecCCC-CeEEEEecCcEEEEE-EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 8999999999998 699999999999776 333221100 0 0000000000 0
Q ss_pred ccccccchhhhhhhcccccCCCceeEEEeecCCCceEEecccccc-----------ccCCceEEEEec-----CCc-cHH
Q psy307 648 NQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNE-----------IKNGSVLRLAFS-----ASK-TAD 710 (1019)
Q Consensus 648 ~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~-----------I~ng~Vl~LafS-----Pd~-~a~ 710 (1019)
.....+.. ....+....+++.. ++...+.+....+|....... -|.+.|++|+|| ||+ ..+
T Consensus 566 ~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 00000110 11122222344333 555555555555666444322 356679999999 884 246
Q ss_pred HHHhhcCCCchhhHHH
Q psy307 711 DILSKLSDKNASLEEK 726 (1019)
Q Consensus 711 ~Ilt~~~d~~i~lw~~ 726 (1019)
.|++++.|++|++|+.
T Consensus 644 ~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEecCCcEEEEEE
Confidence 7999999999999985
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.3e-30 Score=287.93 Aligned_cols=302 Identities=13% Similarity=0.126 Sum_probs=246.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~ 370 (1019)
.++++|+.++.+..++.+..|.... ........+|.+.|++++|+|+ +.+|++++ ||.|++||+.... .
T Consensus 16 ~~s~dg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 16 HVTADGQMQPVPFPPDALIGPGIPR-------HARQINTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EECSSSCEEECCCCTTSSSSTTCCS-------EEEEEEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred EECCCCCEEEeecCCCcEeccccCC-------ccccceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCcee
Confidence 4678999998888777666664331 1223344589999999999995 78899998 9999999996432 1
Q ss_pred EEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC
Q psy307 371 CVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd 447 (1019)
.+..+. +|...|.+++|+|++ ++|++++.||.|++||+.... .....+.+|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG--------------CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS--------------SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred eeecccccCCCCcEEEEEEcCCC--------------CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 233333 789999999999988 689999999999999995543 256778899999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCC----------CceeeeCCCCCcccEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPV----------DMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~----------~~~~i~~~~~~~i~~v~~ 516 (1019)
++++++++.||.|++||+++++.+..+.. ...+.+++|+|++...+..... ........+...+.+++|
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~ 232 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY 232 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence 99999999999999999999999988875 4678999999998766553222 222222234567889999
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+|++++|++++.||.|++||+.+.. ...+..|. ..+.+++|+|+|++|++++.||.|++||+.+++.+... .|
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~ 305 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KE 305 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSC----EEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCc--cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cC
Confidence 9999999999999999999998753 23556665 77999999999999999999999999999999887544 57
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 ~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...|.+++|+|++ .++++++.||.|++|
T Consensus 306 ~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 306 SSSVLSCDISVDD-KYIVTGSGDKKATVY 333 (337)
T ss_dssp SSCEEEEEECTTS-CEEEEEETTSCEEEE
T ss_pred CCcEEEEEECCCC-CEEEEecCCCeEEEE
Confidence 8899999999998 699999999999776
No 41
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-31 Score=299.60 Aligned_cols=265 Identities=19% Similarity=0.292 Sum_probs=201.6
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCc
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAH 406 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~ 406 (1019)
.+.+|.+.|++++|+|+ +.+|++|+.|++|+|||+.... .++..+.+|...|.+++|+++ + .
T Consensus 8 ~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~--------------~ 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG--------------N 72 (316)
T ss_dssp ------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS--------------S
T ss_pred ecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC--------------C
Confidence 46799999999999996 8899999999999999996543 357789999999999999863 4 6
Q ss_pred EEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEE---EEe-cCCc
Q psy307 407 LLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECIS---RFT-SRKV 479 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~---~~~-~~~~ 479 (1019)
+|++|+.|++|++||+.... .....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.... .+. +...
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 89999999999999996543 467788999999999999998 7899999999999999998764221 111 1234
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
+.++.|+|+.....+ +.... . ...+++++|++|+.|++|++||+...........+.+|. ..|.
T Consensus 153 v~~~~~~~~~~~~~~--------~~~~~-~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~--~~V~ 216 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSL--------IDHPS-G-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS--DWVR 216 (316)
T ss_dssp BCCCEECCCCCC--------------CC-S-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS--SCEE
T ss_pred cceEEEccccCCccc--------ccccc-c-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC--CceE
Confidence 556666665320000 00000 0 001235789999999999999997543333456678887 7799
Q ss_pred EEEEcCCC----CEEEEEeCCCeEEEEeCCCCc----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 560 SLDFSPDM----SYLISGDADGKCYIWDWKTTK----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 560 ~v~fspdg----~~Lasgs~DG~I~IWDl~t~~----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
+++|+|++ .+|++|+.||+|+|||+.+.. ....+..|.+.|.+++|+|++ .+|++++.||+|++|.
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEE
T ss_pred EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEE
Confidence 99999987 899999999999999997631 234566789999999999998 6899999999998873
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-30 Score=345.65 Aligned_cols=376 Identities=18% Similarity=0.237 Sum_probs=282.4
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ ..+.++..+.+|...|.+++|+|+| .
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~--------------~ 670 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDD--------------S 670 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS--------------S
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCC--------------C
Confidence 34578899999999999996 889999999999999999 5567788999999999999999998 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec--CCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN--TGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCV 483 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp--dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v 483 (1019)
+|++|+.||.|++||+ .+++++..+.+|...|.+++|+| ++..+++|+.|++|++||+++++++..+..+ ..+.++
T Consensus 671 ~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 9999999999999999 56788899999999999999999 4557999999999999999999999888755 678999
Q ss_pred EEecCCCeeeeccCCCceeeeC------------------------CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC
Q psy307 484 KFHPDEDKQHLDIPVDMKYIAD------------------------PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~------------------------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
+|+|++...+.........+++ .....+.+++|+|+|+.+++++ ++.|.+||+.+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~ 828 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT 828 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC
Confidence 9999987665533222222111 1123678899999999999987 79999999987
Q ss_pred cccccceeEE-eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 540 RFKLNRKKTF-EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 540 ~~~~~~~~~l-~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
+... ..+ .+|. ..+.+++|+|++.++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|++ ..+++++.
T Consensus 829 ~~~~---~~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~ 902 (1249)
T 3sfz_A 829 SGLL---AEIHTGHH--STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASD 902 (1249)
T ss_dssp CCEE---EEEECSSS--SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred CCce---eEEcCCCC--CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeC
Confidence 7433 333 3555 679999999999999999999999999999999999999999999999999998 68999999
Q ss_pred CCcEEEEeccceeee---------eeeccccCCceeecc----------cccccchhhhhhhcccccCCCceeEEEeecC
Q psy307 619 DAATAKVQDANIVKI---------AVEMEKQVPQLYQFN----------QTLTLSSIIQEICSGWSLSDSEQYALQFSET 679 (1019)
Q Consensus 619 Dg~I~iwwd~~i~ki---------~~e~~~~v~ql~~l~----------~~~~LSs~~~~~~~~wsls~~e~~al~~sd~ 679 (1019)
||.|++|.-...... ............... .................+++...+++....+
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 999987742211000 000000000000000 0000000001111122233333344444444
Q ss_pred CCceEEeccccccc-----cCCceEEEEecCCccHHHHHhhcCCCchhhHHHHH
Q psy307 680 NNKNYITEKNRNEI-----KNGSVLRLAFSASKTADDILSKLSDKNASLEEKTA 728 (1019)
Q Consensus 680 ~~~~~it~~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~~ 728 (1019)
+...++.......+ |.+.|.+++|+|++ +.+++++.|++|++|+.-.
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSSSBEEEEETTT
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCC
Confidence 44545554444333 68899999999998 7899999999999998533
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-30 Score=293.74 Aligned_cols=315 Identities=19% Similarity=0.298 Sum_probs=242.5
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
.....+.+|.+.|++++|+|+ +.+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------- 86 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFT-------------- 86 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS--------------
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCC--------------
Confidence 345678999999999999995 889999999999999999 5567888999999999999999988
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC-----CeEEEEECCCCceEEEEec--CC
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-----RYLKLWDTESGECISRFTS--RK 478 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-----g~I~lWDl~t~~~i~~~~~--~~ 478 (1019)
++|++++.||.|++||+ ..++++..+. |...|.+++|+|+++++++++.+ +.|++||+..+.....+.. ..
T Consensus 87 ~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDV-SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp SEEEEEETTTEEEEEET-TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CEEEEEeCCCeEEEEEC-CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 68999999999999999 4556666666 88999999999999999999999 9999999876543222111 00
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
.+. ..........+.+++|+|++++|++++.||.|++||+.+.. .....+..|. ..|
T Consensus 165 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~--~~v 221 (369)
T 3zwl_B 165 PIH-------------------KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHE--KSI 221 (369)
T ss_dssp CSE-------------------EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--EEEEEEECCS--SCE
T ss_pred eee-------------------eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--EeEEEEecCC--Cce
Confidence 111 11111122378899999999999999999999999998732 3456677776 679
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|++ .++++++.++.+.+|-.....
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~------- 292 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANE------- 292 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSS-SEEEEEECCC------------------
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCC-------
Confidence 999999999999999999999999999999998887 67789999999998 688888888866443111000
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
....+..|+...+.... . + ..|.+.|.+++|+|++ +.|+++..|
T Consensus 293 ------------------~~~~i~~~d~~~~~~~~-~---------~------~~~~~~v~~~~~s~~~--~~l~s~~~d 336 (369)
T 3zwl_B 293 ------------------GKFEARFYHKIFEEEIG-R---------V------QGHFGPLNTVAISPQG--TSYASGGED 336 (369)
T ss_dssp --------------------CEEEEEETTTCCEEE-E---------E------ECCSSCEEEEEECTTS--SEEEEEETT
T ss_pred ------------------CcceeEEEecCCCcchh-h---------e------ecccCcEEEEEECCCC--CEEEEEcCC
Confidence 00011122222222110 0 0 1367899999999998 789999999
Q ss_pred CchhhHHH
Q psy307 719 KNASLEEK 726 (1019)
Q Consensus 719 ~~i~lw~~ 726 (1019)
|.|++|+.
T Consensus 337 g~v~iw~~ 344 (369)
T 3zwl_B 337 GFIRLHHF 344 (369)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEC
Confidence 99999984
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=321.57 Aligned_cols=281 Identities=11% Similarity=0.045 Sum_probs=211.4
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-----CCcEEEEeeCCCeEEEEecCCCc
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-----SAHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-----~g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
+++++.+++++.|+.|+||+...... ......++.+|.+.|.+++|+|+ ++.+||+|+.||+|+|||+....
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~---~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTL---HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp ------------CEEEEEEEEETTTC---CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred chhhhhhccCCCCceEEEEEccCCCC---CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 57788899999999999998754321 11234567889999999999996 25799999999999999995432
Q ss_pred ----------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccE
Q psy307 370 ----------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 370 ----------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
.+...+.+|...|.+++|++++ .|++|+.||+|++||+.....+...+.+|...|
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---------------~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V 311 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---------------TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYI 311 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSSS---------------EEEEEETTSEEEEEETTBCSSCSEEEECSSSCE
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCCC---------------eEEEEeCCCEEEEEECCCCCCceEEeecccccE
Confidence 1234678898999998888643 799999999999999976656667789999999
Q ss_pred eEE--EEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 440 RDI--CFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 440 ~sl--~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
.+| +|+|++ .+|+|||.|++|+|||+++++++..+..+. ....+.+++|
T Consensus 312 ~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~----------------------------~~~~v~~v~f 363 (524)
T 2j04_B 312 LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF----------------------------RGSNLVPVVY 363 (524)
T ss_dssp EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC----------------------------SCCSCCCEEE
T ss_pred EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc----------------------------ccCcccceEe
Confidence 999 578887 899999999999999998877654433210 1123667889
Q ss_pred cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT---------- 586 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t---------- 586 (1019)
+|+++.+++++.|++|++||++++. ....+.+|. +.|.+++|+|+|++|++|+.||+|+|||+..
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~---~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~ 438 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAF---AVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSS 438 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTT---CCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC----
T ss_pred CCCcCeEEEeCCCCcEEEEECcccc---cceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCc
Confidence 9999999999999999999998863 346677887 7899999999999999999999999998532
Q ss_pred ----------------------------------CceeeeeeccCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEe
Q psy307 587 ----------------------------------TKLFKKWKAHDGVCISTLWHPHE--PSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 587 ----------------------------------~~~l~~l~~h~~~V~sl~~sp~~--~~~l~s~s~Dg~I~iww 626 (1019)
+..+.++.+|.+.|.+++|+|++ ..++++|+.||.|++|.
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 11123345688899999999996 25899999999998874
No 45
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2.5e-30 Score=292.45 Aligned_cols=284 Identities=18% Similarity=0.289 Sum_probs=233.3
Q ss_pred CCccceeeeccCCCCeEEEEEcCCC--CcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 323 LPKTQVHTWEGHTKGISAIRWFPKS--AHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 323 lp~~~i~~l~gH~~~V~~i~fspd~--g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
.|.+.+..+.+|.+.|++++|+|++ +.+|++|+.||.|+|||+.. .......+.+|...|.+++|+|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------- 98 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-------- 98 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--------
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--------
Confidence 4667888999999999999999976 79999999999999999976 444448889999999999999998
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEE--ecCCCEEEEEEcCCeEEEEECCCCceEEEEecC
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF--NNTGTNFISAGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~f--spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
.+|++|+.||.|++||+. .+..+. +.+|...|.+++| ++++.+|++++.||.|++||+++++++..+..+
T Consensus 99 ------~~l~s~~~dg~v~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 99 ------SKVFTASCDKTAKMWDLS-SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp ------SEEEEEETTSEEEEEETT-TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred ------CEEEEEcCCCcEEEEEcC-CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 689999999999999994 444444 6779999999999 899999999999999999999999999999888
Q ss_pred CceEEEEEecCC--------CeeeeccCCC---ceeeeCCCCCcccEEEEcCCCCE----EEEEecCCeEEEEEccCccc
Q psy307 478 KVAYCVKFHPDE--------DKQHLDIPVD---MKYIADPTMHSMPAVTSSPNNKW----LACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 478 ~~v~~v~~~p~~--------~~~~~~~~~~---~~~i~~~~~~~i~~v~~spdg~~----Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
..+.++.+.++. ....++.... .........+.+.++++.+++.. +++++.||.|++|++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 777777766531 1122222211 12222334455667777666655 99999999999999987654
Q ss_pred ccceeEEeccccc----------cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 543 LNRKKTFEGHMVA----------GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 543 ~~~~~~l~gh~~~----------~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
......+.+|... ..|.+++|+|+|++|++|+.||.|+|||+.+++++..+.+|.+.|.+++|+|++ .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 329 (368)
T 3mmy_A 251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NI 329 (368)
T ss_dssp HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SC
T ss_pred cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-Ce
Confidence 4556677777521 169999999999999999999999999999999999999999999999999998 68
Q ss_pred EEEEeCCCcEE
Q psy307 613 VVTAGWDAATA 623 (1019)
Q Consensus 613 l~s~s~Dg~I~ 623 (1019)
|++++.|+..+
T Consensus 330 l~~~s~d~~~~ 340 (368)
T 3mmy_A 330 FAYASSYDWSK 340 (368)
T ss_dssp EEEEECCCSTT
T ss_pred EEEEecccccc
Confidence 99999888543
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=2.4e-30 Score=321.62 Aligned_cols=272 Identities=21% Similarity=0.325 Sum_probs=225.1
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++++.|+.|++|+...... ......+.+.+|.+.|++++|+|+ +.+|+||+.||+|+|||+ ..+.+++.+.
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~--~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~-~~~~~~~~~~ 469 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDK--AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDL-AAGVSTRRFV 469 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTT--CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEEccCCCc--ccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCcceeEEe
Confidence 357899999999999998764322 223456789999999999999996 889999999999999999 5667888999
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---ccccccEeEEEEecCC--CEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFNNTG--TNF 451 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---~~H~~~V~sl~fspdg--~~l 451 (1019)
+|...|.+++|+|++ .+|++|+.|++|++||+.. ....... .+|...|.+++|+|++ ..|
T Consensus 470 ~h~~~v~~~~~s~~~--------------~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 470 GHTKDVLSVAFSLDN--------------RQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp CCSSCEEEEEECTTS--------------SCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred CCCCCEEEEEEeCCC--------------CEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 999999999999998 6899999999999999843 2222222 4789999999999987 579
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++++.|++|++||++++++...+.. |...|.+++|+|+|++|++|+.||.
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~------------------------------h~~~v~~v~~spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAG------------------------------HTGYVSTVAVSPDGSLCASGGKDGV 584 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTSB
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcC------------------------------CCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 9999999999999998887665543 3356778888999999999999999
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccC--------------
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-------------- 597 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-------------- 597 (1019)
|++||+.++.. +..+..+ ..+.+++|+|++.+|++++ ++.|+|||+.+++.+..+..+.
T Consensus 585 i~iwd~~~~~~---~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (694)
T 3dm0_A 585 VLLWDLAEGKK---LYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657 (694)
T ss_dssp CEEEETTTTEE---EECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred EEEEECCCCce---EEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccccc
Confidence 99999988733 2333333 5699999999999888775 5569999999998887765332
Q ss_pred -----CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 598 -----GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 598 -----~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..|++++|+|++ .+|++|+.||+|++|
T Consensus 658 ~~~~~~~~~~l~~spdg-~~l~sgs~Dg~i~iW 689 (694)
T 3dm0_A 658 TKRKVIYCTSLNWSADG-STLFSGYTDGVIRVW 689 (694)
T ss_dssp ---CCCCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CCceeEEeeeEEEcCCC-CEEEEEcCCCeEEEE
Confidence 137899999998 699999999999777
No 47
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=1.7e-30 Score=293.09 Aligned_cols=288 Identities=13% Similarity=0.222 Sum_probs=227.4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p 402 (1019)
...+.+++|.+.|++++|+|++..++++|+. ||.|+|||+...........+|...|.+++|+|++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------- 78 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL---------- 78 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT----------
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC----------
Confidence 4456678999999999999986677888887 999999999655443344458999999999999830
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEE------ecCCCEEEEEEcCCeEEEEECCCCc-eEEEEe
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICF------NNTGTNFISAGYDRYLKLWDTESGE-CISRFT 475 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~f------spdg~~l~S~s~Dg~I~lWDl~t~~-~i~~~~ 475 (1019)
++.+|++|+.||.|++||+......+..+.+|...|.++.| +|+++.|++++.||+|++||++++. .+..+.
T Consensus 79 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 79 -QQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp -TTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred -CCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 12689999999999999996665588889999999999955 6889999999999999999999987 666665
Q ss_pred cC-----CceEEEE----EecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcC---CCCEEEEEecCCeEE
Q psy307 476 SR-----KVAYCVK----FHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSP---NNKWLACQSMDNKIL 533 (1019)
Q Consensus 476 ~~-----~~v~~v~----~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~sp---dg~~Lasgs~Dg~I~ 533 (1019)
.+ ..+.++. |+|++...+... ..........+...+.+++|+| ++.+|++++.||.|+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 42 2677777 667776555422 2222223344567899999999 999999999999999
Q ss_pred EEEccCccccccee--EEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------------------ceee
Q psy307 534 IFSALNRFKLNRKK--TFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKTT-------------------KLFK 591 (1019)
Q Consensus 534 iwd~~~~~~~~~~~--~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t~-------------------~~l~ 591 (1019)
+||+.++....... .+.+|. ..|.+++|+|+++ +|++|+.||.|++||+.++ +.+.
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHK--STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCS--SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCc--CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 99998764433222 334676 7799999999999 8999999999999999754 4677
Q ss_pred eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 592 KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 592 ~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.+.+|.+.|.+++|+|++..++++++.||.|++|.
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 78899999999999999954444899999997773
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.5e-30 Score=297.34 Aligned_cols=307 Identities=11% Similarity=0.133 Sum_probs=249.6
Q ss_pred CCCCCCC-eeeeCCCCCceeeecC----CCCCCcc---CCccceeeec------cCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSD----TPPDRCF---LPKTQVHTWE------GHTKGISAIRWFPKSAHLLLSCSMDC 358 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~----~~~~~~~---lp~~~i~~l~------gH~~~V~~i~fspd~g~lLaSgs~Dg 358 (1019)
.++++|+ .+++++.|+.|++|+. ....... ......+.+. +|.+.|++++|+|+ +.+|++|+.||
T Consensus 52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 130 (425)
T 1r5m_A 52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GNSIVTGVENG 130 (425)
T ss_dssp EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SSEEEEEETTS
T ss_pred EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CCEEEEEeCCC
Confidence 3678899 9999999999999988 4322100 0111122222 37889999999995 88999999999
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
.|++||. .+..+..+.+|...|.+++|+|++ .+|++++.||.|++||+ ..+..+..+..|...
T Consensus 131 ~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 131 ELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG--------------THIISMDVENVTILWNV-ISGTVMQHFELKETG 193 (425)
T ss_dssp CEEEEET--TSCEEEEECCCCSCEEEEEECTTS--------------SEEEEEETTCCEEEEET-TTTEEEEEECCC---
T ss_pred eEEEEeC--CCCeeeeccCCCccEEEEEECCCC--------------CEEEEEecCCeEEEEEC-CCCcEEEEeeccccC
Confidence 9999994 556788899999999999999998 68999999999999999 567778888888777
Q ss_pred ---------------EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCCC---
Q psy307 439 ---------------VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPVD--- 499 (1019)
Q Consensus 439 ---------------V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~~--- 499 (1019)
+.+++|++++ .+++++.||.|++||+++++.+..+.. ...+.+++|+|++..++......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 9999999975 689999999999999999988888764 46789999999987655522211
Q ss_pred --------ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 500 --------MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 500 --------~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.......+...+.+++|+|++ ++++++.||.|++||+.++ .....+..|. ..+.+++|+|+|++|+
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDG--VPIFAGRISQDGQKYA 346 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTT--CCEEEEEECTTSSEEE
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCC--ccEEEEEEcCCCCEEE
Confidence 122334467789999999999 9999999999999999876 3456667776 6799999999999999
Q ss_pred EEeCCCeEEEEeCCCCc--------------------eeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGDADGKCYIWDWKTTK--------------------LFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs~DG~I~IWDl~t~~--------------------~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|+.||.|++||+.+++ ++..+.+|.. .|.+++|+|++ .+|++++.||.|++|
T Consensus 347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVV 421 (425)
T ss_dssp EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEE
T ss_pred EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEE
Confidence 99999999999999988 8899999976 99999999998 599999999999776
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.1e-29 Score=284.57 Aligned_cols=276 Identities=20% Similarity=0.305 Sum_probs=231.3
Q ss_pred CCCC-CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQ-GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~-gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
++++ ++.+++++.|+.|++|+...... ....+..++++|...|++++|+|+ +.+|++|+.||.|++|+. ......
T Consensus 46 ~sp~~~~~l~S~s~D~~i~vWd~~~~~~--~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~-~~~~~~ 121 (340)
T 4aow_A 46 TTPQFPDMILSASRDKTIIMWKLTRDET--NYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDL-TTGTTT 121 (340)
T ss_dssp ECTTCTTEEEEEETTSCEEEEEECCSSS--CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEE
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCCc--ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEee-ccccee
Confidence 4555 68999999999999999765332 234567889999999999999996 889999999999999999 455666
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC--CE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG--TN 450 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg--~~ 450 (1019)
.....+...+..+.+++++ .+|++|+.|+.+++||+...........+|...|.+++|++++ ..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~--------------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 122 RRFVGHTKDVLSVAFSSDN--------------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp EEEECCSSCEEEEEECTTS--------------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred eeecCCCCceeEEEEeecC--------------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 7777888889999998888 6899999999999999977777777788999999999999875 46
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
+++++.|++|++||+++++++..+.. +...|.+++|+|++++|++|+.||
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~------------------------------h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIG------------------------------HTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC------------------------------CSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEcCCCEEEEEECCCCceeeEecC------------------------------CCCcEEEEEECCCCCEEEEEeCCC
Confidence 88999999999999999887766643 234577788899999999999999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee---------eccCCCEE
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW---------KAHDGVCI 601 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l---------~~h~~~V~ 601 (1019)
.|++||+.+.. .+..+.++ ..+.++.|+|++.++ +++.||.|+|||++++..+..+ .+|...|+
T Consensus 238 ~i~iwd~~~~~---~~~~~~~~---~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 238 QAMLWDLNEGK---HLYTLDGG---DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp EEEEEETTTTE---EEEEEECS---SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred eEEEEEeccCc---eeeeecCC---ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 99999998763 34555554 569999999998755 5567999999999988776654 36888999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 602 STLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 602 sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++|+|++ .+|++|+.||+|++|
T Consensus 311 ~l~~s~dg-~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 311 SLAWSADG-QTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEE
T ss_pred EEEECCCC-CEEEEEeCCCEEEEE
Confidence 99999998 699999999999776
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-29 Score=287.19 Aligned_cols=272 Identities=16% Similarity=0.230 Sum_probs=233.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ +.+|++++.||.|++||+ ..++++
T Consensus 39 ~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~-~~~~~~ 109 (369)
T 3zwl_B 39 KYNKEGDLLFSCSKDSSASVWYSLN-------GERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDV-SNGQCV 109 (369)
T ss_dssp EECTTSCEEEEEESSSCEEEEETTT-------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEE
T ss_pred EEcCCCCEEEEEeCCCEEEEEeCCC-------chhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEE
Confidence 3577899999999999999998653 3568899999999999999995 889999999999999999 455666
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-----CcEEEEEccCCC----------eEEEEEccccc
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-----CRVKLWEVYKEH----------RCVRTYYGHRQ 437 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-----g~I~IWDl~~~~----------~~~~~l~~H~~ 437 (1019)
..+. |...|.+++|+|++ .+|++++.+ |.|++||+.... .....+..|.+
T Consensus 110 ~~~~-~~~~v~~~~~~~~~--------------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 110 ATWK-SPVPVKRVEFSPCG--------------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EEEE-CSSCEEEEEECTTS--------------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EEee-cCCCeEEEEEccCC--------------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 6666 88899999999998 688999998 999999996543 23445566766
Q ss_pred --cEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 438 --AVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 438 --~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
.+.+++|+|+++.|++++.||.|++||+++ +..+..+.. +...+.++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------~~~~v~~~ 224 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL------------------------------HEKSISDM 224 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC------------------------------CSSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec------------------------------CCCceeEE
Confidence 999999999999999999999999999998 565555543 23457778
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC--------------eEE
Q psy307 515 TSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG--------------KCY 580 (1019)
Q Consensus 515 ~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG--------------~I~ 580 (1019)
+|+|++++|++++.||.|++||+.++. ....+. +. ..+.+++|+|+++++++++.++ .++
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTLQ---VLKKYE-TD--CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC---EEEEEE-CS--SCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred EECCCCCEEEEecCCceEEEEECCCCc---eeeeec-CC--CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 888999999999999999999998763 334444 22 6799999999999999999988 899
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++|
T Consensus 299 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLH 342 (369)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred EEecCCCcchhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEE
Confidence 99999999999999999999999999988 699999999999776
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.1e-31 Score=305.83 Aligned_cols=295 Identities=12% Similarity=0.121 Sum_probs=233.2
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC--CCcE
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY--KERR 370 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~--~~~~ 370 (1019)
+.+ +|+.+++++.|+.|++|+........ ..+....+ +|.+.|++++|+|+ +.+|++|+.||.|++||+. ..++
T Consensus 71 ~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~ 147 (437)
T 3gre_A 71 VSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTY-DCSSTVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQES 147 (437)
T ss_dssp EECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEE-ECSSCEEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETT
T ss_pred ECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeec-cCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCc
Confidence 456 89999999999999999875411110 11223333 59999999999995 8899999999999999984 2445
Q ss_pred EEEEecccCccEeEEEEcCC-CCceeEEEee-cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEec
Q psy307 371 CVRTYYGHRQAVRDICFNNT-GTNFISAIRW-FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFNN 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd-g~~~vs~i~~-~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fsp 446 (1019)
+.....+| .|..+.|+++ ....+.++.+ ...++.+|++|+.||.|++||+ ...+++..+.+ |.+.|.+++|+|
T Consensus 148 ~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 148 EVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI-RTLERLQIIENSPRHGAVSSICIDE 224 (437)
T ss_dssp EEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET-TTCCEEEEEECCGGGCCEEEEEECT
T ss_pred eeeccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeeEEEccCCCCCceEEEEECC
Confidence 56666666 7888888874 2233444443 2334579999999999999999 56677888877 899999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA 524 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La 524 (1019)
++++|++|+.||+|++||+++++++..+. +...+.+++|+|. ++|++.+|+
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------~s~~~~~l~ 277 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF---------------------------YGKNSVIVV 277 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT---------------------------TCTTEEEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc---------------------------cCCCccEEE
Confidence 99999999999999999999999988774 3445666666553 356788999
Q ss_pred EEecCCeEEEEEccCcccccceeEEeccc------------------------cccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 525 CQSMDNKILIFSALNRFKLNRKKTFEGHM------------------------VAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 525 sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~------------------------~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
+|+.||.|++||+.++. ....+.+|. ....|.+++|+ ++++|++|+.||.|+
T Consensus 278 s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGH---CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EESTTEEEEEEETTTTE---EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEcCCCcEEEEEcCCCc---EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 99999999999998763 234444332 23568899999 789999999999999
Q ss_pred EEeCCCCceeeeeec-------------------------------------cCCCEEEEEEcCC-CCcEEEEEeCCCcE
Q psy307 581 IWDWKTTKLFKKWKA-------------------------------------HDGVCISTLWHPH-EPSKVVTAGWDAAT 622 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~-------------------------------------h~~~V~sl~~sp~-~~~~l~s~s~Dg~I 622 (1019)
+||+.+++.+..+.+ |...|++++|+++ +..+|++|+.||.|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 999999988777765 8889999999998 33699999999999
Q ss_pred EEE
Q psy307 623 AKV 625 (1019)
Q Consensus 623 ~iw 625 (1019)
++|
T Consensus 434 ~iw 436 (437)
T 3gre_A 434 GIF 436 (437)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=1.7e-30 Score=290.33 Aligned_cols=262 Identities=19% Similarity=0.311 Sum_probs=218.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcC--CCCceeEEEeecC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNN--TGTNFISAIRWFP 402 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fsp--dg~~~vs~i~~~p 402 (1019)
...+.||.+.|++++|+|+ +.+|++|+.||.|+|||+.... .....+.+|...|.+++|+| ++
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~----------- 71 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG----------- 71 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-----------
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-----------
Confidence 3467899999999999995 8899999999999999995433 56778899999999999998 46
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC--------eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEE
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH--------RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~--------~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+.
T Consensus 72 ---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 72 ---RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp ---SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred ---CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 699999999999999996543 678889999999999999999 9999999999999999999887654
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccceeEE
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
.+.....+..+.+ ....+...+.+++|+|+ +.++++++.++.+.+|+...+ .......+
T Consensus 149 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (351)
T 3f3f_A 149 SWTLTSEMKVLSI-----------------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKL 210 (351)
T ss_dssp CCEEEEEEESCSC-----------------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEEC
T ss_pred ccccccccccccc-----------------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeec
Confidence 4332211111111 12235567889999997 999999999999987776654 33345667
Q ss_pred eccccccceEEEEEcCCC----CEEEEEeCCCeEEEEeCCCC--------------------------------------
Q psy307 550 EGHMVAGYACSLDFSPDM----SYLISGDADGKCYIWDWKTT-------------------------------------- 587 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg----~~Lasgs~DG~I~IWDl~t~-------------------------------------- 587 (1019)
.+|. ..|.+++|+|++ ++|++|+.||.|++||+.++
T Consensus 211 ~~h~--~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 211 PGHK--SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCCC--SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred CCCC--cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 7776 779999999998 89999999999999999875
Q ss_pred --------ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 --------KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 --------~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..+.+|.+.|++++|+|++ .+|++++.||.|++|
T Consensus 289 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 289 ELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333 (351)
T ss_dssp --CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEE
T ss_pred eecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEE
Confidence 6677888999999999999998 699999999999776
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=5.7e-30 Score=290.88 Aligned_cols=294 Identities=13% Similarity=0.150 Sum_probs=227.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCV 372 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~ 372 (1019)
++++|+.+++++.|+.|++|+..... .+.+..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.... ...
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 89 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPT 89 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEETTE-----EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCc-----EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeee
Confidence 56789999999999999999875321 1268889999999999999995 8899999999999999995433 223
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+..... ......+|...|.+++|+|+++
T Consensus 90 ~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 90 LVILRINRAARCVRWAPNE--------------KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EECCCCSSCEEEEEECTTS--------------SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEeecCCCceeEEEECCCC--------------CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 3457899999999999998 6899999999999999966542 3344477999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
+|++++.||.|++||++........... .|... ............+...+.+++|+|++++|++++.|
T Consensus 156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAYIKEVEERPAPT------PWGSK------MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EEEEEETTSCEEEEECCCTTTSCCCCCB------TTBSC------CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEEEcCCCCEEEEEccccccccccccc------ccccc------cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 9999999999999997532210000000 00000 00000111122455678889999999999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cce------------------
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT--TKL------------------ 589 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t--~~~------------------ 589 (1019)
|.|++||+.++ ..+..+.+|. ..+.+++|+|++.+|++| .||.|++||+.+ ++.
T Consensus 224 ~~i~i~d~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 224 STVCLADADKK---MAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp TEEEEEEGGGT---TEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred CEEEEEECCCC---ceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 99999999877 3456777776 679999999999999888 899999999987 421
Q ss_pred --------------e------eee-eccCCCEEEEEEcCCCC---cEEEEEeCCCcEEEE
Q psy307 590 --------------F------KKW-KAHDGVCISTLWHPHEP---SKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 --------------l------~~l-~~h~~~V~sl~~sp~~~---~~l~s~s~Dg~I~iw 625 (1019)
. ..+ .+|.+.|++++|++.++ .+|+|||.||.|++|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEE
T ss_pred hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEE
Confidence 0 333 48999999999886654 699999999999776
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=8.4e-31 Score=301.07 Aligned_cols=323 Identities=12% Similarity=0.167 Sum_probs=243.0
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-----EEEEEecccCccEeEEEEcCC----CCceeE
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-----RCVRTYYGHRQAVRDICFNNT----GTNFIS 396 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-----~~~~~~~gh~~~V~~i~fspd----g~~~vs 396 (1019)
....++.+|.+.|++++|+| .+|++|+.||.|+|||+.... .++..+.+|...|.+++|+|+ +..
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~--- 80 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE--- 80 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE---
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc---
Confidence 45678899999999999988 599999999999999995543 257788899999999999987 400
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCe----EEEEEccc-----cccEeEEEEe----cCCCE-EEEEEcCCeEEE
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR----CVRTYYGH-----RQAVRDICFN----NTGTN-FISAGYDRYLKL 462 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~l~~H-----~~~V~sl~fs----pdg~~-l~S~s~Dg~I~l 462 (1019)
..+|++++.||.|++||+..... ....+..| ...|.+++|+ |+++. |++++.||.|++
T Consensus 81 --------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 81 --------LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp --------EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred --------ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 04899999999999999954432 27788888 5999999999 99999 999999999999
Q ss_pred EECCC------CceEE-----EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 463 WDTES------GECIS-----RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 463 WDl~t------~~~i~-----~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
||+++ ++.+. .+... ......+...+.+++|+|++ +|++++.||.
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGT-----------------------VESPMTPSQFATSVDISERG-LIATGFNNGT 208 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEE-----------------------ECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred EeCCccccccccceeeccCcceeeee-----------------------eccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence 99987 44322 11100 00113456778999999999 9999999999
Q ss_pred EEEEEccCcccccceeEEec---c---ccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeec-------
Q psy307 532 ILIFSALNRFKLNRKKTFEG---H---MVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKA------- 595 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~g---h---~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~------- 595 (1019)
|++||+.+. .....+.+ | . ..+.+++|+|++++|++|+.| |.|++||+.+++.+..+.+
T Consensus 209 i~i~d~~~~---~~~~~~~~~~~h~~~~--~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 209 VQISELSTL---RPLYNFESQHSMINNS--NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EEEEETTTT---EEEEEEECCC---CCC--CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred EEEEECCCC---ceeEEEeccccccccC--CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence 999999876 34466666 6 5 679999999999999999999 9999999999999999998
Q ss_pred ------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCC
Q psy307 596 ------HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDS 669 (1019)
Q Consensus 596 ------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~ 669 (1019)
|...|.+++|+|++ .+|++++.||.|++| +....+............ .. .
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~----------~~------------~ 339 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFW-DVKTKERITTLNMHCDDI----------EI------------E 339 (397)
T ss_dssp --CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEE-ETTTTEEEEEEECCGGGC----------SS------------G
T ss_pred cccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEE-EcCCCceeEEEecccCcc----------cc------------h
Confidence 99999999999998 699999999999765 443322221111000000 00 0
Q ss_pred ceeEEEeecCCCceEEeccccccccCCceEEEEecCCc--------cHHHHHhhcCCCchhhHHH
Q psy307 670 EQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASK--------TADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 670 e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~--------~a~~Ilt~~~d~~i~lw~~ 726 (1019)
+. ...+. ......|.++|.+++|+|++ +.+.|+++..|+.|++|+.
T Consensus 340 ~~----~~~g~-------~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 340 ED----ILAVD-------EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp GG----CCCBC-------TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred hh----hhccc-------cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 00 00000 00112468899999999996 2246999999999999973
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=311.07 Aligned_cols=351 Identities=9% Similarity=0.072 Sum_probs=243.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee-ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC---C
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW-EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK---E 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l-~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~---~ 368 (1019)
.+.+.|+.++++. .|+.. .+.+.++ .+|.+.|++++|+|.++.+|++|+.||+|+|||+.. .
T Consensus 34 ~f~~~~~~~~~~~------~w~~~--------g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~ 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR--------GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG 99 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC--------CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred hcCCccccccccc------ccccc--------ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence 3566677666654 36432 4677888 999999999999993388999999999999999843 2
Q ss_pred c--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc--CCCeEEEEEcc----------
Q psy307 369 R--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY--KEHRCVRTYYG---------- 434 (1019)
Q Consensus 369 ~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~--~~~~~~~~l~~---------- 434 (1019)
. .+...+ +|...|.+++|+|++ .+|++|+.||.|++||+. ..+.....+.+
T Consensus 100 ~~~~~~~~~-~h~~~v~~~~~~~~~--------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 100 EVYSSSLTY-DCSSTVTQITMIPNF--------------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp CCCSCSEEE-ECSSCEEEEEECTTS--------------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred cccceeeec-cCCCCEEEEEEeCCC--------------CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 1 122233 599999999999988 699999999999999994 22333332222
Q ss_pred --ccccEeEEE--EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 435 --HRQAVRDIC--FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 435 --H~~~V~sl~--fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
+...+.++. +++++.+|++++.|++|++||+++++++..+... .+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------------------------~h~~~ 216 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS----------------------------PRHGA 216 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC----------------------------GGGCC
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC----------------------------CCCCc
Confidence 455677776 5578999999999999999999999888777641 12345
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-ccccccceEEEEE----cCCCCEEEEEeCCCeEEEEeCC
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDF----SPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~f----spdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|.+++|+|++++|++|+.||.|++||++.+ .....+. +|. ..|.+++| +|++.+|++|+.||.|+|||+.
T Consensus 217 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 217 VSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 777888899999999999999999999876 3345554 454 56999955 4578899999999999999999
Q ss_pred CCceeeeeecc--------------------------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccc
Q psy307 586 TTKLFKKWKAH--------------------------DGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEK 639 (1019)
Q Consensus 586 t~~~l~~l~~h--------------------------~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~ 639 (1019)
+++.+..+.+| ...|.+++|+ ++ .+|++|+.||.|++| +....+......+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~w-d~~~~~~~~~~~~ 368 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMF-SLNELSSSKAVIS 368 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEE-ETTCGGGCEEEEC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEE-ECCCcccceEEec
Confidence 99988777644 4557888888 45 699999999999665 4443332222222
Q ss_pred cCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCC
Q psy307 640 QVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDK 719 (1019)
Q Consensus 640 ~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~ 719 (1019)
+......+... .+.....+.+...+.... ........|.+.|++++|+|+.....|+++..||
T Consensus 369 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG 431 (437)
T 3gre_A 369 PSRFSDVFIPT--------------QVTANLTMLLRKMKRTST---HSVDDSLYHHDIINSISTCEVDETPLLVACDNSG 431 (437)
T ss_dssp C--CCCEEEEE--------------EEETTEEEEEEECC----------------CCCEEEEEEEESSSSEEEEEEETTS
T ss_pred ccccCceEEEE--------------EeecceEEEEEecccccc---cccCcccccccceeeEeeeccCCceEEEEEcCCc
Confidence 21111110000 001111111111000000 0001112378999999999994447899999999
Q ss_pred chhhHH
Q psy307 720 NASLEE 725 (1019)
Q Consensus 720 ~i~lw~ 725 (1019)
.|+||+
T Consensus 432 ~I~iw~ 437 (437)
T 3gre_A 432 LIGIFQ 437 (437)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999994
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=278.47 Aligned_cols=272 Identities=17% Similarity=0.234 Sum_probs=231.0
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCC
Q psy307 324 PKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 324 p~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
+.+.++++.+|.+.|++++| |+ +.+|++|+.||.|++||+ ........+..|...|.+++|+|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~------------ 71 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEK------------ 71 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTT------------
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCC------------
Confidence 45778899999999999999 74 788999999999999999 5667788889999999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccCC--CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec-CCce
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS-RKVA 480 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v 480 (1019)
.+|++|+.||.|++|++... ......+.+|...|.+++| +++.+++++.|+.|++|| .++.+..+.. ...+
T Consensus 72 --~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 72 --ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp --TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred --CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCce
Confidence 79999999999999999654 3667888999999999999 578999999999999999 6666666664 4678
Q ss_pred EEEEEec-CCCeeee----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE
Q psy307 481 YCVKFHP-DEDKQHL----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 481 ~~v~~~p-~~~~~~~----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
.++.+.| ++...+. +...........+...+.+++++|++. +++++.||.|++||+.++ .....+
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~ 221 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTY 221 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhh
Confidence 8999988 5554443 211222223334778899999999998 999999999999999876 445677
Q ss_pred eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 550 EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+|. +.|.+++|+|+| .|++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +++++.||.|++|
T Consensus 222 ~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw 292 (313)
T 3odt_A 222 EGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIF 292 (313)
T ss_dssp ECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEE
T ss_pred hcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEE
Confidence 7787 779999999999 588999999999999999999999999999999999999984 7789999999776
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-31 Score=317.34 Aligned_cols=317 Identities=10% Similarity=0.053 Sum_probs=215.1
Q ss_pred EEEeeCCCeEEEEecCCCcE---EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-
Q psy307 351 LLSCSMDCRVKLWEVYKERR---CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH- 426 (1019)
Q Consensus 351 LaSgs~Dg~I~IWdl~~~~~---~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~- 426 (1019)
|++|+.|++|+|||+..... ...++.+|.+.|.+++|+|++. +.+ ++.+|++|+.||+|+|||+....
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~-~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCH-------APH-LVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCC-------CSS-SSCEEEEEETTSCEEEEECCCCSS
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCC-------CCC-CCceEEEEecCCeEEEEEcCCCcc
Confidence 44466889999999854331 1244677888999999999731 111 23699999999999999995442
Q ss_pred ---------eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeeecc
Q psy307 427 ---------RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 427 ---------~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
.+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ...+.
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~--------------------- 305 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ--------------------- 305 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE---------------------
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee---------------------
Confidence 1234678999999999999864 899999999999999987532 22222
Q ss_pred CCCceeeeCCCCCcccEE--EEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 497 PVDMKYIADPTMHSMPAV--TSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v--~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.|...|.++ +++|+| .+|++++.|++|+|||+++.. ....+.+|...+.|.+++|+|+++.++++
T Consensus 306 ---------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~---~~~~~~~~~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 306 ---------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA---TTKTTVSRFRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp ---------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH---HHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred ---------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC---cccccccccccCcccceEeCCCcCeEEEe
Confidence 234556666 467787 899999999999999998763 33456666533457889999999999999
Q ss_pred eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeeccccccc
Q psy307 574 DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTL 653 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~L 653 (1019)
+.|++|++||++++.++.++.+|.+.|++++|+|++ .+|++||.||+|++| +... +........ + .......+
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lw-d~~~-~~~~~~~~~--~--~~~~~~~v 446 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIIT-NAAR-RLLHGIKNS--S--ATQKSLRL 446 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECC-BSCS-STTTCC----------CCCCEE
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEE-echH-hhccccccC--c--cceeeeEE
Confidence 999999999999999989999999999999999998 589999999999775 4321 111000000 0 00000000
Q ss_pred chhhhhhhcccccCCCceeEEEeecCCCceEEe--ccccccc--cCCceEEEEecCCcc-HHHHHhhcCCCchhhHH
Q psy307 654 SSIIQEICSGWSLSDSEQYALQFSETNNKNYIT--EKNRNEI--KNGSVLRLAFSASKT-ADDILSKLSDKNASLEE 725 (1019)
Q Consensus 654 Ss~~~~~~~~wsls~~e~~al~~sd~~~~~~it--~~~~~~I--~ng~Vl~LafSPd~~-a~~Ilt~~~d~~i~lw~ 725 (1019)
-.|.+++..... ...++.....+. ......+ |.+.|.+++|+|++. ...+++|..+|.|+||+
T Consensus 447 --------~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 447 --------WKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --------EECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred --------EEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 012333222221 222221111111 1111112 578999999999974 35688888899999997
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=6.8e-30 Score=292.92 Aligned_cols=272 Identities=13% Similarity=0.093 Sum_probs=220.7
Q ss_pred CCCCCC-CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQG-RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~g-r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++| +.+++++.|+.|++|+...... .....+.+|.+.|++++|+|+++.+|++|+.||.|++||+.. ..
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~ 152 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDVQNK-----TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SV 152 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTSTTC-----EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CE
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCCccc-----ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--Cc
Confidence 356778 8999999999999998874321 223334589999999999996689999999999999999953 44
Q ss_pred EEEecc---cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 372 VRTYYG---HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 372 ~~~~~g---h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+..+.. |...|.+++|+|++ .+|++|+.||.|++||+ .+..+..+.+|...|.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~i~d~--~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSR--------------QMLATGDSTGRLLLLGL--DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTT--------------TEEEEEETTSEEEEEET--TSCEEEEEECSSSCEEEEEECSSC
T ss_pred eEEEeccCCCCCCeEEEEECCCC--------------CEEEEECCCCCEEEEEC--CCCEEEEeccCCCcEEEEEECCCC
Confidence 555544 44889999999988 69999999999999998 467888899999999999999999
Q ss_pred C-EEEEEEcCCeEEEEECCC----CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCE
Q psy307 449 T-NFISAGYDRYLKLWDTES----GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKW 522 (1019)
Q Consensus 449 ~-~l~S~s~Dg~I~lWDl~t----~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~ 522 (1019)
+ .|++++.|++|++||+++ +.++..+. +...+.+++|+| ++.+
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------------------~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-------------------------------HEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-------------------------------CSSCEEEEEECTTTSCE
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEec-------------------------------CCCceEEEEEcCCCCCE
Confidence 9 899999999999999987 44444333 334567778888 8999
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEecccc---------------ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGHMV---------------AGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~---------------~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++++.|+.|++||+.+.... ..+.+|.. .+.+..++|+|+|++ +|+.||.|+|||+.++
T Consensus 266 l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 266 LLTTDQRNEIRVYSSYDWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp EEEEESSSEEEEEETTBTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred EEEEcCCCcEEEEECCCCccc---cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 999999999999999876433 33433321 134555777888877 8889999999999999
Q ss_pred ceeeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 KLFKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 ~~l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..+.+ |.+.+..++|+|++ .+|++++ ||.|++|
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIW 378 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEEEEE
T ss_pred ceeeeecCCCCCceEEEEEEecCc-cEEEEec-CCcEEEE
Confidence 99999987 55778888999998 5888887 9999776
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=5.4e-30 Score=291.07 Aligned_cols=252 Identities=16% Similarity=0.145 Sum_probs=208.2
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..|.++|++++|+|+ +.+|++|+.||.|++||+.... .++..+.+|...|.+++|+|++ .+|
T Consensus 3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS--------------NRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT--------------TEE
T ss_pred eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC--------------CEE
Confidence 34569999999999996 8899999999999999994432 2788899999999999999988 699
Q ss_pred EEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 409 LSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++++.||.|++||+.... .....+..|...|.+++|+|++++|++++.|+.|++||++.+......
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------- 134 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------- 134 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------
Confidence 999999999999994443 223345789999999999999999999999999999999876532111
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc---------------ccccceeEEecc
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR---------------FKLNRKKTFEGH 552 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~---------------~~~~~~~~l~gh 552 (1019)
......+...+.+++|+|++++|++++.||.|++||+... ........+.+|
T Consensus 135 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (372)
T 1k8k_C 135 -------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS 201 (372)
T ss_dssp -------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred -------------eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence 1112234567888999999999999999999999996421 011344556666
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+++++ .||.|++|.
T Consensus 202 ~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~ 271 (372)
T 1k8k_C 202 C--GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFT 271 (372)
T ss_dssp S--SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEE
T ss_pred C--CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEE
Confidence 5 779999999999999999999999999999999999999999999999999987 455555 999997763
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.5e-30 Score=295.90 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=231.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC---CC---cEEEEeeCCCeEEEEecCCCcEE-
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK---SA---HLLLSCSMDCRVKLWEVYKERRC- 371 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd---~g---~lLaSgs~Dg~I~IWdl~~~~~~- 371 (1019)
+.+++++.|+.|++|+..... ...+...+..+.+|...|++++|+|+ ++ .+|++|+.||.|++||+.. ...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~-~~~~ 104 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLD-NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR-EDET 104 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCT-TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE-CTTT
T ss_pred CeEEEEcCCCEEEEEECCCcc-cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC-Cccc
Confidence 789999999999999987543 12334578899999999999999995 27 8999999999999999943 333
Q ss_pred ----EEEeccc-----CccEeEEEEc----CCCCceeEEEeecCCCCcE-EEEEeCCCcEEEEEccCC-----CeEEE--
Q psy307 372 ----VRTYYGH-----RQAVRDICFN----NTGTNFISAIRWFPKSAHL-LLSCSMDCRVKLWEVYKE-----HRCVR-- 430 (1019)
Q Consensus 372 ----~~~~~gh-----~~~V~~i~fs----pdg~~~vs~i~~~p~~~~~-L~sgs~Dg~I~IWDl~~~-----~~~~~-- 430 (1019)
+..+.+| ...|.+++|+ |++ .+ |++|+.||.|++||+... ...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 105 KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL--------------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CCEEEEEECCSCTTGGGSCEEEEEEECCC------------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred ccccceeecccccccCCCcEEEEEEeeccCCCC--------------ceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 7778888 5899999999 887 57 999999999999999650 22222
Q ss_pred ---EE-------ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCc
Q psy307 431 ---TY-------YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 431 ---~l-------~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~ 500 (1019)
.+ ..|...|.+++|+|++ .|++++.|+.|++||+++++++..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------- 226 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ----------------------- 226 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC-----------------------
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc-----------------------
Confidence 55 4589999999999999 9999999999999999998887766540
Q ss_pred eeeeCCC---CCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEec-------------cccccceEEE
Q psy307 501 KYIADPT---MHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEG-------------HMVAGYACSL 561 (1019)
Q Consensus 501 ~~i~~~~---~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~g-------------h~~~~~V~~v 561 (1019)
..+ ...+.+++|+|++++|++++.| |.|++||+.++ .....+.+ |. ..|.++
T Consensus 227 ----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~ 297 (397)
T 1sq9_A 227 ----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHS--SWVMSL 297 (397)
T ss_dssp ----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBS--SCEEEE
T ss_pred ----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccC--CcEEEE
Confidence 002 3557778888999999999999 99999999876 34466666 65 779999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------cc---------------CCCEEEEEEcCCCC---------c
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK------AH---------------DGVCISTLWHPHEP---------S 611 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~------~h---------------~~~V~sl~~sp~~~---------~ 611 (1019)
+|+|++++|++|+.||.|+|||+.+++.+..+. +| ...|.+++|+|++. .
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 377 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 377 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccc
Confidence 999999999999999999999999999999999 88 89999999999973 5
Q ss_pred EEEEEeCCCcEEEE
Q psy307 612 KVVTAGWDAATAKV 625 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iw 625 (1019)
+|++++.||.|++|
T Consensus 378 ~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 378 SLCCVCLDRSIRWF 391 (397)
T ss_dssp EEEEEETTTEEEEE
T ss_pred eEEEecCCCcEEEE
Confidence 89999999999766
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.4e-30 Score=294.53 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=196.1
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe--cccCccEeEEEEcC-CCCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY--YGHRQAVRDICFNN-TGTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~--~gh~~~V~~i~fsp-dg~~~vs~i~~~p 402 (1019)
+...++.+|.+.|++++|+|++..+|++|+.||.|+|||+... .....+ .+|...|.+++|+| ++
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~----------- 131 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNT----------- 131 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETTEE-----------
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCCC-----------
Confidence 4567889999999999999975489999999999999999543 333444 47999999999998 44
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV 479 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~ 479 (1019)
.+|++++.|+.|++||+.. .....+.. |...|.+++|+|++++|++++.|+.|++||+ +++++..+..
T Consensus 132 ---~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~--- 202 (383)
T 3ei3_B 132 ---NQLFVSSIRGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL--- 202 (383)
T ss_dssp ---EEEEEEETTTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC---
T ss_pred ---CEEEEEeCCCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc---
Confidence 7999999999999999953 44555544 4588999999999999999999999999999 4555555443
Q ss_pred eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccc-cceeEEeccccccc
Q psy307 480 AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVAGY 557 (1019)
Q Consensus 480 v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~ 557 (1019)
+...|.+++|+|+++ +|++++.|+.|++||+.+.... .....+ +|. ..
T Consensus 203 ---------------------------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~--~~ 252 (383)
T 3ei3_B 203 ---------------------------HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE--KP 252 (383)
T ss_dssp ---------------------------SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS--SC
T ss_pred ---------------------------CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC--Cc
Confidence 335567788888888 8999999999999999874321 223333 565 77
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeeeeccC-----------------CCEEEEEEcCCCCcEEEEEeCC
Q psy307 558 ACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLFKKWKAHD-----------------GVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 558 V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~-----------------~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
|.+++|+| +|++|++++.||.|++||+.+++.+..+.+|. +.+..++|+|++. + +++.|
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d 329 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDK 329 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCC
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCC
Confidence 99999999 99999999999999999999998877777653 3444566666663 3 77788
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
|.|++|
T Consensus 330 ~~i~iw 335 (383)
T 3ei3_B 330 RTIDIY 335 (383)
T ss_dssp CCEEEE
T ss_pred CeEEEE
Confidence 888665
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.6e-31 Score=299.73 Aligned_cols=296 Identities=13% Similarity=0.103 Sum_probs=220.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~ 370 (1019)
.++++|+.+++++.|+.|++|+..... .+.+.++.+|.+.|++++|+|+ +.+|++|+.||.|++||+.... .
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGNG-----WKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETTE-----EEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCC
T ss_pred EECCCCCEEEEecCCCEEEEEEccCCc-----eEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCcee
Confidence 467789999999999999999876321 1567789999999999999996 7899999999999999995433 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEcc-ccccEeEEEEecC
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYG-HRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~-H~~~V~sl~fspd 447 (1019)
....+.+|...|.+++|+|++ .+|++|+.|+.|++||+..... +...+.+ |...|.+++|+|+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNE--------------DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTS--------------SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred eeeEecccCCceEEEEECCCC--------------CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 567788999999999999998 6899999999999999955443 4667777 9999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC-ceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 448 GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD-MKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 448 g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~-~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+++|++++.|++|++||++.+......... +.+.. .+.. ..... .+...+.+++|+|++++|+++
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~----~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEAS---------VWGSR----LPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSC---------SSCSC----CCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCcccc---------ccccc----cchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence 999999999999999998755422111100 00000 0000 01111 566779999999999999999
Q ss_pred ecCCeEEEEEccCcccc-cceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ee-------------
Q psy307 527 SMDNKILIFSALNRFKL-NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK--LF------------- 590 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~--~l------------- 590 (1019)
+.||.|++||+.++... ..+..+.+|. ..|.+++|+|+|++|++|+.++.+ +|+..... ..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 99999999999887431 1156677776 679999999999999999877766 66654211 00
Q ss_pred ---------------------eee----------------eccCCCEEEEEEcCCCCc---EEEEEeCCCcEEEE
Q psy307 591 ---------------------KKW----------------KAHDGVCISTLWHPHEPS---KVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ---------------------~~l----------------~~h~~~V~sl~~sp~~~~---~l~s~s~Dg~I~iw 625 (1019)
..+ ..|.+.|+++++.+.++. .++|||.||.|++|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iW 375 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLW 375 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEe
Confidence 001 139999999998776544 69999999999877
No 63
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=8.8e-30 Score=321.37 Aligned_cols=254 Identities=19% Similarity=0.301 Sum_probs=219.1
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+..+++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..+..+..+.+|..+|.+++|+|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~-------------- 67 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARK-------------- 67 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGG--------------
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCC--------------
Confidence 456789999999999999996 889999999999999999 5567888999999999999999998
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~ 484 (1019)
.+|++|+.||.|++||+ ..+..+..+.+|.+.|.+++|+|++++|++++.||+|++||+.++ .+...+..
T Consensus 68 ~~l~~~~~dg~i~vw~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------- 138 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------- 138 (814)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC--------
T ss_pred CEEEEEeCCCeEEEEEC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC--------
Confidence 68999999999999999 567788889999999999999999999999999999999999876 44443332
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
+...+.+++|+| ++..|++++.||.|++||+.++.. ...+..+. ...+.+++|
T Consensus 139 ----------------------~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~-~~~v~~~~~ 192 (814)
T 3mkq_A 139 ----------------------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQ-ERGVNYVDY 192 (814)
T ss_dssp ----------------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCC-TTCCCEEEE
T ss_pred ----------------------CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCC-CCCEEEEEE
Confidence 334567777888 788999999999999999977633 33444332 255889999
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 564 SP--DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 564 sp--dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .++++++.||.|++| +....+
T Consensus 193 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vw-d~~~~~ 261 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW-NSSTYK 261 (814)
T ss_dssp CCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE-ETTTCS
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEE-ECCCCc
Confidence 99 99999999999999999999999999999999999999999998 599999999999776 444333
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.9e-29 Score=285.30 Aligned_cols=280 Identities=16% Similarity=0.212 Sum_probs=226.3
Q ss_pred eeeccCCCCeEEEEEcCC---CCcEEEEeeCCCeEEEEecCCCcEEEEEecc-----cCccEeEEEEcCCCCceeEEEee
Q psy307 329 HTWEGHTKGISAIRWFPK---SAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-----HRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 329 ~~l~gH~~~V~~i~fspd---~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-----h~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
....+|.+.|++++|+|+ +...+++++.++.|++||+.. ...+..+.. |...|.+++|+|++.
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 82 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN-------- 82 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence 345699999999999984 456777777788999999953 334444443 557799999988841
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEE----e
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRF----T 475 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~----~ 475 (1019)
.++.+|++|+.||.|++||+ ..++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++.+..+ .
T Consensus 83 --~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 83 --TSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp --TCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred --CCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 11369999999999999999 56677888999999999999999 8999999999999999999999999888 3
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeee---------------------------------------CCCCCcccEEEE
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIA---------------------------------------DPTMHSMPAVTS 516 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~---------------------------------------~~~~~~i~~v~~ 516 (1019)
....+.+++|+|++..++.........++ ..+...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 55789999999988766552222111111 126778999999
Q ss_pred cCCCCEEEEEecCCeEEEEEccCccc-----------ccceeEEeccccccceEEEEEcCC--CCEEEEEeCCCeEEEEe
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFK-----------LNRKKTFEGHMVAGYACSLDFSPD--MSYLISGDADGKCYIWD 583 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~-----------~~~~~~l~gh~~~~~V~~v~fspd--g~~Lasgs~DG~I~IWD 583 (1019)
+ +++|++++.||.|++||+.+... ......+.+|. ..|.+++|+|+ |++|++|+.||.|++||
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 8 77999999999999999976532 12356667776 66889999999 99999999999999999
Q ss_pred CCCCce----eeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 584 WKTTKL----FKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 584 l~t~~~----l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+++. ...+.+| .+.|.+++|+|++ .+|++++.||.|++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRW 362 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEE
Confidence 999864 3477777 7899999999988 699999999999776
No 65
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=2.2e-29 Score=285.10 Aligned_cols=270 Identities=19% Similarity=0.288 Sum_probs=214.7
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.+|+.+++++.|+.|++|+............+..++.+|...|++++|+|+ +.+|++|+.||+|+|||+ ..++++..+
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~~~~~~ 114 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGTTYKRF 114 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSCEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCcEEEEE
Confidence 389999999999999999876543322234567889999999999999995 889999999999999999 556778899
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecCC----
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNTG---- 448 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspdg---- 448 (1019)
.+|...|.+++|+|++ .+|++|+.|++|++||+. ........ +|...|.+++|+|++
T Consensus 115 ~~h~~~v~~v~~sp~~--------------~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDN--------------RQILSAGAEREIKLWNIL--GECKFSSAEKENHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp ECCCSCEEEEEECSST--------------TEEEEEETTSCEEEEESS--SCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred cCCCCcEEEEEECCCC--------------CEEEEEcCCCEEEEEecc--CCceeeeecccCCCceeeeeeecccccccc
Confidence 9999999999999998 689999999999999995 23333333 789999999999987
Q ss_pred ------CEEEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCeeeeccCCCceeeeC-----------CCCCc
Q psy307 449 ------TNFISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDKQHLDIPVDMKYIAD-----------PTMHS 510 (1019)
Q Consensus 449 ------~~l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~~~~~~~~~~~~i~~-----------~~~~~ 510 (1019)
.+|++++.|++|++||. .++....+.. ...+.+++|+|++..++.........+++ .+.+.
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred ccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 78999999999999994 4566666654 46799999999988765533222222222 13456
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-----------ccccccceEEEEEcCCCCEEEEEeCCCeE
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-----------GHMVAGYACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-----------gh~~~~~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
+.+++|+|++.+++++ .|+.|++|++.+..... ...+. +|. ..+.+++|+|+|++|++|+.||.|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~sg~~Dg~v 333 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKN--PQCTSLAWNALGKKLFAGFTDGVI 333 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSC--CCEEEEEECSSSCCEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCC--CceEEEEECCCCCeEEEecCCceE
Confidence 8999999999887755 58889999997653321 11222 444 669999999999999999999999
Q ss_pred EEEeCCCCc
Q psy307 580 YIWDWKTTK 588 (1019)
Q Consensus 580 ~IWDl~t~~ 588 (1019)
++|++.++.
T Consensus 334 ~~w~~~~g~ 342 (343)
T 2xzm_R 334 RTFSFETSA 342 (343)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEccC
Confidence 999987653
No 66
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=4.3e-30 Score=295.44 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=211.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++++.|+.+++|+................+.||.+.|.+++|+|+++..|++|+.|++|++||+. .+.++
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~ 193 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRI 193 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEE
Confidence 46789999999999999999998653322223345678999999999999999878889999999999999994 45556
Q ss_pred EEe-----cccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 373 RTY-----YGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 373 ~~~-----~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
..+ .+|...|.+++|++ ++ .+|++|+.||+|++||++.....+..+.+|.+.|.+++|+|
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~~~~~--------------~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 194 SIFGSEFPSGHTADVLSLSINSLNA--------------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp EEECCCSSSSCCSCEEEEEECSSSC--------------CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT
T ss_pred EEeecccCCCCccCeEEEEeecCCC--------------CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec
Confidence 655 67888999888876 44 79999999999999999777788899999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
++++|++|+.||+|++||++++.++..+..+... ...+...+.+++|+|+|++|++|
T Consensus 260 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR-----------------------NDNELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-----------------------SCCSSCSCSEEEECSSSSEEEEE
T ss_pred CCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-----------------------cccccCceEEEEECCCCCEEEEE
Confidence 9999999999999999999999887766542100 01123457899999999999999
Q ss_pred ecCCeEEEEEccCcccccceeEE----eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 527 SMDNKILIFSALNRFKLNRKKTF----EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l----~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
+.||.|++||+..+... ..+ .+|. +.|.+++|+|||++|++|+.||+|+||++...+
T Consensus 317 ~~dg~i~vwd~~~~~~~---~~~~~~~~~h~--~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMV---LNLGTLQNSHE--GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEETTTCCEE---EEECCSCSSCC--CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCEEEEECCCCceE---EEEecccCCCC--CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999876332 333 4565 779999999999999999999999999987654
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=7.3e-29 Score=288.97 Aligned_cols=269 Identities=23% Similarity=0.330 Sum_probs=221.7
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCcccee--eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVH--TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~--~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
+..++.+ .|+.|+||+.... ++++ .+.+|...|++|+|+|+ +.+|++|+.||+|+|||+ ..+++++.+
T Consensus 116 ~n~lAvg-ld~tV~lWd~~tg-------~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~ 185 (420)
T 4gga_A 116 GNVLAVA-LDNSVYLWSASSG-------DILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNM 185 (420)
T ss_dssp TSEEEEE-ETTEEEEEETTTC-------CEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEE
T ss_pred CCEEEEE-eCCEEEEEECCCC-------CEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEE
Confidence 3455555 6999999987632 3333 45678889999999996 889999999999999999 567889999
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+|...|.++.+++ .+|++|+.|+.+++||.......+..+.+|...+..+.|+|+++++++++
T Consensus 186 ~~h~~~v~~~s~~~----------------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 186 TSHSARVGSLSWNS----------------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp CCCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCCceEEEeeCC----------------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee
Confidence 99999999887753 58999999999999999888888999999999999999999999999999
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEE--EecCCeE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLAC--QSMDNKI 532 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Las--gs~Dg~I 532 (1019)
.|+.|++||..+++.... .......+...|.+++|+|.+. .+++ |+.|++|
T Consensus 250 ~D~~v~i~~~~~~~~~~~--------------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWV--------------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp TTSCEEEEESSCCSSCSC--------------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ccccceEEeeccccccce--------------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 999999999987653110 0011223445566777777654 4444 4579999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
++||+.++. ....+..+ ..++++.|+|+++.+++++ .||.|+|||+.+++++.++.+|.+.|++++|+|++
T Consensus 304 ~iwd~~t~~---~~~~~~~~---~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg- 376 (420)
T 4gga_A 304 RIWNVCSGA---CLSAVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG- 376 (420)
T ss_dssp EEEETTTTE---EEEEEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-
T ss_pred EEEeCCccc---cceeeccc---cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-
Confidence 999999873 34555555 5688999999999988765 78999999999999999999999999999999998
Q ss_pred cEEEEEeCCCcEEEE
Q psy307 611 SKVVTAGWDAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~Dg~I~iw 625 (1019)
.+|+|||.||+|++|
T Consensus 377 ~~l~S~s~D~tvriW 391 (420)
T 4gga_A 377 ATVASAAADETLRLW 391 (420)
T ss_dssp SCEEEEETTTEEEEE
T ss_pred CEEEEEecCCeEEEE
Confidence 689999999999877
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.6e-29 Score=290.73 Aligned_cols=269 Identities=22% Similarity=0.295 Sum_probs=225.0
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+..+..+++++.|+.|.+|+.... +....+.. |.+.|++++|+|+ +.+|++|+.||.|++||+ ..++.+.
T Consensus 100 ~~s~~~l~~~~~d~~v~lw~~~~~-------~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~ 170 (401)
T 4aez_A 100 DWSNLNVVAVALERNVYVWNADSG-------SVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLR 170 (401)
T ss_dssp EECTTSEEEEEETTEEEEEETTTC-------CEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEE
T ss_pred eecCCCEEEEECCCeEEEeeCCCC-------cEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEE
Confidence 334566888999999999987642 33445544 8999999999995 889999999999999999 5567788
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+.+|...|.+++|++ ++|++|+.||.|++||++........+.+|.+.|.+++|+|++++|++
T Consensus 171 ~~~~~~~~v~~~~~~~----------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 171 TMAGHQARVGCLSWNR----------------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp EECCCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EecCCCCceEEEEECC----------------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 8999999999999843 589999999999999997788889999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEe--cCC
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQS--MDN 530 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs--~Dg 530 (1019)
++.|+.|++||+++++++..+.. +...+.+++|+|++ .++++++ .|+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTN------------------------------HNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECC------------------------------CSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred EeCCCeEEEccCCCCCccEEecC------------------------------CcceEEEEEECCCCCCEEEEecCCCCC
Confidence 99999999999999887665543 23456777788866 4555554 799
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceee--eeeccCCCEEEEEEc
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS--GDADGKCYIWDWKTTKLFK--KWKAHDGVCISTLWH 606 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las--gs~DG~I~IWDl~t~~~l~--~l~~h~~~V~sl~~s 606 (1019)
.|++||+.++. ....+..+ ..+.+++|+|+|+++++ |+.||.|+|||+.+++... .+.+|.+.|.+++|+
T Consensus 285 ~i~i~d~~~~~---~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 285 QIHFWNAATGA---RVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp EEEEEETTTCC---EEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred EEEEEECCCCC---EEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 99999998773 33445433 56999999999999999 5589999999999866544 467899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|++++.||.|++|
T Consensus 359 ~dg-~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 359 PDG-RILSTAASDENLKFW 376 (401)
T ss_dssp TTS-SEEEEECTTSEEEEE
T ss_pred CCC-CEEEEEeCCCcEEEE
Confidence 998 699999999999766
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.1e-30 Score=306.00 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=192.5
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC-cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~-~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
......+|...|+||+|+|.++.+||+|+.||.|+|||+... ......+.+|.+.|++|+|+|.+.
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~------------- 177 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT------------- 177 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-------------
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-------------
Confidence 345677899999999999977889999999999999999643 344556789999999999987431
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.+|++|+.||+|++||+. +......... +...+.+++|+|++.+|++|+.||+|++||++.. .+..+
T Consensus 178 ~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~--------- 246 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL--------- 246 (435)
T ss_dssp TEEEEECSSSCEEEEETT-SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS---------
T ss_pred CEEEEEeCCCEEEEeecc-CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE---------
Confidence 799999999999999994 3333333333 3456889999999999999999999999998643 22222
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..|...|.+++|+|++. +|++|+.|+.|++||++............+|. ..|.+++
T Consensus 247 ---------------------~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~--~~v~~~~ 303 (435)
T 4e54_B 247 ---------------------RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR--HPVNAAC 303 (435)
T ss_dssp ---------------------BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCS--SCEEECC
T ss_pred ---------------------ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecc--cccccee
Confidence 22445677788888875 68899999999999998764443344445665 6799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC------CEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG------VCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~------~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
|+|+|++|++|+.||.|+|||+.++.....+..|.. .+..+.|+|++...+++.+.|+.+
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred ECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 999999999999999999999999988887776643 345677899875333333445544
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=284.86 Aligned_cols=265 Identities=19% Similarity=0.263 Sum_probs=209.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFP 402 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p 402 (1019)
+++.++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+.. ....+..+.+|...|.+++|+++ +
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----------- 69 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG----------- 69 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-----------
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-----------
Confidence 456789999999999999996 88999999999999999953 55677889999999999999876 5
Q ss_pred CCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceE--EEE-ec
Q psy307 403 KSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECI--SRF-TS 476 (1019)
Q Consensus 403 ~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i--~~~-~~ 476 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++... ..+ .+
T Consensus 70 ---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 ---TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp ---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred ---CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 799999999999999995443 377888899999999999999 999999999999999999887432 222 22
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-cceeEEeccccc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVA 555 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~ 555 (1019)
...+.+++|+|..... .......+++.+|++++.||.|++||++..... .....+.+|.
T Consensus 147 ~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~-- 206 (379)
T 3jrp_A 147 AIGVNSASWAPATIEE------------------DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS-- 206 (379)
T ss_dssp TTCEEEEEECCCC----------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--
T ss_pred CCceEEEEEcCccccc------------------cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc--
Confidence 3445555555432100 000111347999999999999999999865332 2345677776
Q ss_pred cceEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 556 GYACSLDFSPD---MSYLISGDADGKCYIWDWKTTK-----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 556 ~~V~~v~fspd---g~~Lasgs~DG~I~IWDl~t~~-----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
..|.+++|+|+ +.+|++|+.||.|+|||+.++. .+.....|...|.+++|+|++ .+|++++.||.|++|.
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK 284 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence 77999999999 8999999999999999999864 222334588899999999998 5899999999997763
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=8.7e-30 Score=291.51 Aligned_cols=282 Identities=10% Similarity=0.047 Sum_probs=216.8
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCC-------eEEEEecCCCcE---------EEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDC-------RVKLWEVYKERR---------CVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg-------~I~IWdl~~~~~---------~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
-+|+|++|+|+ +++|++||.|. .|++|++..... ....+.+|...|.+++++.+. ++.+
T Consensus 15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~--~~~g-- 89 (365)
T 4h5i_A 15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI--ILVG-- 89 (365)
T ss_dssp SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE--EEEE--
T ss_pred CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE--EEEE--
Confidence 48999999996 89999987643 599999854321 123467888888888776432 1111
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--------ccccccEeEEEEecCCCEEEEEE--cCCeEEEEECCCCc
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--------YGHRQAVRDICFNNTGTNFISAG--YDRYLKLWDTESGE 469 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--------~~H~~~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~ 469 (1019)
..++...|++|+.|+.+++|++......+... ..+...+.+++|+|||+++++++ .|++|+|||+++++
T Consensus 90 -~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 90 -CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp -CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred -ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 11223455566778999999986554333322 22445689999999999977554 78999999999999
Q ss_pred eEEEEecCCceEEEEEecCCCeeeeccCCCce------------eeeCCCCCcccEEEEcCCCCEEEEEecCC----eEE
Q psy307 470 CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK------------YIADPTMHSMPAVTSSPNNKWLACQSMDN----KIL 533 (1019)
Q Consensus 470 ~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~------------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg----~I~ 533 (1019)
++..+.++..+.+++|+|++...+........ .....+...+.+++|+|+++++++++.|+ .++
T Consensus 169 ~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 169 EKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred EEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 99999988899999999999876653322211 12234556788999999999999999887 688
Q ss_pred EEEccCccc-ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-eccCCCEEEEEEcCCCCc
Q psy307 534 IFSALNRFK-LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-KAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 534 iwd~~~~~~-~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-~~h~~~V~sl~~sp~~~~ 611 (1019)
+|++..... ......+.+|. ..|++++|+|||++||+|+.||+|+|||+.+++++.++ .+|.+.|++++|+|++ .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~ 325 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRF--KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-T 325 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSC--SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-C
T ss_pred ecccccceecceeeeeecCCC--CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-C
Confidence 898875422 22234566776 67999999999999999999999999999999999885 7999999999999998 6
Q ss_pred EEEEEeCCCcEEEEe
Q psy307 612 KVVTAGWDAATAKVQ 626 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iww 626 (1019)
+|+|||.|++|++|.
T Consensus 326 ~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 326 YVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEEETTSEEEEEE
T ss_pred EEEEEeCCCeEEEEE
Confidence 999999999998873
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=7.5e-29 Score=291.93 Aligned_cols=266 Identities=18% Similarity=0.298 Sum_probs=213.9
Q ss_pred cceeeeccCCCCe-EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 326 TQVHTWEGHTKGI-SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 326 ~~i~~l~gH~~~V-~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
....++.+|.+.| +++.+. +.+|++|+.||+|++||+ ..++++..+.+|...|.+++|++++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~------------- 174 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG------------- 174 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-------------
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-------------
Confidence 3456899999885 666664 469999999999999999 5667889999999999999998875
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEe--cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs--pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
+|++|+.||+|++||+ ..+.++..+.+|.+.|.+++|+ +++.++++++.|++|++||++++..............
T Consensus 175 --~l~s~s~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 175 --ILVSGSTDRTVRVWDI-KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp --EEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred --EEEEEeCCCCEEEEEC-CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 7999999999999999 6677889999999999999999 4778999999999999999998876544433322222
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
+.+.|..... .......+...+ .+++++++++++++.||.|++||+.++ .....+.+|. ..|.+++
T Consensus 252 ~~~~~~~~~~-------~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~--~~v~~~~ 317 (464)
T 3v7d_B 252 VFHTPEENPY-------FVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHT--DRIYSTI 317 (464)
T ss_dssp EESCGGGCTT-------EEEEECCCSSCE--EEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEEEEE
T ss_pred EeeccCCCeE-------EEEEccCccceE--EEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCC--CCEEEEE
Confidence 3333322111 111222333334 445788999999999999999999876 4457777887 7799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
|+|++++|++|+.||.|++||+.+++++..+.+|...|.+++|++ .++++++.||+|++|.-.
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECC
Confidence 999999999999999999999999999999999999999999983 589999999999776443
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=8.6e-29 Score=301.04 Aligned_cols=299 Identities=16% Similarity=0.277 Sum_probs=244.1
Q ss_pred CCCCCCCeeeeCCCC----CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHD----VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D----~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.+++++.+ +.|.+|+. .+.+..+.+|.+.|++++|+|++..+|++|+.||.|++||+ ..
T Consensus 123 ~~s~~~~~l~~~~~~~~~~~~v~~~d~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~ 192 (615)
T 1pgu_A 123 SWDFEGRRLCVVGEGRDNFGVFISWDS---------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG-PP 192 (615)
T ss_dssp EECTTSSEEEEEECCSSCSEEEEETTT---------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET-TT
T ss_pred EEeCCCCEEEEeccCCCCccEEEEEEC---------CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC-CC
Confidence 356889999999887 68888873 24678899999999999999975559999999999999998 66
Q ss_pred cEEEEEecccCc---cEeEEEEcCC-CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-c---cccccEe
Q psy307 369 RRCVRTYYGHRQ---AVRDICFNNT-GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-Y---GHRQAVR 440 (1019)
Q Consensus 369 ~~~~~~~~gh~~---~V~~i~fspd-g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~---~H~~~V~ 440 (1019)
.+++..+.+|.. .|.+++|+|+ + .+|++++.||.|++||+ ..++.+..+ . +|...|.
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSG--------------EFVITVGSDRKISCFDG-KSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTC--------------CEEEEEETTCCEEEEET-TTCCEEEECCBTTBCCCSCEE
T ss_pred cceeeeecccCCCCceEEEEEECCCCC--------------CEEEEEeCCCeEEEEEC-CCCCEeEEecccccccCCceE
Confidence 788889999999 9999999998 7 69999999999999999 556677777 6 8999999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-----Cc------------------------------------
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-----KV------------------------------------ 479 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-----~~------------------------------------ 479 (1019)
+++|+ ++++|++++.|+.|++||+++++++..+..+ ..
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 99999 9999999999999999999988877665543 11
Q ss_pred -----eE---------------------------------EEEEecCCCeeee----------ccC--------------
Q psy307 480 -----AY---------------------------------CVKFHPDEDKQHL----------DIP-------------- 497 (1019)
Q Consensus 480 -----v~---------------------------------~v~~~p~~~~~~~----------~~~-------------- 497 (1019)
+. +++|.+ +..++. +..
T Consensus 337 ~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s 415 (615)
T 1pgu_A 337 GHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 415 (615)
T ss_dssp CCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred CCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECC-CcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence 11 222211 111000 000
Q ss_pred --------------------------------------------------CCce------------eeeCCCCCcccEEE
Q psy307 498 --------------------------------------------------VDMK------------YIADPTMHSMPAVT 515 (1019)
Q Consensus 498 --------------------------------------------------~~~~------------~i~~~~~~~i~~v~ 515 (1019)
.... .....+...+.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 495 (615)
T 1pgu_A 416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS 495 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence 0000 12234566788999
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-cccccceEEEEEcC----------CCCEEEEEeCCCeEEEEeC
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSP----------DMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fsp----------dg~~Lasgs~DG~I~IWDl 584 (1019)
|+|++++|++++.||.|++||+.++. ....+.+ |. ..|++++|+| ++++|++|+.||.|++||+
T Consensus 496 ~s~~g~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 496 ISPSETYIAAGDVMGKILLYDLQSRE---VKTSRWAFRT--SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTE---EEECCSCCCS--SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred ECCCCCEEEEcCCCCeEEEeeCCCCc---ceeEeecCCC--CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999999999999999999998773 3455555 65 7799999999 9999999999999999999
Q ss_pred CCC-ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 585 KTT-KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 585 ~t~-~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++ +++..+.+|.+.|.+++|+|++ . |++++.||+|++|
T Consensus 571 ~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 571 KRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRW 610 (615)
T ss_dssp SCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEE
T ss_pred CCCceechhhhcCccceEEEEEcCCC-C-eEEecCCceEEEE
Confidence 998 7899999999999999999998 5 9999999999776
No 74
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=295.74 Aligned_cols=296 Identities=16% Similarity=0.244 Sum_probs=225.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCC----ccCCccceeeeccCC------------CCeEEEEEcCCCC-cEEEEee
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDR----CFLPKTQVHTWEGHT------------KGISAIRWFPKSA-HLLLSCS 355 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~----~~lp~~~i~~l~gH~------------~~V~~i~fspd~g-~lLaSgs 355 (1019)
.++++|+.+++++.|+.|++|+...... .....+.+..+.+|. +.|++++|+|++. .+|++|+
T Consensus 35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s 114 (447)
T 3dw8_B 35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST 114 (447)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence 3567899999999999999999875431 112334688899998 8999999999733 7899999
Q ss_pred CCCeEEEEecCCCcE--------------------------------------EEEE-ecccCccEeEEEEcCCCCceeE
Q psy307 356 MDCRVKLWEVYKERR--------------------------------------CVRT-YYGHRQAVRDICFNNTGTNFIS 396 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~--------------------------------------~~~~-~~gh~~~V~~i~fspdg~~~vs 396 (1019)
.||.|++||+..... +.+. ..+|...|.+++|+|++
T Consensus 115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----- 189 (447)
T 3dw8_B 115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY----- 189 (447)
T ss_dssp CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-----
T ss_pred CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-----
Confidence 999999999843221 1112 36899999999999988
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-------EccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCC
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-------YYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESG 468 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-------l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~ 468 (1019)
.+|++| .||.|++||+......+.. +.+|...|.+++|+|++ +.|++|+.||+|++||++++
T Consensus 190 ---------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 190 ---------ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp ---------SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred ---------CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 688888 7999999999655655553 56899999999999998 99999999999999999988
Q ss_pred ce----EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccC-cccc
Q psy307 469 EC----ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALN-RFKL 543 (1019)
Q Consensus 469 ~~----i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~-~~~~ 543 (1019)
+. +..+..+..... ......+...+.+++|+|+|++|++++. +.|++||+.. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--- 317 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSN------------------RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--- 317 (447)
T ss_dssp SSSCTTCEEECCC-----------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---
T ss_pred ccccceeeEeccCCCccc------------------cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---
Confidence 75 455544321100 0011123347889999999999999998 9999999986 4
Q ss_pred cceeEEeccccccc-------------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---------------
Q psy307 544 NRKKTFEGHMVAGY-------------ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA--------------- 595 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~-------------V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~--------------- 595 (1019)
..+..+.+|..... +..++|+|+|++|++|+.||.|+|||+.+++.+. +.+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 396 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRK 396 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCcc
Confidence 34466666642111 3348999999999999999999999999987653 222
Q ss_pred ------------------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 596 ------------------HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 596 ------------------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
+...|.+++|+|++ .+|++++.++ +++|++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKE-NIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSCCCTTCEEGGGCCTTSCCCEEEECSSS-SEEEEECSSC-EEEEECC
T ss_pred ccccCCcccccccccccccCCceeEEEECCCC-CEEEEEecce-eeeeccc
Confidence 23468899999998 5888887775 6677654
No 75
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=7.2e-29 Score=276.17 Aligned_cols=289 Identities=21% Similarity=0.330 Sum_probs=223.9
Q ss_pred cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 369 RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
.....++.+|...|++++|+|++ ++|++|+.||.|++|++ ..+.....+.+|...|.+++|+|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~--------------~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNG--------------EWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ceeEEEEcccCCcEEEEEECCCC--------------CEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCC
Confidence 45667889999999999999998 69999999999999999 5667788899999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
++|++++.|+.|++||+++++++..+..+ ...+.+++|+|++++|++|+.
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~l~s~~~ 127 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGH------------------------------SNYVFCCNFNPQSNLIVSGSF 127 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECC------------------------------SSCEEEEEECSSSSEEEEEET
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999887766543 244667788889999999999
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-ccCCCEEEEEEcC
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-AHDGVCISTLWHP 607 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp 607 (1019)
||.|++||+.++ .....+..|. ..|.+++|+|+|++|++|+.||.|++||+.+++.+..+. .|...+..++|+|
T Consensus 128 d~~i~iwd~~~~---~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
T 4ery_A 128 DESVRIWDVKTG---KCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202 (312)
T ss_dssp TSCEEEEETTTC---CEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred CCcEEEEECCCC---EEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence 999999999876 3456777776 679999999999999999999999999999999887764 4567899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEec
Q psy307 608 HEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITE 687 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~ 687 (1019)
++ .++++++.||.|++| +....+......++....... ...+.. .+..+++..+.++...+|..
T Consensus 203 ~~-~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 203 NG-KYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYCI-------------FANFSV-TGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp TS-SEEEEEETTTEEEEE-ETTTTEEEEEECSSCCSSSCC-------------CEEEEC-SSSCEEEECCTTSCEEEEET
T ss_pred CC-CEEEEEcCCCeEEEE-ECCCCcEEEEEEecCCceEEE-------------EEEEEe-CCCcEEEEECCCCEEEEEEC
Confidence 98 699999999999665 554444433333222111000 000111 12223333333344445554
Q ss_pred cccccc-----cCCceEEEEecCCccHHHHHhhc--CCCchhhHH
Q psy307 688 KNRNEI-----KNGSVLRLAFSASKTADDILSKL--SDKNASLEE 725 (1019)
Q Consensus 688 ~~~~~I-----~ng~Vl~LafSPd~~a~~Ilt~~--~d~~i~lw~ 725 (1019)
.....+ |.+.|.+++|+|++ +.+++++ .|++|++|+
T Consensus 267 ~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVISTACHPTE--NIIASAALENDKTIKLWK 309 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEE
T ss_pred CCchhhhhhhccCCcEEEEeecCcC--CceEEEEccCCccEEEec
Confidence 444333 68899999999998 6677665 699999996
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.1e-29 Score=279.38 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=196.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+++.++.+|.+.|++++|+|+ .+.+|+||+.||+|+|||+.... .
T Consensus 16 ~~s~~g~~las~s~D~~v~iw~~~~~-----~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 16 VMDYYGKRMATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp EECTTSSEEEEEETTSCEEEEEBCSS-----CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred EECCCCCEEEEEeCCCEEEEEecCCC-----CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 46788999999999999999987632 12467899999999999999864 47899999999999999996432 4
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe-EEEEEccccccEeEEEEecC
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNT 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspd 447 (1019)
.+..+.+|...|.+++|+|+ + .+|++|+.||+|++||+..... ....+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~h~~~v~~v~~~p~~~g--------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 91 QIAVHAVHSASVNSVQWAPHEYG--------------PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEeecCCCceeEEEeCcCCCC--------------cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 56678899999999999987 5 6899999999999999965532 24667899999999999997
Q ss_pred -------------CCEEEEEEcCCeEEEEECCCCc----eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 448 -------------GTNFISAGYDRYLKLWDTESGE----CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 448 -------------g~~l~S~s~Dg~I~lWDl~t~~----~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
+++|++|+.|++|++||++++. +...+. .|...
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~------------------------------~H~~~ 206 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE------------------------------GHSDW 206 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC------------------------------CCSSC
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec------------------------------CCCCc
Confidence 5789999999999999998765 222232 34456
Q ss_pred ccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccceeEE--eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy307 511 MPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTF--EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 511 i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l--~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~ 585 (1019)
|.+++|+|+ +.+|++++.|++|++||+...........+ .+|. ..|.+++|+|+|++|++|+.||+|+||+..
T Consensus 207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP--DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS--SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCC--CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 777777777 489999999999999999764221112223 2343 679999999999999999999999999976
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.3e-28 Score=288.63 Aligned_cols=259 Identities=23% Similarity=0.466 Sum_probs=223.5
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
.++|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++|++ .+|++|+.||+|++||+ ..++++..
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~-~~~~~~~~ 194 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVT-------GKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNA-ETGECIHT 194 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTT-------CCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEET-TTTEEEEE
T ss_pred EEcCCEEEEEECCCcEEEEECCC-------CcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEEC-CcCcEEEE
Confidence 45689999999999999998763 356889999999999999974 59999999999999999 55688899
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
+.+|...|.++.|++ ..+++|+.||.|++||+ ..++++..+.+|...|.+++| +++.++++
T Consensus 195 ~~~h~~~v~~~~~~~----------------~~l~s~s~dg~i~~wd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 195 LYGHTSTVRCMHLHE----------------KRVVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ECCCSSCEEEEEEET----------------TEEEEEETTSEEEEEES-SSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred ECCCCCcEEEEEecC----------------CEEEEEeCCCEEEEEEC-CCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 999999999998853 57999999999999999 567788889999999999999 78899999
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
+.||.|++||+++++++..+..+ ...+.++++ ++.++++++.||.|++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~--~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGH------------------------------TNRVYSLQF--DGIHVVSGSLDTSIRV 303 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCC------------------------------SSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred cCCCEEEEEECCCCcEeEEecCC------------------------------CCceEEEEE--CCCEEEEEeCCCeEEE
Confidence 99999999999998887766533 233445555 7889999999999999
Q ss_pred EEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---cCCCEEEEEEcCCCCc
Q psy307 535 FSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA---HDGVCISTLWHPHEPS 611 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~~V~sl~~sp~~~~ 611 (1019)
||+.++ .....+.+|. ..+.++.+ ++.++++|+.||.|++||+.+++.+..+.+ |...|.+++|++ .
T Consensus 304 ~d~~~~---~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 373 (445)
T 2ovr_B 304 WDVETG---NCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---N 373 (445)
T ss_dssp EETTTC---CEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---S
T ss_pred EECCCC---CEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---C
Confidence 999887 4456777776 56777776 577999999999999999999999999986 888999999963 5
Q ss_pred EEEEEeCCCcEEEE
Q psy307 612 KVVTAGWDAATAKV 625 (1019)
Q Consensus 612 ~l~s~s~Dg~I~iw 625 (1019)
++++++.||.|++|
T Consensus 374 ~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 374 FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEEETTSEEEEE
T ss_pred EEEEEeCCCeEEEE
Confidence 89999999999776
No 78
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=3.5e-29 Score=290.10 Aligned_cols=277 Identities=19% Similarity=0.229 Sum_probs=224.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.++|+.+++++.|+.|++|+.. ..+.+..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+ ..++++
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~-~~~~~~ 174 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSN-------FNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNP 174 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTT-------SCEEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCCC
T ss_pred EEecCCCEEEEEECCCCEEEEeCC-------CcceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeC-CCCcCc
Confidence 356789999999999999999865 23567778899999999999996 789999999999999999 455677
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc---ccccEeE--------
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG---HRQAVRD-------- 441 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~---H~~~V~s-------- 441 (1019)
..+.+|...|.+++|+|++ .+|++|+.||.|++||+ ..++.+..+.. |...|.+
T Consensus 175 ~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRG--------------RNVLSASLDGTIRLWEC-GTGTTIHTFNRKENPHDGVNSIALFVGTD 239 (420)
T ss_dssp EEEECCSSCEEEEEEETTT--------------TEEEEEETTSCEEEEET-TTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred eEEcCCCCcEEEEEEcCCC--------------CEEEEEcCCCcEEEeEC-CCCceeEEeecCCCCCCCccEEEEecCCc
Confidence 8889999999999999998 68999999999999999 55677777764 3344444
Q ss_pred -------------EEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 442 -------------ICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 442 -------------l~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
++|+|++++|++++.||.|++||+++++.+..+.. .+.
T Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------------~~~ 290 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-----------------------------KFT 290 (420)
T ss_dssp SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-----------------------------TTS
T ss_pred ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-----------------------------ccC
Confidence 45578899999999999999999998886655432 233
Q ss_pred CcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 509 HSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 509 ~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
..+.+++|+|++. +|++|+.||.|++||+.++.. ....+.+|. ...+.++. ++++++|++|+.||.|++||+...
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~-~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINE-GTPINNVY-FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEEST-TSCEEEEE-EETTEEEEEETTTEEEEEEEECCT
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccC-CCCceEEE-eCCCCEEEEecCCccEEEEeccCC
Confidence 5677888888888 999999999999999987632 245565543 25677775 457889999999999999998773
Q ss_pred ---------ceeeeeeccCCCEEEEEEcCCCCc--EEEEEeCCCcEEEEe
Q psy307 588 ---------KLFKKWKAHDGVCISTLWHPHEPS--KVVTAGWDAATAKVQ 626 (1019)
Q Consensus 588 ---------~~l~~l~~h~~~V~sl~~sp~~~~--~l~s~s~Dg~I~iww 626 (1019)
.....+.+|.+.|.+++|+|++.. .++++|.+|.+.+|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 367 ESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp TCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred CCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 223345678889999999999831 677778888887774
No 79
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=297.80 Aligned_cols=281 Identities=11% Similarity=0.176 Sum_probs=230.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--- 369 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--- 369 (1019)
.++++|+.++++..|+.|++|+...... ..+.+..+.+|.+.|++++|+|+++.+|++|+.||.|++||+....
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 3577899999999999999998764221 2347889999999999999999768999999999999999996543
Q ss_pred ---EE--EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc------ccc
Q psy307 370 ---RC--VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH------RQA 438 (1019)
Q Consensus 370 ---~~--~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H------~~~ 438 (1019)
.. ...+.+|...|.+++|+|++. .+|++++.||.|++||+ .....+..+..| ...
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~l~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~ 216 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLA-------------HVFASAGSSNFASIWDL-KAKKEVIHLSYTSPNSGIKQQ 216 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCT-------------TEEEEESSSSCEEEEET-TTTEEEEEECCCCCSSCCCCC
T ss_pred ccccccccccccCCCCCeeEEEeCCCCC-------------cEEEEEcCCCCEEEEEC-CCCCcceEEeccccccccCCc
Confidence 22 223467899999999998842 78999999999999999 556777777776 789
Q ss_pred EeEEEEecCC-CEEEEEEcCC---eEEEEECCCCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 439 VRDICFNNTG-TNFISAGYDR---YLKLWDTESGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 439 V~sl~fspdg-~~l~S~s~Dg---~I~lWDl~t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
|.+++|+|++ ..+++++.|+ .|++||++++. ++..+. ..+...+.+
T Consensus 217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~v~~ 267 (416)
T 2pm9_A 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-----------------------------QGHQKGILS 267 (416)
T ss_dssp EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-----------------------------SCCSSCEEE
T ss_pred eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-----------------------------cCccCceeE
Confidence 9999999997 5899999999 99999998763 222221 134466788
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceee
Q psy307 514 VTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 514 v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
++|+| ++.+|++++.||.|++||+.++ ..+..+.+|. ..|.+++|+|++ .+|++++.||.|+|||+.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 88898 8999999999999999999887 4457777887 679999999999 899999999999999998776433
Q ss_pred eeec-----------------------------------cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 592 KWKA-----------------------------------HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 592 ~l~~-----------------------------------h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.... |..++.+++|+|+| .+|++++.||+|++|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSIT 410 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCB
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEE
Confidence 2211 66778899999998 799999999999665
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-29 Score=319.00 Aligned_cols=413 Identities=10% Similarity=0.021 Sum_probs=265.0
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccce-------eeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEec
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQV-------HTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV 365 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i-------~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl 365 (1019)
.++++|+.++++..|+.|++|+...... .+ ..+ ..+++|.+.|++++|+|+++.+|++|+.||.| +||+
T Consensus 105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~--~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 105 DTDASLDWMLIGLQNGSMIVYDIDRDQL--SS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp ECCTTCSEEEEEETTSCEEEEETTTTEE--EE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcc--cc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 4678999999999999999999864321 00 001 45689999999999999767899999999999 9999
Q ss_pred CCCcEEEEEeccc------------------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 366 YKERRCVRTYYGH------------------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 366 ~~~~~~~~~~~gh------------------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
...+++..+.+| ...|.+++|+|+| .+|++|+.||+|++||+.. ++
T Consensus 181 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--------------~~lasgs~Dg~i~lWd~~~-g~ 244 (902)
T 2oaj_A 181 -VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--------------LHIITIHEDNSLVFWDANS-GH 244 (902)
T ss_dssp -TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--------------SEEEEEETTCCEEEEETTT-CC
T ss_pred -CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--------------CEEEEEECCCeEEEEECCC-Cc
Confidence 456777777766 4679999999988 6999999999999999955 44
Q ss_pred EEEE--E---cc-------------ccccEeEEEEec----CC-CEEEEEEcCC-----eEEEEE---------------
Q psy307 428 CVRT--Y---YG-------------HRQAVRDICFNN----TG-TNFISAGYDR-----YLKLWD--------------- 464 (1019)
Q Consensus 428 ~~~~--l---~~-------------H~~~V~sl~fsp----dg-~~l~S~s~Dg-----~I~lWD--------------- 464 (1019)
++.. + .. |...|.+++|++ ++ ..+++|+.|. .|.+|+
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 4432 2 12 345799999954 33 3456665542 555555
Q ss_pred --------------------------------------------------------CCCCceEEE-------Ee-cCCce
Q psy307 465 --------------------------------------------------------TESGECISR-------FT-SRKVA 480 (1019)
Q Consensus 465 --------------------------------------------------------l~t~~~i~~-------~~-~~~~v 480 (1019)
+.+|..... +. ++..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 322211100 00 00122
Q ss_pred EEEEE----------------------------------ecCCCeeee----------ccCCCc----eee--------e
Q psy307 481 YCVKF----------------------------------HPDEDKQHL----------DIPVDM----KYI--------A 504 (1019)
Q Consensus 481 ~~v~~----------------------------------~p~~~~~~~----------~~~~~~----~~i--------~ 504 (1019)
.++++ +|++..++. +..... ..+ .
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred eEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC
Confidence 23332 233222221 111110 000 0
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc------------------------------------------
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK------------------------------------------ 542 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~------------------------------------------ 542 (1019)
..+...|.+++|+|+|++||+|+.||+|++|++.++..
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQG 564 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEE
T ss_pred CCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCc
Confidence 14556799999999999999999999999999976521
Q ss_pred ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-----eee-ccCCCEEEEEEc-----CCC--
Q psy307 543 LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK-----KWK-AHDGVCISTLWH-----PHE-- 609 (1019)
Q Consensus 543 ~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~-----~l~-~h~~~V~sl~~s-----p~~-- 609 (1019)
..++..+.+|. +.|++++||||| +||+|+.||+|+|||+.++..+. .+. +|.+.|++++|+ |||
T Consensus 565 ~~~~~~l~~h~--~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 565 FMPSTAVHANK--GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEEECCCS--CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred cceeEEEEcCC--CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 12356677787 789999999999 99999999999999998877654 343 889999999999 886
Q ss_pred CcEEEEEeCCCcEEEEecc---ceeeeeeecccc--------CCceeecc--cccccchhhhhhhccccc-CCCceeEEE
Q psy307 610 PSKVVTAGWDAATAKVQDA---NIVKIAVEMEKQ--------VPQLYQFN--QTLTLSSIIQEICSGWSL-SDSEQYALQ 675 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~---~i~ki~~e~~~~--------v~ql~~l~--~~~~LSs~~~~~~~~wsl-s~~e~~al~ 675 (1019)
+.+|++|+.||+|++|. . ..++......++ +..+..++ ......+. ...+....- .....+++.
T Consensus 642 ~~~l~sgs~D~tv~~wd-~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~-~~~~~~l~~~~~~~~~~l~ 719 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYK-ILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT-IPKMQNLSKGLCIPGIVLI 719 (902)
T ss_dssp EEEEEEEETTSEEEEEE-EEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB-HHHHHGGGGTCCCCEEEEE
T ss_pred ceEEEEEecCCcEEEEE-EecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCC-HHHHhccCCCCCCCeEEEE
Confidence 37999999999997764 3 222222222222 11121121 00000000 000111110 012223333
Q ss_pred eecCCCceEEecccccccc---C--CceEEE---E------ecCCccHHHHHhhcCCCchhhHHHHHHhhhe
Q psy307 676 FSETNNKNYITEKNRNEIK---N--GSVLRL---A------FSASKTADDILSKLSDKNASLEEKTAAEFYC 733 (1019)
Q Consensus 676 ~sd~~~~~~it~~~~~~I~---n--g~Vl~L---a------fSPd~~a~~Ilt~~~d~~i~lw~~~~~e~~~ 733 (1019)
.+ ....+++.....+.++ . ..+..+ . +++++ ..|++..+||+|++|..+..|-+.
T Consensus 720 ~~-~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~g~i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 720 TG-FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNL--TVIITLEINGHLRVFTIPDFKEQM 788 (902)
T ss_dssp EC-SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEE--EEEEEEETTSEEEEEETTTCCEEE
T ss_pred Ee-ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCc--eEEEEEeCCCcEEEEECcchHHHh
Confidence 33 3455666665554442 2 233343 4 56766 678999999999999976665444
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.2e-28 Score=269.09 Aligned_cols=272 Identities=21% Similarity=0.283 Sum_probs=217.9
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceee--eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHT--WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~--l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
++.++ .++. +.|++|++|+... ++++++ +.+|...|++++|+|+ +.+|++|+.||+|++||+ ..+++
T Consensus 33 WS~~~-~lAv-g~D~tV~iWd~~t-------g~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~ 101 (318)
T 4ggc_A 33 WSSGN-VLAV-ALDNSVYLWSASS-------GDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKR 101 (318)
T ss_dssp ECTTS-EEEE-EETTEEEEEETTT-------CCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred ECCCC-EEEE-EeCCEEEEEECCC-------CCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCcee
Confidence 34343 5555 4699999998763 334444 4578889999999996 889999999999999999 56788
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
+..+.+|...+.++.+.+ .++++|+.++.+++|+.......+..+.+|...+.++.+++++++|
T Consensus 102 ~~~~~~h~~~~~~~~~~~----------------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNS----------------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEEECCSSCEEEEEEET----------------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEecCccceEEEeecCC----------------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEE
Confidence 999999999888766543 5899999999999999988888999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE---EEEEec
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW---LACQSM 528 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~---Lasgs~ 528 (1019)
++++.|++|++||+++++..... ......+...+.++.++|++.. +++++.
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVP--------------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCC--------------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred EEEecCcceeEEECCCCcccccc--------------------------eeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 99999999999999876532111 0111223344556666665543 346678
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
++.|++||...... .... .+. ..+..+.|+|++..+++++ .||.|+|||+.+++++.++.+|.+.|++++|+
T Consensus 220 ~~~i~lwd~~~~~~---~~~~-~~~--~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 220 DRHIRIWNVCSGAC---LSAV-DAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 293 (318)
T ss_dssp TCEEEEEETTTCCE---EEEE-ECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEecccccc---cccc-cce--eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 89999999887532 2222 232 5688999999999887654 79999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
|++ .+|+|||.||+|++|
T Consensus 294 pdg-~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 294 PDG-ATVASAAADETLRLW 311 (318)
T ss_dssp TTS-SCEEEEETTTEEEEE
T ss_pred CCC-CEEEEEecCCeEEEE
Confidence 998 689999999999877
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.1e-29 Score=287.50 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=219.3
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc------EEEEE
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER------RCVRT 374 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~------~~~~~ 374 (1019)
+++++.|+.|.+|+...... ....+..+.+|.+.|++++|+|.++.+|++|+.||.|+|||+.... .++..
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 126 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEE---CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred EEEEcCCCEEEEEECccCCC---CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence 44578899999998754322 1245667899999999999999658999999999999999996543 56788
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE--ccccccEeEEEEecCCCEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY--YGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l--~~H~~~V~sl~fspdg~~l~ 452 (1019)
+.+|...|.+++|+|++. .+|++|+.||.|++||+ ..+..+..+ .+|...|.+++|+|++++|+
T Consensus 127 ~~~h~~~v~~~~~~p~~~-------------~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 127 LEGHTKRVGIVAWHPTAQ-------------NVLLSAGCDNVILVWDV-GTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp EECCSSCEEEEEECSSBT-------------TEEEEEETTSCEEEEET-TTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred ecCCCCeEEEEEECcCCC-------------CEEEEEcCCCEEEEEEC-CCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 899999999999999873 58999999999999999 566778888 89999999999999999999
Q ss_pred EEEcCCeEEEEECCCCceEEEE-ecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE---ec
Q psy307 453 SAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ---SM 528 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg---s~ 528 (1019)
+++.||.|++||+++++++..+ ..+. ...+.+++|+|++.+|++| +.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHE-----------------------------GTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSC-----------------------------SSSCCEEEECSTTEEEEEEECTTC
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCC-----------------------------CCcceEEEEcCCCcEEEEeccCCC
Confidence 9999999999999998877666 2221 1236678889999999999 78
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCce-eeeeec--cCCCEEEEE
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDWKTTKL-FKKWKA--HDGVCISTL 604 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~t~~~-l~~l~~--h~~~V~sl~ 604 (1019)
|+.|++||+.+.........+ .+. ..+.+++|+|+|++|+ +|+.||.|++||+.+++. +..+.. |.+.|.+++
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~-~~~--~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQEL-DTS--SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEEC-CCC--SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred CceEEEEcCccccCCceEEec-cCC--CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 999999999876432112222 233 5689999999999986 556799999999999884 555554 458999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++ .+++ +.|+.+++|
T Consensus 321 ~sp~~-~~~~--s~~~~~~~~ 338 (402)
T 2aq5_A 321 YMPKR-GLEV--NKCEIARFY 338 (402)
T ss_dssp ECCGG-GSCG--GGTEEEEEE
T ss_pred Eeccc-ccce--ecceeEEEE
Confidence 99998 4554 355666554
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.5e-29 Score=296.31 Aligned_cols=282 Identities=13% Similarity=0.094 Sum_probs=213.5
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
+++ .++.+++|+.|+.|+||+..... ...+..+.||.+.|++|+|+|.++.+|+||+.||+|+|||+.. ....
T Consensus 127 ~~P~~~~~lasGs~dg~i~lWd~~~~~-----~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-~~~~ 200 (435)
T 4e54_B 127 WHPTHPSTVAVGSKGGDIMLWNFGIKD-----KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILR 200 (435)
T ss_dssp ECSSCTTCEEEEETTSCEEEECSSCCS-----CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-CEEE
T ss_pred EeCCCCCEEEEEeCCCEEEEEECCCCC-----ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-Ccee
Confidence 444 56789999999999999876432 2345667899999999999997789999999999999999943 3322
Q ss_pred EEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCC-
Q psy307 373 RTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGT- 449 (1019)
Q Consensus 373 ~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~- 449 (1019)
.... .+...+.+++|+|++ .+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--------------~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASS--------------RMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTT--------------TEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEeccCCCCccEEEEEECCCC--------------CEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCce
Confidence 2222 334467889999888 699999999999999983 456677889999999999999986
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC
Q psy307 450 NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD 529 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D 529 (1019)
.|++|+.|++|+|||+++++....+. ....|...|.+++|+|+|.+|++++.|
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~---------------------------~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFL---------------------------YSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCS---------------------------BCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred EEEEecCcceeeEEecccccccceEE---------------------------EeeeccccccceeECCCCCeeEEEcCC
Confidence 68899999999999998765322111 112355678899999999999999999
Q ss_pred CeEEEEEccCcccccceeEEeccccc----cceEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCceeeee
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVA----GYACSLDFSPDMSYLISGD------------ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~----~~V~~v~fspdg~~Lasgs------------~DG~I~IWDl~t~~~l~~l 593 (1019)
|.|++||+.++.. ...+.+|... ..+..+.|+|++.++++++ .++.|++||..+++.+..+
T Consensus 318 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 318 SEIRVYSASQWDC---PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SCEEEEESSSSSS---EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CEEEEEECCCCcc---ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 9999999987633 2334333211 1233456667666666554 3457999999999998887
Q ss_pred e-ccCCCEEEE-EEcCCCCcEEEEEeCCCcEEEEeccce
Q psy307 594 K-AHDGVCIST-LWHPHEPSKVVTAGWDAATAKVQDANI 630 (1019)
Q Consensus 594 ~-~h~~~V~sl-~~sp~~~~~l~s~s~Dg~I~iwwd~~i 630 (1019)
. +|...|.++ +|+|++ .+|++|+ |++|++ |+..-
T Consensus 395 ~~~~~~~v~s~~~fspdg-~~lasg~-d~~i~i-W~~~~ 430 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMG-DTLASAM-GYHILI-WSQQE 430 (435)
T ss_dssp CCSSCCCCCCEEEECTTS-SCEEEEC-SSEEEE-CCCC-
T ss_pred eCCCCCcEEEEEEECCCC-CEEEEEc-CCcEEE-EECCc
Confidence 5 677888887 699998 5777765 788855 55543
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8e-28 Score=283.12 Aligned_cols=273 Identities=22% Similarity=0.359 Sum_probs=228.5
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..+++.+++++.|+.|++|+... .+.+.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ ..++++..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~~~ 198 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSIN-------KKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCTHV 198 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEEEE
T ss_pred EECCCEEEEEcCCCcEEEEECCC-------CcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEEEE
Confidence 34678999999999999998753 4578899999999999999996 3 9999999999999999 55678899
Q ss_pred ecccCccEeEEEEcC--CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe----------------------EEE
Q psy307 375 YYGHRQAVRDICFNN--TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR----------------------CVR 430 (1019)
Q Consensus 375 ~~gh~~~V~~i~fsp--dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~----------------------~~~ 430 (1019)
+.+|...|.+++|++ ++ .+|++|+.||.|++||+..... ...
T Consensus 199 ~~~h~~~v~~l~~~~~~~~--------------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 199 FEGHNSTVRCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp ECCCSSCEEEEEEEESSSC--------------EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred ECCCCCccEEEEEecCCCC--------------CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 999999999999985 44 7899999999999999965432 366
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
.+.+|...|.++ +++++++++++.||+|++||+++++++..+.. +...
T Consensus 265 ~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------------------------------~~~~ 312 (464)
T 3v7d_B 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG------------------------------HTDR 312 (464)
T ss_dssp EECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC------------------------------CSSC
T ss_pred EccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------------CCCC
Confidence 788999999877 56889999999999999999999988776643 2345
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
+.+++++|+++++++|+.||.|++||+.++ .....+.+|. ..|.+++|+ +.+|++|+.||.|++||+.++...
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTT---EEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 677888889999999999999999999887 4557788887 779999997 689999999999999999998776
Q ss_pred eeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeee
Q psy307 591 KKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIA 634 (1019)
Q Consensus 591 ~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~ 634 (1019)
.... |...+..++|+|++ .++++++ ||.|++| +....+..
T Consensus 386 ~~~~-~~~~~~~~~~~~~~-~~l~~~~-dg~i~iw-d~~~g~~~ 425 (464)
T 3v7d_B 386 FSYH-HTNLSAITTFYVSD-NILVSGS-ENQFNIY-NLRSGKLV 425 (464)
T ss_dssp EEEE-CTTCCCEEEEEECS-SEEEEEE-TTEEEEE-ETTTCCEE
T ss_pred eeec-CCCCccEEEEEeCC-CEEEEec-CCeEEEE-ECCCCcEE
Confidence 6553 56677888999988 5888887 8988655 55444443
No 85
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1e-28 Score=277.41 Aligned_cols=273 Identities=15% Similarity=0.214 Sum_probs=226.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+....+|.+.|++++|+|+ +.+|++|+.||.|+||++.... .....+.+|...|.+++|+|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 68 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-------------- 68 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--------------
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC--------------
Confidence 3445689999999999995 8899999999999999996543 2345566899999999999988
Q ss_pred c-EEEEEeCCCcEEEEEc-cCCCeEEEEEcc--ccccEeEEEEecCCCEEEEEEcCCeEEEEECCC---------CceEE
Q psy307 406 H-LLLSCSMDCRVKLWEV-YKEHRCVRTYYG--HRQAVRDICFNNTGTNFISAGYDRYLKLWDTES---------GECIS 472 (1019)
Q Consensus 406 ~-~L~sgs~Dg~I~IWDl-~~~~~~~~~l~~--H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t---------~~~i~ 472 (1019)
. +|++|+.||.|++||+ .... ...+.+ |...|.+++|+| +..|++++.|+.|++||+++ ++++.
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 7 8999999999999998 5543 377788 999999999999 99999999999999999988 77777
Q ss_pred EEecCCceEEEEEecCC--------CeeeeccCC----CceeeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccC
Q psy307 473 RFTSRKVAYCVKFHPDE--------DKQHLDIPV----DMKYIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALN 539 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~--------~~~~~~~~~----~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~ 539 (1019)
.+.....+.+++|+|++ ....++... ........+...+.+++|+| +++++++++.||.|++|++..
T Consensus 146 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred EEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 77777889999999876 111112222 12234445667789999999 999999999999999999976
Q ss_pred cc---cccceeEEecccc-------ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-CCCEEEEEEcCC
Q psy307 540 RF---KLNRKKTFEGHMV-------AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-DGVCISTLWHPH 608 (1019)
Q Consensus 540 ~~---~~~~~~~l~gh~~-------~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-~~~V~sl~~sp~ 608 (1019)
.. .......+.+|.. ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+| .+.|.+++ |+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~ 303 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CS 303 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--EC
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CC
Confidence 51 0134566777752 247999999999999999999999999999999999999998 99999999 88
Q ss_pred CCcEEEEEeCCCc
Q psy307 609 EPSKVVTAGWDAA 621 (1019)
Q Consensus 609 ~~~~l~s~s~Dg~ 621 (1019)
+ .+|++++.||.
T Consensus 304 ~-~~l~s~s~Dg~ 315 (342)
T 1yfq_A 304 D-NILCLATSDDT 315 (342)
T ss_dssp S-SEEEEEEECTH
T ss_pred C-CeEEEEecCCc
Confidence 7 69999999998
No 86
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=6.3e-28 Score=278.70 Aligned_cols=264 Identities=19% Similarity=0.341 Sum_probs=215.3
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC------------------CCeEEEEEcCCCCcEEEEe
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT------------------KGISAIRWFPKSAHLLLSC 354 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~------------------~~V~~i~fspd~g~lLaSg 354 (1019)
.++++|+.++++. ++.+++|+.... +.+..+.+|. ..|++++|+|+ +.+|++|
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s~ 141 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDG-------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATG 141 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTC-------CEEEEECC-----------------CCCCBEEEEEECTT-SSEEEEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCC-------CEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEEE
Confidence 4678999999876 789999987532 3344454443 34999999995 8899999
Q ss_pred eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc
Q psy307 355 SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 355 s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
+.||.|+|||+ ..++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+ ..+.+...+.
T Consensus 142 ~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~--------------~~l~s~s~d~~v~iwd~-~~~~~~~~~~- 204 (393)
T 1erj_A 142 AEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSG--------------DKLVSGSGDRTVRIWDL-RTGQCSLTLS- 204 (393)
T ss_dssp ETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTS--------------SEEEEEETTSEEEEEET-TTTEEEEEEE-
T ss_pred cCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCC--------------CEEEEecCCCcEEEEEC-CCCeeEEEEE-
Confidence 99999999999 5667888999999999999999998 68999999999999999 4555555554
Q ss_pred ccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEe--------cCCceEEEEEecCCCeeeeccCCCce----
Q psy307 435 HRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFT--------SRKVAYCVKFHPDEDKQHLDIPVDMK---- 501 (1019)
Q Consensus 435 H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--------~~~~v~~v~~~p~~~~~~~~~~~~~~---- 501 (1019)
+...|.+++|+| ++++|++|+.|++|++||++++.++..+. +...+.+++|+|++..++........
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 567899999999 89999999999999999999999887762 34678999999998766542221111
Q ss_pred -------------------eeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 502 -------------------YIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 502 -------------------~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.....|...|.+++++|++.+|++|+.||.|++||+.++ .....+.+|. ..|.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~--~~v~~v~ 359 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR--NSVISVA 359 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCC--CCEEEEE
Confidence 122346667889999999999999999999999999887 3457788887 6799999
Q ss_pred EcC------CCCEEEEEeCCCeEEEEeCCCC
Q psy307 563 FSP------DMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 563 fsp------dg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++ ++.+|++|+.||+|+||++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 876 6889999999999999997643
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.8e-28 Score=283.30 Aligned_cols=260 Identities=22% Similarity=0.422 Sum_probs=222.9
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..+|+.+++++.|+.|++|+... .+.+.++.+|.+.|++++| ++.+|++|+.||.|++||+ ..++++..
T Consensus 140 ~~d~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~-~~~~~~~~ 208 (435)
T 1p22_A 140 QYDDQKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDV-NTGEMLNT 208 (435)
T ss_dssp ECCSSEEEEEESSSCEEEEESSS-------CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEES-SSCCEEEE
T ss_pred EECCCEEEEEeCCCeEEEEeCCC-------CeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEEC-CCCcEEEE
Confidence 34789999999999999998753 4568889999999999998 3679999999999999999 55678889
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEccccccEeEEEEecCCCEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
+.+|...|.+++|++ .++++|+.||.|++||+..... ....+.+|...|.+++| ++++++
T Consensus 209 ~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN----------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp ECCCCSCEEEEECCT----------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred EcCCCCcEEEEEEcC----------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 999999999998863 4899999999999999965443 34778899999999999 778999
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
+|+.||+|++||+++++++..+..+. ..+.++.+ ++.++++|+.||.|
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------~~v~~~~~--~~~~l~~g~~dg~i 318 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHK------------------------------RGIACLQY--RDRLVVSGSSDNTI 318 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCS------------------------------SCEEEEEE--ETTEEEEEETTSCE
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCC------------------------------CcEEEEEe--CCCEEEEEeCCCeE
Confidence 99999999999999999888776432 23344444 46799999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeeccCCCEEEE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK---------LFKKWKAHDGVCIST 603 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~---------~l~~l~~h~~~V~sl 603 (1019)
++||+.++ .....+.+|. ..|.+++| ++.+|++|+.||.|++||+.++. .+..+.+|.+.|.++
T Consensus 319 ~iwd~~~~---~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 319 RLWDIECG---ACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp EEEETTTC---CEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEECCCC---CEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 99999887 4557788887 67999998 88999999999999999998776 788999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEE
Q psy307 604 LWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 604 ~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+| ++ ..+++++.||+|++|
T Consensus 392 ~~--~~-~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 392 QF--DE-FQIVSSSHDDTILIW 410 (435)
T ss_dssp EE--CS-SCEEECCSSSEEEEE
T ss_pred Ee--CC-CEEEEEeCCCEEEEE
Confidence 99 44 589999999999776
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=285.17 Aligned_cols=259 Identities=19% Similarity=0.284 Sum_probs=202.2
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc----------EEEEEecccC------------ccEeEEEEcCC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER----------RCVRTYYGHR------------QAVRDICFNNT 390 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~----------~~~~~~~gh~------------~~V~~i~fspd 390 (1019)
.|.+.|++++|+|+ +.+|++|+.||.|+|||+.... ++...+.+|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 36789999999995 8999999999999999995443 2678889998 88999999887
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--------------------------------------EEEE-
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--------------------------------------CVRT- 431 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--------------------------------------~~~~- 431 (1019)
+. ..+|++++.||.|++||+..... +...
T Consensus 105 ~~------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 105 KN------------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CS------------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred CC------------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 62 14899999999999999854221 1112
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCc
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHS 510 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~ 510 (1019)
..+|...|.+++|+|++++|++| .|++|++||+++ ++++..+... | .....+...
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~--------------~~~~~~~~~ 228 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------P--------------ANMEELTEV 228 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------C--------------SSGGGCCCC
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------c--------------ccccccCcc
Confidence 36899999999999999999998 899999999984 3333332110 0 012235567
Q ss_pred ccEEEEcCCC-CEEEEEecCCeEEEEEccCccc-ccceeEEeccccc----------cceEEEEEcCCCCEEEEEeCCCe
Q psy307 511 MPAVTSSPNN-KWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVA----------GYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 511 i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~----------~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
|.+++|+|++ .+|++|+.||.|++||++++.. ......+.+|... +.|.+++|+|+|++|++++. |.
T Consensus 229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~ 307 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS 307 (447)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence 8899999998 9999999999999999987642 1124667776520 27999999999999999999 99
Q ss_pred EEEEeCCC-CceeeeeeccCCC---------------EEEEEEcCCCCcEEEEEeCCCcEEEEecccee
Q psy307 579 CYIWDWKT-TKLFKKWKAHDGV---------------CISTLWHPHEPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 579 I~IWDl~t-~~~l~~l~~h~~~---------------V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
|+|||+.+ ++++..+.+|... +..++|+|++ .+|++++.||.|++| +....
T Consensus 308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iw-d~~~~ 374 (447)
T 3dw8_B 308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMF-DRNTK 374 (447)
T ss_dssp EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEE-ETTTC
T ss_pred EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEE-EcCCC
Confidence 99999997 8899999988642 3349999998 689999999999665 54443
No 89
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=4.2e-27 Score=262.76 Aligned_cols=264 Identities=16% Similarity=0.298 Sum_probs=223.1
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeec--cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWE--GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~--gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
++++|+.++++. |+.+++|+...... ...+..+. +|...|++++|+|+ +.+|++|+.||.|++||+.... .
T Consensus 59 ~~~~~~~l~~~~-dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~ 132 (337)
T 1gxr_A 59 ISNPTRHVYTGG-KGCVKVWDISHPGN----KSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTC----CSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--E
T ss_pred EecCCcEEEEcC-CCeEEEEECCCCCc----eeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcc
Confidence 567899999998 99999998864331 12233343 89999999999995 8899999999999999995443 2
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
....+.+|...|.+++|+|++ ++|++++.||.|++||+ ..++.+..+.+|...|.+++|+|+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~--------------~~l~~~~~dg~v~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPDS--------------KVCFSCCSDGNIAVWDL-HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTS--------------SEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eeeecccCCCceEEEEECCCC--------------CEEEEEeCCCcEEEEeC-CCCceeeeeecccCceEEEEECCCCCE
Confidence 566788999999999999988 68999999999999999 567888899999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeecc----------CCCceeeeCCCCCcccEEEEcCCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDI----------PVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~----------~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
|++++.|+.|++||+++++.+..+.....+.+++|+|++...+... ..........+...+.+++|+|++
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred EEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCC
Confidence 9999999999999999999999998888999999999987665532 222233345567789999999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
++|++++.||.|++||+.++... .. ..|. ..+.+++|+|++++|++++.||.|++||+
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~---~~-~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASI---FQ-SKES--SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEE---EE-EECS--SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEE---EE-ecCC--CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999876432 22 2343 67999999999999999999999999996
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=4.5e-29 Score=279.41 Aligned_cols=244 Identities=18% Similarity=0.284 Sum_probs=194.5
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+..... ..++.++.+|.+.|++++|+|+ ++.+|+||+.|++|+|||+.... .
T Consensus 20 ~~s~~g~~lasgs~D~~v~lwd~~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 20 QMDYYGTRLATCSSDRSVKIFDVRNGG-----QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE 94 (316)
T ss_dssp EECGGGCEEEEEETTTEEEEEEEETTE-----EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC
T ss_pred eEcCCCCEEEEEeCCCeEEEEEecCCC-----cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce
Confidence 356789999999999999999875321 1356789999999999999863 47899999999999999996532 4
Q ss_pred EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe--EEEEEccccccEeEEEEecC-
Q psy307 371 CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR--CVRTYYGHRQAVRDICFNNT- 447 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~l~~H~~~V~sl~fspd- 447 (1019)
+...+.+|...|.+++|+|++. +.+|++|+.|++|++||+..... ....+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~h~~~V~~v~~~p~~~------------g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAPHDY------------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEEEECCCSSCCCEEEECCTTT------------CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEEccCCCCceEEEEECCCCC------------CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 6677889999999999999731 16899999999999999965433 24556789999999999997
Q ss_pred ----------------CCEEEEEEcCCeEEEEECCCCc---eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 448 ----------------GTNFISAGYDRYLKLWDTESGE---CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 448 ----------------g~~l~S~s~Dg~I~lWDl~t~~---~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
+++|++|+.|++|++||++.+. ++..+. .|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~------------------------------~h~ 212 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE------------------------------AHS 212 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB------------------------------CCS
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc------------------------------cCC
Confidence 4689999999999999987542 222222 234
Q ss_pred CcccEEEEcCCC----CEEEEEecCCeEEEEEccCccc-ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy307 509 HSMPAVTSSPNN----KWLACQSMDNKILIFSALNRFK-LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWD 583 (1019)
Q Consensus 509 ~~i~~v~~spdg----~~Lasgs~Dg~I~iwd~~~~~~-~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWD 583 (1019)
..|.+++|+|++ .+|++++.||+|++|++.+... ......+.+|. ..|.+++|+|+|++|++|+.||+|+||+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN--DVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS--SCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC--CcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 556677777765 7899999999999999876311 11123445565 6799999999999999999999999999
Q ss_pred CC
Q psy307 584 WK 585 (1019)
Q Consensus 584 l~ 585 (1019)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=3.1e-27 Score=271.24 Aligned_cols=300 Identities=12% Similarity=0.089 Sum_probs=224.4
Q ss_pred CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe-----------
Q psy307 307 DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY----------- 375 (1019)
Q Consensus 307 D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~----------- 375 (1019)
+..+++|+... .+....+.+|.+.|++++|+|.++.+|++|+.||.|++||+.... ....+
T Consensus 22 ~~~~~v~~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~ 93 (408)
T 4a11_B 22 ESTRRVLGLEL-------NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVCSIGRD 93 (408)
T ss_dssp HHHHHHHTEEE-------CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEEEECTT
T ss_pred cCcceeecccc-------CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccccccccc
Confidence 34556665442 245678889999999999999448899999999999999995432 22111
Q ss_pred --cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCC---CE
Q psy307 376 --YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG---TN 450 (1019)
Q Consensus 376 --~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg---~~ 450 (1019)
.+|...|.+++|+|++. .+|++++.||.|++||+ ..+.....+. +...+.++.|++.+ ..
T Consensus 94 ~~~~~~~~v~~~~~~~~~~-------------~~l~s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDT-------------GMFTSSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCL 158 (408)
T ss_dssp CTTCCSSCEEEEEECTTCT-------------TCEEEEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCE
T ss_pred ccccCCCcEEEEEEccCCC-------------cEEEEEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcE
Confidence 25888999998888432 68999999999999999 4555555554 78889999999854 48
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEec-CCceEEEEEecCCCe-eeeccCCCceeee------------------------
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTS-RKVAYCVKFHPDEDK-QHLDIPVDMKYIA------------------------ 504 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~p~~~~-~~~~~~~~~~~i~------------------------ 504 (1019)
+++++.|+.|++||+++++++..+.. ...+.+++|+|++.. .+.........++
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence 99999999999999999998888874 467999999999885 3332211111111
Q ss_pred ---CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 505 ---DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 505 ---~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
..+...+.+++|+|++++|++++.||.|++||+.++.................+........+..+++++.||.|++
T Consensus 239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 34667789999999999999999999999999987643221111000000011111222334556777788999999
Q ss_pred EeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecccee
Q psy307 582 WDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIV 631 (1019)
Q Consensus 582 WDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ 631 (1019)
||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++| +....
T Consensus 319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw-~~~~~ 366 (408)
T 4a11_B 319 YTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAW-VPSLY 366 (408)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEE-EECC-
T ss_pred EECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEE-eCCCC
Confidence 9999999999999999999999999998 699999999999765 44443
No 92
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8.3e-28 Score=281.13 Aligned_cols=252 Identities=20% Similarity=0.324 Sum_probs=210.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---------cEEEEEecccCccEeEEEEcCCCCceeEEE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---------RRCVRTYYGHRQAVRDICFNNTGTNFISAI 398 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---------~~~~~~~~gh~~~V~~i~fspdg~~~vs~i 398 (1019)
+....+|.+.|++++|+|+++.+|++|+.||.|+||++... ...+..+.+|...|.+++|+|++.
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------ 194 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN------ 194 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST------
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC------
Confidence 34567899999999999976889999999999999999542 566788899999999999999873
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCe------EEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCc--
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHR------CVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGE-- 469 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~------~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~-- 469 (1019)
.+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++..|++++.||.|++||++++.
T Consensus 195 -------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 195 -------GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp -------TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred -------CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 4899999999999999965321 2466779999999999999 67789999999999999998763
Q ss_pred -eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCccccccee
Q psy307 470 -CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 470 -~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
.+..+. .+...+.+++|+|++. +|++|+.||.|++||++... ..+.
T Consensus 268 ~~~~~~~------------------------------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~ 315 (430)
T 2xyi_A 268 KPSHTVD------------------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLH 315 (430)
T ss_dssp SCSEEEE------------------------------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSE
T ss_pred cceeEee------------------------------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeE
Confidence 222222 2345677888888886 68899999999999998742 3456
Q ss_pred EEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCC--------------CceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 548 TFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKT--------------TKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t--------------~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
.+.+|. +.|.+++|+|+++ +|++|+.||.|+|||+.. .+++..+.+|...|.+++|+|+++.+
T Consensus 316 ~~~~h~--~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 316 SFESHK--DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp EEECCS--SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred EeecCC--CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 777776 7799999999995 799999999999999987 36777888999999999999999669
Q ss_pred EEEEeCCCcEEEEe
Q psy307 613 VVTAGWDAATAKVQ 626 (1019)
Q Consensus 613 l~s~s~Dg~I~iww 626 (1019)
+++++.||.|++|.
T Consensus 394 l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEECCCCEEEeE
Confidence 99999999997773
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.8e-27 Score=275.35 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=223.1
Q ss_pred eeccCCCCe--EEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 330 TWEGHTKGI--SAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 330 ~l~gH~~~V--~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
...+|...+ .+++|++ ..+++++.||.|++||+.. +.....+.. |...|.+++|+|++ .
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~--------------~ 147 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG--------------S 147 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS--------------S
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC--------------C
Confidence 344676654 4566654 3578889999999999954 444555444 88999999999988 6
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCCceEEEEE
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~ 485 (1019)
+|++|+.||.|++||+ ..+..+..+.+|...|.+++| +++.|++++.||.|++||++. +..+..+..
T Consensus 148 ~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------- 215 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDV-ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG--------- 215 (401)
T ss_dssp EEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEEC---------
T ss_pred EEEEECCCCeEEEEEC-cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcC---------
Confidence 9999999999999999 566788889999999999999 457999999999999999984 444443332
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
+...+.+++|+|++++|++|+.||.|++||+.++ .....+.+|. ..|.+++|+|
T Consensus 216 ---------------------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~--~~v~~~~~~p 269 (401)
T 4aez_A 216 ---------------------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---IPKFTKTNHN--AAVKAVAWCP 269 (401)
T ss_dssp ---------------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS---SEEEEECCCS--SCCCEEEECT
T ss_pred ---------------------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC---CccEEecCCc--ceEEEEEECC
Confidence 3456778888999999999999999999999876 3446666776 6799999999
Q ss_pred CCC-EEEEEe--CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE--eCCCcEEEEeccceeeeeeecccc
Q psy307 566 DMS-YLISGD--ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA--GWDAATAKVQDANIVKIAVEMEKQ 640 (1019)
Q Consensus 566 dg~-~Lasgs--~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~--s~Dg~I~iwwd~~i~ki~~e~~~~ 640 (1019)
++. ++++|+ .||.|++||+.+++.+..+. |...|.+++|+|++ ..++++ +.||.|++|. ....+.
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~-~~~~~~------- 339 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWS-YSSSGL------- 339 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEE-EETTEE-------
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEe-cCCccc-------
Confidence 765 566655 79999999999999998886 56689999999998 467774 4899997762 110000
Q ss_pred CCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCc
Q psy307 641 VPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKN 720 (1019)
Q Consensus 641 v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~ 720 (1019)
.....+ .-|.+.|++++|+|++ +.|++++.||+
T Consensus 340 ------------------------------~~~~~~---------------~~h~~~v~~~~~s~dg--~~l~s~~~dg~ 372 (401)
T 4aez_A 340 ------------------------------TKQVDI---------------PAHDTRVLYSALSPDG--RILSTAASDEN 372 (401)
T ss_dssp ------------------------------EEEEEE---------------ECCSSCCCEEEECTTS--SEEEEECTTSE
T ss_pred ------------------------------eeEEEe---------------cCCCCCEEEEEECCCC--CEEEEEeCCCc
Confidence 000000 1356789999999998 78999999999
Q ss_pred hhhHHHHHHhhh
Q psy307 721 ASLEEKTAAEFY 732 (1019)
Q Consensus 721 i~lw~~~~~e~~ 732 (1019)
|++|+....+.+
T Consensus 373 i~iw~~~~~~~~ 384 (401)
T 4aez_A 373 LKFWRVYDGDHV 384 (401)
T ss_dssp EEEEECCC----
T ss_pred EEEEECCCCccc
Confidence 999986544433
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=269.14 Aligned_cols=281 Identities=13% Similarity=0.050 Sum_probs=217.8
Q ss_pred CCCCCCCee-eeCCC---CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC--CcEEEEeeCCCeEEEEecC
Q psy307 293 PTDYQGRSF-LHPPH---DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS--AHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 293 ~~~~~gr~~-~~~~~---D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~--g~lLaSgs~Dg~I~IWdl~ 366 (1019)
.+.++|..+ ++++. |+.|++|+...... ......+|...|++++|+|++ +.+|++|+.||.|++||+.
T Consensus 25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp EECTTSSEEEEEEC--CCCEEEEEEEECSSSE------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred EEcCCCceEEEecCccCCCcEEEEEeCCCCcc------cceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 356777655 46655 89999998764321 112234899999999999974 7899999999999999996
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc----cEeEE
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ----AVRDI 442 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~----~V~sl 442 (1019)
....++..+.+|...|.++.|.+. ++|+|+ +.+|++|+.||.|++||+......+..+..|.+ .|.++
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~~~-------~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGIGG-------LGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEESG-------GGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred CCCccEEEEEecccceEEEeeccc-------cccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 555478889999999999966431 011121 168999999999999999766657777766655 89999
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec---CCCeeeeccCCCcee-------------
Q psy307 443 C----FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP---DEDKQHLDIPVDMKY------------- 502 (1019)
Q Consensus 443 ~----fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p---~~~~~~~~~~~~~~~------------- 502 (1019)
+ |+|++++|++++.||.|++||+++++..........+.+++|+| ++...+.........
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 8 78899999999999999999999999888878888999999999 776655422211111
Q ss_pred ---eeCCCCCcccEEEEcCCCC-EEEEEecCCeEEEEEccCcccc----------------cceeEEeccccccceEEEE
Q psy307 503 ---IADPTMHSMPAVTSSPNNK-WLACQSMDNKILIFSALNRFKL----------------NRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 503 ---i~~~~~~~i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~----------------~~~~~l~gh~~~~~V~~v~ 562 (1019)
....+...+.+++|+|++. +|++++.||.|++||+...... ..+..+.+|. ..|.+++
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~v~~~~ 328 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST--QPISSLD 328 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS--SCEEEEE
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC--CCeeEEE
Confidence 1125778899999999998 8999999999999999864322 3466777786 7799999
Q ss_pred EcCCCCEEE-EEeCCCeEEEEeCCCCce
Q psy307 563 FSPDMSYLI-SGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 563 fspdg~~La-sgs~DG~I~IWDl~t~~~ 589 (1019)
|+|+|++|+ +|+.||.|+|||+.+.+.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999998 899999999999987654
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=1.1e-27 Score=276.93 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=197.2
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE---EEEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEe
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR---CVRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~---~~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
....++++|+...++++|+.||.|+||++...++ .+..+.+|...|.+++|+| ++ .+|++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--------------~~l~s~s 101 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--------------NVIASGS 101 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--------------TEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--------------CEEEEEe
Confidence 3446888997556677789999999999965543 3456789999999999999 66 7999999
Q ss_pred CCCcEEEEEccCCC------eEEEEEccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE
Q psy307 413 MDCRVKLWEVYKEH------RCVRTYYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~------~~~~~l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~ 485 (1019)
.||.|++||+.... .++..+.+|...|.+++|+|++ ..|++++.|++|++||+++++++..+..
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------- 172 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--------- 172 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT---------
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec---------
Confidence 99999999996543 5678889999999999999998 6999999999999999999987766620
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE-eccccccceEEEEEc
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF-EGHMVAGYACSLDFS 564 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l-~gh~~~~~V~~v~fs 564 (1019)
..+...+.+++|+|++++|++++.||.|++||++++. ....+ .+|.. ..+.++.|+
T Consensus 173 -------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~~ 229 (402)
T 2aq5_A 173 -------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEG-TRPVHAVFV 229 (402)
T ss_dssp -------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECSSCS-SSCCEEEEC
T ss_pred -------------------CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---eeeeeccCCCC-CcceEEEEc
Confidence 1233567788888999999999999999999998763 34555 56652 347889999
Q ss_pred CCCCEEEEE---eCCCeEEEEeCCCCce-eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 565 PDMSYLISG---DADGKCYIWDWKTTKL-FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 565 pdg~~Lasg---s~DG~I~IWDl~t~~~-l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++|++| +.||.|++||+.+++. +.... .|...+.+++|+|++..++++++.||.|++|
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 999999999 7999999999998765 33333 4677899999999985444566689999776
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-28 Score=284.77 Aligned_cols=346 Identities=9% Similarity=0.039 Sum_probs=243.5
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
-.++++|+.+++++.|++|+ +.. ....++||.+.|.+++|+|++ .++.+.+|+.. . ..
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~----------~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~-~-~~ 78 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPK----------YAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQ-Q-NG 78 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EEC----------CCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCC-S-SC
T ss_pred EEECCCCCEEEEEcCCceee--ccc----------ccceecCCCccEEEEEECCCC--------CcceEEEEeCC-C-ce
Confidence 35789999999999999998 321 123447999999999999973 56666666642 1 11
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccc-----cEeEEEEec
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ-----AVRDICFNN 446 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~-----~V~sl~fsp 446 (1019)
...+ .|...|.+++|+|+| .+|++++.||.|++||... ++..+. |.. .|.+++|||
T Consensus 79 ~~~~-~~~~~V~~vawSPdG--------------~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSP 139 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPID--------------DWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNP 139 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSS--------------SCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECS
T ss_pred Eeec-CCCCcEEEEEECCCC--------------CEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcC
Confidence 1122 568889999999999 6899999999999999522 666667 665 599999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCce-------EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 447 TGTNFISAGYDRYLKLWDTESGEC-------ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~-------i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
||++|++|+.||+|+|||+.++.. +.++..+. ..|...|.+++|+|+
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--------------------------~gh~~~V~sVawSPd 193 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--------------------------AGSKDWVTHIVWYED 193 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--------------------------TTCCCCEEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--------------------------ccccccEEEEEEcCC
Confidence 999999999999999999998752 34433211 224567888999999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEe-ccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
| +++++.|++|++||+.++.......++. +|. ..|.+++|+ |++||+++ +|+|++||+.+++......+|.+
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~ 266 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE 266 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence 9 8889999999999998764222234563 665 679999999 68999987 69999999998887444448999
Q ss_pred CEEEEEE--cCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEe
Q psy307 599 VCISTLW--HPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQF 676 (1019)
Q Consensus 599 ~V~sl~~--sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~ 676 (1019)
.|.+++| +|++ ..+++++.||+ ++|.... +.+.....+.+..+.....|....++.. .+
T Consensus 267 ~V~~va~~~s~d~-~~La~a~edG~-klw~~d~---------------~~~spd~~l~a~~d~~v~lW~~~g~~l~--~~ 327 (588)
T 2j04_A 267 NFHIIPLNHEKES-TILLMSNKTSY-KVLLEDE---------------LHVTADNIIAPYLEKKFKKWSTIWNEFN--NY 327 (588)
T ss_dssp CCCEEEETTCSSC-EEEEECSSCEE-EEEESSS---------------EEEECCCSSHHHHHHHHHHTTTTTTSSS--SS
T ss_pred eEEEEEeeeCCCC-CEEEEEcCCCC-EEEeecc---------------EEECCCceEEEEcCCEEEEEECCCCcee--ee
Confidence 9999999 9998 68999999999 6664331 1222333333334666667766433311 00
Q ss_pred ecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcC-CCchhhHHHHHHhhheeeeeeeccchhhhhh
Q psy307 677 SETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLS-DKNASLEEKTAAEFYCICIVLLNKTWKEMRA 748 (1019)
Q Consensus 677 sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~-d~~i~lw~~~~~e~~~~~i~~~~~~~~~~~a 748 (1019)
-.+..|.+++|||++ +.++++.. +..+-=++...+-.+.++.+-+.+.|..-..
T Consensus 328 ----------------~~~~~I~~va~SPdG--~~lA~~~~i~~~~~~y~i~s~~~~~i~f~pL~~~w~~~~~ 382 (588)
T 2j04_A 328 ----------------ETTLVIHGISLSPDG--YSIAIVYDMERVAFKYKIASEQSFNIMFAPLYHTWTISER 382 (588)
T ss_dssp ----------------CCEEEEEEEEECTTS--SEEEEEEEEECSSCCCCCSSSCCEEEEEEESSSCCCCCTT
T ss_pred ----------------ccceEEEEEEECCCC--CEEEEEEeccCceeEEeeccceEEEEEEEEccchhccCCC
Confidence 014457889999998 44444433 2221111222333455666666666655443
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=299.39 Aligned_cols=265 Identities=19% Similarity=0.264 Sum_probs=207.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEecccCccEeEEEEcCC--CCceeEEEeecCCC
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKS 404 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~ 404 (1019)
+.++.||.+.|++++|+|+ +.+|++|+.||.|+|||+.. ...++..+.+|..+|.+++|+++ +
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~------------- 67 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG------------- 67 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-------------
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-------------
Confidence 4578999999999999996 78999999999999999953 45778889999999999999987 5
Q ss_pred CcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceE--EEE-ecCC
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNT--GTNFISAGYDRYLKLWDTESGECI--SRF-TSRK 478 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i--~~~-~~~~ 478 (1019)
.+|++|+.||.|++||+.... ..+..+.+|...|.+++|+|+ ++.+++|+.||+|++||++++... ..+ .+..
T Consensus 68 -~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 68 -TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp -SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred -CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 799999999999999995543 377888999999999999999 999999999999999999887322 222 2334
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-cceeEEeccccccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL-NRKKTFEGHMVAGY 557 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~-~~~~~l~gh~~~~~ 557 (1019)
.+.++.|+|.... ........+++.+|++|+.||.|++||++++... .....+.+|. +.
T Consensus 147 ~v~~l~~~p~~~~------------------~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~--~~ 206 (753)
T 3jro_A 147 GVNSASWAPATIE------------------EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS--DW 206 (753)
T ss_dssp CEEEEEECCCC---------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS--SC
T ss_pred ceEEEEecCcccc------------------cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC--Cc
Confidence 4555555553110 0000111336899999999999999999875332 3445677777 77
Q ss_pred eEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-----eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccc
Q psy307 558 ACSLDFSPD---MSYLISGDADGKCYIWDWKTTK-----LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDAN 629 (1019)
Q Consensus 558 V~~v~fspd---g~~Lasgs~DG~I~IWDl~t~~-----~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~ 629 (1019)
|.+++|+|+ |.+|++|+.||.|++||+.++. .+.....|.+.|++++|+|++ .++++++.||.|++| +.+
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vw-d~~ 284 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLW-KEN 284 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECC-BCC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEE-ecC
Confidence 999999999 9999999999999999999874 344445688999999999998 689999999999665 443
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.7e-26 Score=269.01 Aligned_cols=256 Identities=21% Similarity=0.431 Sum_probs=218.5
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
+..+++++.|+.|++|+... .+.+.++.+|...|.+++|++ ..|++|+.||.|++||+ ..++++..+.+
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~-~~~~~~~~~~~ 237 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAET-------GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDI-ETGQCLHVLMG 237 (445)
T ss_dssp TTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEES-SSCCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEECCc-------CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEEC-CCCcEEEEEcC
Confidence 67899999999999998763 356889999999999999964 57999999999999999 55677888999
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD 457 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D 457 (1019)
|...|.+++| ++ .++++|+.||.|++||+ ..+.++..+.+|...|.+++| ++.++++++.|
T Consensus 238 ~~~~v~~~~~--~~--------------~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 298 (445)
T 2ovr_B 238 HVAAVRCVQY--DG--------------RRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD 298 (445)
T ss_dssp CSSCEEEEEE--CS--------------SCEEEEETTSCEEEEEG-GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcccEEEEEE--CC--------------CEEEEEcCCCEEEEEEC-CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCC
Confidence 9999999988 44 57999999999999999 567888899999999999999 78999999999
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
++|++||+++++++..+..+. ..+.++. ++++++++|+.||.|++||+
T Consensus 299 ~~i~i~d~~~~~~~~~~~~~~------------------------------~~v~~~~--~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 299 TSIRVWDVETGNCIHTLTGHQ------------------------------SLTSGME--LKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp SCEEEEETTTCCEEEEECCCC------------------------------SCEEEEE--EETTEEEEEETTSCEEEEET
T ss_pred CeEEEEECCCCCEEEEEcCCc------------------------------ccEEEEE--EeCCEEEEEeCCCeEEEEEC
Confidence 999999999999887765432 1222333 35679999999999999999
Q ss_pred cCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee-----eccCCCEEEEEEcCCCCc
Q psy307 538 LNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW-----KAHDGVCISTLWHPHEPS 611 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l-----~~h~~~V~sl~~sp~~~~ 611 (1019)
.++. ....+.++. ....|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .
T Consensus 347 ~~~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 420 (445)
T 2ovr_B 347 KTGQ---CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-L 420 (445)
T ss_dssp TTCC---EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-E
T ss_pred CCCc---EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-E
Confidence 8763 445665521 23779999995 689999999999999999999999888 4788899999999988 6
Q ss_pred EEEEEeCCCc
Q psy307 612 KVVTAGWDAA 621 (1019)
Q Consensus 612 ~l~s~s~Dg~ 621 (1019)
.+++|+.||+
T Consensus 421 ~la~~~~dg~ 430 (445)
T 2ovr_B 421 VCAVGSRNGT 430 (445)
T ss_dssp EEEEECSSSS
T ss_pred EEEEcccCCC
Confidence 8999999998
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=4.8e-27 Score=265.51 Aligned_cols=264 Identities=20% Similarity=0.284 Sum_probs=207.4
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeecc-----CCCCeEEEEEcCCC---CcEEEEeeCCCeEEEEecCCCc
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-----HTKGISAIRWFPKS---AHLLLSCSMDCRVKLWEVYKER 369 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-----H~~~V~~i~fspd~---g~lLaSgs~Dg~I~IWdl~~~~ 369 (1019)
...++.+..++.|.+|+.... +.+..+.+ |...|++++|+|++ +.+|++|+.||.|++||+ ...
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~ 105 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQ-------GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITM 105 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGG-------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTC
T ss_pred CceEEEECCCCEEEEEEcCCC-------cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhc
Confidence 344556666779999987632 22333333 66889999999963 569999999999999999 456
Q ss_pred EEEEEecccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---ccccccEeEEEEe
Q psy307 370 RCVRTYYGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---YGHRQAVRDICFN 445 (1019)
Q Consensus 370 ~~~~~~~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---~~H~~~V~sl~fs 445 (1019)
+++..+.+|...|.+++|+| ++ .+|++|+.||.|++||+ ..+..+..+ .+|...|.+++|+
T Consensus 106 ~~~~~~~~~~~~i~~~~~~~~~~--------------~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 106 QCIKHYVGHGNAINELKFHPRDP--------------NLLLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp CEEEEEESCCSCEEEEEECSSCT--------------TEEEEEETTSCEEEEET-TTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred eEeeeecCCCCcEEEEEECCCCC--------------CEEEEEeCCCeEEEEEe-ecCeEEEEecccccccCceeEEEEC
Confidence 77888999999999999999 66 79999999999999999 556777777 7899999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEe-----------------------------cCCceEEEEEecCCCeeee--
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFT-----------------------------SRKVAYCVKFHPDEDKQHL-- 494 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----------------------------~~~~v~~v~~~p~~~~~~~-- 494 (1019)
|++++|++++.||.|++||+++++....+. ....+.+++|+ +...+.
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 999999999999999999999876543332 44667788887 222222
Q ss_pred --------ccCCC---------------ceeeeCCCCCcccEEEEcCC--CCEEEEEecCCeEEEEEccCccccc-ceeE
Q psy307 495 --------DIPVD---------------MKYIADPTMHSMPAVTSSPN--NKWLACQSMDNKILIFSALNRFKLN-RKKT 548 (1019)
Q Consensus 495 --------~~~~~---------------~~~i~~~~~~~i~~v~~spd--g~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~ 548 (1019)
+.... .......+...+.+++|+|+ +++|++|+.||.|++||+.++.... ....
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 11110 12223345567889999999 9999999999999999998765433 3456
Q ss_pred EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 549 FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 549 l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
+.+|.....|.+++|+|+|++|++|+.||.|+|||+.+
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 77775458899999999999999999999999999853
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=6.2e-27 Score=270.49 Aligned_cols=309 Identities=11% Similarity=0.085 Sum_probs=200.3
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCc---cceeeeccCCCCeEEEEEc-------------------CCCCcEEEEe
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPK---TQVHTWEGHTKGISAIRWF-------------------PKSAHLLLSC 354 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~---~~i~~l~gH~~~V~~i~fs-------------------pd~g~lLaSg 354 (1019)
.+..++..++|+.|.+|............ ..+..+ .|...+.++.|+ |.++.+|++|
T Consensus 29 ~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ 107 (393)
T 4gq1_A 29 SCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACV 107 (393)
T ss_dssp GGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEE
Confidence 34445666678889998654332211111 111111 233344444433 2246689999
Q ss_pred eCCCeEEEEecCCCcE----EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE
Q psy307 355 SMDCRVKLWEVYKERR----CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR 430 (1019)
Q Consensus 355 s~Dg~I~IWdl~~~~~----~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 430 (1019)
+.|++|+|||+..... .+..+.||.+.|.+++|+|... ...+.++++|++|+.|++|+|||+ ..+.++.
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~------~~~~~d~~~las~s~D~tv~~Wd~-~~~~~~~ 180 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYS------ADNRLAEQVIASVGDDCTLIIWRL-TDEGPIL 180 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEEC------TTCSEEEEEEEEEETTSEEEEEEE-ETTEEEE
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccc------cccCCCCCEEEEEECCCeEEEEEC-CCCceee
Confidence 9999999999955432 2345789999999999987210 011223379999999999999999 4556677
Q ss_pred EEccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCC---ceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 431 TYYGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRK---VAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~---~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.+.+|...|.+++|+|++. +|++++.|++|++||+++++......... ...++...+. ..........
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~--------~~~~~~~~~~ 252 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL--------PLVNTCHSSG 252 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG--------GGC------C
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc--------cceeeeeccc
Confidence 7788999999999999875 79999999999999999987765543221 1111111111 1111222345
Q ss_pred CCCcccEEEEc-CCCCEEEEEecCCeEEEEEccCcccccceeEEeccc----------------cccceEEEEEcC--CC
Q psy307 507 TMHSMPAVTSS-PNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM----------------VAGYACSLDFSP--DM 567 (1019)
Q Consensus 507 ~~~~i~~v~~s-pdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~----------------~~~~V~~v~fsp--dg 567 (1019)
+...+.++.|+ |+|+.|++++.|+++++||+..+... ..+..|. ...+.....|+| ++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY---NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC---ceEeeecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 66778888886 89999999999999999999765322 2222221 011122233444 45
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++++|+.||+|+|||+.+++.+..+..|..+|.+++|+|+| ++|++++.||.+ +|.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-~~LA~as~~Gv~-lvr 386 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGSVL-LTR 386 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-SEEEEEESSEEE-EEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCeE-EEE
Confidence 578889999999999999999999999999999999999999 689999877644 553
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=3.5e-26 Score=267.45 Aligned_cols=288 Identities=19% Similarity=0.352 Sum_probs=225.9
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+....+|...|+|++| ++.+|++|+.||.|++||+ ..++++..+.+|...|.+++| ++ .+
T Consensus 126 ~~~~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~--------------~~ 185 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DE--------------RV 185 (435)
T ss_dssp EECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CS--------------SE
T ss_pred EecccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CC--------------CE
Confidence 3445678889999987 3679999999999999999 566788899999999999988 44 68
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
|++|+.||.|++||+ ..++.+..+.+|...|.+++|+ +..+++|+.||+|++||++++......
T Consensus 186 l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~------------- 249 (435)
T 1p22_A 186 IITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR------------- 249 (435)
T ss_dssp EEEEETTSCEEEEES-SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE-------------
T ss_pred EEEEcCCCeEEEEEC-CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee-------------
Confidence 999999999999999 5667889999999999999996 469999999999999999887643211
Q ss_pred CCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 488 DEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.....+...+.++++ ++++|++|+.||.|++||+.++ .....+.+|. ..|.++.| ++
T Consensus 250 --------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~--~~v~~~~~--~~ 306 (435)
T 1p22_A 250 --------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHK--RGIACLQY--RD 306 (435)
T ss_dssp --------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC---CEEEEEECCS--SCEEEEEE--ET
T ss_pred --------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC---cEEEEEcCCC--CcEEEEEe--CC
Confidence 111223445666666 7889999999999999999887 4457778887 67888888 57
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeec
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQF 647 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l 647 (1019)
.++++|+.||.|++||+.+++.+..+.+|...|.+++| ++ .++++|+.||.|++| +..... .+..
T Consensus 307 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vw-d~~~~~--------~~~~--- 371 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVW-DLVAAL--------DPRA--- 371 (435)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEE-EHHHHT--------STTS---
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEE-ECCCCC--------Cccc---
Confidence 89999999999999999999999999999999999999 34 689999999999776 321110 0000
Q ss_pred ccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHHH
Q psy307 648 NQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEKT 727 (1019)
Q Consensus 648 ~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~~ 727 (1019)
..+......+ .-|.+.|.+++|.+. .|++++.||+|++|+..
T Consensus 372 -------------------~~~~~~~~~~---------------~~h~~~v~~l~~~~~----~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 372 -------------------PAGTLCLRTL---------------VEHSGRVFRLQFDEF----QIVSSSHDDTILIWDFL 413 (435)
T ss_dssp -------------------CTTTTEEEEE---------------CCCSSCCCCEEECSS----CEEECCSSSEEEEEC--
T ss_pred -------------------cccchheeec---------------cCCCCCeEEEEeCCC----EEEEEeCCCEEEEEECC
Confidence 0000011111 136778899999443 49999999999999853
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=4.8e-26 Score=261.36 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=211.1
Q ss_pred CCC-CCCeeeeCCCCCceeeecCCCCCCccCCc-cc-----eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC
Q psy307 294 TDY-QGRSFLHPPHDVGTNLRSDTPPDRCFLPK-TQ-----VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~-~gr~~~~~~~D~~v~lw~~~~~~~~~lp~-~~-----i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
+++ +|+.+++++.|+.|++|+........... .. .....+|.+.|++++|+|+++.+|++|+.||.|++||+.
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 566 89999999999999999987543211100 00 011246999999999999778899999999999999994
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
..+....+. +...+.++.+++.+. +..++++|+.||.|++||+ ..+..+..+.+|...|.+++|+|
T Consensus 131 -~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 131 -TLQTADVFN-FEETVYSHHMSPVST-----------KHCLVAVGTRGPKVQLCDL-KSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp -TTEEEEEEE-CSSCEEEEEECSSCS-----------SCCEEEEEESSSSEEEEES-SSSCCCEEECCCCSCEEEEEECS
T ss_pred -CCccceecc-CCCceeeeEeecCCC-----------CCcEEEEEcCCCeEEEEeC-CCcceeeeecCCCCcEEEEEECC
Confidence 455555554 777889998888652 2358999999999999999 55677788999999999999999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCc-eEEEE----------------ecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 447 TGTN-FISAGYDRYLKLWDTESGE-CISRF----------------TSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 447 dg~~-l~S~s~Dg~I~lWDl~t~~-~i~~~----------------~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
++++ |++++.||.|++||++++. ++..+ .+...+.+++|+|++..++.........+++...
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 9984 8899999999999998875 44443 2346789999999987766543333233322211
Q ss_pred ----------------CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 509 ----------------HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 509 ----------------~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
..+........+..+++++.++.|++||+.++ ..+..+.+|. +.|.+++|+|+|++|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHY--KTVDCCVFQSNFQELYS 351 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCS--SCEEEEEEETTTTEEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCC--CeEEEEEEcCCCCEEEE
Confidence 11222333344567777888999999999887 4557788887 77999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEecc
Q psy307 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDA 628 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~ 628 (1019)
|+.||.|++||+.+++.+.....+.. ...+.+.....+.+++.|+.+++|...
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTSCEEEEEECC------------------------------------------
T ss_pred ECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCc
Confidence 99999999999999988776554332 233444444566778888999887443
No 103
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=261.90 Aligned_cols=254 Identities=19% Similarity=0.271 Sum_probs=204.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+.+..+.+|.+.|++++|+|+ ++.+|++|+.||.|++||+.... .
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCC-----cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 35778999999999999999987532 23567889999999999999874 27899999999999999995543 3
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEec-
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNN- 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fsp- 446 (1019)
.+..+.+|...|.+++|+|+ + .+|++++.||.|++||+.... .....+.+|...|.+++|+|
T Consensus 93 ~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 93 QIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EeeeecCCCcceEEEEeCCCCCC--------------CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 67788899999999999998 6 699999999999999996553 34556789999999999999
Q ss_pred ------------CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 447 ------------TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 447 ------------dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
++..|++++.|+.|++||++++....... .....+...+.++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--------------------------STLEGHSDWVRDV 212 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--------------------------EEECCCSSCEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--------------------------EEEecccCcEeEE
Confidence 69999999999999999998765322111 1112344667888
Q ss_pred EEcCC---CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 515 TSSPN---NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 515 ~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
+|+|+ +.+|++++.||.|++||+..+........+........|.+++|+|+|++|++++.||.|++||+.++....
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 88999 899999999999999999876432222333332233779999999999999999999999999998654433
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=3.2e-26 Score=255.57 Aligned_cols=253 Identities=17% Similarity=0.248 Sum_probs=204.1
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCc---
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKER--- 369 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~--- 369 (1019)
++++|+.+++++.|+.|++|+...... ..+.+..+.+|.+.|++++|+|. ++.+|++|+.||.|++||+....
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSC---CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCC---cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 567899999999999999998864321 23567889999999999999995 38899999999999999995432
Q ss_pred -----EEEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE-----EEE------
Q psy307 370 -----RCVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC-----VRT------ 431 (1019)
Q Consensus 370 -----~~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~------ 431 (1019)
+++..+.+|...|.+++|+|+ + .+|++++.||.|++||+...... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLG--------------LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCC--------------cEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 668888999999999999998 7 68999999999999999544311 011
Q ss_pred -EccccccEeEEEEecC---CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 432 -YYGHRQAVRDICFNNT---GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 432 -l~~H~~~V~sl~fspd---g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
..+|...+.+++|+|+ +..+++++.|+.+.+|+...+....... ...+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~h 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK----------------------------LPGH 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE----------------------------CCCC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee----------------------------cCCC
Confidence 1268889999999997 8999999999999888887765422111 1224
Q ss_pred CCcccEEEEcCCC----CEEEEEecCCeEEEEEccCcc------------------------------------------
Q psy307 508 MHSMPAVTSSPNN----KWLACQSMDNKILIFSALNRF------------------------------------------ 541 (1019)
Q Consensus 508 ~~~i~~v~~spdg----~~Lasgs~Dg~I~iwd~~~~~------------------------------------------ 541 (1019)
...|.+++|+|++ ++|++++.||.|++||+....
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN 293 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCS
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccc
Confidence 4567788888887 899999999999999998641
Q ss_pred -cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 542 -KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 542 -~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
....+..+.+|. ..|++++|+|+|++|++|+.||.|+|||+.+++.+..+
T Consensus 294 ~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 294 LQVELLSEHDDHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEEEEEECTTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccEEEEEeccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 113445567776 67999999999999999999999999999988665544
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=4.6e-25 Score=244.52 Aligned_cols=278 Identities=16% Similarity=0.239 Sum_probs=212.9
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEe--cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTY--YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~--~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
+++|+||++ .+|++| .|++|+|||+ .++++++.+ .+|...|.+++|+|++ ++|++|+.||
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~--------------~~l~sgs~Dg 89 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTSSA 89 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEETTS
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCC--------------CEEEEEECCC
Confidence 578999985 366665 5999999999 455666655 4678889999999999 7999999999
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce-EEEEecCCceEEEEEecCCCeeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC-ISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~-i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
+|++||+ ..++++..+.+|...+.++.+ ++..+++++.++.+++|+...+.. +..+.
T Consensus 90 ~v~iw~~-~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------------------- 147 (318)
T 4ggc_A 90 EVQLWDV-QQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLS------------------- 147 (318)
T ss_dssp EEEEEET-TTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE-------------------
T ss_pred cEEEeec-CCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEc-------------------
Confidence 9999999 677889999999998887655 568999999999999999877643 22222
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc-ceeEEeccccccceEEEEEcCCCCE---E
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN-RKKTFEGHMVAGYACSLDFSPDMSY---L 570 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~l~gh~~~~~V~~v~fspdg~~---L 570 (1019)
.+...+..+.+++++++|++++.||.|++||+.++.... .......+. +.|.++.++|++.. +
T Consensus 148 -----------~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 148 -----------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp -----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC--SCEEEEEECTTSTTEEEE
T ss_pred -----------CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC--CceEEEEecCCCCcEEEE
Confidence 233556678888999999999999999999998754322 233344444 67999999997763 3
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE-EeCCCcEEEEeccceeeeeeeccccCCceeeccc
Q psy307 571 ISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT-AGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQ 649 (1019)
Q Consensus 571 asgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s-~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~ 649 (1019)
++|+.+++|++||..+........ |...+..+.|+|++..++++ ++.||.|++| +...
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iw-d~~~------------------- 273 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIW-KYPT------------------- 273 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEE-ETTT-------------------
T ss_pred EecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEE-ECCC-------------------
Confidence 467789999999999888766554 56679999999998544433 3378999776 2211
Q ss_pred ccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 650 TLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 650 ~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
++ ....+. -|.+.|++++|+|++ +.|++++.|++|+||+.
T Consensus 274 -------------------~~-~~~~l~---------------gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 274 -------------------MA-KVAELK---------------GHTSRVLSLTMSPDG--ATVASAAADETLRLWRC 313 (318)
T ss_dssp -------------------CC-EEEEEC---------------CCSSCEEEEEECTTS--SCEEEEETTTEEEEECC
T ss_pred -------------------Cc-EEEEEc---------------CCCCCEEEEEEcCCC--CEEEEEecCCeEEEEEC
Confidence 00 111111 367889999999998 78999999999999985
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-26 Score=258.89 Aligned_cols=271 Identities=10% Similarity=0.031 Sum_probs=204.2
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-----
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK----- 367 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~----- 367 (1019)
...+++..+++++.|+.|++|+.... +.+.++. .+.|.++.|+|. +++|+.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~-------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS-------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS-------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC-------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence 34567889999999999999987632 3345554 567888999985 99999999999998742
Q ss_pred ---CcEEEEEe-cccCccEeEEEEcC--CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE-ccccccEe
Q psy307 368 ---ERRCVRTY-YGHRQAVRDICFNN--TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY-YGHRQAVR 440 (1019)
Q Consensus 368 ---~~~~~~~~-~gh~~~V~~i~fsp--dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~ 440 (1019)
....+..+ .+|...|.+++|+| ++ .++++|+.||+|++||+.. +.+.... ..|...|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNT--------------EYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYS 174 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---C--------------CEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCC
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCC--------------CEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceE
Confidence 22223333 36778899999998 77 7999999999999999954 4445555 45566899
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCceE-EEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC
Q psy307 441 DICFNNTGTNFISAGYDRYLKLWDTESGECI-SRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 441 sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i-~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd 519 (1019)
+++|+|++.+|++|+.||.|++||+++++.+ ..+.. .|...|.+++|+|+
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-----------------------------~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-----------------------------DEEAKIKEVKFADN 225 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-----------------------------CTTSCEEEEEECTT
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-----------------------------cCCCCEEEEEEeCC
Confidence 9999999999999999999999999988765 43332 14467788889999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccCC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
|.+|++++ |+.|++||++.......+..+..|.......+++|+|+|++|++++. |+.|+||++.+....... .
T Consensus 226 g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~ 300 (343)
T 3lrv_A 226 GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----D 300 (343)
T ss_dssp SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----E
T ss_pred CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----c
Confidence 99999999 55999999998754433443333321111146999999999999998 999999999766543332 4
Q ss_pred CEEEEEEcC---CCCcEEEEEeCCCcEEEEe
Q psy307 599 VCISTLWHP---HEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 599 ~V~sl~~sp---~~~~~l~s~s~Dg~I~iww 626 (1019)
++..+.|.+ +. ..+++++.||.+.++.
T Consensus 301 ~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 301 EESALCLQSDTADF-TDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEEECCC----CCC-CEEEEEEETTEEEEEE
T ss_pred CceeEecCcccccc-ceeEEEecCCceEEEE
Confidence 677888988 55 5889999999998764
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=264.20 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=190.2
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCC-CcEEEEEec--ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-ERRCVRTYY--GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~-~~~~~~~~~--gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+|.+.|++++|+|++..++++|+.||.|+|||+.. .+.++..+. .|...|.+++|+|++ .+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------~~l 164 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD--------------TTV 164 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS--------------SEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC--------------CEE
Confidence 367778999999997444459999999999999952 455666665 567899999999998 689
Q ss_pred EEEeCCCcEEEEEccCCCe---EEEEEccccccEeEEEEecC---CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 409 LSCSMDCRVKLWEVYKEHR---CVRTYYGHRQAVRDICFNNT---GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~---~~~~l~~H~~~V~sl~fspd---g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
++|+.||.|++|++..... +...+.+|...|.+++|+|+ +++|++++.|++|++||+++++++..+.
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------- 237 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL------- 237 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC-------
T ss_pred EEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee-------
Confidence 9999999999999954332 33467889999999999999 9999999999999999999887765532
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc----------
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH---------- 552 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh---------- 552 (1019)
..+...|.+++|+ ++++|++++.|+.|++||+.++.. +..+..+
T Consensus 238 ----------------------~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 238 ----------------------FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN---LSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp ----------------------CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE---EEEEECHHHHGGGCCTT
T ss_pred ----------------------cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE---eeeecchhhhhhhhhhc
Confidence 1234567788888 999999999999999999988743 3333321
Q ss_pred -------------ccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCC---ceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 553 -------------MVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW--KTT---KLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 553 -------------~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl--~t~---~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
.....+.+++|+|++++|++++ .|+.|+|||+ .++ +.+..+..| +.|.+++|+|++ ++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~ 368 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQ 368 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EE
Confidence 1124688999999999999998 8999999999 665 677788888 789999999953 55
Q ss_pred EEEeC
Q psy307 614 VTAGW 618 (1019)
Q Consensus 614 ~s~s~ 618 (1019)
++++.
T Consensus 369 v~~~~ 373 (450)
T 2vdu_B 369 VTLDN 373 (450)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 55543
No 108
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-25 Score=243.83 Aligned_cols=263 Identities=18% Similarity=0.194 Sum_probs=215.9
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC--cEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE--RRCVR 373 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~--~~~~~ 373 (1019)
++|+.+++++.|+.|++|+... .+....+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++... .+.+.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDD-------QWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESS-------SEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred cCCCEEEEEEcCCcEEEEECCC-------CEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 6788999999999999998752 3567888999999999999995 889999999999999998643 35677
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFI 452 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~ 452 (1019)
.+.+|...|.+++| ++ .+|++++.||.|++|| .......+..|...|.+++|+| ++..++
T Consensus 99 ~~~~~~~~i~~~~~--~~--------------~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QD--------------GVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EECCCSSCEEEEEE--ET--------------TEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred chhhcccCEEEEEe--cC--------------CEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 88999999999998 33 5899999999999999 6778888999999999999998 899999
Q ss_pred EEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCCCeeee---------ccC-CCceeeeCCCCCcccEEEEcCCC
Q psy307 453 SAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDEDKQHL---------DIP-VDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~---------~~~-~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
+++.||.|++|| .++....+. ....+.+++|+|++..... +.. .........+...+.+++|+|++
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 999999999999 455666665 4578899999998772211 221 11222334567789999999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
.|++++.||.|++||+.++ .....+..|. ..|.+++|+|+|+ +++++.||.|++||+.+++......
T Consensus 238 -~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENG---SLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp -CEEEEETTSEEEEECTTTC---CEEEEEECSS--SCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred -CEEEEecCCEEEEEECCCC---ceeEEEeccC--ceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 6889999999999999887 4456777776 6799999999998 5678999999999999987765543
No 109
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=3.1e-25 Score=258.25 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=203.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++++|+.+++|+.|+.|++|+... .+++.++.+|...|.+++++ +.+|++|+.|+.+++||.......+
T Consensus 154 ~fspdg~~lasgs~Dg~v~iWd~~~-------~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 154 AWIKEGNYLAVGTSSAEVQLWDVQQ-------QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred EECCCCCEEEEEECCCeEEEEEcCC-------CcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceee
Confidence 4678999999999999999998763 46788999999999999985 4699999999999999998778888
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEccccccEeEEEEecCCC
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGT 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~ 449 (1019)
..+.+|...+..+.++|++ .++++++.|+.|++|+..... ..+.....|.+.|.+++|+|.+.
T Consensus 224 ~~~~~h~~~~~~~~~~~~g--------------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~ 289 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDG--------------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289 (420)
T ss_dssp EEEECCSSCEEEEEECTTS--------------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT
T ss_pred EEecccccceeeeeecCCC--------------CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc
Confidence 9999999999999999998 699999999999999995443 34677888999999999999766
Q ss_pred E-EEEE--EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 450 N-FISA--GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 450 ~-l~S~--s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
. ++++ +.|++|++||+.+++++..+..+..+.+ +.++|+++.++++
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~-------------------------------~~~~~~~~~lv~~ 338 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-------------------------------ILWSPHYKELISG 338 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEE-------------------------------EEEETTTTEEEEE
T ss_pred cEEEEEeecCCCEEEEEeCCccccceeeccccceee-------------------------------eeecCCCCeEEEE
Confidence 4 4443 4799999999999999888776655544 4455666777765
Q ss_pred e--cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEE
Q psy307 527 S--MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 527 s--~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl 603 (1019)
+ .||.|+|||+.++ ..+..+.+|. +.|.+++|+|||++|+||+.||+|+|||+....+....+.+...+...
T Consensus 339 sg~~d~~I~iwd~~~~---~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~ 412 (420)
T 4gga_A 339 HGFAQNQLVIWKYPTM---AKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKS 412 (420)
T ss_dssp ECTTTCCEEEEETTTC---CEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-------------
T ss_pred EecCCCEEEEEECCCC---cEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccc
Confidence 4 7899999999887 4567889997 779999999999999999999999999998877766666555444333
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=5.4e-24 Score=244.11 Aligned_cols=273 Identities=8% Similarity=0.092 Sum_probs=213.6
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH 378 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh 378 (1019)
..++++..|+.|++|+... .+++..+.+|. .+.+++|+|++..++++++.|+.|++||+ ..++++..+..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~-~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT-ATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET-TTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCC-------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC-CCCeEEEEEECC
Confidence 4678889999999998753 35677788776 58999999975556688889999999999 556777777665
Q ss_pred CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcC
Q psy307 379 RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYD 457 (1019)
Q Consensus 379 ~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~D 457 (1019)
. .+.+++|+|++. .++++++.++.|++||+ ..++.+..+..| ..+.+++|+|+++.+ ++++.|
T Consensus 74 ~-~v~~~~~spdg~-------------~l~~~~~~~~~v~v~d~-~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 74 S-SPQGVAVSPDGK-------------QVYVTNMASSTLSVIDT-TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp S-SEEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred C-CccceEECCCCC-------------EEEEEECCCCEEEEEEC-CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 5 899999999883 34456667899999999 556666666654 468999999999987 677789
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEE
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFS 536 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd 536 (1019)
+.|++||+.+++++..+..+..+ ..++|+|+++++ ++++.++.|++||
T Consensus 138 ~~v~~~d~~~~~~~~~~~~~~~~-------------------------------~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 138 KTVSVINTVTKAVINTVSVGRSP-------------------------------KGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp TEEEEEETTTTEEEEEEECCSSE-------------------------------EEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCcEEEEEecCCCc-------------------------------ceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 99999999999887776654433 355667778777 5777889999999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD---ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs---~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
+.++. ....+..+ ..+.+++|+|+|++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++..++
T Consensus 187 ~~~~~---~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 187 TVTNS---VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVY 259 (391)
T ss_dssp TTTTE---EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEE
T ss_pred CCCCe---EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEE
Confidence 98763 23344332 4688999999999999888 68999999999999999988776 478999999986555
Q ss_pred EEEeCCCcEEEEeccceeeeee
Q psy307 614 VTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
++++.|+.|++ |+....+...
T Consensus 260 ~s~~~d~~v~v-~d~~~~~~~~ 280 (391)
T 1l0q_A 260 VALSFXNTVSV-IDTATNTITA 280 (391)
T ss_dssp EEETTTTEEEE-EETTTTEEEE
T ss_pred EEcCCCCEEEE-EECCCCcEEE
Confidence 78889999866 4555444433
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.3e-24 Score=240.31 Aligned_cols=259 Identities=12% Similarity=0.128 Sum_probs=184.4
Q ss_pred eEEEEEcCCCC-c-EEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCcee------------EEEeec
Q psy307 338 ISAIRWFPKSA-H-LLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFI------------SAIRWF 401 (1019)
Q Consensus 338 V~~i~fspd~g-~-lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~v------------s~i~~~ 401 (1019)
|.++.|-..+. . .+++++ ...|++|+..... ++++++.+|..+|..+.+.||...++ .+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666644322 2 445554 5799999995542 88999999999999999999766553 346677
Q ss_pred CCC---CcEEEEEe--------------------CCCcEEEEEccCCCeEEEEEccccccEeEEEEec---CCCEEEEEE
Q psy307 402 PKS---AHLLLSCS--------------------MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN---TGTNFISAG 455 (1019)
Q Consensus 402 p~~---~~~L~sgs--------------------~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp---dg~~l~S~s 455 (1019)
|++ ...+++++ .|+.|++|++...++.+..+.+|...+..++|++ ++..|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 761 23333333 3999999999887888899999999999999999 779999999
Q ss_pred cCCeEEEEECCCCceEEEEecCC----ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCC
Q psy307 456 YDRYLKLWDTESGECISRFTSRK----VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDN 530 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~----~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg 530 (1019)
.|++|+|||+.+|+++.++..+. .+.+++|+|++...+... ++.+ ..+++|+.|+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s--------------------~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS--------------------HPCAKESESLRSPVF 260 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------------------------CCE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec--------------------cCCCcceeeccCCCc
Confidence 99999999999999999997432 345566777654221100 1111 2367899999
Q ss_pred eEEEEEccCcccccceeEE-----eccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEE-EEE
Q psy307 531 KILIFSALNRFKLNRKKTF-----EGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCI-STL 604 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l-----~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~-sl~ 604 (1019)
+|++||..++..+ ..+ .+|. +.+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. +++
T Consensus 261 tIklWd~~tgk~l---~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 261 QLIVINPKTTLSV---GVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp EEEEEETTTTEEE---EEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred EEEEEECCCCEEE---EEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 9999999877433 222 3554 33444444 488999999999999999999999999999987655 589
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|+| .+|++|+.|++|++|
T Consensus 334 fSPDG-~~LaSGS~D~TIklW 353 (356)
T 2w18_A 334 WSGTD-SHLLAGQKDGNIFVY 353 (356)
T ss_dssp ECSSS-SEEEEECTTSCEEEE
T ss_pred ECCCC-CEEEEEECCCcEEEe
Confidence 99998 699999999999887
No 112
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.8e-25 Score=255.69 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=178.1
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccC--CccceeeeccCCCCeEEEEEcCCCCcEEE--EeeCCCeEEEEecCCCcEEEE
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFL--PKTQVHTWEGHTKGISAIRWFPKSAHLLL--SCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~l--p~~~i~~l~gH~~~V~~i~fspd~g~lLa--Sgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+..++.+..|..+++|+......... ..........+...|.+++|+|| |++|+ +++.|++|+|||+ ...+++.
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~-~~~~~~~ 171 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDP-SDLTEKF 171 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT-SSCEEEEESCSSCEEEEEET-TTTEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC-CCEEEEEECCCCCEEEEeEC-CCCcEEE
Confidence 34456667788888887653321111 11112223455667999999997 66654 5568999999999 4556666
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
.+. |...|.+++|+|+| ++|++++.++ +++|+........ ....+|...|.+++|+|+++.++
T Consensus 172 ~~~-~~~~V~~v~fspdg--------------~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDG--------------KVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEE-CSSCCCEEEECTTS--------------SEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EeC-CCCceEEEEEccCC--------------ceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 664 77889999999999 6888888555 5555554444433 44567999999999999999999
Q ss_pred EEEcCC----eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec
Q psy307 453 SAGYDR----YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM 528 (1019)
Q Consensus 453 S~s~Dg----~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~ 528 (1019)
+++.|+ .+++||+..+....... .....+...|.+++|+|+|++||+|+.
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~--------------------------~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRS--------------------------KQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEE--------------------------EEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred EEecCCcceeEEeecccccceecceee--------------------------eeecCCCCCeEeEEECCCCCceEEEcC
Confidence 999987 68889877654321110 111234466888999999999999999
Q ss_pred CCeEEEEEccCcccccceeE-EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 529 DNKILIFSALNRFKLNRKKT-FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~-l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
|++|+|||+.++ ..+.. +.+|. ..|++++|||||++||+|+.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~---~~~~~~~~gH~--~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDL---SMSKIFKQAHS--FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTT---EEEEEETTSSS--SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCC---cEEEEecCccc--CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999887 33455 46787 77999999999999999999999999999643
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=2e-25 Score=260.87 Aligned_cols=273 Identities=16% Similarity=0.228 Sum_probs=206.8
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---------CeEEEEEccccccEeEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---------HRCVRTYYGHRQAVRDIC 443 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---------~~~~~~l~~H~~~V~sl~ 443 (1019)
....+|.+.|++++|+|++. .+|++|+.||.|++||+... ......+.+|...|.+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~-------------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNA-------------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp EEEEEESSCCSEEEEETTEE-------------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred EEEEcCCCcEEEEEECCCCC-------------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 44567888888888888632 78999999999999999652 567788899999999999
Q ss_pred EecCCC-EEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCC
Q psy307 444 FNNTGT-NFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNK 521 (1019)
Q Consensus 444 fspdg~-~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~ 521 (1019)
|+|++. +|++|+.||+|++||+.++....... ........+...|.+++|+| ++.
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~~~ 245 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVI-----------------------DAKNIFTGHTAVVEDVAWHLLHES 245 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE-----------------------ECSEEECCCSSCEEEEEECSSCTT
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee-----------------------ccceeecCCCCCEeeeEEeCCCCC
Confidence 999998 99999999999999998743110000 00112234556788899998 678
Q ss_pred EEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-CceeeeeeccCCC
Q psy307 522 WLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS-YLISGDADGKCYIWDWKT-TKLFKKWKAHDGV 599 (1019)
Q Consensus 522 ~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~-~Lasgs~DG~I~IWDl~t-~~~l~~l~~h~~~ 599 (1019)
+|++++.||.|++||+++.........+..|. ..|.+++|+|++. ++++|+.||.|++||+++ +.++..+.+|.+.
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 99999999999999999764334556677776 6799999999997 689999999999999998 5678899999999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCCCceeEEEeecC
Q psy307 600 CISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSET 679 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~ 679 (1019)
|.+++|+|++..++++++.||+|++|.-....... ..... .. .+......+
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------~~~~~-~~--------~~~~~~~~~--- 374 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----------------STEDA-ED--------GPPELLFIH--- 374 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC-----------------CHHHH-HH--------CCTTEEEEC---
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc-----------------Ccccc-cc--------CCcceEEEc---
Confidence 99999999997789999999999776322211000 00000 00 001111111
Q ss_pred CCceEEeccccccccCCceEEEEecCCccHH-HHHhhcCCCchhhHHH
Q psy307 680 NNKNYITEKNRNEIKNGSVLRLAFSASKTAD-DILSKLSDKNASLEEK 726 (1019)
Q Consensus 680 ~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~-~Ilt~~~d~~i~lw~~ 726 (1019)
.-|.+.|.+++|+|++ + .|+++..|+.|++|+.
T Consensus 375 ------------~~h~~~v~~~~~~p~~--~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 375 ------------GGHTAKISDFSWNPNE--PWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp ------------CCCSSCEEEEEECSSS--TTEEEEEETTSEEEEEEE
T ss_pred ------------CCCCCCceEEEECCCC--CCEEEEEECCCCEEEeEc
Confidence 1356789999999998 5 7889999999999984
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=7.5e-24 Score=246.42 Aligned_cols=296 Identities=13% Similarity=0.116 Sum_probs=229.0
Q ss_pred eeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE-----Ee
Q psy307 301 FLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR-----TY 375 (1019)
Q Consensus 301 ~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~-----~~ 375 (1019)
++.+..++.+.+|....... ..+.+..+..|. .+.+++|+| ++.++++++.|+.|++||+.. ++... .+
T Consensus 92 ~~~~~~~~~~~l~~~d~~~~---~~~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~ 165 (433)
T 3bws_A 92 RIRKPEELNEKLIALDKEGI---THRFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKY 165 (433)
T ss_dssp EESSGGGGTTCEEECCBTTC---SEEEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHH
T ss_pred eecccCCCceEEEEECCCCC---cceEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccc
Confidence 34566677677776543211 124455666654 466999999 689999999999999999944 45555 45
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG 455 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s 455 (1019)
.+|...|.+++|++++ .++++++.|+.|++||+ ..++.+..+..|...+.+++|+|+++.+++++
T Consensus 166 ~~~~~~v~~~~~~~~~--------------~~~~s~~~d~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 166 KKKLGFVETISIPEHN--------------ELWVSQMQANAVHVFDL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp HTTCCEEEEEEEGGGT--------------EEEEEEGGGTEEEEEET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEEcCCC--------------EEEEEECCCCEEEEEEC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 5888999999999888 78999999999999999 56677788889999999999999999886555
Q ss_pred -cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccC--------CCceeeeCC----------CCCcccEEEE
Q psy307 456 -YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIP--------VDMKYIADP----------TMHSMPAVTS 516 (1019)
Q Consensus 456 -~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~--------~~~~~i~~~----------~~~~i~~v~~ 516 (1019)
.|+.|++||+++++.+..+..+..+.+++|+|++...++... .....+.+. +...+..++|
T Consensus 231 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 310 (433)
T 3bws_A 231 WISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVS 310 (433)
T ss_dssp TTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEE
Confidence 799999999999999999988888999999999876655321 111112221 1235678999
Q ss_pred cCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC---------------CCeEE
Q psy307 517 SPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA---------------DGKCY 580 (1019)
Q Consensus 517 spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~---------------DG~I~ 580 (1019)
+|+++.+ ++++.|+.|++||+.++.. ...+. +. ..+.+++|+|+|++|++++. ||.|+
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~~~~---~~~~~-~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKEKKV---QKSIP-VF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTTTEE---EEEEE-CS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred CCCCCEEEEEecCCCEEEEEECCCCcE---EEEec-CC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 9999755 6668999999999987632 33443 22 56889999999999888876 57999
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+||+.+++.+..+..+ ..+.+++|+|++. ++++++ .|++|.+|
T Consensus 385 ~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 385 VIDTTTDTVKEFWEAG-NQPTGLDVSPDNR-YLVISDFLDHQIRVY 428 (433)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSC-EEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEEecCC-CCCceEEEcCCCC-EEEEEECCCCeEEEE
Confidence 9999999999888764 4789999999984 666655 59999776
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=6.4e-24 Score=241.67 Aligned_cols=270 Identities=10% Similarity=0.111 Sum_probs=189.1
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+.++.+|.+.|++++|+|+ +.+|++|+.|| ++||++. ......... ...+..+++.+++.
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~-~~~~~~~~~--~~~~~~~~~~~~~~------------ 71 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVH-PVAHIMSQE--MRHLSKVRMLHRTN------------ 71 (355)
T ss_dssp ----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEET-TEEEEEEEE--CSCCCEEEECTTSS------------
T ss_pred cCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecC-Ccceeeeee--cCCeEEEEEcCCCC------------
Confidence 3456678999999999999996 78999888775 7899984 344333322 22466666666652
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCC-ceEEEEecCCceEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESG-ECISRFTSRKVAYCV 483 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~-~~i~~~~~~~~v~~v 483 (1019)
.++++|+.|++|++||+ ..++++..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+
T Consensus 72 -~~~~~~~~d~~v~iWd~-~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~ 143 (355)
T 3vu4_A 72 -YVAFVTGVKEVVHIWDD-VKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVC 143 (355)
T ss_dssp -EEEEECSSTTEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEE
T ss_pred -EEEEEECCccEEEEEEC-CCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceE
Confidence 45577888999999999 5566777665 67799999998754 4443 5899999999988 55444433 22222
Q ss_pred EEe----------cCCCeeeeccCCCc-----------------eeeeCCCCCcccEEEEcCCCCEEEEEecCCe-EEEE
Q psy307 484 KFH----------PDEDKQHLDIPVDM-----------------KYIADPTMHSMPAVTSSPNNKWLACQSMDNK-ILIF 535 (1019)
Q Consensus 484 ~~~----------p~~~~~~~~~~~~~-----------------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~-I~iw 535 (1019)
+++ .++...+++..... ......|...|.+++|+|+|++|++|+.||+ |++|
T Consensus 144 ~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 144 EFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 222 23334444443322 3445678889999999999999999999998 9999
Q ss_pred EccCcccccceeEEe-c-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eeee-----------------
Q psy307 536 SALNRFKLNRKKTFE-G-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLF--KKWK----------------- 594 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~-g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l--~~l~----------------- 594 (1019)
|+.++ ..+..+. + |. +.|.+++|+|+|++|++|+.||+|+|||+..+... ..+.
T Consensus 224 d~~~~---~~~~~~~~g~h~--~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 224 KTEDG---VLVREFRRGLDR--ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp ETTTC---CEEEEEECTTCC--SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred ECCCC---cEEEEEEcCCCC--CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 99987 3456676 4 65 77999999999999999999999999999765321 1110
Q ss_pred ----ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 ----AHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ----~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+......++|++++ ..+++++.||.+.+|
T Consensus 299 ~~~~~~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 299 KLSVDKHVRGCKIAWISES-SLVVVWPHTRMIETF 332 (355)
T ss_dssp ECCCCTTCCCCEEEESSSS-EEEEEETTTTEEEEE
T ss_pred EeccCCCCCceEEEEeCCC-CEEEEEeCCCeEEEE
Confidence 111233668999998 689999999998776
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.6e-24 Score=242.12 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=171.0
Q ss_pred CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC--
Q psy307 347 SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-- 424 (1019)
Q Consensus 347 ~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-- 424 (1019)
++.+|++|+.||+|++||+.. ++.+..+. ...|.++.| +|. +++|+.|++|++|+...
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~--~~~v~~~~~-------------~~~----~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKD-SKTITTIT--TPNPRTGGE-------------HPA----IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESS-SSCEEEEE--EECCCTTCC-------------CCS----EEEECSTTEEEEEETTTEE
T ss_pred CCCEEEEECCCCcEEEEECCC-CcEEEEEe--cCCceeeee-------------CCc----eEEecCCCeEEEEEccCce
Confidence 378999999999999999944 44455444 234444444 343 89999999999997642
Q ss_pred ------CCeEEEE-EccccccEeEEEEec--CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 425 ------EHRCVRT-YYGHRQAVRDICFNN--TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 425 ------~~~~~~~-l~~H~~~V~sl~fsp--dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
....+.. ..+|.+.|.+++|+| ++++|++++.||+|++||+++++++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------- 167 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------- 167 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-------------------
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-------------------
Confidence 2332333 347788999999999 999999999999999999999887544322
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-cccccceEEEEEcCCCCEEEEEe
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.+...+.+++|+|+|.+|++|+.||.|++||++++... ...+.+ |. +.|.+++|+|+|.+|++|+
T Consensus 168 ----------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~--~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 168 ----------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA--SSRFPVDEE--AKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp ----------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC--CEECCCCTT--SCEEEEEECTTSSEEEEEE
T ss_pred ----------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC--ccEEeccCC--CCEEEEEEeCCCCEEEEEe
Confidence 12245788999999999999999999999999987322 145566 76 7899999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeec---cCCCEE--EEEEcCCCCcEEEEEeC-CCcEEEE
Q psy307 575 ADGKCYIWDWKTTKLFKKWKA---HDGVCI--STLWHPHEPSKVVTAGW-DAATAKV 625 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~---h~~~V~--sl~~sp~~~~~l~s~s~-Dg~I~iw 625 (1019)
|+.|+|||+++++.+..+.. |...+. +++|+|++ .++++++. |+.|++|
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIY 288 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEE
Confidence 55999999999987766554 444444 69999998 68888888 9998776
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.3e-25 Score=274.71 Aligned_cols=250 Identities=20% Similarity=0.257 Sum_probs=202.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCC-CcEEEEeeCCCeEEEEecCCCc-E
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKS-AHLLLSCSMDCRVKLWEVYKER-R 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~-g~lLaSgs~Dg~I~IWdl~~~~-~ 370 (1019)
.++++|+.+++++.|+.|++|+.... ..+.+.++.+|.+.|++++|+|+. +.+|++|+.||.|++||+.... .
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~-----~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~ 90 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGE-----THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 90 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETT-----EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCC-----CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc
Confidence 46788999999999999999987532 235678999999999999999853 7899999999999999995542 3
Q ss_pred EEEEecccCccEeEEEEcCC--CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEec-
Q psy307 371 CVRTYYGHRQAVRDICFNNT--GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNN- 446 (1019)
Q Consensus 371 ~~~~~~gh~~~V~~i~fspd--g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fsp- 446 (1019)
.+..+.+|...|.+++|+|+ + .++++|+.||.|++||+.... .....+.+|...|.+++|+|
T Consensus 91 ~~~~~~~h~~~V~~v~~sp~~~~--------------~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 91 QIAVHAVHSASVNSVQWAPHEYG--------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEEECCCSSCEEEEEECCGGGC--------------SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred ccccccCCCCCeEEEEECCCCCC--------------CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 67788899999999999998 6 799999999999999996552 34556788999999999999
Q ss_pred ------------CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 447 ------------TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 447 ------------dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
++..|++|+.||+|++||++++....... .....|...|.++
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------------------------~~~~~h~~~V~~l 210 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--------------------------STLEGHSDWVRDV 210 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--------------------------EEECCCSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee--------------------------eeecCCCCcEEEE
Confidence 58999999999999999998764221110 1112345678888
Q ss_pred EEcCC---CCEEEEEecCCeEEEEEccCcccccc--eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 515 TSSPN---NKWLACQSMDNKILIFSALNRFKLNR--KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 515 ~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~--~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
+|+|+ +.+|++++.||.|++||+.++..... .....+|. +.|.+++|+|+|++|++|+.||.|+|||+.++..
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP--DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS--SCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC--CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 88999 89999999999999999987532211 12222343 6789999999999999999999999999986543
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=4.9e-25 Score=254.53 Aligned_cols=256 Identities=9% Similarity=0.074 Sum_probs=178.7
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcC-------CCCcEEEEeeCCCeEEEEecC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFP-------KSAHLLLSCSMDCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fsp-------d~g~lLaSgs~Dg~I~IWdl~ 366 (1019)
....++.+++++.|++|+||+...... .....+.++.||++.|++|+|+| .++++|+|||.|++|+|||+.
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~--~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETI--ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEE--EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCcc--ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 455677899999999999998764321 12235667899999999999987 237899999999999999994
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE-----------------
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV----------------- 429 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~----------------- 429 (1019)
. ..++..+.+|...|.+++|+|++. .+|++|+.||+|++||+.......
T Consensus 175 ~-~~~~~~~~~~~~~v~~v~~~p~~~-------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 175 D-EGPILAGYPLSSPGISVQFRPSNP-------------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp T-TEEEEEEEECSSCEEEEEEETTEE-------------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred C-CceeeeecCCCCCcEEEEECCCCC-------------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 4 456667778889999999998773 589999999999999995443211
Q ss_pred -------EEEccccccEeEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEEecCCCeeeeccCCCc
Q psy307 430 -------RTYYGHRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKFHPDEDKQHLDIPVDM 500 (1019)
Q Consensus 430 -------~~l~~H~~~V~sl~fs-pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~~p~~~~~~~~~~~~~ 500 (1019)
....+|...|.++.|+ ++++.|++++.|+++++||+.++.....+..+ ..+..+.+.|+....
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 312 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI-------- 312 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE--------
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc--------
Confidence 1234688889999987 79999999999999999999988776666433 334444444442211
Q ss_pred eeeeCCCCCcccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe
Q psy307 501 KYIADPTMHSMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 501 ~~i~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
... .......++| ++.++++|+.||.|++||+.++. ....+.+|. ..|.+++|+|||++||+++.+|
T Consensus 313 ----~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~--~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 313 ----SLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp ----CSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred ----ccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence 111 1222333443 45567788899999999998773 335555665 6799999999999999998777
Q ss_pred EEEEeC
Q psy307 579 CYIWDW 584 (1019)
Q Consensus 579 I~IWDl 584 (1019)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555654
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-25 Score=260.49 Aligned_cols=299 Identities=9% Similarity=0.047 Sum_probs=205.1
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
+.-...|.+|+|+|| |+++||++.|++|+ |. ... ..+.+|.+.|.+++|+|+|
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~---~~l~gh~~~v~~V~FsPdg-------------------- 64 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYA---KDINCNSKNLFHVKEFPLE-------------------- 64 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCC---SCCSSBGGGTEEEEEECCC--------------------
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-ccc---ceecCCCccEEEEEECCCC--------------------
Confidence 344578999999996 89999999999999 65 222 3447999999999999987
Q ss_pred eCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
.++.+.+|+.. .. ..+. .|...|.+++|||+|.+|++++.||+|++||..+ ++..+. +..
T Consensus 65 -~~~~~~~~~~~-~~---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~----------- 125 (588)
T 2j04_A 65 -FENKLDFELAQ-QN---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG----------- 125 (588)
T ss_dssp -CCCTTTTSCCC-SS---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS-----------
T ss_pred -CcceEEEEeCC-Cc---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC-----------
Confidence 35555555541 11 1222 5688899999999999999999999999999543 333332 110
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc----cceeEE----eccccccceEEEE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL----NRKKTF----EGHMVAGYACSLD 562 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~----~~~~~l----~gh~~~~~V~~v~ 562 (1019)
......+.+++|||+|++|++|+.||+|++||+.++... ..+.++ .+|. ..|.+++
T Consensus 126 --------------~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~--~~V~sVa 189 (588)
T 2j04_A 126 --------------NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK--DWVTHIV 189 (588)
T ss_dssp --------------CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC--CCEEEEE
T ss_pred --------------ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc--ccEEEEE
Confidence 001135778999999999999999999999999876321 124565 4554 6899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCce---eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKL---FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~---l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
|+||| +++++.|++|++||+.+++. .++++ +|...|.+++|+ + ..+++++ +|+|++| +..-.+......
T Consensus 190 wSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLW-d~~~~~~~~~~~ 262 (588)
T 2j04_A 190 WYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKI-DLKNYSISSLKT 262 (588)
T ss_dssp EETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEE-ETTTTEEEEEEC
T ss_pred EcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEE-ECCCCeEEEEEc
Confidence 99999 88889999999999988774 35674 788899999999 4 5888887 6888665 444333322211
Q ss_pred ccCCceeecccccccchhhhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCC
Q psy307 639 KQVPQLYQFNQTLTLSSIIQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSD 718 (1019)
Q Consensus 639 ~~v~ql~~l~~~~~LSs~~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d 718 (1019)
++...+.. +.+. .-+++...+..+.++. .+|... .++++|++ +.+++ .|
T Consensus 263 gh~~~V~~----va~~----------~s~d~~~La~a~edG~--klw~~d-----------~~~~spd~--~l~a~--~d 311 (588)
T 2j04_A 263 GSLENFHI----IPLN----------HEKESTILLMSNKTSY--KVLLED-----------ELHVTADN--IIAPY--LE 311 (588)
T ss_dssp SCCSCCCE----EEET----------TCSSCEEEEECSSCEE--EEEESS-----------SEEEECCC--SSHHH--HH
T ss_pred CCCceEEE----EEee----------eCCCCCEEEEEcCCCC--EEEeec-----------cEEECCCc--eEEEE--cC
Confidence 22222111 1110 0012222333333332 344422 27799999 33333 49
Q ss_pred CchhhHHHHHHh
Q psy307 719 KNASLEEKTAAE 730 (1019)
Q Consensus 719 ~~i~lw~~~~~e 730 (1019)
+++++|++-..+
T Consensus 312 ~~v~lW~~~g~~ 323 (588)
T 2j04_A 312 KKFKKWSTIWNE 323 (588)
T ss_dssp HHHHHTTTTTTS
T ss_pred CEEEEEECCCCc
Confidence 999999964444
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.6e-24 Score=249.42 Aligned_cols=242 Identities=13% Similarity=0.117 Sum_probs=186.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE--EEEEecccC----------------------------------
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR--CVRTYYGHR---------------------------------- 379 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~--~~~~~~gh~---------------------------------- 379 (1019)
.++.+++|+|+ |.+|+++ .++.|++||+.++.. .+..+..+.
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 47899999997 5655554 588999999854431 445554332
Q ss_pred --------------------ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEc--ccc
Q psy307 380 --------------------QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYY--GHR 436 (1019)
Q Consensus 380 --------------------~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~--~H~ 436 (1019)
..|.+++|+|++ ..++++|+.||.|++||+.. .+.++..+. .|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-------------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-------------SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTS-------------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCC-------------CEEEEEECCCCeEEEEECcCCCCceeeeeecccCC
Confidence 245555555555 34469999999999999952 556666665 567
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
..|.+++|+|++++|++++.||.|++|++.++..... .......+...|.+++|
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~--------------------------~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF--------------------------TQEPILGHVSMLTDVHL 203 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------CCCCSEECSSCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------cceeeecccCceEEEEE
Confidence 8999999999999999999999999999987653210 00011124456788889
Q ss_pred cCC---CCEEEEEecCCeEEEEEccCcccccceeE-EeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 517 SPN---NKWLACQSMDNKILIFSALNRFKLNRKKT-FEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 517 spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~-l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
+|+ +++|++++.|+.|++||+.++. .... +.+|. +.|.+++|+ +|++|++|+.||+|+|||+.+++++..
T Consensus 204 sp~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~~h~--~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 204 IKDSDGHQFIITSDRDEHIKISHYPQCF---IVDKWLFGHK--HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp EECTTSCEEEEEEETTSCEEEEEESCTT---CEEEECCCCS--SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred cCCCCCCcEEEEEcCCCcEEEEECCCCc---eeeeeecCCC--CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 999 9999999999999999998763 3344 45776 779999999 999999999999999999999999888
Q ss_pred eecc-------------------------CCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 593 WKAH-------------------------DGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 593 l~~h-------------------------~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+..+ ...|.+++|+|++ .++++++ .|+.|++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIIL 335 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEE
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEE
Confidence 8633 3578999999988 5777777 89999776
No 121
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=2e-23 Score=235.64 Aligned_cols=288 Identities=14% Similarity=0.150 Sum_probs=210.9
Q ss_pred CCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccC-CCeEEEEEccccccEeEEEEe
Q psy307 367 KERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYK-EHRCVRTYYGHRQAVRDICFN 445 (1019)
Q Consensus 367 ~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~l~~H~~~V~sl~fs 445 (1019)
...+.+..+.+|...|++++|+|++. ++.+|++|+.||.|++||+.. .......+.+|...|.+++|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~-----------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTL-----------PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTS-----------SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred CCcceeEeccCCCCceEEEEEcCCCC-----------CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence 34456778899999999999999830 016999999999999999976 444448899999999999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEE--ecCCCeeeeccCCCceeeeCCCCCc--------ccEEE
Q psy307 446 NTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKF--HPDEDKQHLDIPVDMKYIADPTMHS--------MPAVT 515 (1019)
Q Consensus 446 pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~--~p~~~~~~~~~~~~~~~i~~~~~~~--------i~~v~ 515 (1019)
|++++|++++.||.|++||+++++++....+...+.++.| +|++..++.........+++..... -...+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 175 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC 175 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence 9999999999999999999999999888888888999999 6666544443322223333221111 12333
Q ss_pred EcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC---c
Q psy307 516 SSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY----LISGDADGKCYIWDWKTT---K 588 (1019)
Q Consensus 516 ~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~----Lasgs~DG~I~IWDl~t~---~ 588 (1019)
+.+.+..+++++.++.+.+|++...... ..... ......+.++++.+++.. +++|+.||.|++||+... .
T Consensus 176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 176 ADVIYPMAVVATAERGLIVYQLENQPSE--FRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp EEEETTEEEEEEGGGCEEEEECSSSCEE--EEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred EEecCCeeEEEeCCCcEEEEEeccccch--hhhcc-ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence 4444567888888999999998764221 11111 111233556666655544 999999999999999987 5
Q ss_pred eeeeeeccCC------------CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeeccccCCceeecccccccchh
Q psy307 589 LFKKWKAHDG------------VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSI 656 (1019)
Q Consensus 589 ~l~~l~~h~~------------~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~ 656 (1019)
.+..+.+|.. .|.+++|+|++ .+|++++.||.|++| +....+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iw-d~~~~~------------------------ 306 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFW-DKDART------------------------ 306 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEE-ETTTTE------------------------
T ss_pred cceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEE-ECCCCc------------------------
Confidence 6778888876 79999999998 689999999999776 321100
Q ss_pred hhhhhcccccCCCceeEEEeecCCCceEEeccccccccCCceEEEEecCCccHHHHHhhcCCCchhhHHH
Q psy307 657 IQEICSGWSLSDSEQYALQFSETNNKNYITEKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNASLEEK 726 (1019)
Q Consensus 657 ~~~~~~~wsls~~e~~al~~sd~~~~~~it~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~~ 726 (1019)
....+ ..|.++|.+++|+|++ +.|++++.|+..+.|+.
T Consensus 307 ---------------~~~~~---------------~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 307 ---------------KLKTS---------------EQLDQPISACCFNHNG--NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---------------EEEEC---------------CCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGG
T ss_pred ---------------EEEEe---------------cCCCCCceEEEECCCC--CeEEEEecccccccccc
Confidence 01111 1356789999999999 88999999988776663
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=4.4e-23 Score=234.76 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=171.3
Q ss_pred EEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeE
Q psy307 362 LWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD 441 (1019)
Q Consensus 362 IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~s 441 (1019)
||++ ..+.++..+.+|...|.+++|+|+| .+|++|+.+| ++||++. ........ +...+..
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg--------------~~la~g~~~~-~~iw~~~-~~~~~~~~--~~~~~~~ 63 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQ--------------SCLILSTLKS-FEIYNVH-PVAHIMSQ--EMRHLSK 63 (355)
T ss_dssp -----------------CCCCCEEEECTTS--------------SEEEEECSSE-EEEEEET-TEEEEEEE--ECSCCCE
T ss_pred cccc-cccCCccccccCCCceEEEEECCCC--------------CEEEEEcCCE-EEEEecC-Ccceeeee--ecCCeEE
Confidence 4554 3445666778999999999999999 6888888775 7899984 33433332 2235788
Q ss_pred EEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCC---------cc
Q psy307 442 ICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMH---------SM 511 (1019)
Q Consensus 442 l~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~---------~i 511 (1019)
+++.++++.+ ++++.|++|++||+.+++++..+.....+.++.++++......+ ....+.+.... ..
T Consensus 64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYG---DVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEET---TEEEEEESSTTCCBSSCCEEEE
T ss_pred EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEc---CEEEEEECCCCceeeEEeccCC
Confidence 8999988887 56778899999999999999999988899999998864322211 11111111111 23
Q ss_pred cEEEEcCCCCEEEE--EecCCeEEEEEccCcccc------------cc-eeEEeccccccceEEEEEcCCCCEEEEEeCC
Q psy307 512 PAVTSSPNNKWLAC--QSMDNKILIFSALNRFKL------------NR-KKTFEGHMVAGYACSLDFSPDMSYLISGDAD 576 (1019)
Q Consensus 512 ~~v~~spdg~~Las--gs~Dg~I~iwd~~~~~~~------------~~-~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D 576 (1019)
..+++++ .++++ |+.||.|++||+.++... .. ...+.+|. +.|.+++|+|+|++|++|+.|
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCC
Confidence 3466677 56666 588999999999865310 11 56788887 779999999999999999999
Q ss_pred Ce-EEEEeCCCCceeeeee-c-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 577 GK-CYIWDWKTTKLFKKWK-A-HDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 577 G~-I~IWDl~t~~~l~~l~-~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
|+ |+|||+.+++.+..+. + |.+.|.+++|+|++ .+|++++.||+|++|.
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFE 268 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEE
Confidence 98 9999999999999998 5 99999999999998 6999999999997763
No 123
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=1.4e-22 Score=227.28 Aligned_cols=244 Identities=11% Similarity=-0.002 Sum_probs=191.2
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC--eEEEEEccccccEeEEEEecCCC-
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH--RCVRTYYGHRQAVRDICFNNTGT- 449 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~l~~H~~~V~sl~fspdg~- 449 (1019)
....+|...|.+++|+|++ .+|++|+.||.|++||+.... .....+.+|...|.+++|+|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~--------------~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 70 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK--------------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG--------------TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE
T ss_pred ecccCCCCcEEEEEEcCCC--------------CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc
Confidence 3456899999999999988 689999999999999996554 23455669999999999999999
Q ss_pred EEEEEEcCCeEEEEEC-CCCceEEEEe--cCCceEEEEEecCCCeeeeccCCCcee-------------------eeCCC
Q psy307 450 NFISAGYDRYLKLWDT-ESGECISRFT--SRKVAYCVKFHPDEDKQHLDIPVDMKY-------------------IADPT 507 (1019)
Q Consensus 450 ~l~S~s~Dg~I~lWDl-~t~~~i~~~~--~~~~v~~v~~~p~~~~~~~~~~~~~~~-------------------i~~~~ 507 (1019)
+|++++.||.|++||+ .+++...... +...+.+++|+| +...+......... ....+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 9999999999999999 8887644334 567899999999 55444321111111 11125
Q ss_pred CCcccEEEEcCCCCEEEEEecCCeEEEEEccC-cccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDNKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~ 585 (1019)
...+.+++++|++ +++++.|+.|++||+.+ .... .......|. ..+.+++|+| +++++++|+.||.|++|++.
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-GTIEESGLK--YQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-CEEEECSCS--SCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-ceeeecCCC--CceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 5678899999887 99999999999999987 4321 222333444 6799999999 99999999999999999998
Q ss_pred CC------ceeeeeeccCC---------CEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeecc
Q psy307 586 TT------KLFKKWKAHDG---------VCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEME 638 (1019)
Q Consensus 586 t~------~~l~~l~~h~~---------~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~~ 638 (1019)
.. +....+..|.. .|.+++|+|++ .+|++++.||.|++| +....+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vw-d~~~~~~~~~~~ 290 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCW-NLQTRKKIKNFA 290 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEE-ETTTTEEEEECC
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEE-cCccHhHhhhhh
Confidence 87 78888888865 99999999998 689999999999665 555444443333
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=8.8e-23 Score=225.66 Aligned_cols=245 Identities=13% Similarity=0.138 Sum_probs=177.9
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCC------------------------C----CcEE
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPK------------------------S----AHLL 351 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd------------------------~----g~lL 351 (1019)
.++++. ...|+||+..... .-+.+++|++|+.+|..|.+.|| + +..+
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l 130 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAW----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL 130 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSS----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE
T ss_pred EEEEec-cceEEEcccCCCc----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE
Confidence 445554 4689999876432 22578899999876666555551 3 4566
Q ss_pred EEeeCCCeEEEEecCCCcEEEEE-ecccCccEeEEEEcCCCCceeE---------EEeecC--CCCcEEEEEeCCCcEEE
Q psy307 352 LSCSMDCRVKLWEVYKERRCVRT-YYGHRQAVRDICFNNTGTNFIS---------AIRWFP--KSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 352 aSgs~Dg~I~IWdl~~~~~~~~~-~~gh~~~V~~i~fspdg~~~vs---------~i~~~p--~~~~~L~sgs~Dg~I~I 419 (1019)
++++. .+++|++ .+++.+.+ ..+|.+.|..++++|+|....+ .++|++ .++.+|++|+.|++|+|
T Consensus 131 ~s~g~--~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI 207 (356)
T 2w18_A 131 LKSGN--IKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI 207 (356)
T ss_dssp EEEEE--EEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred EeCCC--eEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence 76663 4888998 45666666 6789999999999999875432 345555 56789999999999999
Q ss_pred EEccCCCeEEEEEcccc---ccEeEEEEecCCCEE------------EEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 420 WEVYKEHRCVRTYYGHR---QAVRDICFNNTGTNF------------ISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~H~---~~V~sl~fspdg~~l------------~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
||+ .+++++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++++..+. +.
T Consensus 208 WDl-~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~-------~~ 279 (356)
T 2w18_A 208 WNL-KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML-------YC 279 (356)
T ss_dssp EET-TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE-------EC
T ss_pred EEC-CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE-------ee
Confidence 999 6678888887654 467788999999876 568899999999999998876442 11
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
+ |++. ....+..+.++.++++++.|++|+|||+.++ ..+.++.+|.. ..+.+++||
T Consensus 280 ~-p~Gh-------------------~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG---k~l~tL~gH~~-~vvs~vafS 335 (356)
T 2w18_A 280 L-PPGQ-------------------AGRFLEGDVKDHCAAAILTSGTIAIWDLLLG---QCTALLPPVSD-QHWSFVKWS 335 (356)
T ss_dssp C-CTTC-------------------CCCEEEEEEETTEEEEEETTSCEEEEETTTC---SEEEEECCC---CCCCEEEEC
T ss_pred c-cCCC-------------------cceeEccccCCCEEEEEcCCCcEEEEECCCC---cEEEEecCCCC-CeEEEEEEC
Confidence 1 2221 1112233344789999999999999999988 45678888862 224468999
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q psy307 565 PDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl 584 (1019)
|||++|++|+.|++|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999995
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=1e-21 Score=228.37 Aligned_cols=268 Identities=13% Similarity=0.116 Sum_probs=207.2
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
+++.++.++++..|+.|.+|+....... .......+.+|.+.|.+++|+|+ +.++++++.|+.|++||+ ..++++.
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~-~~~~~~~ 205 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDL-KTLAYKA 205 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEET-TTCCEEE
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEEC-CCceEEE
Confidence 4557788888888999999987643210 00111156799999999999885 889999999999999999 4556778
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..|...+.+++|+|++. .++++++.|+.|++||+ ..++.+..+..+ ..+.+++|+|+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRD-------------LVYCSNWISEDISVIDR-KTKLEIRKTDKI-GLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEECSSSSEEEEEEETTTT-------------EEEEEETTTTEEEEEET-TTTEEEEECCCC-SEEEEEEECTTSSEEEE
T ss_pred EEcCCCCCeeEEEEcCCCC-------------EEEEEecCCCcEEEEEC-CCCcEEEEecCC-CCceEEEEcCCCCEEEE
Confidence 8888999999999999883 34456668999999999 456666666654 45999999999999998
Q ss_pred EE--------cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec-cCCCceee----------eCCCCCcccEE
Q psy307 454 AG--------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD-IPVDMKYI----------ADPTMHSMPAV 514 (1019)
Q Consensus 454 ~s--------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~-~~~~~~~i----------~~~~~~~i~~v 514 (1019)
++ .|+.|++||+.+++.+..+.....+.+++|+|++....+. .......+ ...+...+.++
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 350 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTI 350 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeE
Confidence 88 4889999999999988888766788899999998755442 11111111 11234567899
Q ss_pred EEcCCCCEEEEEec---------------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCe
Q psy307 515 TSSPNNKWLACQSM---------------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGK 578 (1019)
Q Consensus 515 ~~spdg~~Lasgs~---------------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~ 578 (1019)
+|+|+|+++++++. ||.|++||+.++. ....+.++ ..+.+++|+|+|++|++++. ||.
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EEEEEECS---SSEEEEEECTTSCEEEEEETTTTE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EEEEecCC---CCCceEEEcCCCCEEEEEECCCCe
Confidence 99999999988876 5799999998763 33455443 56899999999999988875 999
Q ss_pred EEEEeCCC
Q psy307 579 CYIWDWKT 586 (1019)
Q Consensus 579 I~IWDl~t 586 (1019)
|++|++..
T Consensus 425 i~v~~~~~ 432 (433)
T 3bws_A 425 IRVYRRDG 432 (433)
T ss_dssp EEEEEETT
T ss_pred EEEEEecC
Confidence 99999763
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.89 E-value=8.9e-21 Score=217.26 Aligned_cols=245 Identities=9% Similarity=0.091 Sum_probs=191.8
Q ss_pred CCCCCCCee-eeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSF-LHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~-~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+.+ +++..|+.|++|+... .+.+..+..|. .|.+++|+|++..++++++.|+.|++||+ ..++.
T Consensus 38 ~~s~dg~~l~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~-~~~~~ 108 (391)
T 1l0q_A 38 VISPDGTKVYVANAHSNDVSIIDTAT-------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT-TSNTV 108 (391)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEETTT-------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET-TTTEE
T ss_pred EECCCCCEEEEECCCCCeEEEEECCC-------CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC-CCCeE
Confidence 467788876 6777899999998753 34566777666 99999999975555567778899999999 45566
Q ss_pred EEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 372 VRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
+..+..| ..+.+++|+|++. .++++++.|+.|++||+ ..++.+..+..| ..+.+++|+|+++.+
T Consensus 109 ~~~~~~~-~~~~~~~~s~dg~-------------~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~-~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 109 AGTVKTG-KSPLGLALSPDGK-------------KLYVTNNGDKTVSVINT-VTKAVINTVSVG-RSPKGIAVTPDGTKV 172 (391)
T ss_dssp EEEEECS-SSEEEEEECTTSS-------------EEEEEETTTTEEEEEET-TTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred EEEEeCC-CCcceEEECCCCC-------------EEEEEeCCCCEEEEEEC-CCCcEEEEEecC-CCcceEEECCCCCEE
Confidence 6666654 4678899988883 34478888999999999 556777777665 456899999999987
Q ss_pred -EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe---
Q psy307 452 -ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--- 527 (1019)
Q Consensus 452 -~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--- 527 (1019)
++++.|+.|++||+++++++..+..... +.+++++|+|++|++++
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVKVEAA-------------------------------PSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSE-------------------------------EEEEEECTTSSEEEEEEECS
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEecCCC-------------------------------ccceEECCCCCEEEEEecCc
Confidence 5677889999999999987766654333 34566778888888887
Q ss_pred cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeeeeeccCCC
Q psy307 528 MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYL-ISGDADGKCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~L-asgs~DG~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
.++.|++||+.++. ....+..+ ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 222 ~~~~v~~~d~~~~~---~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 222 YFNTVSMIDTGTNK---ITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SCCEEEEEETTTTE---EEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCCcEEEEECCCCe---EEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 68999999998763 34555555 347889999999987 67788999999999999999988877654
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.87 E-value=6.3e-21 Score=221.86 Aligned_cols=268 Identities=11% Similarity=0.079 Sum_probs=202.5
Q ss_pred ceeeecC--CCCCCccCCccce--eeeccCCCCeEEEEEcCC-------------CCcEEEEeeCC------CeEEEEec
Q psy307 309 GTNLRSD--TPPDRCFLPKTQV--HTWEGHTKGISAIRWFPK-------------SAHLLLSCSMD------CRVKLWEV 365 (1019)
Q Consensus 309 ~v~lw~~--~~~~~~~lp~~~i--~~l~gH~~~V~~i~fspd-------------~g~lLaSgs~D------g~I~IWdl 365 (1019)
.++||+. ... +++ .++.+|...+..+++++. .+..++.++.+ +.|++||+
T Consensus 94 ~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~ 166 (415)
T 2hqs_A 94 AYQLVDTGGAPG-------TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY 166 (415)
T ss_dssp EEEEEECSSSTT-------CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred EEEEEeCCCCCC-------CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence 8999987 422 334 568999999988887751 03445555443 79999998
Q ss_pred CCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC---cEEEEEccCCCeEEEEEccccccEeEE
Q psy307 366 YKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC---RVKLWEVYKEHRCVRTYYGHRQAVRDI 442 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~l~~H~~~V~sl 442 (1019)
.. ...+.+.+|...|.+++|+|+| +.|++++.++ .|++||+.. ++. ..+..|...+.++
T Consensus 167 ~g--~~~~~l~~~~~~v~~~~~Spdg--------------~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~~~~~~~~~ 228 (415)
T 2hqs_A 167 DG--YNQFVVHRSPQPLMSPAWSPDG--------------SKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAP 228 (415)
T ss_dssp TS--CSCEEEEEESSCEEEEEECTTS--------------SEEEEEECTTSSCEEEEEETTT-CCE-EEEECCSSCEEEE
T ss_pred CC--CCCEEEeCCCCcceeeEEcCCC--------------CEEEEEEecCCCcEEEEEECCC-CcE-EEeecCCCcccCE
Confidence 43 4467788899999999999999 6888888875 999999954 444 3567788899999
Q ss_pred EEecCCCEEE-EEEcCCe--EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC---cee----------eeCC
Q psy307 443 CFNNTGTNFI-SAGYDRY--LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD---MKY----------IADP 506 (1019)
Q Consensus 443 ~fspdg~~l~-S~s~Dg~--I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~---~~~----------i~~~ 506 (1019)
+|+|+|++|+ +++.|+. |.+||+.++++.........+.+++|+|++..+++..... ..+ ....
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~ 308 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW 308 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec
Confidence 9999999887 6666654 9999999988754444556788999999998766533211 111 1122
Q ss_pred CCCcccEEEEcCCCCEEEEEecC---CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC---eEE
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMD---NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG---KCY 580 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~D---g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG---~I~ 580 (1019)
+...+..++|+|+|++|++++.+ +.|.+||+.++.. ..+..+ ..+.+++|+|||++|++++.++ .|+
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----EEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 34456789999999999988865 5899999987632 234444 2588999999999999988877 799
Q ss_pred EEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 581 IWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 581 IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
+||+. +.....+..|.+.|.+++|+|..
T Consensus 382 ~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 382 LVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99986 56677889999999999999964
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=5e-20 Score=221.60 Aligned_cols=317 Identities=10% Similarity=0.049 Sum_probs=229.6
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-CCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-~~~~~ 371 (1019)
.++++|+.+++...|+.|.+|+.. ..+++.++..+.. +.+++|+|+ +++|++++.|++|.+||+. ...++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-------t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-------SKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-------TCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-------CceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcE
Confidence 367788999999999999999765 3456778873333 999999996 8899999999999999993 34567
Q ss_pred EEEecccCccEeEEEEcC----CCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEEEEEcc----------cc
Q psy307 372 VRTYYGHRQAVRDICFNN----TGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCVRTYYG----------HR 436 (1019)
Q Consensus 372 ~~~~~gh~~~V~~i~fsp----dg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~l~~----------H~ 436 (1019)
+.++.. ...+..++|+| +| ++|++++ .+++|.+||. .+.+++..+.. |.
T Consensus 215 ~~~i~~-g~~p~~va~sp~~~~dg--------------~~l~v~~~~~~~v~v~D~-~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 215 VAEIKI-GIEARSVESSKFKGYED--------------RYTIAGAYWPPQFAIMDG-ETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTT--------------TEEEEEEEESSEEEEEET-TTCCEEEEEECCEECSSSCCEES
T ss_pred EEEEec-CCCcceEEeCCCcCCCC--------------CEEEEEEccCCeEEEEec-cccccceeecccCcccCcccccc
Confidence 777764 45679999999 88 5777776 5899999998 56666666654 33
Q ss_pred c-cEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEE--EEecCCceEEEEEecCCCeeeeccC-CCc---------ee
Q psy307 437 Q-AVRDICFNNTGTN-FISAGYDRYLKLWDTESGECIS--RFTSRKVAYCVKFHPDEDKQHLDIP-VDM---------KY 502 (1019)
Q Consensus 437 ~-~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~--~~~~~~~v~~v~~~p~~~~~~~~~~-~~~---------~~ 502 (1019)
. .+.++.++|++.. +++...+++|.+||+.+++.+. .+.....+..+.|+|++....+... ... +.
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l 358 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL 358 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE
Confidence 3 7899999998776 5566678999999998876544 5666677889999999986544111 111 11
Q ss_pred ---eeC---CCCCcccEEEEcCC-CCEEEEEe-cCCeEEEEEccCccc----ccceeEEeccccccceEEEEEcCCCCEE
Q psy307 503 ---IAD---PTMHSMPAVTSSPN-NKWLACQS-MDNKILIFSALNRFK----LNRKKTFEGHMVAGYACSLDFSPDMSYL 570 (1019)
Q Consensus 503 ---i~~---~~~~~i~~v~~spd-g~~Lasgs-~Dg~I~iwd~~~~~~----~~~~~~l~gh~~~~~V~~v~fspdg~~L 570 (1019)
+.. +|......+ ++|+ +..+++++ .|++|.+||+.+... ...++++.+|. +.+..++++|||++|
T Consensus 359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l 435 (543)
T 1nir_A 359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHL 435 (543)
T ss_dssp EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEE
T ss_pred EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcE
Confidence 111 122112222 4677 66666665 589999999987211 45678888876 456789999999999
Q ss_pred EEEe-------CCCeEEEEeCCCCcee-eee--------eccCCCEEEEEEcCCCCcEEEEEe----CCCcEEEEeccce
Q psy307 571 ISGD-------ADGKCYIWDWKTTKLF-KKW--------KAHDGVCISTLWHPHEPSKVVTAG----WDAATAKVQDANI 630 (1019)
Q Consensus 571 asgs-------~DG~I~IWDl~t~~~l-~~l--------~~h~~~V~sl~~sp~~~~~l~s~s----~Dg~I~iwwd~~i 630 (1019)
++++ .+++|.|||+.+++.. ..+ ..+...+..+.|+|+|...+++.. .|+.|.+ ||...
T Consensus 436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v-~D~~t 514 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV-VDDKT 514 (543)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE-EETTT
T ss_pred EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE-EECCC
Confidence 9987 3679999999999876 443 345678999999999964444432 3788866 66666
Q ss_pred eeeeeecc
Q psy307 631 VKIAVEME 638 (1019)
Q Consensus 631 ~ki~~e~~ 638 (1019)
.+......
T Consensus 515 ~~~~~~i~ 522 (543)
T 1nir_A 515 LKLKAVVK 522 (543)
T ss_dssp TEEEEEEC
T ss_pred ceEEEeec
Confidence 66554433
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=4.4e-20 Score=214.69 Aligned_cols=266 Identities=10% Similarity=0.043 Sum_probs=195.7
Q ss_pred CCeEEEEEcCCCCcEEEEee----CCC----eEEEEec--CCCcEEE-EEecccCccEeEEEEcCC--------CCceeE
Q psy307 336 KGISAIRWFPKSAHLLLSCS----MDC----RVKLWEV--YKERRCV-RTYYGHRQAVRDICFNNT--------GTNFIS 396 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs----~Dg----~I~IWdl--~~~~~~~-~~~~gh~~~V~~i~fspd--------g~~~vs 396 (1019)
..|....|++.+..++++|+ .|| .|+|||+ ....... ..+.+|...+..+++++. |..
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~--- 139 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK--- 139 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC---
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC---
Confidence 46777888888778888887 467 9999999 6654332 568889888888777641 100
Q ss_pred EEeecCCCCcEEEEEeCC------CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---eEEEEECCC
Q psy307 397 AIRWFPKSAHLLLSCSMD------CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---YLKLWDTES 467 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---~I~lWDl~t 467 (1019)
.+.+ ..++.++.+ +.|++||+. +.....+.+|...|.+++|+|+|++|++++.|+ .|++||+.+
T Consensus 140 ----~~~~-~~l~~~s~~~~~~~~~~i~i~d~~--g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 140 ----GAFR-TRIAYVVQTNGGQFPYELRVSDYD--GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp ----CCTT-CEEEEEEECSSSSCCEEEEEEETT--SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred ----CcCC-CEEEEEEecCCCCccceEEEEcCC--CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 0011 344444443 799999984 344677788999999999999999999999885 999999999
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeeccC-------------CCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C--e
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIP-------------VDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N--K 531 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~-------------~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g--~ 531 (1019)
+++.........+.+++|+|++..+++... .........+...+.+++|+|+|++|++++.+ + .
T Consensus 213 g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 213 GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 988765556678899999999987664211 11111222344567889999999999988864 4 6
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD---GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D---G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
|.+||+.++. ...+..+. ..+.+++|+|||++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+
T Consensus 293 i~~~d~~~~~----~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spd 364 (415)
T 2hqs_A 293 VYKVNINGGA----PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPN 364 (415)
T ss_dssp EEEEETTSSC----CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTT
T ss_pred EEEEECCCCC----EEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCC
Confidence 8888887653 12333333 568899999999999988764 58999999998774 455554 7899999999
Q ss_pred CCcEEEEEeCCC
Q psy307 609 EPSKVVTAGWDA 620 (1019)
Q Consensus 609 ~~~~l~s~s~Dg 620 (1019)
+ ..|++++.|+
T Consensus 365 g-~~l~~~s~~~ 375 (415)
T 2hqs_A 365 G-TMVIYSSSQG 375 (415)
T ss_dssp S-SEEEEEEEET
T ss_pred C-CEEEEEEcCC
Confidence 8 5777777666
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.2e-19 Score=195.37 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=184.9
Q ss_pred eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-Ccc
Q psy307 303 HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQA 381 (1019)
Q Consensus 303 ~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~ 381 (1019)
..+.|+.|.+|+.... ....+..|.+.|.+++|+|+ +.+|++++ ++.|.+||+...++......+| ...
T Consensus 17 ~~~~~~~i~~~d~~~~--------~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--------KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp -CCCCEEEEEEETTTT--------EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred CCCcceeEEEEeCCCC--------ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEecccccccc
Confidence 3457889999986532 23456778999999999996 77888776 8899999995414555555555 467
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE-EEEcCC
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI-SAGYDR 458 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~-S~s~Dg 458 (1019)
|.+++|+|+| ++|++++ .++.+.||.+.........+..+. .+.+++|+|+++.|+ +++.|+
T Consensus 87 ~~~~~~spdg--------------~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 87 NNDHGISPDG--------------ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp CSCCEECTTS--------------SEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETT
T ss_pred ccceEECCCC--------------CEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCC
Confidence 8899999998 5777777 445677776643333344444444 488999999999877 788899
Q ss_pred eEEEEECC--CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEE
Q psy307 459 YLKLWDTE--SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIF 535 (1019)
Q Consensus 459 ~I~lWDl~--t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iw 535 (1019)
.++||+++ ++... .+. .+...+.+++|+|+|++|++++ .++.+.+|
T Consensus 152 ~~~l~~~~~~~~~~~-~~~------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~ 200 (297)
T 2ojh_A 152 VFDIYSMDIDSGVET-RLT------------------------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIW 200 (297)
T ss_dssp EEEEEEEETTTCCEE-ECC------------------------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred ceEEEEEECCCCcce-Ecc------------------------------cCCCccccceECCCCCEEEEEecCCCCccEE
Confidence 99999853 33321 111 1224566788899999888766 58999999
Q ss_pred EccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----------CeEEEEeCCCCce--eeeeeccCCCEEE
Q psy307 536 SALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----------GKCYIWDWKTTKL--FKKWKAHDGVCIS 602 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----------G~I~IWDl~t~~~--l~~l~~h~~~V~s 602 (1019)
++.... .....+..+. ..+.+++|+|+|++|++++.+ +.|++||+.+++. +..+.+|...+.+
T Consensus 201 ~~~~~~--~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 276 (297)
T 2ojh_A 201 RVRVDG--SSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNS 276 (297)
T ss_dssp EEETTS--SCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCS
T ss_pred EECCCC--CCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCccccc
Confidence 886221 2234455554 568899999999999888766 5699999998866 4445578889999
Q ss_pred EEEcCCCCcEEEEEeCCC
Q psy307 603 TLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 603 l~~sp~~~~~l~s~s~Dg 620 (1019)
++|+|++. .|++++.|.
T Consensus 277 ~~~spdg~-~l~~~~~~~ 293 (297)
T 2ojh_A 277 PNWSPDGD-EFAYVRYFP 293 (297)
T ss_dssp CCBCTTSS-EEEEEEECC
T ss_pred ceECCCCC-EEEEEEecc
Confidence 99999994 666665543
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=1.1e-18 Score=194.94 Aligned_cols=277 Identities=8% Similarity=0.073 Sum_probs=184.2
Q ss_pred eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC-CeEEEEecC--C-CcEEEEEe
Q psy307 300 SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD-CRVKLWEVY--K-ERRCVRTY 375 (1019)
Q Consensus 300 ~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D-g~I~IWdl~--~-~~~~~~~~ 375 (1019)
.+++...|+.|.+|+...... .+.+.. ..|...+.+++|+|+ +.+|++++.+ +.|.+|++. . ....+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA----LTLTQV-VDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----EEEEEE-EECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCc----EEEeee-EecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 455557899999998753111 122333 357788999999996 6667777765 999999995 2 22344455
Q ss_pred cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCCcEEEEEccCC--CeEEEEEccccccEeEEEEecCCCEEE
Q psy307 376 YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKE--HRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 376 ~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg~I~IWDl~~~--~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+. .+.+++|+|+| ++|+++ ..++.|.+||+... ......+..+ ..+.+++|+|+|++++
T Consensus 81 ~~~~-~~~~~~~s~dg--------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 81 ALPG-SLTHISTDHQG--------------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLW 144 (343)
T ss_dssp ECSS-CCSEEEECTTS--------------SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEE
T ss_pred ccCC-CCcEEEEcCCC--------------CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEE
Confidence 5444 78888898888 455444 45899999999521 2233444433 4588899999999988
Q ss_pred EEE-cCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe-cC
Q psy307 453 SAG-YDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS-MD 529 (1019)
Q Consensus 453 S~s-~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~D 529 (1019)
+++ .++.|.+||+.+ ++....... . ........+..++|+|+|+++++++ .+
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~-------~------------------~~~~~~~~~~~~~~~pdg~~l~~~~~~~ 199 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPA-------E------------------VTTVEGAGPRHMVFHPNEQYAYCVNELN 199 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEE-------E------------------EECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred EecCCCCEEEEEEecCCCceeeeccc-------c------------------cccCCCCCcceEEECCCCCEEEEEeCCC
Confidence 888 899999999987 543221100 0 0001112345688999999776554 78
Q ss_pred CeEEEEEccCc-ccccceeEEe----ccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeCC--C--CceeeeeeccCCC
Q psy307 530 NKILIFSALNR-FKLNRKKTFE----GHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDWK--T--TKLFKKWKAHDGV 599 (1019)
Q Consensus 530 g~I~iwd~~~~-~~~~~~~~l~----gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl~--t--~~~l~~l~~h~~~ 599 (1019)
+.|.+|++... .......... ++.....+..++|+|+|++|+ ++..++.|.+||+. + .+.+..+..+..
T Consensus 200 ~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~- 278 (343)
T 1ri6_A 200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ- 278 (343)
T ss_dssp TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-
T ss_pred CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-
Confidence 99999999531 1111122222 112224577899999999877 45578999999998 3 345555655554
Q ss_pred EEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
+.+++|+|++. ++++++ .++.|.+|
T Consensus 279 ~~~~~~s~dg~-~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 279 PRGFNVDHSGK-YLIAAGQKSHHISVY 304 (343)
T ss_dssp CCCEEECTTSS-EEEEECTTTCEEEEE
T ss_pred cceEEECCCCC-EEEEecCCCCeEEEE
Confidence 88999999985 555555 67888665
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=1.3e-18 Score=194.30 Aligned_cols=267 Identities=10% Similarity=0.006 Sum_probs=187.5
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
..|.++++.++++++.++.|.+||+. .++.+..+..+...+ .++|+|+|. .+++++..++.|.+|
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~dg~-------------~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSDCS-------------NVVVTSDFCQTLVQI 67 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSSSC-------------EEEEEESTTCEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCCCC-------------EEEEEeCCCCeEEEE
Confidence 34566667778899999999999994 456666666666667 999999883 244444558999999
Q ss_pred EccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec-c
Q psy307 421 EVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD-I 496 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~-~ 496 (1019)
|+.........+..+...+.+++|+|+|++++++..++ .|.+||+.+++.+..+.....+.+++|+|++....+. .
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp ECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred ECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence 99544433666777777766699999999998555553 8999999999999999888888999999999755442 2
Q ss_pred CCCc-ee---------------eeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceE
Q psy307 497 PVDM-KY---------------IADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYAC 559 (1019)
Q Consensus 497 ~~~~-~~---------------i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~ 559 (1019)
.... .. ...........++|+|+|++++++ ..++.|.+||+.++........+..+ ..+.
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~ 224 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPG 224 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCC
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCc
Confidence 1111 11 011223446789999999966554 46899999999876442224445443 4567
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCCCce--eeeeecc----CC---CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 560 SLDFSPDMSYLISGD-ADGKCYIWDWKTTKL--FKKWKAH----DG---VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~--l~~l~~h----~~---~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++|+|||++|+.++ .++.|.+||+.+++. +..+..+ .. .+.+++|+|++..+++++..++.|.+|
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 899999999776554 578899999999877 4444322 22 235689999995444555556677554
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=4e-19 Score=230.83 Aligned_cols=269 Identities=7% Similarity=-0.022 Sum_probs=201.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...+.+|.+.|.++.|+++ .++++++.||.++||.+...+.....+..|. .+..++|+|+| +.
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG--------------~~ 258 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG--------------RR 258 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS--------------SC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC--------------CE
Confidence 3456889999999999985 7788888999999998754444455666665 45677888888 45
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc-----------ccccEeEEEEe-cCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG-----------HRQAVRDICFN-NTGTNFISAGYDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~-----------H~~~V~sl~fs-pdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
|+.+ .++.|.+||+ ...... .+.+ |...+.+++|+ |+|+++++++ ++.|.+|++.++.......
T Consensus 259 la~~-~~~~i~~~d~-~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~ 334 (1045)
T 1k32_A 259 ILFS-KGGSIYIFNP-DTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE 334 (1045)
T ss_dssp EEEE-ETTEEEEECT-TTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred EEEE-eCCEEEEecC-CceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccC
Confidence 5555 4899999998 333333 5544 45579999999 9999999887 8899999999887654333
Q ss_pred cCC-ceEEEEEecCCCeeee-----------ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc
Q psy307 476 SRK-VAYCVKFHPDEDKQHL-----------DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL 543 (1019)
Q Consensus 476 ~~~-~v~~v~~~p~~~~~~~-----------~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~ 543 (1019)
... .+..++|+ ++..+++ +...........+...+..++|+|+|++|++++.++.|++||+.++.
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-- 411 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-- 411 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc--
Confidence 334 67788888 6654333 11111111112445667899999999999999999999999998763
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCCC----------eEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEE
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG----------KCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG----------~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
......+|. +.+.+++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|+| ..|
T Consensus 412 -~~~~~~~~~--~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l 486 (1045)
T 1k32_A 412 -PTVIERSRE--AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNL 486 (1045)
T ss_dssp -EEEEEECSS--SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEE
T ss_pred -eEEeccCCC--CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEE
Confidence 334444665 5678899999999999887654 89999999887 67777888889999999999 578
Q ss_pred EEEeCCCcEEEE
Q psy307 614 VTAGWDAATAKV 625 (1019)
Q Consensus 614 ~s~s~Dg~I~iw 625 (1019)
++++.++....|
T Consensus 487 ~~~s~~~~~~~~ 498 (1045)
T 1k32_A 487 YYLSYRSLDPSP 498 (1045)
T ss_dssp EEEESCCCCCEE
T ss_pred EEEecccCCcCc
Confidence 888887776665
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.82 E-value=4.4e-18 Score=204.64 Aligned_cols=261 Identities=13% Similarity=0.127 Sum_probs=196.2
Q ss_pred EcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc
Q psy307 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422 (1019)
Q Consensus 343 fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl 422 (1019)
|+|+ +.++++++.|++|.+||. ..++++.++..+.. +..++|+|+| ++|++++.|++|.+||+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg--------------~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASG--------------RYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTS--------------CEEEEEETTSEEEEEET
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCC--------------CEEEEECCCCeEEEEEC
Confidence 6774 788999999999999999 55677888873333 8899999999 68999999999999999
Q ss_pred c-CCCeEEEEEccccccEeEEEEec----CCCEEEEEEc-CCeEEEEECCCCceEEEEecC------------CceEEEE
Q psy307 423 Y-KEHRCVRTYYGHRQAVRDICFNN----TGTNFISAGY-DRYLKLWDTESGECISRFTSR------------KVAYCVK 484 (1019)
Q Consensus 423 ~-~~~~~~~~l~~H~~~V~sl~fsp----dg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~------------~~v~~v~ 484 (1019)
. .+.+++..+. +...+.+++|+| +|++++++++ +++|.+||..+++++.++... ..+..+.
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 3 3456677776 455679999999 9999998885 899999999999999888652 2577899
Q ss_pred EecCCCeeeeccCCCce-ee------------eCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEe
Q psy307 485 FHPDEDKQHLDIPVDMK-YI------------ADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~-~i------------~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
++|++...++....... .+ .......+..+.|+|+|++|++++ .+++|.+||+.++.. ...+.
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---~~~i~ 363 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---SALVD 363 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---EEeec
Confidence 99987655442211110 00 112334567899999999876654 589999999998743 34444
Q ss_pred c----cccccceEEEEEcCC-CCEEEEEe-CCCeEEEEeCCC-------CceeeeeeccCCCEEEEEEcCCCCcEEEEEe
Q psy307 551 G----HMVAGYACSLDFSPD-MSYLISGD-ADGKCYIWDWKT-------TKLFKKWKAHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 551 g----h~~~~~V~~v~fspd-g~~Lasgs-~DG~I~IWDl~t-------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
. |. +....+ ++|+ |.+++++. .|++|.|||+.+ ++.++++.+|.+.+..+++||++ ..|++++
T Consensus 364 ~g~~ph~--g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~ 439 (543)
T 1nir_A 364 VGKTPHP--GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDT 439 (543)
T ss_dssp CSSSBCC--TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECC
T ss_pred cCCCCCC--CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEec
Confidence 3 32 222223 4777 66677775 689999999998 89999999998888999999998 5777776
Q ss_pred -------CCCcEEEEeccc
Q psy307 618 -------WDAATAKVQDAN 629 (1019)
Q Consensus 618 -------~Dg~I~iwwd~~ 629 (1019)
.+++|.+| |.+
T Consensus 440 ~~~~~~~~~~~v~v~-d~~ 457 (543)
T 1nir_A 440 TFNPDARISQSVAVF-DLK 457 (543)
T ss_dssp TTCSSHHHHTCEEEE-ETT
T ss_pred CCCCCcccCceEEEE-ECC
Confidence 26688554 544
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.81 E-value=3.4e-18 Score=213.40 Aligned_cols=297 Identities=9% Similarity=0.001 Sum_probs=207.8
Q ss_pred CCCCCCCCeeeeCCC-CC-----ceeeecCCCCCCccCCccceeeeccCC------------------------CCeEEE
Q psy307 292 DPTDYQGRSFLHPPH-DV-----GTNLRSDTPPDRCFLPKTQVHTWEGHT------------------------KGISAI 341 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~-D~-----~v~lw~~~~~~~~~lp~~~i~~l~gH~------------------------~~V~~i 341 (1019)
..++++|+.++++.. |+ .|.+|+..... ....+.+|. ..|.++
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-------TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-------EEEEECGGGTC--------------------CCEESCCC
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-------eeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 357889999999887 87 89999876432 233333332 238999
Q ss_pred EEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEE
Q psy307 342 RWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLW 420 (1019)
Q Consensus 342 ~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IW 420 (1019)
+|+|| |++|++++. +.|.+||+.... .....+..|...+.+++|+||| ++|+.++ ++.|++|
T Consensus 115 ~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG--------------~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 115 QWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG--------------GFVSFIR-GRNLWVI 177 (741)
T ss_dssp EECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS--------------SEEEEEE-TTEEEEE
T ss_pred EECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC--------------CEEEEEe-CCcEEEE
Confidence 99996 777777776 999999995431 0345577788889999999999 5677666 4699999
Q ss_pred EccCCCeEEEEEcccccc----------------EeEEEEecCCCEEEEEEcCC--------------------------
Q psy307 421 EVYKEHRCVRTYYGHRQA----------------VRDICFNNTGTNFISAGYDR-------------------------- 458 (1019)
Q Consensus 421 Dl~~~~~~~~~l~~H~~~----------------V~sl~fspdg~~l~S~s~Dg-------------------------- 458 (1019)
|+ .++........+... +.+++|+|||++|++++.|+
T Consensus 178 d~-~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 178 DL-ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ET-TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred ec-CCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 99 445555544444332 47899999999999998876
Q ss_pred -------eEEEEECCC-CceEEEEe---cCCceEEEEEecCCCeeeeccC---------------C-CceeeeCCCC-C-
Q psy307 459 -------YLKLWDTES-GECISRFT---SRKVAYCVKFHPDEDKQHLDIP---------------V-DMKYIADPTM-H- 509 (1019)
Q Consensus 459 -------~I~lWDl~t-~~~i~~~~---~~~~v~~v~~~p~~~~~~~~~~---------------~-~~~~i~~~~~-~- 509 (1019)
.|.+||+.+ ++...... ....+..++| |++..+++... . ....+...+. .
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 899999998 87655442 3356789999 99987664211 0 0111111111 1
Q ss_pred --cccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEE-EEcCCCCEEEE-EeCCC--eEEEEe
Q psy307 510 --SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSL-DFSPDMSYLIS-GDADG--KCYIWD 583 (1019)
Q Consensus 510 --~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v-~fspdg~~Las-gs~DG--~I~IWD 583 (1019)
.+..++|+|+|+++++++.||.+.||.+.... . ...+..+. ..+..+ .|+|||+.|+. ++.++ .++||+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 34688999999999999999988888765221 1 34455554 457676 59999997754 55555 899999
Q ss_pred CCC-CceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 584 WKT-TKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 584 l~t-~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+.. +.....+.. ...+.+++|+|++..++++++...
T Consensus 411 ~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 411 VPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp EETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred EEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 864 565666665 566889999999965555555544
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=2.5e-17 Score=185.10 Aligned_cols=268 Identities=9% Similarity=0.032 Sum_probs=193.7
Q ss_pred CCCCCCCeeeeCCC-------CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEec
Q psy307 293 PTDYQGRSFLHPPH-------DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEV 365 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~-------D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl 365 (1019)
.++++|+.++.+.. ++.|.+|+... .+.+..+... ..+.+++|+|++..+++++..++.|.+||.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-------~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVT-------LEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTT-------CCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-------CeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35667777665553 56788887653 2344555443 357889999985557777777899999999
Q ss_pred CCCcEEEEEecccCcc---------EeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEEcc
Q psy307 366 YKERRCVRTYYGHRQA---------VRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTYYG 434 (1019)
Q Consensus 366 ~~~~~~~~~~~gh~~~---------V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l~~ 434 (1019)
. .++.+..+..+... +.+++|+|+| +.+++++ .++.|.+||+ ..++....+..
T Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~i~~~d~-~~~~~~~~~~~ 182 (353)
T 3vgz_A 119 K-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT--------------NTVYISGIGKESVIWVVDG-GNIKLKTAIQN 182 (353)
T ss_dssp T-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT--------------TEEEEEEESSSCEEEEEET-TTTEEEEEECC
T ss_pred C-CCeeEEEEecCCCccccccCCCCCceEEECCCC--------------CEEEEEecCCCceEEEEcC-CCCceEEEecC
Confidence 4 45556666554322 6778888877 3444444 5789999999 56677777776
Q ss_pred ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEE
Q psy307 435 HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAV 514 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v 514 (1019)
+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.... ..+...+..+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------------------~~~~~~~~~~ 236 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD--------------------------DGKEHFFINI 236 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------SSSCCCEEEE
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC--------------------------CCCCcccceE
Confidence 66778899999999999999999999999999998876665321 0112345568
Q ss_pred EEcCCCCEEEEEec-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeee
Q psy307 515 TSSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 515 ~~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~ 592 (1019)
+++|+|+++++++. ++.|.+||..++.. ...+.... ...++|+|+|++++.++ .++.|.+||..+++.+..
T Consensus 237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 237 SLDTARQRAFITDSKAAEVLVVDTRNGNI---LAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEETTTTEEEEEESSSSEEEEEETTTCCE---EEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcE---EEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 88999987777665 48999999987643 33333322 24689999999666555 689999999999999888
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
+..+. .+.+++|+|++. .++.+..+
T Consensus 310 ~~~~~-~~~~~~~s~dg~-~l~v~~~~ 334 (353)
T 3vgz_A 310 FDTPT-HPNSLALSADGK-TLYVSVKQ 334 (353)
T ss_dssp EECCS-EEEEEEECTTSC-EEEEEEEC
T ss_pred EecCC-CCCeEEEcCCCC-EEEEEEcc
Confidence 87654 679999999985 44444444
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.80 E-value=1.9e-18 Score=215.77 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=192.1
Q ss_pred CCCeEEEEEcCCCCcEEEEeeC-CC-----eEEEEecCCCcEEEEEecccCc------------------------cEeE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSM-DC-----RVKLWEVYKERRCVRTYYGHRQ------------------------AVRD 384 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~-Dg-----~I~IWdl~~~~~~~~~~~gh~~------------------------~V~~ 384 (1019)
...|.+++|+|| |++|++++. |+ .|++||+. +++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 457999999996 788888887 88 99999994 4455555554433 3778
Q ss_pred EEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC-eEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEE
Q psy307 385 ICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH-RCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLW 463 (1019)
Q Consensus 385 i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lW 463 (1019)
++|+||| ++|++++. +.|++||+.... .....+..|...+.+++|+|||++|++++ ++.|.+|
T Consensus 114 ~~~SpDg--------------~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 114 YQWSPDA--------------QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp CEECTTS--------------SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEE
T ss_pred eEECCCC--------------CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEE
Confidence 8888888 56777665 999999995431 03445677888999999999999999887 5699999
Q ss_pred ECCCCceEEEEecCCc-----------------eEEEEEecCCCeeeeccCCC---------------------------
Q psy307 464 DTESGECISRFTSRKV-----------------AYCVKFHPDEDKQHLDIPVD--------------------------- 499 (1019)
Q Consensus 464 Dl~t~~~i~~~~~~~~-----------------v~~v~~~p~~~~~~~~~~~~--------------------------- 499 (1019)
|+.+++.......+.. +..+.|+|++..+++.....
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9999877654443322 46799999998765531100
Q ss_pred ------ceeeeC--------------CCCCcccEEEEcCCCCEEEEEec-----CCeEEEEEccCcccccceeEEecccc
Q psy307 500 ------MKYIAD--------------PTMHSMPAVTSSPNNKWLACQSM-----DNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 500 ------~~~i~~--------------~~~~~i~~v~~spdg~~Lasgs~-----Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
...+.+ .+...+..++| |||++|++++. ++.|.+||+.++.. ...+..+.
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~- 332 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---RVLAHETS- 332 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---EEEEEEEC-
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---EEEEEcCC-
Confidence 111111 13345678999 99999998764 56899999987632 23333332
Q ss_pred cc---ceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeeccCCCEEEE-EEcCCCCcEEEEEeCCC--cEEEE
Q psy307 555 AG---YACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKAHDGVCIST-LWHPHEPSKVVTAGWDA--ATAKV 625 (1019)
Q Consensus 555 ~~---~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h~~~V~sl-~~sp~~~~~l~s~s~Dg--~I~iw 625 (1019)
.. .+..++|+|||+++++++.||.++||.+. +++ ...+..|...|.++ .|+|++..++++++.|+ .+.+|
T Consensus 333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 12 24578999999999999999988888765 455 77888888888887 59999965556666665 66555
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.80 E-value=9.5e-18 Score=217.86 Aligned_cols=380 Identities=13% Similarity=0.105 Sum_probs=245.3
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC------CeEEEEecCCCcEE
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD------CRVKLWEVYKERRC 371 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D------g~I~IWdl~~~~~~ 371 (1019)
|+.++.... +.+.+|+.... ....+.+|.+.|.+++|||| |+.|++++.+ ..|.+|++.. +.
T Consensus 24 ~~~iaf~~~-~~l~~~~~~gg--------~~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~-g~- 91 (1045)
T 1k32_A 24 GDRIIFVCC-DDLWEHDLKSG--------STRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGEN-GE- 91 (1045)
T ss_dssp TTEEEEEET-TEEEEEETTTC--------CEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTT-TE-
T ss_pred CCEEEEEEC-CcEEEEECCCC--------cEEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCC-CC-
Confidence 456665544 57888876532 35678899999999999997 6777766543 4799999844 33
Q ss_pred EEEecccCccE-------eEEEEcCCCCceeEEE---------------------------------eecCCCCcEEEEE
Q psy307 372 VRTYYGHRQAV-------RDICFNNTGTNFISAI---------------------------------RWFPKSAHLLLSC 411 (1019)
Q Consensus 372 ~~~~~gh~~~V-------~~i~fspdg~~~vs~i---------------------------------~~~p~~~~~L~sg 411 (1019)
.+.+..|...+ ..++|+|||. ++... +|+| + +++++
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp--G-~l~~~ 167 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD--G-RRVIG 167 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET--T-EEEEE
T ss_pred eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC--C-EEEEe
Confidence 57788898888 8999999996 22111 1222 1 34444
Q ss_pred eC------------CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecCC
Q psy307 412 SM------------DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSRK 478 (1019)
Q Consensus 412 s~------------Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~~ 478 (1019)
+. +....+|.....+ ....+.+|...+.++.|+++ ..+++++.|+++.||.+.. +.....+..+.
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~-~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 245 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT 245 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred ccCCCccccccccCCCcCCEEEECCCC-CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC
Confidence 31 2334555433332 33445789999999999988 5667778889999998653 33445555555
Q ss_pred ceEEEEEecCCCeeeeccCCCce-------eeeCC-------------CCCcccEEEEc-CCCCEEEEEecCCeEEEEEc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMK-------YIADP-------------TMHSMPAVTSS-PNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~-------~i~~~-------------~~~~i~~v~~s-pdg~~Lasgs~Dg~I~iwd~ 537 (1019)
.+.+.+|+|++..+++....... .+... +...+..++|+ |+|++|++++ ++.|.+|++
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 56778999999866543211111 01111 12258899999 9999999988 889999998
Q ss_pred cCcccccceeEEecccccc-ceEEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAG-YACSLDFSPDMSYLISGDADGKCY-IWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~-~V~~v~fspdg~~Lasgs~DG~I~-IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s 615 (1019)
.++. ...+..|. + .+..++|+ ||+.|++++.++.+. +||+.+++... +.+|...+.+++|+|+| .+|++
T Consensus 325 ~~~~----~~~~~~~~--~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG-~~la~ 395 (1045)
T 1k32_A 325 SGTY----VLKVPEPL--RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNG-KFAVV 395 (1045)
T ss_dssp TSSB----EEECSCCS--CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTS-SEEEE
T ss_pred CCCc----eEEccCCC--cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCC-CEEEE
Confidence 7653 22344443 3 68899999 999999999888899 99998876544 44788899999999998 68999
Q ss_pred EeCCCcEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccC-CCceeEEEeecC---------CCceEE
Q psy307 616 AGWDAATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLS-DSEQYALQFSET---------NNKNYI 685 (1019)
Q Consensus 616 ~s~Dg~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls-~~e~~al~~sd~---------~~~~~i 685 (1019)
++.++.|++| +....+.......+...+ ....++ ++..++....++ ....++
T Consensus 396 ~~~~~~v~~~-d~~tg~~~~~~~~~~~~v-----------------~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 396 ANDRFEIMTV-DLETGKPTVIERSREAMI-----------------TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp EETTSEEEEE-ETTTCCEEEEEECSSSCC-----------------CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ECCCCeEEEE-ECCCCceEEeccCCCCCc-----------------cceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 9999988654 554433222111111100 011122 222222222211 122233
Q ss_pred ecccccc--c--cCCceEEEEecCCccHHHHHhhcCCCchhhHH
Q psy307 686 TEKNRNE--I--KNGSVLRLAFSASKTADDILSKLSDKNASLEE 725 (1019)
Q Consensus 686 t~~~~~~--I--~ng~Vl~LafSPd~~a~~Ilt~~~d~~i~lw~ 725 (1019)
....+.. + +...+..++|+|++ +.|+..+.++..++|.
T Consensus 458 d~~~g~~~~l~~~~~~~~~~~~spdG--~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 458 DMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp ETTTTEEEECSCSSSBEEEEEECTTS--CEEEEEESCCCCCEEC
T ss_pred ECCCCcEEEeeCCCcccCCceEcCCC--CEEEEEecccCCcCcc
Confidence 3222221 1 35568889999999 6677777777766665
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.80 E-value=1e-17 Score=186.71 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=189.3
Q ss_pred CeeeeCCCCCceeeecCCCCCCccCCccceeeecc-CCC-CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 299 RSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEG-HTK-GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 299 r~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~g-H~~-~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
+.++++..++.|.+|+... .+.+..+.. +.. .+.+++|+|++..++++++.++.|.+||+.. ++.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCC-------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEE
Confidence 3577888899999998753 234555543 322 4889999998556677778889999999944 45555444
Q ss_pred c-c----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe------------CCCcEEEEEccCCCeEEEEEccccccE
Q psy307 377 G-H----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS------------MDCRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 377 g-h----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs------------~Dg~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
. + ...+.+++|+|+| ++|++++ .++.|.+||+ ..++....+.. ...+
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~-~~~~ 137 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDG--------------KTLAIYESPVRLELTHFEVQPTRVALYDA-ETLSRRKAFEA-PRQI 137 (337)
T ss_dssp CCBTTEEEECTTCEEECTTS--------------SEEEEEEEEEEECSSCEEECCCEEEEEET-TTTEEEEEEEC-CSSC
T ss_pred cCCcccccccccceEECCCC--------------CEEEEEecccccccccccccCceEEEEEC-CCCcEEEEEeC-CCCc
Confidence 2 2 2257788888888 4566664 5799999999 55566655554 4567
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCc-------------------
Q psy307 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDM------------------- 500 (1019)
Q Consensus 440 ~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~------------------- 500 (1019)
.+++|+|+|++++++ ++.|.+||+.+++.+..+........+.|+|++....+......
T Consensus 138 ~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 138 TMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred ceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 888999999988887 78999999999998887765442223367777764433211110
Q ss_pred -----eeeeC------------CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 501 -----KYIAD------------PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 501 -----~~i~~------------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
..+.+ .+...+..++++|+|++++++ ++.|.+||+.++.. ...+..+ ..+.+++|
T Consensus 216 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~---~~~~~~~---~~~~~~~~ 287 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS---IKRVPLP---HSYYSVNV 287 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE---EEEEECS---SCCCEEEE
T ss_pred ccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC---cceecCC---CceeeEEE
Confidence 01111 122345579999999999888 79999999987632 3334332 34678999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCC
Q psy307 564 SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 564 spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~ 598 (1019)
+|||++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99999999999999999999999999988876543
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=4.3e-17 Score=183.72 Aligned_cols=273 Identities=9% Similarity=0.055 Sum_probs=178.0
Q ss_pred CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC--CCeEEEEecCCCc-EEEEEecccCccE
Q psy307 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKER-RCVRTYYGHRQAV 382 (1019)
Q Consensus 306 ~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~--Dg~I~IWdl~~~~-~~~~~~~gh~~~V 382 (1019)
.+..+.+|......... ..+ ....+...+..++|+|+ +.+++++.. ++.|.+|++.... +.+..+..+...+
T Consensus 14 ~~~~i~v~~~d~~tg~~---~~~-~~~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTL---TND-GLLAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp SCCEEEEEEEETTTTEE---EEE-EEEEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEEEcCCCCeE---EEe-eeeeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 45677888765422110 111 23445677889999996 554444432 7999999994332 2445556677888
Q ss_pred eEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCe--EEEEEcc---------ccccEeEEEEecCCCE
Q psy307 383 RDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHR--CVRTYYG---------HRQAVRDICFNNTGTN 450 (1019)
Q Consensus 383 ~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~--~~~~l~~---------H~~~V~sl~fspdg~~ 450 (1019)
..++|+|+| ++|++++ .++.|.+|++...+. .+..+.. +...+.+++|+|+|+.
T Consensus 89 ~~~a~spdg--------------~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 89 AYVAVDEAR--------------QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp SEEEEETTT--------------TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred EEEEECCCC--------------CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 999999998 5666666 789999999954433 2222221 1234889999999996
Q ss_pred EEEEEcCCeEEEEECC-CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE-Eec
Q psy307 451 FISAGYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC-QSM 528 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las-gs~ 528 (1019)
+++...++.|.+||+. +++...... +. .........++|+|+|+++++ +..
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~-------~~--------------------~~~g~~p~~~~~spdg~~l~v~~~~ 207 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSV-------LT--------------------MEAGFGPRHLVFSPDGQYAFLAGEL 207 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEE-------EE--------------------CCTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeee-------EE--------------------cCCCCCCceEEECCCCCEEEEEeCC
Confidence 5566668899999998 444321110 00 011123446889999996655 567
Q ss_pred CCeEEEEEccCc-ccccceeEEeccccc----cceEEEEEcCCCCEE-EEEeCCCeEEEEeCCC---CceeeeeeccCCC
Q psy307 529 DNKILIFSALNR-FKLNRKKTFEGHMVA----GYACSLDFSPDMSYL-ISGDADGKCYIWDWKT---TKLFKKWKAHDGV 599 (1019)
Q Consensus 529 Dg~I~iwd~~~~-~~~~~~~~l~gh~~~----~~V~~v~fspdg~~L-asgs~DG~I~IWDl~t---~~~l~~l~~h~~~ 599 (1019)
++.|.+|++... ..+.....+...... ..+..++|+|||++| +++..++.|.+||+.. .+.+..+..+...
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~ 287 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF 287 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC
Confidence 889999998741 122222333322211 347889999999987 5556689999999973 2456666666667
Q ss_pred EEEEEEcCCCCcEEEEEeCC-CcEEEE
Q psy307 600 CISTLWHPHEPSKVVTAGWD-AATAKV 625 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~s~D-g~I~iw 625 (1019)
+.+++|+|++. +|++++.+ +.|.+|
T Consensus 288 ~~~~~~spdg~-~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 288 PRDFDLDPTEA-FVVVVNQNTDNATLY 313 (347)
T ss_dssp CCEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred cCeEEECCCCC-EEEEEEcCCCcEEEE
Confidence 89999999994 66666654 666554
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=4e-18 Score=212.13 Aligned_cols=301 Identities=8% Similarity=-0.034 Sum_probs=199.6
Q ss_pred CCCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCC---CeEEEEEcCCCCcEEEEeeCC---------Ce
Q psy307 292 DPTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTK---GISAIRWFPKSAHLLLSCSMD---------CR 359 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~---~V~~i~fspd~g~lLaSgs~D---------g~ 359 (1019)
..++++|+.+++ +.|+.+.+|+.... +....+.+|.. .|.+++|||| |++|++++.+ +.
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~g-------~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVETN-------TSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGC-------CCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCCC-------cEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceee
Confidence 467889996655 68999999987633 33456667765 4999999996 7788888764 78
Q ss_pred EEEEecCCCcE-EEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 360 VKLWEVYKERR-CVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 360 I~IWdl~~~~~-~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
|.+||+..... .+....+|...+..++||||| +.|+.++. +.|++||+. ++........+...
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG--------------~~la~~~~-~~i~~~~~~-~g~~~~~~~~~~~~ 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG--------------QQLIFIFE-NNIYYCAHV-GKQAIRVVSTGKEG 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSST--------------TCEEEEET-TEEEEESSS-SSCCEEEECCCBTT
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCC--------------CEEEEEEC-CeEEEEECC-CCceEEEecCCCCC
Confidence 89999954322 122223455568899999999 56676665 799999994 45555555544433
Q ss_pred E------------------eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECC
Q psy307 439 V------------------RDICFNNTGTNFISAGYDR----------------------------------YLKLWDTE 466 (1019)
Q Consensus 439 V------------------~sl~fspdg~~l~S~s~Dg----------------------------------~I~lWDl~ 466 (1019)
+ .+++|+|||++|++++.|+ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 3 7899999999999988653 79999999
Q ss_pred CCceEEEEec-------CCceEEEEEecCCCeeeeccC--------------CC-ceeee-CCCCCcc----cEEEEcCC
Q psy307 467 SGECISRFTS-------RKVAYCVKFHPDEDKQHLDIP--------------VD-MKYIA-DPTMHSM----PAVTSSPN 519 (1019)
Q Consensus 467 t~~~i~~~~~-------~~~v~~v~~~p~~~~~~~~~~--------------~~-~~~i~-~~~~~~i----~~v~~spd 519 (1019)
++++...+.. ...+..++|+|++..++.... .. ...+. ..+...+ ..++|+|+
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD 316 (723)
T ss_dssp SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence 9886555654 346788999999975533110 00 01111 1111222 37899999
Q ss_pred CCEEEE--EecCC------eEEEEE-ccCcccccceeEEeccccccceEE-EEEcCCCCEEEEEeCC---CeEEEEeCCC
Q psy307 520 NKWLAC--QSMDN------KILIFS-ALNRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDAD---GKCYIWDWKT 586 (1019)
Q Consensus 520 g~~Las--gs~Dg------~I~iwd-~~~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~D---G~I~IWDl~t 586 (1019)
|+.|+. +..++ .|.+|| ..++.. .....+..+. ..+.. ++|+|||++|+..+.+ +.++||++..
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 998775 44566 566777 333320 0012222221 22443 6999999999766555 7899999865
Q ss_pred Cc--eeeeeec---cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 587 TK--LFKKWKA---HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 587 ~~--~l~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.. ....+.. |...+..++|+|++..++++++..+
T Consensus 394 ~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 432 (723)
T 1xfd_A 394 VGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (723)
T ss_dssp STTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred CCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCC
Confidence 32 3444543 6677889999999965566655554
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=4.8e-17 Score=181.13 Aligned_cols=258 Identities=9% Similarity=-0.040 Sum_probs=183.8
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecc-cCc-cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQ-AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~-~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
.+|++++.++.|.+||+. .++.+..+.. +.. .+.+++|+|+|. .++++++.++.|.+||+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~l~v~~~~~~~v~~~d~~-~~ 66 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGR-------------IAYATVNKSESLVKIDLV-TG 66 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSS-------------EEEEEETTTTEEEEEETT-TC
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCCC-------------EEEEEeCCCCeEEEEECC-CC
Confidence 478999999999999994 4566666543 222 478888988884 355667778999999994 44
Q ss_pred eEEEEEc-cc----cccEeEEEEecCCCEEEEEE------------cCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 427 RCVRTYY-GH----RQAVRDICFNNTGTNFISAG------------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 427 ~~~~~l~-~H----~~~V~sl~fspdg~~l~S~s------------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
+.+..+. ++ ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.....+.+++|+|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 146 (337)
T 1pby_B 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG 146 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS
T ss_pred CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC
Confidence 4554443 22 23677899999999988886 5799999999999998888877788899999998
Q ss_pred Ceeeec--------cCCCce-eeeCCCCCcccEEEEcCCCCEEEEEecCC------------------------eEEEEE
Q psy307 490 DKQHLD--------IPVDMK-YIADPTMHSMPAVTSSPNNKWLACQSMDN------------------------KILIFS 536 (1019)
Q Consensus 490 ~~~~~~--------~~~~~~-~i~~~~~~~i~~v~~spdg~~Lasgs~Dg------------------------~I~iwd 536 (1019)
..+.+. ...... ...... .....+.++|+|..++..+.++ .|.+||
T Consensus 147 ~~l~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 147 SKLYGLGRDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp SCEEEESSSEEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred CEEEEeCCeEEEEECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 865543 111110 011111 1112337788888776554332 468999
Q ss_pred ccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 537 ALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 537 ~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
+.++... ...+..+. ..+.+++|+|||++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .+++++
T Consensus 226 ~~~~~~~--~~~~~~~~--~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~~~ 297 (337)
T 1pby_B 226 LETGEMA--MREVRIMD--VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG-STVWLG 297 (337)
T ss_dssp TTTCCEE--EEEEEECS--SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS-CEEEEE
T ss_pred CCCCCce--EeecCCCC--CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC-CEEEEE
Confidence 9876432 22333333 457889999999999988 789999999999988887754 356899999998 477778
Q ss_pred eCCCcEEEEecccee
Q psy307 617 GWDAATAKVQDANIV 631 (1019)
Q Consensus 617 s~Dg~I~iwwd~~i~ 631 (1019)
+.++.|.+| +....
T Consensus 298 ~~~~~i~v~-d~~~~ 311 (337)
T 1pby_B 298 GALGDLAAY-DAETL 311 (337)
T ss_dssp SBSSEEEEE-ETTTC
T ss_pred cCCCcEEEE-ECcCC
Confidence 889998665 54433
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=2.5e-17 Score=204.42 Aligned_cols=296 Identities=11% Similarity=0.067 Sum_probs=195.6
Q ss_pred CCeeeeCCCCCceeeecCCCCCCccCCccce-eeeccC-----------------CCCeEEEEEcCCCCcEEEEeeCCCe
Q psy307 298 GRSFLHPPHDVGTNLRSDTPPDRCFLPKTQV-HTWEGH-----------------TKGISAIRWFPKSAHLLLSCSMDCR 359 (1019)
Q Consensus 298 gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i-~~l~gH-----------------~~~V~~i~fspd~g~lLaSgs~Dg~ 359 (1019)
|..++....|+ | +|+...... + ..+..| ...|.+++|+|+ +.++++ .|+.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~-------~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~~~~ 102 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKS-------AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--TQGG 102 (706)
T ss_dssp TTEEEEEETTE-E-EEEC--------------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--ETTE
T ss_pred CCeEEEEeCCc-E-EEECCCCcE-------eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--ECCE
Confidence 66677766666 7 998753321 1 122222 257999999997 666655 3599
Q ss_pred EEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC----CeEEEEEccc
Q psy307 360 VKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----HRCVRTYYGH 435 (1019)
Q Consensus 360 I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~l~~H 435 (1019)
|++||+.. +++ ..+..+...+.+++|+||| +.|++ +.|+.|++||+... +........+
T Consensus 103 i~~~d~~~-~~~-~~l~~~~~~~~~~~~SpdG--------------~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~ 165 (706)
T 2z3z_A 103 LVGFDMLA-RKV-TYLFDTNEETASLDFSPVG--------------DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDG 165 (706)
T ss_dssp EEEEETTT-TEE-EEEECCTTCCTTCEECTTS--------------SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred EEEEECCC-Cce-EEccCCcccccCCcCCCCC--------------CEEEE-EECCeEEEEecCcccccCCCcEEeccCC
Confidence 99999944 443 3445567788999999999 46666 36799999999541 4444444444
Q ss_pred ccc--------------EeEEEEecCCCEEEEEE---------------------------------cCCeEEEEECCCC
Q psy307 436 RQA--------------VRDICFNNTGTNFISAG---------------------------------YDRYLKLWDTESG 468 (1019)
Q Consensus 436 ~~~--------------V~sl~fspdg~~l~S~s---------------------------------~Dg~I~lWDl~t~ 468 (1019)
... +.+++|+|||++|++++ .+..|.+||+.++
T Consensus 166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~ 245 (706)
T 2z3z_A 166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG 245 (706)
T ss_dssp BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence 333 48899999999999988 4478999999998
Q ss_pred ceEEEEe---cCCceEEEEEecCCCeeeeccC---------------CC--ceeeeC-CCCC---cccEEEEcC--CCCE
Q psy307 469 ECISRFT---SRKVAYCVKFHPDEDKQHLDIP---------------VD--MKYIAD-PTMH---SMPAVTSSP--NNKW 522 (1019)
Q Consensus 469 ~~i~~~~---~~~~v~~v~~~p~~~~~~~~~~---------------~~--~~~i~~-~~~~---~i~~v~~sp--dg~~ 522 (1019)
+...... ....+.+++|+|++..+++... .. ...+.. .... .+..++|+| +|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~ 325 (706)
T 2z3z_A 246 KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF 325 (706)
T ss_dssp EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence 8655442 2356789999999986655211 11 111111 1111 235689999 9999
Q ss_pred EEEEecCCeEEEEEcc-CcccccceeEEeccccccceEE-EEEcCCCCEEEEEeC-CC----eEEEEeCCCCceeeeeec
Q psy307 523 LACQSMDNKILIFSAL-NRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDA-DG----KCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~-~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~-DG----~I~IWDl~t~~~l~~l~~ 595 (1019)
+++++.||.+++|.+. ++ .....+..+. ..+.+ ++|+|||+.|+.++. ++ .|+.||+.+++ ...+.
T Consensus 326 l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~- 398 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTG---RLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT- 398 (706)
T ss_dssp EEEECTTSSCEEEEEETTS---CEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-
T ss_pred EEEEccCCccEEEEEECCC---CEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-
Confidence 9999999999999876 33 2234454543 44665 799999998766554 44 67778887776 34443
Q ss_pred cCCCEEEEEEcCCCCcEEEEEeCC---CcEEEEeccce
Q psy307 596 HDGVCISTLWHPHEPSKVVTAGWD---AATAKVQDANI 630 (1019)
Q Consensus 596 h~~~V~sl~~sp~~~~~l~s~s~D---g~I~iwwd~~i 630 (1019)
|...+.+++|+|++..++++++.+ +.|.+ |+...
T Consensus 399 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l-~d~~~ 435 (706)
T 2z3z_A 399 PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV-TNIGK 435 (706)
T ss_dssp CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE-EESSS
T ss_pred CCCceEEEEECCCCCEEEEEecCCCCCcEEEE-EECCC
Confidence 666799999999995444444444 34644 45443
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.77 E-value=2.2e-16 Score=176.18 Aligned_cols=267 Identities=8% Similarity=0.029 Sum_probs=180.4
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.+++...++.|.+|+... .+.+..+..+...+ +++|+|++..+++++..++.|.+||+.........+.
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDT-------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTT-------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcc-------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 345588888899999998753 24456666666777 9999997444555555699999999954433266677
Q ss_pred ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC---cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 377 GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC---RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+..++.+++|+|+| ++|+++..++ .|.+||+ ..+..+..+..+ ....+++|+|+|+++++
T Consensus 81 ~~~~~~~~~~~s~dg--------------~~l~~~~~~~~~~~i~v~d~-~~~~~~~~~~~~-~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 81 EGQSSMADVDITPDD--------------QFAVTVTGLNHPFNMQSYSF-LKNKFISTIPIP-YDAVGIAISPNGNGLIL 144 (331)
T ss_dssp ECSSCCCCEEECTTS--------------SEEEECCCSSSSCEEEEEET-TTTEEEEEEECC-TTEEEEEECTTSSCEEE
T ss_pred cCCCCccceEECCCC--------------CEEEEecCCCCcccEEEEEC-CCCCeEEEEECC-CCccceEECCCCCEEEE
Confidence 676666669999998 5666555443 8999999 555666665543 44689999999986555
Q ss_pred E-EcCCe-EEEEECCCCceE-----EEEecCCceEEEEEecCCCeeeecc-CCCceeeeC-------------CCCCccc
Q psy307 454 A-GYDRY-LKLWDTESGECI-----SRFTSRKVAYCVKFHPDEDKQHLDI-PVDMKYIAD-------------PTMHSMP 512 (1019)
Q Consensus 454 ~-s~Dg~-I~lWDl~t~~~i-----~~~~~~~~v~~v~~~p~~~~~~~~~-~~~~~~i~~-------------~~~~~i~ 512 (1019)
+ ..++. |.+|++.....+ ..+.....+..++|+|++....+.. ......+.+ .....+.
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 224 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG 224 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCc
Confidence 4 55588 999998764432 2334456788999999998554411 111111111 1234557
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeEEecc----c-cccceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy307 513 AVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGH----M-VAGYACSLDFSPDMSYLISGD-ADGKCYIWDWK 585 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh----~-~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~ 585 (1019)
.++|+|+|+++++++ .++.|.+||+.++.. ..+..+..+ . ....+..++|+|||++|++++ .++.|.+||+.
T Consensus 225 ~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 225 TIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 899999999776655 578899999987633 112232222 1 001124589999999886655 46699999997
Q ss_pred CCc
Q psy307 586 TTK 588 (1019)
Q Consensus 586 t~~ 588 (1019)
+..
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 654
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.77 E-value=3.9e-16 Score=175.30 Aligned_cols=246 Identities=11% Similarity=0.104 Sum_probs=178.0
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeC-------CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSM-------DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~-------Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
....+..++|+|+ +..+++++. ++.|.+||.. +++.+..+.. ...+..++|+|+|. .
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~-------------~ 102 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHN-DLKPFGATINNTTQ-------------T 102 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEE-SSCCCSEEEETTTT-------------E
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEec-CCCcceEEECCCCC-------------E
Confidence 3457889999997 555555552 6799999994 4555555543 33467788888873 4
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccc---------cEeEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQ---------AVRDICFNNTGTNFISAG--YDRYLKLWDTESGECISRFT 475 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~---------~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~~i~~~~ 475 (1019)
+++++..++.|.+||+ .+++.+..+..+.. .+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.
T Consensus 103 l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDA-KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEEETTTTEEEEEET-TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCEEEEEeC-CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 5666677899999999 45556666655432 278899999999877776 47899999999988776654
Q ss_pred cCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc--c
Q psy307 476 SRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH--M 553 (1019)
Q Consensus 476 ~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh--~ 553 (1019)
.. ...+..++++|+|+++++++.++.|.+||+.++... ..+... .
T Consensus 182 ~~------------------------------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~ 228 (353)
T 3vgz_A 182 NT------------------------------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL---SRKKLLDDG 228 (353)
T ss_dssp CC------------------------------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE---EEEECCCSS
T ss_pred CC------------------------------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE---EEEEcCCCC
Confidence 21 122456778899999999999999999999876433 333221 1
Q ss_pred cccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 554 VAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
....+.+++|+|+|+++++++. ++.|.+||+.+++.+..+..+.. .+++|+|++..++++...++.|.+| +....+
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~-d~~~~~ 305 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVI-DAKSYK 305 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEE-ETTTTE
T ss_pred CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEE-ECCCCe
Confidence 1245788999999998776665 48999999999999888876543 5799999996566666678888655 544333
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.8e-16 Score=177.63 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=184.7
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.....++.++++..++.|.+|+... .+.+.++..+. ..+..++|+|++..++++++.++.|.+||+. +++.
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~ 77 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVAS-------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKN 77 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTT-------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEE
T ss_pred cccCCCEEEEEeCCCCeEEEEECCC-------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcE
Confidence 3456788899999999999998753 24455665443 3688999999754566677789999999994 4555
Q ss_pred EEEecc-c-----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC------------CcEEEEEccCCC--eEEEE
Q psy307 372 VRTYYG-H-----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD------------CRVKLWEVYKEH--RCVRT 431 (1019)
Q Consensus 372 ~~~~~g-h-----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D------------g~I~IWDl~~~~--~~~~~ 431 (1019)
+..+.. + ...+.+++|+|+| ++|++++.+ +.|.+||+.... ..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDG--------------KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTS--------------SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred EEEEEcccccccccccccceEECCCC--------------CEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 555543 2 2337888899988 566666654 899999995422 22233
Q ss_pred EccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC-------------------------ceEEEEEe
Q psy307 432 YYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK-------------------------VAYCVKFH 486 (1019)
Q Consensus 432 l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~-------------------------~v~~v~~~ 486 (1019)
+. +...+.+++|+|+|+ +++++ +.|.+||+.+++.+..+.... .+.++.++
T Consensus 144 ~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 144 FP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred cc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 33 334688999999999 55553 449999999999888776543 34556666
Q ss_pred cCCCee-----------eeccCCCce--eeeCCCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEecc
Q psy307 487 PDEDKQ-----------HLDIPVDMK--YIADPTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH 552 (1019)
Q Consensus 487 p~~~~~-----------~~~~~~~~~--~i~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh 552 (1019)
+++... .++...... .........+..++++| +|++++++ ++.|.+||+.++.. ...+...
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~---~~~~~~~ 294 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL---IKAANLD 294 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE---EEEEECS
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE---EEEEcCC
Confidence 543211 001110000 00111334567889999 99999888 89999999987632 2333322
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
..+.+++|+|+|++|++++.++.|.+||+.+++.+..++.+
T Consensus 295 ---~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 ---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ---CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 33668999999999988888999999999999988887654
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.76 E-value=2.6e-17 Score=204.71 Aligned_cols=259 Identities=7% Similarity=-0.005 Sum_probs=170.3
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc---cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ---AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~---~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
.+.+++|+|+ |+++++ +.||+|++||+. ++++...+.+|.. .|.+++||||| ++|++++.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg--------------~~l~~~~~ 80 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR--------------EYALFSYN 80 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS--------------SEEEEEES
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC--------------CEEEEEec
Confidence 4677899997 566666 789999999994 4455666776665 49999999999 56777765
Q ss_pred C---------CcEEEEEccCCCe-EEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-Cce--
Q psy307 414 D---------CRVKLWEVYKEHR-CVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVA-- 480 (1019)
Q Consensus 414 D---------g~I~IWDl~~~~~-~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v-- 480 (1019)
+ +.|.+||+..... .+....+|...+.+++|||||+.|++++. +.|++||+.+++.......+ ..+
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred CccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 4 7888999954432 12222345556889999999999999886 89999999998876655432 212
Q ss_pred ----------------EEEEEecCCCeeeeccCC----Cceee---eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 481 ----------------YCVKFHPDEDKQHLDIPV----DMKYI---ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 481 ----------------~~v~~~p~~~~~~~~~~~----~~~~i---~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
.++.|+|++..+++.... ....+ .......+..+.++++|.. ..+..|++||+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~ 235 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGL 235 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEES
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEEC
Confidence 456666666655442110 00000 0001122444555555432 22348999999
Q ss_pred cCcccccceeEEeccc----cccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeeeeec-cCCCEE----EEE
Q psy307 538 LNRFKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTTKLFKKWKA-HDGVCI----STL 604 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~~~l~~l~~-h~~~V~----sl~ 604 (1019)
.++.. ...+..+. ....+.+++|||||++|++.+. ++.|++||+.+++....+.. |.+.+. +++
T Consensus 236 ~~~~~---~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 236 NGPTH---DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp SSSCC---CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred CCCce---eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence 87632 23333321 1256889999999999877653 35799999999987776654 334443 789
Q ss_pred EcCCCCcEEEE-EeCCC
Q psy307 605 WHPHEPSKVVT-AGWDA 620 (1019)
Q Consensus 605 ~sp~~~~~l~s-~s~Dg 620 (1019)
|+|+|..++++ +..|+
T Consensus 313 ~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp ECTTSCSEEEEEEECCS
T ss_pred EcCCCCeEEEEEecccC
Confidence 99999655544 55666
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=7e-17 Score=188.78 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC----------cEEEE----EecccCccEeEEEEcCCCCceeEEEeec
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----------RRCVR----TYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~----------~~~~~----~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
..++.++++++ +.++++|+.|| |+||+...- ..... ....|...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---------- 104 (434)
T 2oit_A 37 ERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---------- 104 (434)
T ss_dssp SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS----------
T ss_pred CCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC----------
Confidence 36788999996 67888888888 899875210 01100 112345678888888887
Q ss_pred CCCCcEEE----EEeCCCcEEEEEccCC-----C-----eEEEEEccccccEeEEEEecC-CCEEEEEEcCCeEEEEECC
Q psy307 402 PKSAHLLL----SCSMDCRVKLWEVYKE-----H-----RCVRTYYGHRQAVRDICFNNT-GTNFISAGYDRYLKLWDTE 466 (1019)
Q Consensus 402 p~~~~~L~----sgs~Dg~I~IWDl~~~-----~-----~~~~~l~~H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~ 466 (1019)
++|+ +|+.|+.|+|||+... . ..+..+.+|...|.+++|+|+ +.+|++++.||+|++||++
T Consensus 105 ----~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 105 ----LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp ----CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred ----CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 5666 7889999999998543 1 135667789999999999998 7899999999999999999
Q ss_pred CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce
Q psy307 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK 546 (1019)
Q Consensus 467 t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 546 (1019)
++..+..... +...+.+++|+|+|++|++|+.||.|++||++ +. ..
T Consensus 181 ~~~~~~~~~~------------------------------~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---~~ 226 (434)
T 2oit_A 181 ETVKVCATLP------------------------------STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---EK 226 (434)
T ss_dssp SSEEEEEEEC------------------------------GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---EE
T ss_pred CCcceeeccC------------------------------CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---cc
Confidence 8754332221 23457788889999999999999999999997 21 22
Q ss_pred eEEecccc-----ccceEEEEEcCCCCEEEEE-eCCC------eEEEEeCCCC
Q psy307 547 KTFEGHMV-----AGYACSLDFSPDMSYLISG-DADG------KCYIWDWKTT 587 (1019)
Q Consensus 547 ~~l~gh~~-----~~~V~~v~fspdg~~Lasg-s~DG------~I~IWDl~t~ 587 (1019)
..+..|.. ...+.+++|++++.++++. +.|| .+++|++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33333321 1368999999999887553 3443 3899999765
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=2.5e-15 Score=170.31 Aligned_cols=278 Identities=9% Similarity=0.049 Sum_probs=175.2
Q ss_pred CCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCC----CeEEEEecCCC-cE--EEEEecc
Q psy307 305 PHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKE-RR--CVRTYYG 377 (1019)
Q Consensus 305 ~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~D----g~I~IWdl~~~-~~--~~~~~~g 377 (1019)
+.++.|.+|........ .+.+..+ |...+..++|+|+ +++|++++.+ +.|.+|++... +. .+.....
T Consensus 24 ~~~~~i~~~~~d~~~g~---~~~~~~~--~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~ 97 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGE---SLPLSDA--EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT 97 (361)
T ss_dssp SSCCEEEEEEEETTTCC---EEEEEEE--ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCEEEEEEeCCCCC---EEEeecc--cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc
Confidence 34678888876532211 1223333 7778889999996 7788888775 89999998543 33 3333444
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEE---E--EEcc--------ccccEeEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCV---R--TYYG--------HRQAVRDIC 443 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~---~--~l~~--------H~~~V~sl~ 443 (1019)
+......+++ ++ ++|++++ .++.|.+|++...+... . ...+ +...+.+++
T Consensus 98 ~~~~p~~~~~--dg--------------~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 98 MGADPCYLTT--NG--------------KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp SSSCEEEEEE--CS--------------SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred CCCCcEEEEE--CC--------------CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 5555666666 55 4455554 68999999996443221 1 1111 223467899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCce------EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 444 FNNTGTNFISAGY-DRYLKLWDTESGEC------ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 444 fspdg~~l~S~s~-Dg~I~lWDl~t~~~------i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
|+|+|+++++++. ++.|.+|++..... +.... .. .............++|
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~---~~--------------------~~~~~~~~~~~~~~~~ 218 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG---TP--------------------EAFKVAPGSGPRHLIF 218 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE---EE--------------------EEEECCTTCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc---cc--------------------cceecCCCCCCeEEEE
Confidence 9999997766654 78999998875431 11000 00 0001111233457889
Q ss_pred cCCCCEEEEEe-cCCeEEEEEccCcccccceeEEeccc-cccceEEEEEcCCCCEEEEEeC--CCeEEEEeCC--CCc--
Q psy307 517 SPNNKWLACQS-MDNKILIFSALNRFKLNRKKTFEGHM-VAGYACSLDFSPDMSYLISGDA--DGKCYIWDWK--TTK-- 588 (1019)
Q Consensus 517 spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~-~~~~V~~v~fspdg~~Lasgs~--DG~I~IWDl~--t~~-- 588 (1019)
+|+|+++++++ .++.|.+|++.++. +.....+.... ....+..++|+|||++|++++. ++.|.+|++. +++
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred cCCCCEEEEEcCCCCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 99999887777 68999999998542 22223332221 1134678999999999876665 4899999985 454
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE-eccce
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV-QDANI 630 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw-wd~~i 630 (1019)
.+..+.. ...+.+++|+|++. +|++++ .++.|.+| ++...
T Consensus 298 ~~~~~~~-g~~~~~~~~spdg~-~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 298 KVGYQLT-GIHPRNFIITPNGK-YLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEEC-SSCCCEEEECTTSC-EEEEEETTTTEEEEEEECTTT
T ss_pred EeeEecC-CCCCceEEECCCCC-EEEEEECCCCCEEEEEEECCC
Confidence 4444544 45678999999995 555555 67777665 44433
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=9.2e-16 Score=171.16 Aligned_cols=230 Identities=10% Similarity=0.157 Sum_probs=157.5
Q ss_pred cEEEEeeCCCeEEEEecCCCc--EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC-CcEEEEEccC-
Q psy307 349 HLLLSCSMDCRVKLWEVYKER--RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD-CRVKLWEVYK- 424 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~--~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D-g~I~IWDl~~- 424 (1019)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+| ++|++++.+ +.|.+|++..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg--------------~~l~~~~~~~~~v~~~~~~~~ 70 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDK--------------RYLYVGVRPEFRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTS--------------SEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCC--------------CEEEEeecCCCeEEEEEecCC
Confidence 345555889999999995333 33333 4577788999999998 567777776 9999999952
Q ss_pred CC--eEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCc---eEEEEecCCceEEEEEecCCCeeeeccCC
Q psy307 425 EH--RCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGE---CISRFTSRKVAYCVKFHPDEDKQHLDIPV 498 (1019)
Q Consensus 425 ~~--~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~---~i~~~~~~~~v~~v~~~p~~~~~~~~~~~ 498 (1019)
.+ ..+..+..+. .+.+++|+|+|+++++++. ++.|.+||+..+. .+..+..
T Consensus 71 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------- 127 (343)
T 1ri6_A 71 DGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---------------------- 127 (343)
T ss_dssp TCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred CCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC----------------------
Confidence 22 2344444444 8899999999998877775 8899999985332 2222211
Q ss_pred CceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCccccccee--EEeccccccceEEEEEcCCCCEEEEEe-
Q psy307 499 DMKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKK--TFEGHMVAGYACSLDFSPDMSYLISGD- 574 (1019)
Q Consensus 499 ~~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~--~l~gh~~~~~V~~v~fspdg~~Lasgs- 574 (1019)
...+.+++|+|+|+++++++ .++.|.+||+.+........ .+..+. ...+..++|+|+|+++++++
T Consensus 128 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 128 ---------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp ---------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEET
T ss_pred ---------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeC
Confidence 12366788999999888877 89999999998622222222 222222 24578899999999776554
Q ss_pred CCCeEEEEeCC--CCce--eeeee----cc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 575 ADGKCYIWDWK--TTKL--FKKWK----AH--DGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 575 ~DG~I~IWDl~--t~~~--l~~l~----~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++.|.+||+. +++. ...+. ++ ...+.+++|+|++..++++++.|+.|.+|.
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 78999999995 3433 22222 11 235778999999965555676888886653
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=2.4e-16 Score=191.19 Aligned_cols=261 Identities=12% Similarity=0.061 Sum_probs=182.3
Q ss_pred CCCCCCeeeeCCC-CCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeC---CCeEEEEecCC-
Q psy307 294 TDYQGRSFLHPPH-DVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSM---DCRVKLWEVYK- 367 (1019)
Q Consensus 294 ~~~~gr~~~~~~~-D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~---Dg~I~IWdl~~- 367 (1019)
++++|+.++.++. |+.++||.... .....+..|. ..|.+++|+|+ .++++++. +...+||.+..
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~~--------g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYDG--------GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEET--------TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred cCCCCCeEEEEEccCCceeEEEEcC--------CCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence 5678999998876 99999998532 2334555565 68999999996 78887775 56667766533
Q ss_pred -CcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec
Q psy307 368 -ERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN 446 (1019)
Q Consensus 368 -~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp 446 (1019)
.+... .+..+ ..+...+|+|+|. ..+++++.++.+.+||+ .++.+......+. .+++|+|
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~-------------~~~~~s~~~~~~~l~d~-~~g~~~~l~~~~~---~~~~~sp 159 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGE-------------AVVFTGATEDRVALYAL-DGGGLRELARLPG---FGFVSDI 159 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSS-------------CEEEEEECSSCEEEEEE-ETTEEEEEEEESS---CEEEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCC-------------eEEEEecCCCCceEEEc-cCCcEEEeecCCC---ceEEECC
Confidence 33322 22222 2234557777764 44455555555569999 4455444443333 7889999
Q ss_pred CCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE
Q psy307 447 TGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW 522 (1019)
Q Consensus 447 dg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~ 522 (1019)
||++|++++.| +.|++||+.+++... +.. +...+..++|+|||++
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~------------------------------~~~~~~~~~~SpDG~~ 208 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDS------------------------------GEGSFSSASISPGMKV 208 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCCEE-ECC------------------------------SSCEEEEEEECTTSCE
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCceE-eec------------------------------CCCccccceECCCCCE
Confidence 99999988887 789999999887542 221 1233456788999999
Q ss_pred EEEEecCC--eEEEEEccCcccccceeEEeccccccceEEEE--------EcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 523 LACQSMDN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLD--------FSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 523 Lasgs~Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~--------fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
|+++..++ .|++||+.++.. . .+.+|. ..+..++ |+|||.++++++.||+++||++ ++...
T Consensus 209 l~~~~~~~~~~i~~~d~~~~~~---~-~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~- 279 (582)
T 3o4h_A 209 TAGLETAREARLVTVDPRDGSV---E-DLELPS--KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE- 279 (582)
T ss_dssp EEEEECSSCEEEEEECTTTCCE---E-ECCCSC--SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-
T ss_pred EEEccCCCeeEEEEEcCCCCcE---E-EccCCC--cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-
Confidence 99888888 899999987632 2 444443 3344455 9999999999999999999999 66554
Q ss_pred eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 593 WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
.+.+.|.+++|+ ++ .++++++.+.+-..+|.
T Consensus 280 --~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 280 --APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp --CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEE
T ss_pred --cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEE
Confidence 344678899999 76 68888888876444443
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=5.5e-16 Score=168.35 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=155.1
Q ss_pred EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE
Q psy307 353 SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY 432 (1019)
Q Consensus 353 Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l 432 (1019)
+++.|+.|++||+.. ++. ..+..|...|.+++|+|+| ++|++++ ++.|++||+...+......
T Consensus 17 ~~~~~~~i~~~d~~~-~~~-~~~~~~~~~v~~~~~spdg--------------~~l~~~~-~~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-RKM-RVVWQTPELFEAPNWSPDG--------------KYLLLNS-EGLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp -CCCCEEEEEEETTT-TEE-EEEEEESSCCEEEEECTTS--------------SEEEEEE-TTEEEEEESSSCCSCEECC
T ss_pred CCCcceeEEEEeCCC-Cce-eeeccCCcceEeeEECCCC--------------CEEEEEc-CCeEEEEeCCCCCCceEec
Confidence 457899999999944 443 3566788999999999999 5777766 8899999995425555555
Q ss_pred ccc-cccEeEEEEecCCCEEEEEEc--CCeEEEE--ECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCC
Q psy307 433 YGH-RQAVRDICFNNTGTNFISAGY--DRYLKLW--DTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPT 507 (1019)
Q Consensus 433 ~~H-~~~V~sl~fspdg~~l~S~s~--Dg~I~lW--Dl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~ 507 (1019)
.+| ...|.+++|+|+|++|++++. ++.+.|| |+.++.. ..+...
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~------------------------------ 128 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN------------------------------ 128 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS------------------------------
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC------------------------------
Confidence 565 478899999999999999993 3455555 4444432 111111
Q ss_pred CCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q psy307 508 MHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWK 585 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~ 585 (1019)
..+..++|+|+|++|+ +++.++.+.+|++.... .....+..+. ..+.+++|+|+|++|+.++ .++.+.||++.
T Consensus 129 -~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 129 -LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp -SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred -CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCC--CccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 1255678889999887 77889999999875321 1123344443 5689999999999888766 58999999986
Q ss_pred -CCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 586 -TTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 586 -t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.+..+..+..|...+.+++|+|++ .+|++++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~ 237 (297)
T 2ojh_A 204 VDGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYD 237 (297)
T ss_dssp TTSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEE
T ss_pred CCCCCcEEEecCCcccCCeEECCCC-CEEEEEEcC
Confidence 566677888888889999999998 577777765
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=1.3e-16 Score=193.59 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=168.5
Q ss_pred CCCeEEEEEcCCCCcEEEEeeC-CCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 335 TKGISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~-Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+|++++|+|| |+.|++++. ||+++||++ .++.+.+ +..|. ..|..++|+|| +++++++
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~~~-lt~~~~~~~~~~~~spd---------------~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGETVK-LNREPINSVLDPHYGVG---------------RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEEEE-CCSSCCSEECEECTTCS---------------EEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCcEe-eecccccccccccCCCC---------------eEEEEec
Confidence 557999999997 677777766 999999998 4555444 44444 57877777765 3666666
Q ss_pred C---CCcEEEEEccC--CCeEEEEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 413 M---DCRVKLWEVYK--EHRCVRTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 413 ~---Dg~I~IWDl~~--~~~~~~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
. +....+|.+.. .+... .+..+. .+...+|+|+|+. +++++.++.+.+||+.++++.......
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~--------- 151 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--------- 151 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES---------
T ss_pred cCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC---------
Confidence 5 55667776644 44333 332222 2345688888864 334444455559999888654433211
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..+++|+|||++|++++.+ +.|++||+.++. ...+.+|. +.+..++
T Consensus 152 ------------------------~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~--~~~~~~~ 201 (582)
T 3o4h_A 152 ------------------------GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGE--GSFSSAS 201 (582)
T ss_dssp ------------------------SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----CEEECCSS--CEEEEEE
T ss_pred ------------------------CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCC--Cccccce
Confidence 0467889999999988877 789999988763 23556665 6689999
Q ss_pred EcCCCCEEEEEeCCC--eEEEEeCCCCceeeeeeccCCCEEEEE--------EcCCCCcEEEEEeCCCcEEEEec
Q psy307 563 FSPDMSYLISGDADG--KCYIWDWKTTKLFKKWKAHDGVCISTL--------WHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 563 fspdg~~Lasgs~DG--~I~IWDl~t~~~l~~l~~h~~~V~sl~--------~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
|||||++|++++.+| .|++||+.+++.. .+..|...+.+++ |+|+| .++++++.||++.+|.-
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 999999999888888 8999999999887 7778877777677 99999 89999999999877644
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.70 E-value=3.7e-16 Score=193.93 Aligned_cols=258 Identities=10% Similarity=0.108 Sum_probs=174.6
Q ss_pred eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE-EEecccC-----------------ccEeEEEEcCCCCceeEEEe
Q psy307 338 ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV-RTYYGHR-----------------QAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 338 V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~-~~~~gh~-----------------~~V~~i~fspdg~~~vs~i~ 399 (1019)
+..+.|+ +..+++++.|| | +||+.++ +.+ ..+..|. ..|.+++|+|++
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-------- 93 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-------- 93 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTTT--------
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCCC--------
Confidence 5557787 34566677788 8 9999543 332 3333333 357777777763
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-----CceEEEE
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-----GECISRF 474 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-----~~~i~~~ 474 (1019)
.++++ .++.|++||+. ++.. ..+..+...+.+++|+|||++|+++ .|+.|++||+.+ ++.....
T Consensus 94 ------~~~~~--~~~~i~~~d~~-~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~ 162 (706)
T 2z3z_A 94 ------LVVLF--TQGGLVGFDML-ARKV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT 162 (706)
T ss_dssp ------EEEEE--ETTEEEEEETT-TTEE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred ------eEEEE--ECCEEEEEECC-CCce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence 44444 35999999994 4444 3445567778999999999999885 789999999998 8776544
Q ss_pred ecCCc---------------eEEEEEecCCCeeeecc---------------------------------CCCceee---
Q psy307 475 TSRKV---------------AYCVKFHPDEDKQHLDI---------------------------------PVDMKYI--- 503 (1019)
Q Consensus 475 ~~~~~---------------v~~v~~~p~~~~~~~~~---------------------------------~~~~~~i--- 503 (1019)
..... +.++.|+|++..+++.. ......+
T Consensus 163 ~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 163 IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 43332 47899999998766532 0001111
Q ss_pred --------e--CCCCCcccEEEEcCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcC--C
Q psy307 504 --------A--DPTMHSMPAVTSSPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP--D 566 (1019)
Q Consensus 504 --------~--~~~~~~i~~v~~spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp--d 566 (1019)
. ..+...+..++|+|+|++|++++.++ .|.+||+.++.....+...........+.+++|+| |
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC
Confidence 1 12334577899999999999988776 99999998762222221111110001235689999 9
Q ss_pred CCEEEEEeCCCeEEEEeCC-CCceeeeeeccCCCEEE-EEEcCCCCcEEEEEeCCC
Q psy307 567 MSYLISGDADGKCYIWDWK-TTKLFKKWKAHDGVCIS-TLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h~~~V~s-l~~sp~~~~~l~s~s~Dg 620 (1019)
|+++++++.||.++||++. ++..+..+..|...+.+ ++|+|++..++++++.++
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 9999999999999999886 67778888888888877 799999965555665555
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.70 E-value=2.2e-15 Score=168.68 Aligned_cols=235 Identities=9% Similarity=0.044 Sum_probs=157.6
Q ss_pred EEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEE
Q psy307 341 IRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKL 419 (1019)
Q Consensus 341 i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~I 419 (1019)
+++++ ++.++++++.++.|.+||+ .+++.+..+..+. ..+..++|+|+|. .++++++.++.|.+
T Consensus 5 ~~~~~-~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~~~v~~~~~~~i~~ 69 (349)
T 1jmx_B 5 PALKA-GHEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNR-------------TAYVLNNHYGDIYG 69 (349)
T ss_dssp CCCCT-TCEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSS-------------EEEEEETTTTEEEE
T ss_pred ccccC-CCEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCC-------------EEEEEeCCCCcEEE
Confidence 45666 5789999999999999999 4556666665443 2567888888873 34566677899999
Q ss_pred EEccCCCeEEEEEcc-c-----cccEeEEEEecCCCEEEEEEcC------------CeEEEEECCCCce---EEEEecCC
Q psy307 420 WEVYKEHRCVRTYYG-H-----RQAVRDICFNNTGTNFISAGYD------------RYLKLWDTESGEC---ISRFTSRK 478 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~-H-----~~~V~sl~fspdg~~l~S~s~D------------g~I~lWDl~t~~~---i~~~~~~~ 478 (1019)
||+ .+++....+.. + ...+.+++|+|+|+++++++.+ +.|.+||+.+++. +..+....
T Consensus 70 ~d~-~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 148 (349)
T 1jmx_B 70 IDL-DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 148 (349)
T ss_dssp EET-TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EeC-CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC
Confidence 999 45555555543 2 2347889999999999998866 8999999987543 23333333
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc-------------
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR------------- 545 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~------------- 545 (1019)
.+.+++|+| +|+ +++++ +.|.+||+.++.....
T Consensus 149 ~~~~~~~s~-------------------------------dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
T 1jmx_B 149 QVYLMRAAD-------------------------------DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSA 194 (349)
T ss_dssp SCCCEEECT-------------------------------TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred cccceeECC-------------------------------CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccC
Confidence 344444544 444 22222 2244454443311100
Q ss_pred ----------------------------------------------------eeEEeccccccceEEEEEcC-CCCEEEE
Q psy307 546 ----------------------------------------------------KKTFEGHMVAGYACSLDFSP-DMSYLIS 572 (1019)
Q Consensus 546 ----------------------------------------------------~~~l~gh~~~~~V~~v~fsp-dg~~Las 572 (1019)
...+.. ....+.+++|+| ||+++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 195 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEE
T ss_pred ccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--CCCcceeeEecCCCCCEEEE
Confidence 000011 113467889999 9999998
Q ss_pred EeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
+ ++.|.+||+.+++.+..+..+ ..+.+++|+|++. .|++++.++.|.+| +....+
T Consensus 273 ~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~-~l~~~~~~~~v~v~-d~~~~~ 327 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD-KLYLGGTFNDLAVF-NPDTLE 327 (349)
T ss_dssp E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS-CEEEESBSSEEEEE-ETTTTE
T ss_pred E--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC-EEEEecCCCeEEEE-eccccc
Confidence 8 889999999999988887644 3467999999984 66667888888665 554433
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.69 E-value=2.8e-16 Score=183.64 Aligned_cols=216 Identities=11% Similarity=0.102 Sum_probs=148.6
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC----------Ce
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE----------HR 427 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~----------~~ 427 (1019)
+.|++|+.... .....++.+++++++ .++++++.|+ +++|+.... ..
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~--------------~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~ 79 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKY--------------GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNK 79 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTT--------------TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTC
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCC--------------CEEEEECCCE-EEEEEchHhhhhcccccCccc
Confidence 46777764211 123457888888877 6888898888 899876311 01
Q ss_pred EEE----EEccccccEeEEEEecCCCEEE----EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 428 CVR----TYYGHRQAVRDICFNNTGTNFI----SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 428 ~~~----~l~~H~~~V~sl~fspdg~~l~----S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
... ....|...|.+++|+|+|++|+ +++.|++|+|||++++.... ......+.
T Consensus 80 ~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-~~~~~~~~------------------ 140 (434)
T 2oit_A 80 IVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-KQQKRPFA------------------ 140 (434)
T ss_dssp EEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-CSSCCCSE------------------
T ss_pred ccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-cCCcceee------------------
Confidence 110 1123567899999999999999 78889999999986541000 00000000
Q ss_pred ceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe
Q psy307 500 MKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK 578 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~ 578 (1019)
.......|...|.+++|+|+ +.+|++++.||+|++||++++. ......+|. ..|.+++|+|+|++|++|+.||+
T Consensus 141 ~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~---~~~~~~~~~--~~v~~v~wspdg~~lasgs~dg~ 215 (434)
T 2oit_A 141 YHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV---KVCATLPST--VAVTSVCWSPKGKQLAVGKQNGT 215 (434)
T ss_dssp EEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE---EEEEEECGG--GCEEEEEECTTSSCEEEEETTSC
T ss_pred eeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc---ceeeccCCC--CceeEEEEcCCCCEEEEEcCCCc
Confidence 01112234567888999997 7899999999999999998762 234445565 67999999999999999999999
Q ss_pred EEEEeCCCCceeeeeecc-------CCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 579 CYIWDWKTTKLFKKWKAH-------DGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 579 I~IWDl~t~~~l~~l~~h-------~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
|++||++ ++....+..| ...|.+++|++++...++.++.||.
T Consensus 216 v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 216 VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 9999998 6666655544 2379999999987433334545554
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=1.5e-15 Score=173.44 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=185.8
Q ss_pred ccceeeeccCCCCeEE-----EEEcCCCCcEEEEeeC-CC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeE
Q psy307 325 KTQVHTWEGHTKGISA-----IRWFPKSAHLLLSCSM-DC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFIS 396 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~-----i~fspd~g~lLaSgs~-Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs 396 (1019)
...+..+..|...+.. .+|+|| |+.|+.++. +| .|.+||+ .+++......++...+..+.|+|||
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg----- 92 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDD----- 92 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTS-----
T ss_pred CcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCC-----
Confidence 3456677788776666 889997 565665555 77 4788888 4556666666676666678899999
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEE--EecCCCEEEEEE-------------------
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDIC--FNNTGTNFISAG------------------- 455 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~--fspdg~~l~S~s------------------- 455 (1019)
+.|+.++.++.|++||+. +++....+..+...+.... ++++++.++...
T Consensus 93 ---------~~l~~~~~~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 93 ---------DALFYVKDGRNLMRVDLA-TLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp ---------SEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred ---------CEEEEEeCCCeEEEEECC-CCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 688888889999999994 4555555555665554444 489999887432
Q ss_pred ---cCCeEEEEECCCCceEEEEecCCceEEEEEec-CCCeeeeccCC------CceeeeC----------CCC--CcccE
Q psy307 456 ---YDRYLKLWDTESGECISRFTSRKVAYCVKFHP-DEDKQHLDIPV------DMKYIAD----------PTM--HSMPA 513 (1019)
Q Consensus 456 ---~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~------~~~~i~~----------~~~--~~i~~ 513 (1019)
.+..|.+||+.+++..........+..+.|+| ++..+++.... ...+..+ ... ..+..
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 34689999999998776666667788999999 88765542211 0111111 111 23557
Q ss_pred EEEcCCCCEEEEEec-CC----eEEEEEccCcccccceeEEeccccc-cceEEEEEcCCCCEEEEE---------eCCCe
Q psy307 514 VTSSPNNKWLACQSM-DN----KILIFSALNRFKLNRKKTFEGHMVA-GYACSLDFSPDMSYLISG---------DADGK 578 (1019)
Q Consensus 514 v~~spdg~~Lasgs~-Dg----~I~iwd~~~~~~~~~~~~l~gh~~~-~~V~~v~fspdg~~Lasg---------s~DG~ 578 (1019)
++|+|+|+.|+..+. ++ .|++||+.++.. ..+..+.++... .....+.|+|||+.|+.. ..++.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 899999998866543 22 399999987642 122233331100 001123799999988754 45668
Q ss_pred EEEEeCCCCceeeeeeccCC-----------CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 579 CYIWDWKTTKLFKKWKAHDG-----------VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 579 I~IWDl~t~~~l~~l~~h~~-----------~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|++||+.+++. ..+..|.. .+.+++|+|+|..+++++..+|...+|
T Consensus 322 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 322 LYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 99999998765 45555555 578899999996555555567766544
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=1.5e-14 Score=163.91 Aligned_cols=268 Identities=10% Similarity=0.036 Sum_probs=171.4
Q ss_pred CCCCCCCeeeeCCCC----CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 293 PTDYQGRSFLHPPHD----VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D----~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
.++++|+.++.+..+ +.+.+|....... ..+.+.....+...+..+++ ++..++++...++.|.+|++...
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~ 130 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD 130 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTT---EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC
Confidence 357889988877765 7899997654211 11344555556667888888 43444444447899999999544
Q ss_pred cEEE---E--Eecc--------cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe------E-
Q psy307 369 RRCV---R--TYYG--------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR------C- 428 (1019)
Q Consensus 369 ~~~~---~--~~~g--------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~------~- 428 (1019)
+... . ...+ +...+.+++|+|+|. .+++++..++.|.+|++..... .
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK-------------YLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS-------------EEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCC-------------EEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 3211 1 1111 122346677777773 3455555689999999864432 2
Q ss_pred -----EEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCcee
Q psy307 429 -----VRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 429 -----~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
......+...+.+++|+|+|+++++++ .++.|.+||+.++....... +...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~-------~~~~~--------------- 255 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT-------VAADT--------------- 255 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE-------EESCS---------------
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE-------EecCC---------------
Confidence 122334456678999999999888777 68999999998765422111 00001
Q ss_pred eeCCCCCcccEEEEcCCCCEEEEEecC--CeEEEEEccC-cccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCe
Q psy307 503 IADPTMHSMPAVTSSPNNKWLACQSMD--NKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGK 578 (1019)
Q Consensus 503 i~~~~~~~i~~v~~spdg~~Lasgs~D--g~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~ 578 (1019)
.+......++|+|+|++|+++..+ +.|.+|++.. ......+..+.. ...+.+++|+|||++|++++ .++.
T Consensus 256 ---~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 256 ---VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp ---SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred ---CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCC
Confidence 011234578999999998776654 8999999862 222223333333 24577899999999988887 6789
Q ss_pred EEEE--eCCCCceeeee-eccCCCEEEEEEc
Q psy307 579 CYIW--DWKTTKLFKKW-KAHDGVCISTLWH 606 (1019)
Q Consensus 579 I~IW--Dl~t~~~l~~l-~~h~~~V~sl~~s 606 (1019)
|.+| |..++++.... ..+...+.|+.|.
T Consensus 330 v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 330 IQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9996 55577765543 2344578888885
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=6.3e-15 Score=165.90 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=164.7
Q ss_pred CCCCCCeeeeCC--CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee-CCCeEEEEecCCCc-
Q psy307 294 TDYQGRSFLHPP--HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKER- 369 (1019)
Q Consensus 294 ~~~~gr~~~~~~--~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs-~Dg~I~IWdl~~~~- 369 (1019)
++++|+.++... .++.|.+|+..... .+.+..+..|...+..++|+|+ +.+|++++ .++.|.+|++...+
T Consensus 47 ~spdg~l~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 47 LSAKDCLYSVDKEDDEGGIAAWQIDGQT-----AHKLNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVMKIAADGA 120 (347)
T ss_dssp ECTTCEEEEEEEETTEEEEEEEEEETTE-----EEEEEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEEEECTTSC
T ss_pred EccCCeEEEEEecCCCceEEEEEecCCc-----EEEeeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEEEeCCCCC
Confidence 467888444442 26889999874321 1345566678889999999997 66666666 78999999995332
Q ss_pred -EEEEEeccc---------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEE--EEEccc-c
Q psy307 370 -RCVRTYYGH---------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCV--RTYYGH-R 436 (1019)
Q Consensus 370 -~~~~~~~gh---------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~l~~H-~ 436 (1019)
..+..+... ...+.+++|+|+| ++++++..++.|.+|++...+... ..+..+ .
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--------------~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--------------RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--------------CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCC--------------cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 223332211 1236667777776 466777778999999996444332 222222 3
Q ss_pred ccEeEEEEecCCCEEEEE-EcCCeEEEEECCC--CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 437 QAVRDICFNNTGTNFISA-GYDRYLKLWDTES--GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t--~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
..+..++|+|+|++++++ ..++.|.+|++.. ++...... +...|.+ ......+..
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~~---------------~~~~~~~~~ 244 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-------VKTIPAD---------------YTAHNGAAA 244 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-------EESSCTT---------------CCSCCEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-------eeecCCC---------------CCCCCccee
Confidence 367889999999976654 5678999999874 43211110 0001110 001134567
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-CeEEEE--eCCCCce
Q psy307 514 VTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-GKCYIW--DWKTTKL 589 (1019)
Q Consensus 514 v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-G~I~IW--Dl~t~~~ 589 (1019)
++|+|+|++| ++...++.|.+|++........+..+..+. ..+..++|+|||++|++++.+ +.|.+| |..++++
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 8999999987 455668999999987432333444454433 457789999999998888764 899999 5566765
Q ss_pred e
Q psy307 590 F 590 (1019)
Q Consensus 590 l 590 (1019)
.
T Consensus 323 ~ 323 (347)
T 3hfq_A 323 S 323 (347)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=1.4e-14 Score=165.05 Aligned_cols=251 Identities=12% Similarity=0.041 Sum_probs=162.2
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
+...+..++|+|+ +++|++++.+ .|.+|++...+++....... .+.+.+++|+|+|..+ ++++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l------------~~~~~~ 103 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI------------FLLAAK 103 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE------------EEEECS
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEE------------EEEEec
Confidence 4457889999996 7788888888 99999985244443322210 1235567788887310 244442
Q ss_pred -------------CCCcEEEEEccCCCeEEEEEc----cccccEeEEEEecCCCEEEEEEc-CCeEEEEECC-CCceEEE
Q psy307 413 -------------MDCRVKLWEVYKEHRCVRTYY----GHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTE-SGECISR 473 (1019)
Q Consensus 413 -------------~Dg~I~IWDl~~~~~~~~~l~----~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~-t~~~i~~ 473 (1019)
.+|.+.+|++...+.....+. .+...+.+++|+|+|++++++.. ++.|.+||+. +++....
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 689999999965555443333 25567999999999998887764 6899999998 6654221
Q ss_pred EecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec-CCeEEEEEccC--cccc---ccee
Q psy307 474 FTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM-DNKILIFSALN--RFKL---NRKK 547 (1019)
Q Consensus 474 ~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~-Dg~I~iwd~~~--~~~~---~~~~ 547 (1019)
.. +.. ..+...+..++|+|+|+++++++. ++.|.+|++.. +... ..+.
T Consensus 184 ~~-------~~~-------------------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 184 GS-------VDA-------------------PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EE-------EEC-------------------SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred ee-------Eec-------------------CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 10 000 001233567888999999887764 78999998753 3111 0111
Q ss_pred EEecc-cc-cc------ceEEEE-EcCCCCEEEEEeCCC------eEEEEeCC-CCceee---eeeccCCCEEEEEEcC-
Q psy307 548 TFEGH-MV-AG------YACSLD-FSPDMSYLISGDADG------KCYIWDWK-TTKLFK---KWKAHDGVCISTLWHP- 607 (1019)
Q Consensus 548 ~l~gh-~~-~~------~V~~v~-fspdg~~Lasgs~DG------~I~IWDl~-t~~~l~---~l~~h~~~V~sl~~sp- 607 (1019)
.+... .. .. .+..++ |+|||++|++++.++ .|.+|++. ++++.. .+..+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 11111 00 01 478899 999999988766432 89999996 666543 2333444567889999
Q ss_pred --CCCcEEEEEeCC-CcEEEE
Q psy307 608 --HEPSKVVTAGWD-AATAKV 625 (1019)
Q Consensus 608 --~~~~~l~s~s~D-g~I~iw 625 (1019)
++ .+|++++.+ ++|.+|
T Consensus 318 ~~dg-~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 318 PWSD-EWMAITDDQEGWLEIY 337 (365)
T ss_dssp TTCT-TEEEEECSSSCEEEEE
T ss_pred CcCC-CEEEEEEcCCCeEEEE
Confidence 67 577777764 777665
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=190.72 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=171.9
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCC---CeEEEEEcCCCCcEEEEeeC---------CCeE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTK---GISAIRWFPKSAHLLLSCSM---------DCRV 360 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~---~V~~i~fspd~g~lLaSgs~---------Dg~I 360 (1019)
.+.++|+.++.+ .|+.|.+|+.... +....+.+|.. .|.+++|||| |++|++++. |+.|
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETG-------QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSC-------CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEE
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCC-------cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEE
Confidence 466788655544 6899999987643 33444555543 4999999996 777777765 7999
Q ss_pred EEEecCCCcEEE--EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-Eccccc
Q psy307 361 KLWEVYKERRCV--RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-YYGHRQ 437 (1019)
Q Consensus 361 ~IWdl~~~~~~~--~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-l~~H~~ 437 (1019)
++||+.+ ++++ ..+ ...+.+++||||| +.|+.++ ++.|++||+..+. ..+. ..++..
T Consensus 93 ~~~d~~~-g~~~~~~~l---~~~~~~~~~SPDG--------------~~la~~~-~~~i~~~~~~~g~-~~~l~~~~~~~ 152 (719)
T 1z68_A 93 YIYDLSN-GEFVRGNEL---PRPIQYLCWSPVG--------------SKLAYVY-QNNIYLKQRPGDP-PFQITFNGREN 152 (719)
T ss_dssp EEEETTT-TEECCSSCC---CSSBCCEEECSST--------------TCEEEEE-TTEEEEESSTTSC-CEECCCCCBTT
T ss_pred EEEECCC-Cccccceec---CcccccceECCCC--------------CEEEEEE-CCeEEEEeCCCCC-cEEEecCCCcC
Confidence 9999944 4431 122 2568889999998 4566654 7899999995433 3332 233333
Q ss_pred cE-----------------eEEEEecCCCEEEEEEcCC----------------------------------eEEEEECC
Q psy307 438 AV-----------------RDICFNNTGTNFISAGYDR----------------------------------YLKLWDTE 466 (1019)
Q Consensus 438 ~V-----------------~sl~fspdg~~l~S~s~Dg----------------------------------~I~lWDl~ 466 (1019)
.| .+++|+|||++|++++.|. .|++||+.
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 22 4899999999999988762 34444444
Q ss_pred CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEE----cc
Q psy307 467 SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFS----AL 538 (1019)
Q Consensus 467 t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd----~~ 538 (1019)
+++....+.. ..+ .....+...+..++|+||++++++.... ..|.+|| +.
T Consensus 233 ~~~~~~~~~~------------------~~~----~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 233 YPAYVGPQEV------------------PVP----AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp CHHHHCCEEC------------------CCC----HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCccceeEc------------------cCC----ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 4332100000 000 0011244567789999998877775433 2488899 66
Q ss_pred Cccccccee-EEeccccccceE-----EEEEcCCCCEEEE--EeCCC--eEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 539 NRFKLNRKK-TFEGHMVAGYAC-----SLDFSPDMSYLIS--GDADG--KCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 539 ~~~~~~~~~-~l~gh~~~~~V~-----~v~fspdg~~Las--gs~DG--~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
++....... ...+|. +++. .+.|+|||+.++. +..+| .|++||+.+++ ...+..+...+..+.++ +
T Consensus 291 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d 366 (719)
T 1z68_A 291 TWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-T 366 (719)
T ss_dssp SEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-C
T ss_pred CCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-e
Confidence 653322221 012343 3444 6899999996544 44555 57778887776 45566666678887777 7
Q ss_pred CCcEEEEEeC----CCcEEEE
Q psy307 609 EPSKVVTAGW----DAATAKV 625 (1019)
Q Consensus 609 ~~~~l~s~s~----Dg~I~iw 625 (1019)
+..+++++.. ++.+.+|
T Consensus 367 ~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 367 QDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSEEEEEESCGGGCTTCBEEE
T ss_pred CCEEEEEEecCCCCCceEEEE
Confidence 7544444443 3666555
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=188.82 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=163.1
Q ss_pred EEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCc---cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---
Q psy307 340 AIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQ---AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--- 413 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~---~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--- 413 (1019)
+++|+|+ +.+++++ .|++|++||+ .++++...+.+|.. .|.+++||||| ++|++++.
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg--------------~~la~~~~~~~ 82 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDR--------------QFVYLESDYSK 82 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTS--------------SEEEEEEEEEE
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCC--------------CeEEEEecCce
Confidence 6799997 5655554 6999999999 44555666666544 48999999999 56666655
Q ss_pred ------CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec
Q psy307 414 ------DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP 487 (1019)
Q Consensus 414 ------Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p 487 (1019)
++.|++||+. +++.+.. ......+.+++|||||+.|++++ |+.|++||+.++++............ ++
T Consensus 83 ~~~~s~~~~i~~~d~~-~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v--~~- 156 (719)
T 1z68_A 83 LWRYSYTATYYIYDLS-NGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI--FN- 156 (719)
T ss_dssp CSSSCEEEEEEEEETT-TTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE--EE-
T ss_pred eEEeecceEEEEEECC-CCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe--Ec-
Confidence 7899999994 4443100 11135688899999999999885 78999999998876542211110000 00
Q ss_pred CCCeeeeccCCCceeee-CCCCCcccEEEEcCCCCEEEEEecCC----------------------------------eE
Q psy307 488 DEDKQHLDIPVDMKYIA-DPTMHSMPAVTSSPNNKWLACQSMDN----------------------------------KI 532 (1019)
Q Consensus 488 ~~~~~~~~~~~~~~~i~-~~~~~~i~~v~~spdg~~Lasgs~Dg----------------------------------~I 532 (1019)
+.+ ..+. ........+++|||||++|++++.|. .|
T Consensus 157 -------g~~---~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 157 -------GIP---DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp -------SSC---CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred -------ccc---cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 000 0000 00012235788999999998887652 78
Q ss_pred EEEEccCcccc--cce---eEEeccccccceEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCceeeee----ec
Q psy307 533 LIFSALNRFKL--NRK---KTFEGHMVAGYACSLDFSPDMSYLISGDAD----GKCYIWD----WKTTKLFKKW----KA 595 (1019)
Q Consensus 533 ~iwd~~~~~~~--~~~---~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----G~I~IWD----l~t~~~l~~l----~~ 595 (1019)
++||+.++... ..+ ..+.+|. ..+.+++|||||+++++.... ..|++|| +.+++....+ .+
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSD--YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSC--EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEECCCCCccceeEccCCccCCCCc--ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 89999876321 000 1122444 668999999999887775432 3589999 8888776666 46
Q ss_pred cCCCEE-----EEEEcCCCCcEEE-EEeCCCcEEE
Q psy307 596 HDGVCI-----STLWHPHEPSKVV-TAGWDAATAK 624 (1019)
Q Consensus 596 h~~~V~-----sl~~sp~~~~~l~-s~s~Dg~I~i 624 (1019)
|.+.+. .+.|+|+|..+++ +...+|...+
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 777666 8899999965444 4556665444
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.60 E-value=7.9e-13 Score=144.41 Aligned_cols=238 Identities=11% Similarity=0.195 Sum_probs=170.7
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec------ccCccEeEEEE-cCCCCceeEEEeecCCCC
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY------GHRQAVRDICF-NNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~------gh~~~V~~i~f-spdg~~~vs~i~~~p~~~ 405 (1019)
+|-..+.+++++++ +.++++.+.++.|.+||.. +..+..+. +|...+.++++ .+++
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-------------- 89 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-------------- 89 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTT--------------
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCC--------------
Confidence 55668999999996 6788888899999999974 34445443 23456777777 3555
Q ss_pred cEEEEEeC-CCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 406 HLLLSCSM-DCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 406 ~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.++++... ++.|.+||. .+..+..+. .+...+.+++++++|+.+++.+.++.|.+||.. ++.+..+...
T Consensus 90 ~l~v~~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~------ 160 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYNQ--YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS------ 160 (286)
T ss_dssp EEEEEECGGGCEEEEECT--TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT------
T ss_pred eEEEEcCCCCCEEEEECC--CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC------
Confidence 45555543 899999994 344455553 345678999999999988777778999999964 4444433211
Q ss_pred EEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE
Q psy307 484 KFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF 563 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f 563 (1019)
.....+..++++|+|+++++.+.++.|.+||.... .+..+..+.....+..+++
T Consensus 161 ----------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~g~~~~p~~i~~ 214 (286)
T 1q7f_A 161 ----------------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----YLRQIGGEGITNYPIGVGI 214 (286)
T ss_dssp ----------------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----EEEEESCTTTSCSEEEEEE
T ss_pred ----------------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----EEEEEccCCccCCCcEEEE
Confidence 11234567888999998888888999999997543 2334433221245889999
Q ss_pred cCCCCEEEEEeCCC-eEEEEeCCCCceeeeeeccCC--CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 564 SPDMSYLISGDADG-KCYIWDWKTTKLFKKWKAHDG--VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 564 spdg~~Lasgs~DG-~I~IWDl~t~~~l~~l~~h~~--~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+++|+++++...++ .|.+||. +++.+..+..+.. .+.+++++|++ .++++ +.|++|.+|
T Consensus 215 d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 215 NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIY 276 (286)
T ss_dssp CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEE
T ss_pred CCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEE
Confidence 99999888888886 9999995 5777777765543 47899999988 56666 678999777
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=3.6e-13 Score=150.96 Aligned_cols=250 Identities=9% Similarity=0.110 Sum_probs=177.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCC------------------------CeEEEEecCCCcEEEEEec-ccCccEeEEEEcCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMD------------------------CRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNT 390 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~D------------------------g~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspd 390 (1019)
+.|.+|+++|+ ++++++.+.+ +.|.+||.. +++.+..+. ++-.....++++++
T Consensus 24 ~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCCCccCCceEEEECCC
Confidence 57999999996 7888888777 479999984 344444443 45567888999988
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEE---------ccccccEeEEEEec-CCCEEEEEE-cCCe
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTY---------YGHRQAVRDICFNN-TGTNFISAG-YDRY 459 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l---------~~H~~~V~sl~fsp-dg~~l~S~s-~Dg~ 459 (1019)
| +++++.+.++.|++||.......+..+ .++......|+++| ++..+++.+ .++.
T Consensus 102 g--------------~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 102 G--------------NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp S--------------CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred C--------------CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 8 678888889999999984332244444 34555789999999 788777776 5899
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEcc
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSAL 538 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~ 538 (1019)
|++|| .++..+..+..... +. ............++++|+ +.++++...++.|++|+..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~---------~~-----------~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESS---------GS-----------SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEEEC-TTSCEEEEECEECC---------SS-----------SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEc-CCCCEEEEeccCCC---------CC-----------CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 56666655532110 00 000011123567889998 7778888889999999998
Q ss_pred CcccccceeEEeccccccceEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCceeeeee---ccCCCEEEEEEcCCC
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSP------DMSYLISGDADGKCYIWDWKTTKLFKKWK---AHDGVCISTLWHPHE 609 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fsp------dg~~Lasgs~DG~I~IWDl~t~~~l~~l~---~h~~~V~sl~~sp~~ 609 (1019)
++. .+..+........+..++|+| +|+..++...+.+|++||..+++.+..+. ++-..+.+++++|+|
T Consensus 227 ~G~---~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 227 TKE---FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TCC---EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CCc---EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 552 334554333335678899999 33333333345689999999999998874 566778999999998
Q ss_pred CcEEEEEeCCCcEEEEe
Q psy307 610 PSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iww 626 (1019)
.++++...+++|.+|.
T Consensus 304 -~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 304 -TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp -EEEEEESSSCCEEEEE
T ss_pred -CEEEEECCCCEEEEEe
Confidence 7889999999997763
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.58 E-value=3e-13 Score=153.95 Aligned_cols=269 Identities=11% Similarity=0.102 Sum_probs=176.2
Q ss_pred CCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEEecCCCcEEEEEe
Q psy307 306 HDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKERRCVRTY 375 (1019)
Q Consensus 306 ~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IWdl~~~~~~~~~~ 375 (1019)
.|+.|.+|+... .+.+.++..+..+ .++|+|+ +++|++++ .++.|.+||+. ..+.+..+
T Consensus 29 ~d~~v~v~D~~t-------~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTN-------GKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTT-------CCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEE
T ss_pred ccCeEEEEECCC-------CeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEE
Confidence 367888997542 2455677776655 8999996 67777765 36789999984 45556655
Q ss_pred ccc------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEE-EccccccEeEEEEec
Q psy307 376 YGH------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRT-YYGHRQAVRDICFNN 446 (1019)
Q Consensus 376 ~gh------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~-l~~H~~~V~sl~fsp 446 (1019)
... ......++++|+| ++|+++.. ++.|.+||+. ..+.+.. +.. .+ ...+.+.|
T Consensus 98 ~~~~~~~~~g~~p~~i~~spdg--------------~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~-~~-~~~v~~~p 160 (361)
T 2oiz_A 98 SLPPKRVQGLNYDGLFRQTTDG--------------KFIVLQNASPATSIGIVDVA-KGDYVEDVTAA-AG-CWSVIPQP 160 (361)
T ss_dssp EECTTBCCBCCCGGGEEECTTS--------------SEEEEEEESSSEEEEEEETT-TTEEEEEEGGG-TT-EEEEEECT
T ss_pred EcCccccccCCCcceEEECCCC--------------CEEEEECCCCCCeEEEEECC-CCcEEEEEecC-CC-cceeEEcC
Confidence 432 3456788999998 56766653 6899999994 5566665 432 22 22346777
Q ss_pred CC-CEEEEEEcCCeEEEEECCC-CceEEEEe------cCCceEEEEEecCCCe----------eeeccCCCceeeeC---
Q psy307 447 TG-TNFISAGYDRYLKLWDTES-GECISRFT------SRKVAYCVKFHPDEDK----------QHLDIPVDMKYIAD--- 505 (1019)
Q Consensus 447 dg-~~l~S~s~Dg~I~lWDl~t-~~~i~~~~------~~~~v~~v~~~p~~~~----------~~~~~~~~~~~i~~--- 505 (1019)
++ ..+++.+.||.+.+|++.. ++...... ....+..+.+.|++.. ..++.......+..
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 76 6788899999999999865 55542221 1111111111222221 11222111000000
Q ss_pred -C---------CCCcccEEEEcCCCCEEEEEec-----------CCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 506 -P---------TMHSMPAVTSSPNNKWLACQSM-----------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 506 -~---------~~~~i~~v~~spdg~~Lasgs~-----------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
. .......++++|+++.+++... .+.|.+||+.+. +.+..+..+ . +.+++|+
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~---~-p~~ia~s 313 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGR---D-ALSMTID 313 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECT---T-CCEEEEE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecC---C-eeEEEEC
Confidence 0 0011223789999888777643 358999999887 345666655 3 7789999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC--ceeeeeeccCCCEEEEEEcCCCC
Q psy307 565 PDMSYLISGDADGKCYIWDWKTT--KLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~--~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
|||++|++++. +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 314 pdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 314 QQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999998887 99999999999 99999876777789999999984
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=4.5e-14 Score=161.14 Aligned_cols=273 Identities=12% Similarity=0.006 Sum_probs=169.2
Q ss_pred ceeeeccCCC-----CeEEEEEcCCCCcEEEEeeCC--CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEe
Q psy307 327 QVHTWEGHTK-----GISAIRWFPKSAHLLLSCSMD--CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIR 399 (1019)
Q Consensus 327 ~i~~l~gH~~-----~V~~i~fspd~g~lLaSgs~D--g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~ 399 (1019)
.+..+..+.. .+.+++|+|++..++++...+ ..|.+||+. +++......++......+.|+|+|
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~spdg-------- 92 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQAVQLTEGKGDNTFGGFISTDE-------- 92 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TTEEEECCCSSCBCTTTCEECTTS--------
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECC-CCcEEEeecCCCCccccceECCCC--------
Confidence 3444544433 378899999744444444443 468888884 444433333333223347888888
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeE-------------------EEEecCCCEEEEE-----E
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRD-------------------ICFNNTGTNFISA-----G 455 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~s-------------------l~fspdg~~l~S~-----s 455 (1019)
+.|+.++.++.|++||+. ++........+...... +.|+|+++.++.+ .
T Consensus 93 ------~~l~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 165 (396)
T 3c5m_A 93 ------RAFFYVKNELNLMKVDLE-TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN 165 (396)
T ss_dssp ------SEEEEEETTTEEEEEETT-TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred ------CEEEEEEcCCcEEEEECC-CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence 678888888899999984 44444444444433222 3567777765544 3
Q ss_pred cCCeEEEEECCCCceEEEEecCCceEEEEEec-CCCeeeeccCC-------Cce----------eeeCCC-CCcccEEEE
Q psy307 456 YDRYLKLWDTESGECISRFTSRKVAYCVKFHP-DEDKQHLDIPV-------DMK----------YIADPT-MHSMPAVTS 516 (1019)
Q Consensus 456 ~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~-------~~~----------~i~~~~-~~~i~~v~~ 516 (1019)
.+..|.+||+.+++..........+..+.|+| ++..+++.... ... .+.... ...+..++|
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 56789999999998776666667788899999 66544332110 111 111110 123566899
Q ss_pred cCCCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEe----------------
Q psy307 517 SPNNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGD---------------- 574 (1019)
Q Consensus 517 spdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs---------------- 574 (1019)
+|+|++|+..+.+ +.|++||+.++... .+.... + .. +.|+| ||+++++++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~~--~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENE----EVMVMP--P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----EEEECC--S-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeE----EeeeCC--C-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 9999988877654 45999999765321 111111 1 22 88999 999888754
Q ss_pred CCCeEEEEeCCCCceeeeeeccCC-----------CEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 575 ADGKCYIWDWKTTKLFKKWKAHDG-----------VCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~h~~-----------~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.++.|++||+.+++. ..+..+.. .+..++|+|++..+++++..++...+
T Consensus 318 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp CCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred CCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 347899999988775 34554544 25678899998544444444565543
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.57 E-value=4e-14 Score=176.94 Aligned_cols=258 Identities=8% Similarity=0.040 Sum_probs=158.1
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCcc-----EeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQA-----VRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~-----V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
...+++|+|+ +.+++++ ||+|++||+. ++++...+.+|... ..++.||||| ++|+.+
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------~~l~~~ 79 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG--------------QFILLE 79 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS--------------SEEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC--------------CEEEEE
Confidence 4567999996 6888886 9999999994 45556667777643 2347889988 566666
Q ss_pred eCC---------CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCC--ce
Q psy307 412 SMD---------CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRK--VA 480 (1019)
Q Consensus 412 s~D---------g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~--~v 480 (1019)
+.+ +.+.+||+. ++++ ..+..|.+.+...+|||||+.|+.+ .|+.|.+||+.++...+...... .+
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~-~~~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLN-KRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETT-TTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ECCeeeEEEccceEEEEEECC-CCcE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 665 567799994 4443 3467788889999999999999888 57899999999887554222111 11
Q ss_pred -----------------EEEEEecCCCeeeeccC----CCceeee---CC--CCCcccEEEEcCCCCEEEEEecCCeEEE
Q psy307 481 -----------------YCVKFHPDEDKQHLDIP----VDMKYIA---DP--TMHSMPAVTSSPNNKWLACQSMDNKILI 534 (1019)
Q Consensus 481 -----------------~~v~~~p~~~~~~~~~~----~~~~~i~---~~--~~~~i~~v~~spdg~~Lasgs~Dg~I~i 534 (1019)
..+.|+||+..+++... .....+. .. ....+..+.+.+.|.. ....+|.+
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v 232 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFV 232 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEE
T ss_pred ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEE
Confidence 12555665554443110 0000000 00 1111222233333221 11126888
Q ss_pred EEccC---cccccceeEEe------ccccccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc----e--eeee--
Q psy307 535 FSALN---RFKLNRKKTFE------GHMVAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTTK----L--FKKW-- 593 (1019)
Q Consensus 535 wd~~~---~~~~~~~~~l~------gh~~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~~----~--l~~l-- 593 (1019)
||+.+ +.... ...+. ++. .++..++|||||++++.... +..|++||+.+++ + +..+
T Consensus 233 ~d~~~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 233 VNTDSLSSVTNAT-SIQITAPASMLIGD--HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp EETTSCCSSSCCC-EEEECCCHHHHTSC--EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred EECCCCCCCCcce-EEEecCCccCCCCC--eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 99887 52111 12222 233 67899999999997665533 3479999999887 2 2222
Q ss_pred eccCCCEE-----EEEEcCCCCcEEEEEe-CCCcE
Q psy307 594 KAHDGVCI-----STLWHPHEPSKVVTAG-WDAAT 622 (1019)
Q Consensus 594 ~~h~~~V~-----sl~~sp~~~~~l~s~s-~Dg~I 622 (1019)
..|.+.|. ...|+|+|..+++..+ .+|.-
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCce
Confidence 45665444 7889999954442554 45543
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=5.5e-12 Score=140.80 Aligned_cols=267 Identities=8% Similarity=0.016 Sum_probs=176.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.++..+..++....+..++.|. ...+..+.+|...+.+++|+|+ +.+++++..++.|.+||... ++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~-~~~~ 79 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTIT----------AEPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPET-KEIK 79 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEE----------CEEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTT-CCEE
T ss_pred eecCCccceeEEeecccCcccc----------cceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCC-CcEE
Confidence 3455555566666777788872 1345667778888999999996 67888888999999999843 3433
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC----CcEEEEEccCCCeEEEEEc--cccccEeEEEEec
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD----CRVKLWEVYKEHRCVRTYY--GHRQAVRDICFNN 446 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D----g~I~IWDl~~~~~~~~~l~--~H~~~V~sl~fsp 446 (1019)
.....+...+.+++++++| .+++++..+ +.|.+||.... .....+. .+...+.+++++|
T Consensus 80 ~~~~~~~~~~~~i~~~~dg--------------~l~v~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~ 144 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDG--------------RLFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCIDDMVFDS 144 (333)
T ss_dssp EEEECSSSSEEEEEECTTS--------------CEEEEECTTSSSCCEEEEECTTSC-SCEEEECSSSSCCCEEEEEECT
T ss_pred EEeeCCCCCcceEEECCCC--------------cEEEEeCCCCCCCceEEEEeCCCC-EEEEEEccCccCCcccceEECC
Confidence 3333566779999999888 566666666 68999998433 3322232 3456789999999
Q ss_pred CCCEEEEEEc------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 447 TGTNFISAGY------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 447 dg~~l~S~s~------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
+|+.+++... .+.|..||..+++....... ...+..++++|+|
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~~i~~~~dg 193 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------------------------------ISVANGIALSTDE 193 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------------------------------ESSEEEEEECTTS
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-------------------------------CCcccceEECCCC
Confidence 9987776653 24566666655443221110 0124567888998
Q ss_pred CEEE-EEecCCeEEEEEccC-cccccce--eEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 521 KWLA-CQSMDNKILIFSALN-RFKLNRK--KTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 521 ~~La-sgs~Dg~I~iwd~~~-~~~~~~~--~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
+.|+ +.+.++.|.+|++.. +...... ...........+..++++++|+++++...++.|.+||. +++.+..+..+
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 8654 445678999999863 2211111 01110011135778999999998888888899999998 57777777654
Q ss_pred CC------CEEEEEEcCCCCcEEEEEeCC
Q psy307 597 DG------VCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 597 ~~------~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.. .+.+++|+|++. .|+.++.+
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~-~L~v~~~~ 300 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTN-QLIICSND 300 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSC-EEEEEEEC
T ss_pred CCccccccCcceEEECCCCC-EEEEEeCc
Confidence 33 588999999874 45444444
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.53 E-value=6.3e-13 Score=151.22 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=158.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee--ccCCCCeEEEEEcCCCCc--EEEEee-------------C
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW--EGHTKGISAIRWFPKSAH--LLLSCS-------------M 356 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l--~gH~~~V~~i~fspd~g~--lLaSgs-------------~ 356 (1019)
++++|+.++++..+ .+.+|+.... .+..... ..+ +.+.+++|+|+ ++ ++++++ .
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~------g~~~~~~~~~~~-g~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSP------TEIVHEASHPIG-GHPRANDADTN-TRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEET------TEEEEEEEEECC-SSGGGGCTTSC-CEEEEEEECSSTTCCEEEEEESSS
T ss_pred ECCCCCEEEEEccc-eEEEEEECCC------CCEEEeeEeecC-CCCccEEECCC-CCEEEEEEecCCcceeccceeecC
Confidence 57789988877777 8999986411 1122211 111 23667899997 55 455653 6
Q ss_pred CCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeE--E
Q psy307 357 DCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRC--V 429 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~--~ 429 (1019)
+|.+.+|++...++....+. .+...+.+++|+|+| ++|+++. .++.|.+||+...++. +
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--------------~~l~~~~~~~~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--------------TYLYSADLTANKLWTHRKLASGEVELV 183 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--------------SEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--------------CEEEEEcCCCCEEEEEEECCCCCEEEe
Confidence 99999999964454443333 245678889999988 4566555 4689999999523333 2
Q ss_pred EEEc--cccccEeEEEEecCCCEEEEEEc-CCeEEEEECC--CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee
Q psy307 430 RTYY--GHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTE--SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 430 ~~l~--~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~--t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~ 504 (1019)
..+. .|...+..++|+|+|+++++++. +++|.+|++. +++...... .+...|.+.
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~------~~~~~~~~~-------------- 243 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH------SFPLIPPGI-------------- 243 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------EEESSCTTC--------------
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc------eEEcCCCCc--------------
Confidence 3333 24667999999999999888775 6899999765 455422110 000011100
Q ss_pred CCCC------CcccEEE-EcCCCCEEEEEecC-C-----eEEEEEccCccccccee-EEeccccccceEEEEEcC---CC
Q psy307 505 DPTM------HSMPAVT-SSPNNKWLACQSMD-N-----KILIFSALNRFKLNRKK-TFEGHMVAGYACSLDFSP---DM 567 (1019)
Q Consensus 505 ~~~~------~~i~~v~-~spdg~~Lasgs~D-g-----~I~iwd~~~~~~~~~~~-~l~gh~~~~~V~~v~fsp---dg 567 (1019)
..+. ..+..++ |+|+|++|++++.+ + .|.+|++.....+.... ....+. ..+..++|+| ||
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCC
Confidence 0001 1356788 99999998876643 3 89999986322221111 122222 2345689999 89
Q ss_pred CEEEEEeCC-CeEEEEeCCCC
Q psy307 568 SYLISGDAD-GKCYIWDWKTT 587 (1019)
Q Consensus 568 ~~Lasgs~D-G~I~IWDl~t~ 587 (1019)
++|++++.+ +.|.||++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998865 89999998765
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.53 E-value=3.1e-13 Score=166.19 Aligned_cols=271 Identities=8% Similarity=-0.042 Sum_probs=176.8
Q ss_pred eeeeccCCCCeEEEEEcCCCCcEEEEe--eCCCeEEEEecCCCcEEEEEecccCccEe---------EEEEc--CCCCce
Q psy307 328 VHTWEGHTKGISAIRWFPKSAHLLLSC--SMDCRVKLWEVYKERRCVRTYYGHRQAVR---------DICFN--NTGTNF 394 (1019)
Q Consensus 328 i~~l~gH~~~V~~i~fspd~g~lLaSg--s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~---------~i~fs--pdg~~~ 394 (1019)
...+.+|...|..++|+++ ..+++++ +.++...||....++ ..+.+..|...+. ...|+ |||.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCC--
Confidence 3467889999999999985 5556666 568899999973333 3556666766665 45454 6663
Q ss_pred eEEEeecCCCCc-EEEEEeCCCcEEEEEccCCC-eEEEEEcc-----ccccEeEEEEecCCCEEEEEEcC----------
Q psy307 395 ISAIRWFPKSAH-LLLSCSMDCRVKLWEVYKEH-RCVRTYYG-----HRQAVRDICFNNTGTNFISAGYD---------- 457 (1019)
Q Consensus 395 vs~i~~~p~~~~-~L~sgs~Dg~I~IWDl~~~~-~~~~~l~~-----H~~~V~sl~fspdg~~l~S~s~D---------- 457 (1019)
. ++++...+..|.+|++...+ .....+.. |...+.+++|+|||+.|++++.|
T Consensus 92 -----------~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 92 -----------PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp -----------CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred -----------eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 3 33333335666666663001 23444555 67789999999999999999887
Q ss_pred CeEEEEECCC------CceEEEE-ecCCceEEEEEecCCCeeeeccCC-----------------------CceeeeCCC
Q psy307 458 RYLKLWDTES------GECISRF-TSRKVAYCVKFHPDEDKQHLDIPV-----------------------DMKYIADPT 507 (1019)
Q Consensus 458 g~I~lWDl~t------~~~i~~~-~~~~~v~~v~~~p~~~~~~~~~~~-----------------------~~~~i~~~~ 507 (1019)
..|.+||+.+ +...... .....+..++|+||+..+++.... ....+...+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5899999998 6654444 344567788999999877652210 011122222
Q ss_pred CCcccEEEEcCCCCEEEEEecCC--eEEEEEccCcccccceeEEecccccc------ceEEEEEcCCCCEEEEEeCCCeE
Q psy307 508 MHSMPAVTSSPNNKWLACQSMDN--KILIFSALNRFKLNRKKTFEGHMVAG------YACSLDFSPDMSYLISGDADGKC 579 (1019)
Q Consensus 508 ~~~i~~v~~spdg~~Lasgs~Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~------~V~~v~fspdg~~Lasgs~DG~I 579 (1019)
...+..+.|+|||+++++++.++ .|.+||+.++.. .....++.... .+..++|+|+++++++++. |.+
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA---TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA 316 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE---EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce---eecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence 45677899999999888888888 666666644421 11112221100 1456889999999999998 999
Q ss_pred EEE--eCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 580 YIW--DWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 580 ~IW--Dl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
+|| |+.+++ +..+..|.+.+..+ |++++..++++++..
T Consensus 317 ~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~ 356 (662)
T 3azo_A 317 VLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASP 356 (662)
T ss_dssp EEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEET
T ss_pred EEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCC
Confidence 999 655555 67777787777766 244444455444433
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=1.1e-12 Score=163.79 Aligned_cols=294 Identities=11% Similarity=0.012 Sum_probs=181.8
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCC-----eEEEEEcCCCCcEEEEeeCC---------C
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKG-----ISAIRWFPKSAHLLLSCSMD---------C 358 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~-----V~~i~fspd~g~lLaSgs~D---------g 358 (1019)
.+.++|+.++++ |+.|.+|+.... ++...+.+|... ...++|||| |+.|+.++.+ +
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYG-------NSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTC-------CEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEE
T ss_pred EECCCCcEEEEc--CCcEEEEECCCC-------ceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccce
Confidence 467788888776 899999987643 334556777643 244788997 7778887776 6
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
.+.+||+.+ +++ ..+..|...+...+||||| +.|+.+ .++.|++|++..+.....+..++...
T Consensus 93 ~~~~~d~~~-~~~-~~l~~~~~~~~~~~~SPdG--------------~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 93 SYDIYDLNK-RQL-ITEERIPNNTQWVTWSPVG--------------HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EEEEEETTT-TEE-CCSSCCCTTEEEEEECSST--------------TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred EEEEEECCC-CcE-EEcccCCCcceeeEECCCC--------------CEEEEE-ECCeEEEEECCCCceEEEcCCCCccc
Confidence 677999944 443 4567788889999999999 455555 46899999985443222223333332
Q ss_pred E-----------------eEEEEecCCCEEEEEEcCC------------------------------------eEEEEEC
Q psy307 439 V-----------------RDICFNNTGTNFISAGYDR------------------------------------YLKLWDT 465 (1019)
Q Consensus 439 V-----------------~sl~fspdg~~l~S~s~Dg------------------------------------~I~lWDl 465 (1019)
+ .++.|||||++|+.++.|. +|.+||+
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~ 235 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT 235 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET
T ss_pred eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC
Confidence 2 3489999999999886432 5888999
Q ss_pred CC---Cc--eEEEEe-------cCCceEEEEEecCCCeeeeccC--------------CCc---------eeeeCCCCCc
Q psy307 466 ES---GE--CISRFT-------SRKVAYCVKFHPDEDKQHLDIP--------------VDM---------KYIADPTMHS 510 (1019)
Q Consensus 466 ~t---~~--~i~~~~-------~~~~v~~v~~~p~~~~~~~~~~--------------~~~---------~~i~~~~~~~ 510 (1019)
.+ ++ ....+. ....+..++|+|++...+.... ... ..+...+...
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~ 315 (740)
T 4a5s_A 236 DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW 315 (740)
T ss_dssp TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred CCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence 98 73 223333 3345788999999874333110 000 0111222333
Q ss_pred c-----cEEEEcCCCCEEE-EEec-CC--eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----
Q psy307 511 M-----PAVTSSPNNKWLA-CQSM-DN--KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD----- 576 (1019)
Q Consensus 511 i-----~~v~~spdg~~La-sgs~-Dg--~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----- 576 (1019)
+ ....|+|||+.|+ ..+. +| .|++||+.++.. ..+.... ..+..+. .+|++.|+..+..
T Consensus 316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITKGT--WEVIGIE-ALTSDYLYYISNEYKGMP 388 (740)
T ss_dssp SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCCSS--SCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----EecccCC--EEEEEEE-EEeCCEEEEEEecCCCCC
Confidence 3 3688999999887 6653 33 688888876522 2222221 2344443 2446655544332
Q ss_pred C--eEEEEeCCCCceeeeeec----cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 577 G--KCYIWDWKTTKLFKKWKA----HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 577 G--~I~IWDl~t~~~l~~l~~----h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+ .|+..++..+.....+.. ....+..+.|+|++..++++.+..+
T Consensus 389 ~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~ 438 (740)
T 4a5s_A 389 GGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG 438 (740)
T ss_dssp TCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS
T ss_pred ceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC
Confidence 2 455556655544333432 2356789999999965566655433
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.51 E-value=7e-12 Score=136.81 Aligned_cols=235 Identities=13% Similarity=0.207 Sum_probs=165.2
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeee------ccCCCCeEEEEEcCCCCcEEEEeeC-CCeEEEEecC
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTW------EGHTKGISAIRWFPKSAHLLLSCSM-DCRVKLWEVY 366 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l------~gH~~~V~~i~fspd~g~lLaSgs~-Dg~I~IWdl~ 366 (1019)
.+++|+.+++...++.|.+|+.... .+..+ .+|...+.++++.+.++.++++... ++.|.+||.
T Consensus 37 ~~~~g~l~v~~~~~~~i~~~d~~g~--------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 37 VNAQNDIIVADTNNHRIQIFDKEGR--------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTSC--------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred ECCCCCEEEEECCCCEEEEECCCCc--------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 4567888888888899999975522 22333 2456689999995435777766643 899999995
Q ss_pred CCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc--cccccEeEEE
Q psy307 367 KERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY--GHRQAVRDIC 443 (1019)
Q Consensus 367 ~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~--~H~~~V~sl~ 443 (1019)
. ++.+..+. .+...+.+++++++| .++++...++.|.+||. .+..+..+. ++...+.+|+
T Consensus 108 ~-g~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~~~--~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 108 Y-GQFVRKFGATILQHPRGVTVDNKG--------------RIIVVECKVMRVIIFDQ--NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp T-SCEEEEECTTTCSCEEEEEECTTS--------------CEEEEETTTTEEEEECT--TSCEEEEEECTTTCSSEEEEE
T ss_pred C-CcEEEEecCccCCCceEEEEeCCC--------------CEEEEECCCCEEEEEcC--CCCEEEEeCCCCccCCcEEEE
Confidence 3 34455553 344568888888887 57777778899999996 334444443 4556789999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE
Q psy307 444 FNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL 523 (1019)
Q Consensus 444 fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L 523 (1019)
++++|+.+++.+.++.|++||.. ++.+..+.... ....+..++++++|+++
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g----------------------------~~~~p~~i~~d~~G~l~ 221 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG----------------------------ITNYPIGVGINSNGEIL 221 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT----------------------------TSCSEEEEEECTTCCEE
T ss_pred ECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC----------------------------ccCCCcEEEECCCCCEE
Confidence 99999877777789999999974 44444432210 11335578889999888
Q ss_pred EEEecCC-eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 524 ACQSMDN-KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 524 asgs~Dg-~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
++...++ .|.+|+.... .+..+..+.....+.+++++|+|+++++ +.|++|++|++....
T Consensus 222 v~~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQDGQ----LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEECSSSCEEEEECTTSC----EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EEeCCCCEEEEEECCCCC----EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 8888776 9999996542 2344444432345778999999987777 679999999986543
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=4.1e-12 Score=144.55 Aligned_cols=256 Identities=9% Similarity=0.031 Sum_probs=168.8
Q ss_pred CCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCC
Q psy307 356 MDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKE 425 (1019)
Q Consensus 356 ~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~ 425 (1019)
.|+.|.+||. ..++.+..+..+..+ .++|+||| +++++++ .++.|.+||+ ..
T Consensus 29 ~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg--------------~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t 90 (361)
T 2oiz_A 29 TESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDG--------------KKIYTMTTYHERITRGKRSDVVEVWDA-DK 90 (361)
T ss_dssp GGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTS--------------SEEEEEEEEETTSSSSCEEEEEEEEET-TT
T ss_pred ccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCC--------------CEEEEEEecccccccCCCCCEEEEEEC-cC
Confidence 4789999998 445666777766655 89999999 4666654 3678999998 45
Q ss_pred CeEEEEEcc------ccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEE-EecCCc----------eEEEEEe
Q psy307 426 HRCVRTYYG------HRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISR-FTSRKV----------AYCVKFH 486 (1019)
Q Consensus 426 ~~~~~~l~~------H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~-~~~~~~----------v~~v~~~ 486 (1019)
.+.+..+.. +......++++|+|++++++.. +++|.+||+.+++.+.. +..... ..-+.++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 555555543 2345677899999999998875 58999999999998887 554322 1234555
Q ss_pred cCCCeeeeccCCCceee--------eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc-----
Q psy307 487 PDEDKQHLDIPVDMKYI--------ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM----- 553 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i--------~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~----- 553 (1019)
+++....+......+.. ....... ..+..++++..++..+.++.|.++|+..... .....+.-..
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccc
Confidence 66655444332211111 1111111 1233467777777888899999999865321 1111111000
Q ss_pred c---ccceEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 554 V---AGYACSLDFSPDMSYLISGDA-----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 554 ~---~~~V~~v~fspdg~~Lasgs~-----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
. ......++|+||++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|++. ++++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-LMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-EEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-EEEEeCC-
Confidence 0 000112689999888776543 3589999999999999999877 89999999995 7777776
Q ss_pred CcEEEEecccee--eeeee
Q psy307 620 AATAKVQDANIV--KIAVE 636 (1019)
Q Consensus 620 g~I~iwwd~~i~--ki~~e 636 (1019)
++|.+| |.... +....
T Consensus 325 ~~v~v~-D~~t~~l~~~~~ 342 (361)
T 2oiz_A 325 GNVNVY-DISQPEPKLLRT 342 (361)
T ss_dssp SCEEEE-ECSSSSCEEEEE
T ss_pred CeEEEE-ECCCCcceeeEE
Confidence 888665 66555 54433
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=8.8e-12 Score=136.99 Aligned_cols=240 Identities=11% Similarity=0.070 Sum_probs=165.2
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
..+..+..+.....+++|+|++..+++++..++.|.+|+.... ...+..+...+.+++++++|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg-------------- 80 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQG-------------- 80 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTC--------------
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCC--------------
Confidence 3445666677788999999975458999999999999998543 55666677889999999988
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccc----cccEeEEEEecCCCEEEEEEc-----------------CCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGH----RQAVRDICFNNTGTNFISAGY-----------------DRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s~-----------------Dg~I~lWD 464 (1019)
.++++...++.|.+||... ++........ ...+.+++++|+|+.+++.+. .+.|..+|
T Consensus 81 ~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPG-GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CEEEEETTTTEEEEECSTT-CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred cEEEEecCCCeEEEEcCCC-CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 5666666778999999843 3333322221 235678999999998887431 23444444
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccc-
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKL- 543 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~- 543 (1019)
.. ++...... .......++++|+|+.+++.+.++.|.+|++.....+
T Consensus 160 ~~-g~~~~~~~-------------------------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~ 207 (296)
T 3e5z_A 160 PD-GTLSAPIR-------------------------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE 207 (296)
T ss_dssp TT-SCEEEEEC-------------------------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE
T ss_pred CC-CCEEEeec-------------------------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc
Confidence 43 33211111 1123456888999998877778899999998622222
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEE-cCCCCcEEEEEeCCCcE
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLW-HPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~-sp~~~~~l~s~s~Dg~I 622 (1019)
.....+.. ..+.+.+++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++| .|++ ..|+.++.++..
T Consensus 208 ~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~~l~ 280 (296)
T 3e5z_A 208 YQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEG-RTLYMTVSTEFW 280 (296)
T ss_dssp EEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTS-CEEEEEETTEEE
T ss_pred CCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCC-CEEEEEcCCeEE
Confidence 11223322 22456789999999977666 7889999986 888888888777 899999 5776 467777766533
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.48 E-value=2.6e-12 Score=146.47 Aligned_cols=278 Identities=12% Similarity=0.037 Sum_probs=168.3
Q ss_pred CCCCCCCCeeeeCCC-CCceeee--cCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC
Q psy307 292 DPTDYQGRSFLHPPH-DVGTNLR--SDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 368 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~-D~~v~lw--~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~ 368 (1019)
..++++|+.++.... ++...|| +... .+......+|...+.+++|+|+ +..|+.++.++.|.+||+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------g~~~~lt~~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~- 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-------QVATQLTEGRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLAT- 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-------CEEEECCCSSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTT-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-------CceEEeeeCCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCC-
Confidence 568999999888776 6654444 4432 2334445666666667889996 78888888999999999954
Q ss_pred cEEEEEecccCccEeEEE--EcCCCCceeEEEe----ecCCCCcE----EEEEeCCCcEEEEEccCCCeEEEEEcccccc
Q psy307 369 RRCVRTYYGHRQAVRDIC--FNNTGTNFISAIR----WFPKSAHL----LLSCSMDCRVKLWEVYKEHRCVRTYYGHRQA 438 (1019)
Q Consensus 369 ~~~~~~~~gh~~~V~~i~--fspdg~~~vs~i~----~~p~~~~~----L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~ 438 (1019)
++....+..+...+.... +++++..++.... |.|..... ++....++.|.+||+..+ . ...+..+...
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~ 189 (388)
T 3pe7_A 112 LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQW 189 (388)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSC
T ss_pred CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCcc
Confidence 444444555555554443 3777753221100 00000000 001234578999998543 3 3444566778
Q ss_pred EeEEEEec-CCCEEEEEEcC------CeEEEEECCCCceEEEEecC--CceEEEEEecCCCeeeeccC---CC--ceeee
Q psy307 439 VRDICFNN-TGTNFISAGYD------RYLKLWDTESGECISRFTSR--KVAYCVKFHPDEDKQHLDIP---VD--MKYIA 504 (1019)
Q Consensus 439 V~sl~fsp-dg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~--~~v~~v~~~p~~~~~~~~~~---~~--~~~i~ 504 (1019)
+..++|+| +|+.|+.++.+ ..|.++|+.++......... ..+....|+|++..+++... .. ..++.
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 89999999 99998887764 37888888766544333333 24677899999986644111 00 12222
Q ss_pred CCCCCc----------------ccEEEEcCCCCEEEEE---------ecCCeEEEEEccCcccccceeEEeccccc----
Q psy307 505 DPTMHS----------------MPAVTSSPNNKWLACQ---------SMDNKILIFSALNRFKLNRKKTFEGHMVA---- 555 (1019)
Q Consensus 505 ~~~~~~----------------i~~v~~spdg~~Lasg---------s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~---- 555 (1019)
+..... ...+.|+|+|+.|+.. ..+..|++||+.++. ...+..+...
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVF 345 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCB
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCccccc
Confidence 222211 2223689999988864 446699999998753 2334333310
Q ss_pred -----cceEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy307 556 -----GYACSLDFSPDMSYLISGD-ADGKCYIWDW 584 (1019)
Q Consensus 556 -----~~V~~v~fspdg~~Lasgs-~DG~I~IWDl 584 (1019)
..+.+++|+|||++|+.++ .+|...||.+
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 0366789999999887665 4666666643
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=4.8e-12 Score=141.76 Aligned_cols=240 Identities=8% Similarity=0.054 Sum_probs=166.3
Q ss_pred CCCCCCCeeeeCCCCC------------------------ceeeecCCCCCCccCCccceeeec-cCCCCeEEEEEcCCC
Q psy307 293 PTDYQGRSFLHPPHDV------------------------GTNLRSDTPPDRCFLPKTQVHTWE-GHTKGISAIRWFPKS 347 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~------------------------~v~lw~~~~~~~~~lp~~~i~~l~-gH~~~V~~i~fspd~ 347 (1019)
+.+++|+.+++...+. .|.+|+... .+.+..+. ++-..+..++++|+
T Consensus 30 a~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 30 ALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------AEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp EECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------CCEEEEECTTTCSSEEEEEECTT-
T ss_pred EECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------CeEEeccCCCccCCceEEEECCC-
Confidence 3567788888776663 566665432 22233333 45568999999996
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEe---------cccCccEeEEEEcC-CCCceeEEEeecCCCCcEEEEEe-CCCc
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTY---------YGHRQAVRDICFNN-TGTNFISAIRWFPKSAHLLLSCS-MDCR 416 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~---------~gh~~~V~~i~fsp-dg~~~vs~i~~~p~~~~~L~sgs-~Dg~ 416 (1019)
+.++++.+.++.|++||.......+..+ .++-.....|+++| ++ .++++.+ .++.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--------------~lyv~d~~~~~~ 167 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--------------AVFVSDGYCNSR 167 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--------------CEEEEECSSCCE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC--------------eEEEEeCCCCCe
Confidence 6788888899999999984432244444 23444677788887 55 6777776 6999
Q ss_pred EEEEEccCCCeEEEEEcc----------ccccEeEEEEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecC---CceEE
Q psy307 417 VKLWEVYKEHRCVRTYYG----------HRQAVRDICFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSR---KVAYC 482 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~----------H~~~V~sl~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~---~~v~~ 482 (1019)
|++|+. .+..+..+.. +-.....|+++|+ +..+++...++.|++||..+|+.+..+... ..+..
T Consensus 168 I~~~~~--~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFSP--SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEECT--TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEcC--CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 999994 4555555532 3344899999998 666777778899999999989988877532 34555
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE---eccccccceE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF---EGHMVAGYAC 559 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l---~gh~~~~~V~ 559 (1019)
++++| + +.+..+|+.+++.+.++.|.+|+..++.. +..+ .++. ..+.
T Consensus 246 ~~~~p-g------------------------~~~~~~g~~~v~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~--~~p~ 295 (329)
T 3fvz_A 246 ISYIP-G------------------------FLFAVNGKPYFGDQEPVQGFVMNFSSGEI---IDVFKPVRKHF--DMPH 295 (329)
T ss_dssp EEEET-T------------------------EEEEEECCCCTTCSCCCCEEEEETTTCCE---EEEECCSSSCC--SSEE
T ss_pred eeecC-C------------------------EEEEeCCCEEeccCCCcEEEEEEcCCCeE---EEEEcCCCCcc--CCee
Confidence 55554 1 12222455555555677999999887633 3444 2333 5588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy307 560 SLDFSPDMSYLISGDADGKCYIWDWKT 586 (1019)
Q Consensus 560 ~v~fspdg~~Lasgs~DG~I~IWDl~t 586 (1019)
.++++|+|.++++...+++|++|++..
T Consensus 296 ~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 296 DIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 999999998888888899999999754
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=1.4e-11 Score=138.16 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCcEEEEe--------eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 337 GISAIRWFPKSAHLLLSC--------SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSg--------s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+..+++ ++..++++. +.++.|.+||+... +. +.+ ..+..++|+|||. .|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~-~~-~~l----~~~~~~~~SpDg~--------------~l 73 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN-AR-RFI----ENATMPRISPDGK--------------KI 73 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC-CE-EEE----ESCEEEEECTTSS--------------EE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC-ce-EEc----ccCCCeEECCCCC--------------EE
Confidence 5667777 444444432 23678999998543 32 223 4578889999884 45
Q ss_pred EEEeCC---Cc--EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC--------------------------
Q psy307 409 LSCSMD---CR--VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD-------------------------- 457 (1019)
Q Consensus 409 ~sgs~D---g~--I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D-------------------------- 457 (1019)
+.++.+ +. |.+||+ .++........+ . +.+++|+|+|+.|+.++.+
T Consensus 74 a~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 74 AFMRANEEKKVSEIWVADL-ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEETTTTEEEEEEEET-TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEeccCCCcceEEEEEC-CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 544433 33 777777 345544444333 3 9999999999998888743
Q ss_pred -CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC---------CceeeeCCCCCc-------ccEEEEcCCC
Q psy307 458 -RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV---------DMKYIADPTMHS-------MPAVTSSPNN 520 (1019)
Q Consensus 458 -g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~---------~~~~i~~~~~~~-------i~~v~~spdg 520 (1019)
..|.+||+.+++.+..+... .+..+.|+|++ ..+..... ...+..+ ... .....++|+|
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~spdg 226 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEKVSFYAVDSDG 226 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEEESEEEEEECS
T ss_pred cceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccCcceeeECCCC
Confidence 57999999998874444443 77889999998 43332110 0111111 111 1223349999
Q ss_pred CEEEEEecC--------CeEEEEEccCcccccceeEEeccccccceEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q psy307 521 KWLACQSMD--------NKILIFSALNRFKLNRKKTFEGHMVAGYACS-LDFSPDMSYLISGDADGKCYIWDWKTTKLFK 591 (1019)
Q Consensus 521 ~~Lasgs~D--------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~-v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~ 591 (1019)
++|+.++.+ ..|.+|| ++. ......++. ..+.. +.|+ || ++++++.+|.++|| +.+++..
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~--~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~- 295 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVD--RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK- 295 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCC--SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-
T ss_pred CEEEEEEccccCCccccceEEEEC--CCc---eEeccccCC--cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-
Confidence 999887754 3688888 331 112222332 45665 8999 98 99999999999999 8766653
Q ss_pred eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy307 592 KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQD 627 (1019)
Q Consensus 592 ~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd 627 (1019)
.+..+.+.|.+++|+| .++++++.++....+|.
T Consensus 296 ~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 296 PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEE
T ss_pred EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheE
Confidence 4444577899999999 37777777776533333
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.44 E-value=2.6e-12 Score=157.98 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=158.3
Q ss_pred CCCCe-eeeCCCCCceeeecCCCCCCccCCc-cceeeecc-----CCCCeEEEEEcCCCCcEEEEeeCC----------C
Q psy307 296 YQGRS-FLHPPHDVGTNLRSDTPPDRCFLPK-TQVHTWEG-----HTKGISAIRWFPKSAHLLLSCSMD----------C 358 (1019)
Q Consensus 296 ~~gr~-~~~~~~D~~v~lw~~~~~~~~~lp~-~~i~~l~g-----H~~~V~~i~fspd~g~lLaSgs~D----------g 358 (1019)
++|+. ++.... ....||...... +. .....+.. |...+.+++|+|| |+.|++++.| .
T Consensus 88 PDg~~~la~~~~-~~~~l~~~~~~~----~g~~~~~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHF-GDQRLYAFEPDA----PGGAVPRPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBT-TTCCEEEECTTS----TTCCCCEECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEEC-CCCeEEEEcCCC----CCCCCCEeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCcee
Confidence 67887 554433 234444433210 01 12334555 6778999999997 6777777766 6
Q ss_pred eEEEEecCCC-----cEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC--------CcEEEEEccC
Q psy307 359 RVKLWEVYKE-----RRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD--------CRVKLWEVYK 424 (1019)
Q Consensus 359 ~I~IWdl~~~-----~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D--------g~I~IWDl~~ 424 (1019)
.|.+||+... +. ...+. .+...+..++|+||| +.|+.++.+ ..|.+||+..
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--------------~~la~~~~~~~~~~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--------------RQAVWLAWDHPRMPWEGTELKTARVTE 226 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--------------SEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred EEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--------------CEEEEEECCCCCCCCCCcEEEEEEECC
Confidence 8999999541 33 34455 566788889999999 466655544 4799999963
Q ss_pred CC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 425 EH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 425 ~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
.+ .......+|...+..++|+|||+.+++++.|+ .|.+||+.+++.......+..+....|++
T Consensus 227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~------------ 294 (662)
T 3azo_A 227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP------------ 294 (662)
T ss_dssp TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST------------
T ss_pred CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc------------
Confidence 44 55555566788999999999999777777788 67777776666543222221111111111
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc--cCcccccceeEEeccccccceEEE-EEcCCCCEEEEEeCC
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA--LNRFKLNRKKTFEGHMVAGYACSL-DFSPDMSYLISGDAD 576 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~--~~~~~~~~~~~l~gh~~~~~V~~v-~fspdg~~Lasgs~D 576 (1019)
.+..++++|+++++++++. +.++||.+ .++ ....+..+. +.+..+ ++++++-++++++.+
T Consensus 295 ----------~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~----~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 295 ----------GMRWFAPLANGLIAVVHGK-GAAVLGILDPESG----ELVDAAGPW--TEWAATLTVSGTRAVGVAASPR 357 (662)
T ss_dssp ----------TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT----EEEECCSSC--CEEEEEEEEETTEEEEEEEETT
T ss_pred ----------cCceEeEeCCCEEEEEEEc-CccEEEEEECCCC----cEEEecCCC--CeEEEEEecCCCEEEEEEcCCC
Confidence 1346889999999999998 99999954 333 134555553 446655 444333344455555
Q ss_pred C--eEEEEeCCCCceeeeeeccCCC
Q psy307 577 G--KCYIWDWKTTKLFKKWKAHDGV 599 (1019)
Q Consensus 577 G--~I~IWDl~t~~~l~~l~~h~~~ 599 (1019)
. .|++||+.+++.......|...
T Consensus 358 ~~~~i~~~d~~~g~~~~l~~~~~~~ 382 (662)
T 3azo_A 358 TAYEVVELDTVTGRARTIGARHTDP 382 (662)
T ss_dssp EEEEEEEEETTTCCEEEEESCCCCS
T ss_pred CCCEEEEEECCCCceEEeecCCccc
Confidence 4 5666677777754433444433
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.44 E-value=1.7e-11 Score=152.21 Aligned_cols=244 Identities=7% Similarity=-0.019 Sum_probs=162.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeC-CC----eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSM-DC----RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~-Dg----~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+|...+.+++|||| |++|+.++. +| .|++||+.+ ++.......+ ..+..++|+||| +.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~~~-~~~~~~~wspDg--------------~~ 184 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER-VKFSCMAWTHDG--------------KG 184 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE-ECSCCEEECTTS--------------SE
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCC-CCCCcccccC-cccceEEEEeCC--------------CE
Confidence 45557899999997 556655443 33 899999954 4444432222 226778899988 45
Q ss_pred EEEEeCCCc----------------EEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEc-----CCeEEEE
Q psy307 408 LLSCSMDCR----------------VKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGY-----DRYLKLW 463 (1019)
Q Consensus 408 L~sgs~Dg~----------------I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-----Dg~I~lW 463 (1019)
|+.++.++. |++|++.+.. .++.....|...+.++.|+|||++|+.++. +..|.+|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEE
Confidence 666666554 9999995443 233333345667889999999999887775 5689999
Q ss_pred ECCC------Cc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeE
Q psy307 464 DTES------GE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKI 532 (1019)
Q Consensus 464 Dl~t------~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I 532 (1019)
|+.+ +. ....+..+. ..+. ..++|+|+.|+..+.. +.|
T Consensus 265 d~~~~~~~~~~~~~~~~l~~~~------------------------------~~~~-~~~s~dg~~l~~~s~~~~~~~~l 313 (710)
T 2xdw_A 265 DLQQESNGITGILKWVKLIDNF------------------------------EGEY-DYVTNEGTVFTFKTNRHSPNYRL 313 (710)
T ss_dssp EGGGSSSSSCSSCCCEEEECSS------------------------------SSCE-EEEEEETTEEEEEECTTCTTCEE
T ss_pred ECcccccccCCccceEEeeCCC------------------------------CcEE-EEEeccCCEEEEEECCCCCCCEE
Confidence 9876 32 122222111 1111 2467788877776653 369
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCe--EEEEeCCCCceeeeeeccCCCEEEEEEcCCCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGK--CYIWDWKTTKLFKKWKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~--I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~ 610 (1019)
.+||+.++.. .....+..+.....+..++|++++.+++++..||. |++||+.+++.+..+..+.+.+.++.++|++.
T Consensus 314 ~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 314 INIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp EEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 9999876531 12344555543235778999988888899988884 67778878888888888888899999999886
Q ss_pred cEEEEEeC---CCcEEEE
Q psy307 611 SKVVTAGW---DAATAKV 625 (1019)
Q Consensus 611 ~~l~s~s~---Dg~I~iw 625 (1019)
.++++.+. .++|..|
T Consensus 393 ~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 393 EIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp EEEEEEECSSCCCEEEEE
T ss_pred EEEEEEeCCCCCCEEEEE
Confidence 55555444 3456444
No 180
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=99.39 E-value=8.7e-14 Score=150.33 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=156.4
Q ss_pred cEEEEeccceeeeeeeccccCCceeecccccccchhhhhhhcccccCC-CceeEEEeecCCCceEEe-------------
Q psy307 621 ATAKVQDANIVKIAVEMEKQVPQLYQFNQTLTLSSIIQEICSGWSLSD-SEQYALQFSETNNKNYIT------------- 686 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~~~~v~ql~~l~~~~~LSs~~~~~~~~wsls~-~e~~al~~sd~~~~~~it------------- 686 (1019)
+|....|.+......-.....+.++.+++..++...+..+|..|..+. .+.|++++++++ .|++
T Consensus 19 ~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~--~Yl~~~~~l~~q~de~~ 96 (339)
T 3dad_A 19 RVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG--YYLDTELSLEEQREMLE 96 (339)
T ss_dssp EEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC--CBCCTTSCTTTTTTC--
T ss_pred EEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC--CeeccccchhhhHHHHH
Confidence 344445555544332234566889999999999999999999999996 899999999877 4999
Q ss_pred ---ccccccccCCceEEEEecCCccHHHHHhhcCCCch--------hhH------HHHHHhhhee-------eeeeeccc
Q psy307 687 ---EKNRNEIKNGSVLRLAFSASKTADDILSKLSDKNA--------SLE------EKTAAEFYCI-------CIVLLNKT 742 (1019)
Q Consensus 687 ---~~~~~~I~ng~Vl~LafSPd~~a~~Ilt~~~d~~i--------~lw------~~~~~e~~~~-------~i~~~~~~ 742 (1019)
++++..+++|.|++ .+|...+..|+.++.+++. +|. .+|++|||.. .+++ ..
T Consensus 97 ~~~e~~~~~~kn~~iLr--tsps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~--~~ 172 (339)
T 3dad_A 97 GFYEEISKGRKPTLILR--TQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA--AA 172 (339)
T ss_dssp CGGGTGGGTCCCEEEEE--ECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT--TS
T ss_pred HHHHhccccccCceEEe--cCcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH--hc
Confidence 88999999999988 9999999999999997764 222 1899999992 2332 22
Q ss_pred hhhhhh-chh-------------------hhH-HHHHHHHhhhhhhhhcC--chhhHHHHhcc--------cccc-----
Q psy307 743 WKEMRA-TTE-------------------DFV-KVFSVVREQITRALSSQ--PASLDKFRANI--------SRLT----- 786 (1019)
Q Consensus 743 ~~~~~a-~l~-------------------~fv-kv~s~v~~~~~~~~~~~--~~~L~~~~~~~--------~~~~----- 786 (1019)
.+++++ +|+ .|| +++++|+. ..+++++ ...|..||..+ ++++
T Consensus 173 ~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~ 250 (339)
T 3dad_A 173 DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVAST 250 (339)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhc
Confidence 556555 554 688 88888885 3455555 23444777776 3445
Q ss_pred -----HHHHHHHhhccccchhhhhcccccHHHHHhhc--------hHHHHHHHHHHhhcceec
Q psy307 787 -----YSEITNLWQQERTSREEWESHAKPIVELKELI--------TPEIVDLIQQQRLGYLVE 836 (1019)
Q Consensus 787 -----~~~l~~~l~~~~~~~~~~~~~~~~~~lln~l~--------~~ei~~~i~~~~l~~li~ 836 (1019)
++.|+.+|+..-.++.++|.| +|+|||+++ +.+|.+.+.+++++..|.
T Consensus 251 ~~~~p~~~Lv~~L~~~~~~D~elq~~--amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~ 311 (339)
T 3dad_A 251 TGAPPWANLVSILEEKNGADPELLVY--TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQ 311 (339)
T ss_dssp HCCCTTHHHHHHHTTTTSCCHHHHHH--HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCcHHHHHHHHhccCCCCHHHHHH--HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHH
Confidence 999999999333389999999 999999999 347888899999887654
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=8.2e-11 Score=126.78 Aligned_cols=235 Identities=7% Similarity=-0.023 Sum_probs=158.2
Q ss_pred CeEEEEEcCCCCcEEE-EeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFPKSAHLLL-SCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLa-Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
...+++++++ +.+++ +.+.++.|.+|+.... ........+...+.+++++++| .++++.. ++
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g--------------~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAG--------------TVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTC--------------CEEEEET-TT
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCC--------------CEEEEcC-CC
Confidence 6788999996 66776 5578899999987332 2211112333457778888777 4555555 88
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.|.+||... .............+.+++++++|+.+++...++.|.+||..+......
T Consensus 88 ~i~~~d~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~---------------------- 144 (270)
T 1rwi_B 88 RVVTLAAGS-NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---------------------- 144 (270)
T ss_dssp EEEEECTTC-SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC----------------------
T ss_pred EEEEEeCCC-ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee----------------------
Confidence 999999743 222222223336789999999998777777788999997654432110
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
.......+..++++++|+++++...++.|.+||....... .....+. ..+.+++++++|.++++...
T Consensus 145 --------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~---~~~~~~~--~~p~~i~~d~~g~l~v~~~~ 211 (270)
T 1rwi_B 145 --------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV---VLPFTDI--TAPWGIAVDEAGTVYVTEHN 211 (270)
T ss_dssp --------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE---ECCCSSC--CSEEEEEECTTCCEEEEETT
T ss_pred --------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE---eecccCC--CCceEEEECCCCCEEEEECC
Confidence 0011234567889999997777777899999998764321 1111111 45789999999988887777
Q ss_pred CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++.|.+||..+.........+-..+.++++++++ .++++...+++|.++
T Consensus 212 ~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 212 TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKL 260 (270)
T ss_dssp TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEE
T ss_pred CCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEE
Confidence 8899999987654433222333568999999998 588888889998765
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=5.5e-10 Score=123.00 Aligned_cols=243 Identities=12% Similarity=0.074 Sum_probs=158.1
Q ss_pred ccCCCCeEEEEEcCCCCcEEEE-------eeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCC-CCceeEEEe
Q psy307 332 EGHTKGISAIRWFPKSAHLLLS-------CSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNT-GTNFISAIR 399 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaS-------gs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspd-g~~~vs~i~ 399 (1019)
.+.-....+++|+++ +.++++ ++.++.|.+||.... +...... ++...+.+++++++ |
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g-------- 83 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDAN-------- 83 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSS--------
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCC--------
Confidence 334456789999985 677777 678899999997443 3222111 24466788888887 5
Q ss_pred ecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE-Ecc----ccccEeEEEEecCCCEEEEEEcC---------------Ce
Q psy307 400 WFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT-YYG----HRQAVRDICFNNTGTNFISAGYD---------------RY 459 (1019)
Q Consensus 400 ~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-l~~----H~~~V~sl~fspdg~~l~S~s~D---------------g~ 459 (1019)
.++ .++..+.|.+||.. ++.... ... +...+.+++++++|+.+++...+ +.
T Consensus 84 ------~l~-v~~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 84 ------QLF-VADMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp ------EEE-EEETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ------cEE-EEECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCe
Confidence 344 44445578899985 443332 211 12458899999999887776655 46
Q ss_pred EEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEc----CCCCEEEEE-ecCCeEEE
Q psy307 460 LKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSS----PNNKWLACQ-SMDNKILI 534 (1019)
Q Consensus 460 I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~s----pdg~~Lasg-s~Dg~I~i 534 (1019)
|..||.. ++........ .....++++ |+++.++++ +.++.|.+
T Consensus 155 l~~~~~~-g~~~~~~~~~-------------------------------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVDTAF-------------------------------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp EEEECTT-SCEEEEEEEE-------------------------------SSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred EEEECCC-CCEEEeccCC-------------------------------CCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 7777655 4432221110 123456777 888665544 56789999
Q ss_pred EEccCcccccceeEEeccc-cc-cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 535 FSALNRFKLNRKKTFEGHM-VA-GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 535 wd~~~~~~~~~~~~l~gh~-~~-~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
|+............+.... .. ..+..++++++|+++++...++.|.+||..+++.+..+..+...+.+++++|++..+
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEE
Confidence 9976211111111111111 11 346789999999988888788999999998888888787777789999999998435
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
+++...++.|.++
T Consensus 283 ~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 283 FVTEHENNAVWKF 295 (314)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCeEEEE
Confidence 6666667777665
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.35 E-value=4.7e-10 Score=125.56 Aligned_cols=235 Identities=9% Similarity=0.025 Sum_probs=160.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.....+++. ++.+.++...++.|.+||. .+.+.+.++. .......+++++++ .+.++...++
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g--------------~lyv~~~~~~ 105 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDE--------------KAYVTQIWDY 105 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETT--------------EEEEEEBSCS
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCC--------------eEEEEECCCC
Confidence 346777774 3667777777899999999 4456666664 34567788887776 4455555899
Q ss_pred cEEEEEccCCCeEEEEEcccc-----ccEeEEEEecCCCEEEEEE--cCCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 416 RVKLWEVYKEHRCVRTYYGHR-----QAVRDICFNNTGTNFISAG--YDRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~-----~~V~sl~fspdg~~l~S~s--~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
.|.+||+ .+.+....+.... .....+++ ++..++.+. .+++|.+||+.+++.+..+.....
T Consensus 106 ~v~~iD~-~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~--------- 173 (328)
T 3dsm_A 106 RIFIINP-KTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ--------- 173 (328)
T ss_dssp EEEEEET-TTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC---------
T ss_pred eEEEEEC-CCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC---------
Confidence 9999999 4555555554322 14556777 345555555 489999999999988776654322
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----------CeEEEEEccCcccccceeEEeccccccce
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----------NKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...++++|+|++++++..+ +.|.+||..+... ...+.-.. ...+
T Consensus 174 ----------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v---~~~~~~~~-g~~p 227 (328)
T 3dsm_A 174 ----------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV---EKQFKFKL-GDWP 227 (328)
T ss_dssp ----------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE---EEEEECCT-TCCC
T ss_pred ----------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE---EEEEecCC-CCCc
Confidence 2346677888876666554 7999999887632 23332211 1347
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--eeccCCCEEEEEEcCCCCcEEEEE----eCCCcEEEEeccc
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK--WKAHDGVCISTLWHPHEPSKVVTA----GWDAATAKVQDAN 629 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~--l~~h~~~V~sl~~sp~~~~~l~s~----s~Dg~I~iwwd~~ 629 (1019)
..++|+|++++|+++.. .|.+||..+++.... +..+.....+++++|+++.++++. ..+++|.+| +.+
T Consensus 228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~-d~~ 301 (328)
T 3dsm_A 228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY-SPQ 301 (328)
T ss_dssp EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE-CTT
T ss_pred eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE-CCC
Confidence 88999999999888765 899999998876432 222245689999999766677776 667787554 544
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=5.2e-10 Score=122.08 Aligned_cols=217 Identities=10% Similarity=0.077 Sum_probs=163.1
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH 426 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~ 426 (1019)
+++|++++.|+.|.+||. .+++.+..+..+. ..+.++.++|+| ++++ +.++.|..||. .+
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG--------------~ilv--s~~~~V~~~d~--~G 65 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAG--------------EILF--SYSKGAKMITR--DG 65 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTS--------------CEEE--ECBSEEEEECT--TS
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCC--------------CEEE--eCCCCEEEECC--CC
Confidence 589999999999999997 5667788887766 478899999998 5666 45778999997 46
Q ss_pred eEEEEEccc-cccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeee
Q psy307 427 RCVRTYYGH-RQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIA 504 (1019)
Q Consensus 427 ~~~~~l~~H-~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~ 504 (1019)
+.+..+..+ ...+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+......
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------------------------ 120 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------------------------ 120 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------------------------
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------------------------
Confidence 667777664 357889999999999999887 788888885 67776666432100
Q ss_pred CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 505 DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 505 ~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
.........+++.++|+++++.+.++.|..||.. +. .+..+... ..+.++.+.++|.++++++.+++|..+|.
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~---~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ---LLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC---EEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred CcccccccCceECCCCCEEEEecCCCEEEEECCC-CC---EEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 0001123456778999999999999999999987 53 33444433 23456788899999999998999999999
Q ss_pred CCCceeeeeeccC------CCEEEEEEcCCCCcEEEEE
Q psy307 585 KTTKLFKKWKAHD------GVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 585 ~t~~~l~~l~~h~------~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+|+.+.++..+. ..+.+++..++| .++++.
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~ 230 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICN 230 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEE
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCC-CEEEEe
Confidence 9999998886543 127788888887 455554
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.33 E-value=1.1e-10 Score=130.23 Aligned_cols=234 Identities=9% Similarity=0.024 Sum_probs=160.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..|.+++|+++ +..+++.+.++.++.|. ......+.++...+.+++|+++| .+++++..++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g--------------~l~~~~~~~~ 66 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQG--------------QLFLLDVFEG 66 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTS--------------CEEEEETTTC
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCC--------------CEEEEECCCC
Confidence 35777888885 55666668889999993 24566677777778899998888 5777888899
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.|.+||.. ++........+...+.+++++++|+.++++..+ +.|.+||..++.....+...
T Consensus 67 ~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------- 131 (333)
T 2dg1_A 67 NIFKINPE-TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-------------- 131 (333)
T ss_dssp EEEEECTT-TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--------------
T ss_pred EEEEEeCC-CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--------------
Confidence 99999984 444444444567789999999999877777666 68999998877654222110
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec------CCeEEEEEccCcccccceeEEeccccccceEEEEEcC
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp 565 (1019)
.....+..++++|+|+++++... .+.|..|+..++.. ..+.... ..+..++|+|
T Consensus 132 --------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--~~~~~i~~~~ 191 (333)
T 2dg1_A 132 --------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNI--SVANGIALST 191 (333)
T ss_dssp --------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----EEEEEEE--SSEEEEEECT
T ss_pred --------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE----EEeecCC--CcccceEECC
Confidence 01234567888888887776653 35666666554321 1222221 3477899999
Q ss_pred CCCEEE-EEeCCCeEEEEeCCC-Cceeee--------eeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 566 DMSYLI-SGDADGKCYIWDWKT-TKLFKK--------WKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 566 dg~~La-sgs~DG~I~IWDl~t-~~~l~~--------l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+|++|+ +.+.++.|++||+.+ +..+.. +.++ ..+.++++++++ .++++...++.|.+|
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVF 259 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEE
Confidence 998664 445678999999964 333321 1222 367889999998 566776677888765
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.33 E-value=5.6e-09 Score=113.65 Aligned_cols=266 Identities=7% Similarity=-0.019 Sum_probs=175.2
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
..+...+.++++.++ +.++++...++.|.+||.. ..........+...+.++++.++| .++++.
T Consensus 11 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~ 74 (299)
T 2z2n_A 11 TNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG--------------EVWFTE 74 (299)
T ss_dssp CSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS--------------CEEEEE
T ss_pred CCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC--------------CEEEeC
Confidence 345568999999996 6777766668999999985 322222223345678888888887 566666
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEecCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~p~~ 489 (1019)
..++.|..||.. .......+......+.+++++++|+.+++...++.|.+||. +++...... ....+..+++.+++
T Consensus 75 ~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 75 NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN 152 (299)
T ss_dssp TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence 668889999974 22222222334567899999999988877777889999998 555443221 23567888898887
Q ss_pred CeeeeccCCC----------ceee-eCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccce
Q psy307 490 DKQHLDIPVD----------MKYI-ADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYA 558 (1019)
Q Consensus 490 ~~~~~~~~~~----------~~~i-~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V 558 (1019)
...+...... .... .......+..++++++|.++++...++.|.+||. ++.. ..+........+
T Consensus 153 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~----~~~~~~~~~~~~ 227 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI----TEFKIPTPNARP 227 (299)
T ss_dssp CEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCE
T ss_pred CEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE----EEEECCCCCCCc
Confidence 5444322111 1111 1112344668999999998777777899999998 4421 122211122568
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee--eccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 559 CSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW--KAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 559 ~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l--~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+++++++|+++++...++.|.+||. +++. ..+ ..+...+.++++ +++ .++++.+ .+.+.++
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g-~l~v~~~-~~~l~~~ 291 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGE-TIWFAME-CDKIGKL 291 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSS-CEEEEET-TTEEEEE
T ss_pred eeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCC-CEEEEec-CCcEEEE
Confidence 89999999997777667889999998 4543 333 344567899999 776 4555554 4555454
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=2.9e-09 Score=127.86 Aligned_cols=300 Identities=13% Similarity=0.105 Sum_probs=184.7
Q ss_pred CCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecC-CCcEEEE
Q psy307 295 DYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KERRCVR 373 (1019)
Q Consensus 295 ~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~-~~~~~~~ 373 (1019)
|..+..+++...++.|.+++... .+.+.++.... .+..+.|+|+ ++++++++.|+.|.+||+. ...+.+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t-------~~v~~~i~~g~-~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGST-------YEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTT-------CCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred CCCceEEEEeCCCCeEEEEECCC-------CeEEEEEeCCC-CccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 44556777788889999998753 24455665433 5779999996 7888889999999999994 3455666
Q ss_pred EecccCccEeEEEEc----CCCCceeEEEee-----------------------------------------cCCCCcEE
Q psy307 374 TYYGHRQAVRDICFN----NTGTNFISAIRW-----------------------------------------FPKSAHLL 408 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fs----pdg~~~vs~i~~-----------------------------------------~p~~~~~L 408 (1019)
.+.... ....++|+ |||++++.+..+ ++..+.++
T Consensus 235 ~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 235 EIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 665433 35789999 688654332111 01112223
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEec-CCceEEEEEe
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTS-RKVAYCVKFH 486 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~-~~~v~~v~~~ 486 (1019)
++...+|.|.++|...................++.|+|+|++|++++ .+++|.++|+.+++.+..+.. ...+
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P------ 387 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP------ 387 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB------
T ss_pred EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC------
Confidence 33333455555554322222111112233455778999999987766 578999999999987776654 2211
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEe-cCCeEEEEEccCccc----ccceeEEeccccccceEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQS-MDNKILIFSALNRFK----LNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs-~Dg~I~iwd~~~~~~----~~~~~~l~gh~~~~~V~~ 560 (1019)
|...... .++|++..+ +++. .++.|.++|...... ...++++.... ..-..
T Consensus 388 --------------------hpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~ 444 (567)
T 1qks_A 388 --------------------HPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLF 444 (567)
T ss_dssp --------------------CCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCC
T ss_pred --------------------CCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEE
Confidence 1111111 247774444 4443 468999999876321 34455655442 22234
Q ss_pred EEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----c-eeeeeec--------cCCCEEEEEEcCCCCcEEEEEe--
Q psy307 561 LDFSPDMSYLISGDA-------DGKCYIWDWKTT-----K-LFKKWKA--------HDGVCISTLWHPHEPSKVVTAG-- 617 (1019)
Q Consensus 561 v~fspdg~~Lasgs~-------DG~I~IWDl~t~-----~-~l~~l~~--------h~~~V~sl~~sp~~~~~l~s~s-- 617 (1019)
+..+|++++|.+... .+.|.|+|+.+. . .+..+.. ....+..+.|+|+|...++|..
T Consensus 445 i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~ 524 (567)
T 1qks_A 445 IKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNG 524 (567)
T ss_dssp EECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECC
T ss_pred EEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecC
Confidence 778999999988663 358999999876 2 1233321 1346899999999965555533
Q ss_pred --CCCcEEEEeccceeeee
Q psy307 618 --WDAATAKVQDANIVKIA 634 (1019)
Q Consensus 618 --~Dg~I~iwwd~~i~ki~ 634 (1019)
.++.|.+ .|....++.
T Consensus 525 ~~~~~~i~v-~D~~t~~~~ 542 (567)
T 1qks_A 525 KDQESALVV-VDDKTLELK 542 (567)
T ss_dssp TTSCCEEEE-EETTTTEEE
T ss_pred CCCCCcEEE-EECCCceEE
Confidence 2678866 455555544
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.32 E-value=8.1e-11 Score=145.83 Aligned_cols=240 Identities=5% Similarity=-0.079 Sum_probs=154.6
Q ss_pred cCCCCeEEEEEcCCCCcEEE-----EeeCCCeEEEEecCCCcEEEEEecccCccE--eEEEEcCCCCceeEEEeecCCCC
Q psy307 333 GHTKGISAIRWFPKSAHLLL-----SCSMDCRVKLWEVYKERRCVRTYYGHRQAV--RDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLa-----Sgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V--~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+|...+.+++|||| |++|+ +|+.+..|++||+.++. .+. ..+...+ ..++|+|||
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~-~~~--~~~~~~~~~~~~~wspDg-------------- 179 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGE-WSK--VDVIEGGKYATPKWTPDS-------------- 179 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCC-BCS--SCCBSCCTTCCCEECTTS--------------
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCC-CcC--CcccCcccccceEEecCC--------------
Confidence 57678999999997 56665 34445789999995443 220 1122223 678888888
Q ss_pred cEEEEEeCCCc-------------EEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC----eEEEEEC
Q psy307 406 HLLLSCSMDCR-------------VKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR----YLKLWDT 465 (1019)
Q Consensus 406 ~~L~sgs~Dg~-------------I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg----~I~lWDl 465 (1019)
+.|+.++.|.. |++|++.+.. .++.....|...+.++.|+|||++|+.++.++ .|.+||.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 56777777665 9999995543 24444455667889999999999988887766 6777766
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec----CCeEEEEEccCcc
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM----DNKILIFSALNRF 541 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~----Dg~I~iwd~~~~~ 541 (1019)
.++.......... .+....+ ++|. ++..+. ++.|.+||+.++.
T Consensus 260 ~~~~~~~l~~~~~-------------------------------~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 260 GEKDFRLLVKGVG-------------------------------AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TCSSCEEEEECSS-------------------------------CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCCceEEeecCCC-------------------------------ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 5554322221111 1122233 4566 444443 5799999987653
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeecc-CCCEEEEEEcCCCCcEEEEEeC-
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKAH-DGVCISTLWHPHEPSKVVTAGW- 618 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~h-~~~V~sl~~sp~~~~~l~s~s~- 618 (1019)
.. ....+..+.....+..++|+ ++.+++++..||..+||.+. +++....+..+ .+.+.++.++|++..++++.+.
T Consensus 307 ~~-~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 307 RA-SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp GG-GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred cc-CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 21 12333333223457788888 77888999999988887654 46666667655 5678888999988655555544
Q ss_pred --CCcEEEE
Q psy307 619 --DAATAKV 625 (1019)
Q Consensus 619 --Dg~I~iw 625 (1019)
.++|+.|
T Consensus 385 ~~P~~v~~~ 393 (695)
T 2bkl_A 385 TTPRQIYKT 393 (695)
T ss_dssp TEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 3456544
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.27 E-value=7.3e-10 Score=124.05 Aligned_cols=239 Identities=7% Similarity=0.099 Sum_probs=136.8
Q ss_pred CCeEEEEEcCCCCcEEEEeeCC---C--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEE--
Q psy307 336 KGISAIRWFPKSAHLLLSCSMD---C--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLL-- 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~D---g--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L-- 408 (1019)
..+.+++|+|+ |..|+.++.+ + .|.+|++. +++....... .. +..++|+|+|..++....-.+......
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~~-~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADLE-TLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEETT-TTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEECC-CCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 46889999997 5666655543 3 47777874 3444443333 33 889999999853322211000000000
Q ss_pred -----------EEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC-------eEEEEECCCCce
Q psy307 409 -----------LSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR-------YLKLWDTESGEC 470 (1019)
Q Consensus 409 -----------~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg-------~I~lWDl~t~~~ 470 (1019)
+.......|.+||+ .++..+..+.. . .+..++|+|+| .+++++.++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~-~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDT-ESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEET-TTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEEC-CCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 00011357889998 44554344444 3 78899999999 777776542 334444435554
Q ss_pred EEEEecCCceEEEEEecCCCeeeeccCC--------Ccee---------eeCCCCCcccE-EEEcCCCCEEEEEecCCeE
Q psy307 471 ISRFTSRKVAYCVKFHPDEDKQHLDIPV--------DMKY---------IADPTMHSMPA-VTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 471 i~~~~~~~~v~~v~~~p~~~~~~~~~~~--------~~~~---------i~~~~~~~i~~-v~~spdg~~Lasgs~Dg~I 532 (1019)
...... ..+.. ++|++..+++.... ...+ +...+...+.. +.|+ ++ ++++++.++.+
T Consensus 211 ~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 211 EKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred EEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333332 33333 38888766542211 1111 11222345565 8899 88 88999999999
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeE-EEEeCCCCceeeeeeccCC
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKC-YIWDWKTTKLFKKWKAHDG 598 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I-~IWDl~t~~~l~~l~~h~~ 598 (1019)
++| +.++ . . ..+..+. +.|.+++|+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 286 ~l~-~~~g-~--~-~~~~~~~--~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 286 NLY-IWDG-E--I-KPIAKGR--HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEE-EESS-S--E-EEEECSS--SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEE-EcCC-c--e-EEEecCC--CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 999 8743 1 2 2333333 6688999999 677777777654 677665 54 444555543
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=5.4e-09 Score=114.99 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=153.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.+..-.-+..|+|+++.++++...++.|..||...... ..+ .....+.+++++++| +++++ .
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG--------------~l~v~-~ 71 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSG--------------GYVAT-I 71 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTS--------------SEEEE-E
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCC--------------CEEEE-E
Confidence 33345668899998788899988999999999854332 222 234678888888888 44443 3
Q ss_pred CCCcEEEEEccCCCeEEEEEcc----ccccEeEEEEecCCCEEEEEEcC---------CeEEEEECCC-CceEEEEecCC
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYG----HRQAVRDICFNNTGTNFISAGYD---------RYLKLWDTES-GECISRFTSRK 478 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~----H~~~V~sl~fspdg~~l~S~s~D---------g~I~lWDl~t-~~~i~~~~~~~ 478 (1019)
++.|.+||.. ++........ ....+++++++|+|+.+++...+ ....||.+.. ++.......
T Consensus 72 -~~~l~~~d~~-~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-- 147 (297)
T 3g4e_A 72 -GTKFCALNWK-EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-- 147 (297)
T ss_dssp -TTEEEEEETT-TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--
T ss_pred -CCeEEEEECC-CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--
Confidence 5689999984 3333222221 12458899999999976654332 2234444332 222111110
Q ss_pred ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEcc--CcccccceeEEec-ccc
Q psy307 479 VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSAL--NRFKLNRKKTFEG-HMV 554 (1019)
Q Consensus 479 ~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~--~~~~~~~~~~l~g-h~~ 554 (1019)
......++|+|+++.| ++.+.++.|.+|++. ++. +.....+.. ...
T Consensus 148 -----------------------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 148 -----------------------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNRRSVYKLEKE 197 (297)
T ss_dssp -----------------------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC-EEEEEEEEECCGG
T ss_pred -----------------------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc-ccCcEEEEECCCC
Confidence 0123468889999866 455667899999874 332 111112211 111
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeCC
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGWD 619 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~D 619 (1019)
.+.+..++++++|++.++...++.|.+||..+++.+..+..+...+++++|. |++..+++|...+
T Consensus 198 ~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 198 EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 2457889999999988888788899999999999999998887789999998 7876566666544
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.24 E-value=8e-10 Score=121.19 Aligned_cols=229 Identities=11% Similarity=0.019 Sum_probs=154.9
Q ss_pred CCCCCCC-eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+ .++++..++.|..|+... . +..+..+...+.+++++|+ +.++++...++.|.+||..+. +.
T Consensus 34 ~~d~~g~~l~~~~~~~~~i~~~~~~~--------~-~~~~~~~~~~~~~l~~~~d-g~l~v~~~~~~~i~~~d~~~g-~~ 102 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQNRTWAWSDDG--------Q-LSPEMHPSHHQNGHCLNKQ-GHLIACSHGLRRLERQREPGG-EW 102 (296)
T ss_dssp EEEGGGTEEEEEEGGGTEEEEEETTS--------C-EEEEESSCSSEEEEEECTT-CCEEEEETTTTEEEEECSTTC-CE
T ss_pred eEeCCCCEEEEEeCCCCEEEEEECCC--------C-eEEEECCCCCcceeeECCC-CcEEEEecCCCeEEEEcCCCC-cE
Confidence 4677888 677777888899987653 1 4566678888999999996 677777777899999998433 33
Q ss_pred EEEeccc----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEE----e-------------CCCcEEEEEccCCCeEEE
Q psy307 372 VRTYYGH----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC----S-------------MDCRVKLWEVYKEHRCVR 430 (1019)
Q Consensus 372 ~~~~~gh----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg----s-------------~Dg~I~IWDl~~~~~~~~ 430 (1019)
....... ...+.+++++|+| .++++. + ..+.|..++. .+. ..
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G--------------~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~g~-~~ 165 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDG--------------SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP--DGT-LS 165 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTS--------------CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT--TSC-EE
T ss_pred EEEeeccCCCCCCCCCCEEECCCC--------------CEEEECCccccccccccccccccCCCcEEEEECC--CCC-EE
Confidence 2222211 2346678888888 466652 2 1234444443 333 34
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECC-CCce---EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE-SGEC---ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~-t~~~---i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.+..+......++|+|+++.+++.+.++.|.+||+. ++.. ...+ ..
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~------------------------------~~ 215 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF------------------------------TV 215 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE------------------------------CC
T ss_pred EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe------------------------------eC
Confidence 445666778899999999988777778999999986 4443 1111 01
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEE-cCCCCEEEEEeCCCeEEEEeCC
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF-SPDMSYLISGDADGKCYIWDWK 585 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f-spdg~~Lasgs~DG~I~IWDl~ 585 (1019)
....+..++++++|+++++. ++.|.+|+.... ....+..+. . +.+++| +|+++.|++++.+| +.-++.+
T Consensus 216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~----~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD----ELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC----EEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC----EEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 12334578999999866665 899999998632 334555543 3 778899 68999998888764 5556666
Q ss_pred CCce
Q psy307 586 TTKL 589 (1019)
Q Consensus 586 t~~~ 589 (1019)
+.++
T Consensus 286 ~~~~ 289 (296)
T 3e5z_A 286 VRGL 289 (296)
T ss_dssp CCBC
T ss_pred cccc
Confidence 6554
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.24 E-value=6.9e-10 Score=119.44 Aligned_cols=235 Identities=6% Similarity=-0.031 Sum_probs=155.8
Q ss_pred CCCCCCeee-eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 294 TDYQGRSFL-HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 294 ~~~~gr~~~-~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
.+.+|+.++ ....++.|..|+...... ......+...+.++++.++ +.++++.. ++.|.+||.... . .
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~-~-~ 99 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGT-------TVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSN-N-Q 99 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC------------EECCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCS-C-C
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCccc-------ceEeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCc-e-E
Confidence 467888888 656778888886543211 1111234457889999996 66666555 899999998433 2 2
Q ss_pred EEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE
Q psy307 373 RTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF 451 (1019)
Q Consensus 373 ~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l 451 (1019)
..+. .....+.+++++++| .++++...++.|.+|+...... ..........+.+++++++|+.+
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g--------------~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQG--------------AVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp EECCCCSCSSEEEEEECTTC--------------CEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEE
T ss_pred eeeecCCcCCCcceEECCCC--------------CEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEE
Confidence 2222 233567888888877 5667777788999997633222 22222333467889999999877
Q ss_pred EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 452 ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 452 ~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
++...++.|.+||..++....... .....+..++++++|.++++...++.
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~------------------------------~~~~~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPF------------------------------TDITAPWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCC------------------------------SSCCSEEEEEECTTCCEEEEETTTSC
T ss_pred EEECCCCEEEEEecCCCceEeecc------------------------------cCCCCceEEEECCCCCEEEEECCCCc
Confidence 776678899999987654322100 01134557888999977777777899
Q ss_pred EEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q psy307 532 ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL 589 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~ 589 (1019)
|.+|+..+.... .....+ ...+.+++++++|+++++...+++|+++++...+.
T Consensus 215 v~~~~~~~~~~~---~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 215 VVKLLAGSTTST---VLPFTG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEECTTCSCCE---ECCCCS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEEEcCCCCcce---eeccCC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 999998654221 111111 14578999999999888888999999999876654
No 193
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.24 E-value=2.7e-10 Score=129.61 Aligned_cols=227 Identities=13% Similarity=0.066 Sum_probs=136.5
Q ss_pred CcEEEEEecccCcc-----EeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCC--CcEEEEEccCCCeEEEEEccccccE
Q psy307 368 ERRCVRTYYGHRQA-----VRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMD--CRVKLWEVYKEHRCVRTYYGHRQAV 439 (1019)
Q Consensus 368 ~~~~~~~~~gh~~~-----V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~D--g~I~IWDl~~~~~~~~~l~~H~~~V 439 (1019)
.+..+..+..+... +.+++|+|+|. .|+.+ ..+ ..|.+||+ .++.......++....
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~--------------~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~ 83 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGK--------------KLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNT 83 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSC--------------EEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCT
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCC--------------EEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCcc
Confidence 33444555544333 67778888883 44443 333 36788887 4444444333333333
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc-eEE-------------------EEEecCCCeeee-----
Q psy307 440 RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV-AYC-------------------VKFHPDEDKQHL----- 494 (1019)
Q Consensus 440 ~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~-v~~-------------------v~~~p~~~~~~~----- 494 (1019)
..+.|+|+|++|+.++.++.|.+||+.+++.......+.. ... +.++|++....+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 3478999999999999999999999999887665553322 111 234565543222
Q ss_pred ----------ccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEecC------CeEEEEEccCcccccceeEEeccccccc
Q psy307 495 ----------DIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSMD------NKILIFSALNRFKLNRKKTFEGHMVAGY 557 (1019)
Q Consensus 495 ----------~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~D------g~I~iwd~~~~~~~~~~~~l~gh~~~~~ 557 (1019)
+...............+..+.|+| +++.|+..+.+ ..|.+||+.++.. ..+..+.....
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~ 239 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----RKIKEHAEGES 239 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----EESSCCCTTEE
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----eEeeccCCCcc
Confidence 111111111112334567889999 78877776643 3688888865421 22222211234
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceeeeeeccCCCEEEEEEcC-CCCcEEEEEe
Q psy307 558 ACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTKLFKKWKAHDGVCISTLWHP-HEPSKVVTAG 617 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp-~~~~~l~s~s 617 (1019)
+..++|+|||++|+.++.+ +.|++||+.+++...... ..+ .. +.|+| ++. ++++++
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~-~l~~~~ 301 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGS-LMVGDG 301 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSS-EEEEEE
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCc-eEEEec
Confidence 7789999999988776544 459999999887543322 222 33 88999 884 666654
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=3e-09 Score=115.96 Aligned_cols=238 Identities=8% Similarity=-0.022 Sum_probs=169.5
Q ss_pred CCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCC-CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEE
Q psy307 296 YQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHT-KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRT 374 (1019)
Q Consensus 296 ~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~-~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~ 374 (1019)
..|+.++.++.|+.|.+|+.. .++.+.++..|. ..+.++.++|+ |++++ +.++.|..||. + ++.+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~-------tG~~~w~~~~~~~~~~~~~~~~pd-G~ilv--s~~~~V~~~d~-~-G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKD-------TKEIVWEYPLEKGWECNSVAATKA-GEILF--SYSKGAKMITR-D-GRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETT-------TTEEEEEEECCTTCCCCEEEECTT-SCEEE--ECBSEEEEECT-T-SCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECC-------CCeEEEEeCCCccCCCcCeEECCC-CCEEE--eCCCCEEEECC-C-CCEEEE
Confidence 357889999999999999864 245667777766 57899999996 77777 45788999997 3 566777
Q ss_pred eccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-CCcEEEEEccCCCeEEEEEc------cccccEeEEEEec
Q psy307 375 YYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-DCRVKLWEVYKEHRCVRTYY------GHRQAVRDICFNN 446 (1019)
Q Consensus 375 ~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-Dg~I~IWDl~~~~~~~~~l~------~H~~~V~sl~fsp 446 (1019)
+..+ ...+.++.+.++| +++++.+. ++.|..+|. .++.+..+. ++......+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~dG--------------~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDG--------------NALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp EECCTTCEEEEEEECTTS--------------CEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred EcCCCCccccccEECCCC--------------CEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECC
Confidence 7764 3468888888888 57777776 666666664 555555443 2223455668899
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
+|+++++.+.++.|..||.. |+.+.++..... ..++...++|+.++++
T Consensus 135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-------------------------------~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-------------------------------PFSSAFLDNGDCLVAC 182 (276)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-------------------------------CCEEEECTTSCEEEEC
T ss_pred CCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-------------------------------ccceeEcCCCCEEEEe
Confidence 99999999999999999998 998888765422 2234556788899888
Q ss_pred ecCCeEEEEEccCcccccceeEEeccc----cccceEEEEEcCCCCEEEEEeCC--------CeEEEEeC-CCCceeeee
Q psy307 527 SMDNKILIFSALNRFKLNRKKTFEGHM----VAGYACSLDFSPDMSYLISGDAD--------GKCYIWDW-KTTKLFKKW 593 (1019)
Q Consensus 527 s~Dg~I~iwd~~~~~~~~~~~~l~gh~----~~~~V~~v~fspdg~~Lasgs~D--------G~I~IWDl-~t~~~l~~l 593 (1019)
+.++.|..+|..++..+ ..+.... .-..+..+...++|.++++.... +..+++++ .+++.+-++
T Consensus 183 ~~~~~v~~~d~~tG~~~---w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 183 GDAHCFVQLNLESNRIV---RRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp BTTSEEEEECTTTCCEE---EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCCCeEEEEeCcCCcEE---EEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 88889999998876433 3343221 11347888999999988876421 23355555 567777766
Q ss_pred ecc
Q psy307 594 KAH 596 (1019)
Q Consensus 594 ~~h 596 (1019)
..+
T Consensus 260 ~~~ 262 (276)
T 3no2_A 260 NDK 262 (276)
T ss_dssp CCT
T ss_pred cCc
Confidence 544
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=4.3e-09 Score=126.35 Aligned_cols=249 Identities=14% Similarity=0.092 Sum_probs=165.0
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc-CCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY-KEH 426 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~-~~~ 426 (1019)
+.++++...++.|.++|. .+++.+.++... ..+..+.|+||| +++++++.|+.|.+||+. .+.
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~g-~~p~~v~~SpDG--------------r~lyv~~~dg~V~viD~~~~t~ 230 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDTG-YAVHISRLSASG--------------RYLFVIGRDGKVNMIDLWMKEP 230 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEECS-SCEEEEEECTTS--------------CEEEEEETTSEEEEEETTSSSC
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeCC-CCccceEECCCC--------------CEEEEEcCCCeEEEEECCCCCC
Confidence 456777788999999999 455666666533 356789999999 688888999999999994 355
Q ss_pred eEEEEEccccccEeEEEEe----cCCCEEEEEEc-CCeEEEEECCCCceEEEEecCC------------ceEEEEEecCC
Q psy307 427 RCVRTYYGHRQAVRDICFN----NTGTNFISAGY-DRYLKLWDTESGECISRFTSRK------------VAYCVKFHPDE 489 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fs----pdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~------------~v~~v~~~p~~ 489 (1019)
+.+..+.... ....++|+ |+|++++++++ +++|.++|..+.+.+.++.... .+..+..++++
T Consensus 231 ~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 231 TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 5666665433 35789999 69998777665 5999999999999988876431 34566667765
Q ss_pred CeeeeccCCCce-eeeC------------CCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccccceeE-E-eccc
Q psy307 490 DKQHLDIPVDMK-YIAD------------PTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKLNRKKT-F-EGHM 553 (1019)
Q Consensus 490 ~~~~~~~~~~~~-~i~~------------~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~~~-l-~gh~ 553 (1019)
....+....... .+.+ ........+.|+|+|+++++++ .++.|.++|+.++.....+.. - ..|.
T Consensus 310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 544433221111 1111 1122344678999999987765 578999999998743322211 0 0121
Q ss_pred cccceEEEEEcCCCCEE-EEEe-CCCeEEEEeCCC-------CceeeeeeccCCCEEEEEEcCCCCcEEEEE
Q psy307 554 VAGYACSLDFSPDMSYL-ISGD-ADGKCYIWDWKT-------TKLFKKWKAHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~L-asgs-~DG~I~IWDl~t-------~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
. ..+. + ++|++..+ +++. .+++|.++|..+ .+.++++....+.-..+..+|++..+.++.
T Consensus 390 g-~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 390 G-RGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp T-TCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred c-ccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 1 1121 2 58875544 4443 568999999988 677888876544434577899985444433
No 196
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.19 E-value=1.9e-09 Score=133.72 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=154.5
Q ss_pred CCCCCCCCeeeeCCCCC-----ceeeecCCCCCCccCCcccee-eeccCCCCeEEEEEcCCCCcEEEEeeCCCe------
Q psy307 292 DPTDYQGRSFLHPPHDV-----GTNLRSDTPPDRCFLPKTQVH-TWEGHTKGISAIRWFPKSAHLLLSCSMDCR------ 359 (1019)
Q Consensus 292 ~~~~~~gr~~~~~~~D~-----~v~lw~~~~~~~~~lp~~~i~-~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~------ 359 (1019)
..++++|+.++.+..++ .|.+|+..... .+. ++.+ ..+..++|+|| ++.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-------~~~~~~~~--~~~~~~~wspD-g~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-------ELPDVLER--VKFSCMAWTHD-GKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-------EEEEEEEE--ECSCCEEECTT-SSEEEEEECCCCSSCCSS
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-------CCcccccC--cccceEEEEeC-CCEEEEEEECCccccccc
Confidence 45788999988654432 78888876432 222 2222 23778999997 667777776655
Q ss_pred ----------EEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-----CCcEEEEE
Q psy307 360 ----------VKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM-----DCRVKLWE 421 (1019)
Q Consensus 360 ----------I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~-----Dg~I~IWD 421 (1019)
|++|++.+.. .++.....|...+..+.|+|||. +|+.++. +..|.+||
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--------------~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--------------YVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--------------EEEEEEECSSSSCCEEEEEE
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--------------EEEEEEEccCCCccEEEEEE
Confidence 9999995443 23333334566678889999884 4444433 57899999
Q ss_pred ccC------CCeEEEEEccccccEeEEEEecCCCEEEEEEcC----CeEEEEECCCCce--EEEEecCCceEEEEEecCC
Q psy307 422 VYK------EHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD----RYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 422 l~~------~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D----g~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~ 489 (1019)
+.. .......+..+...+.. .|+++|+.|+..+.+ +.|.+||+.++.. ...+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------- 333 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH----------- 333 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-----------
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-----------
Confidence 965 33245556666666655 588999988777654 3599999887631 11121110
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCe--EEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNK--ILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~--I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
....+..+++++++.++++...++. |.+|++.++. ....+..+. +.+..++++|++
T Consensus 334 -----------------~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~---~~~~l~~~~--~~v~~~~~s~d~ 391 (710)
T 2xdw_A 334 -----------------EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEV--GSVVGYSGQKKD 391 (710)
T ss_dssp -----------------SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCS--SEEEEEECCTTC
T ss_pred -----------------CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC---EEEecCCCC--ceEEEEecCCCC
Confidence 0123455677777788888888885 5566664442 234455553 678889999999
Q ss_pred CEEEEE-e---CCCeEEEEeCCCCc
Q psy307 568 SYLISG-D---ADGKCYIWDWKTTK 588 (1019)
Q Consensus 568 ~~Lasg-s---~DG~I~IWDl~t~~ 588 (1019)
..++.. + ..++|++||+.+++
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 866533 2 34789999999887
No 197
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.18 E-value=1.3e-08 Score=117.42 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=158.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
.....|+|+++ +.++++...++.|++||.. .+........ ..... ++|++++ +.|+++..++
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~-~g~~~~~~~~-~~~~~-ia~~~~g--------------~~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVD-DNKVTTVHPG-FKGGK-PAVTKDK--------------QRVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETT-TTEEEEEEET-CCBCB-CEECTTS--------------SEEEEEBSST
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECC-CCEEEEeecc-CCCCc-eeEecCC--------------CcEEEEecCC
Confidence 36889999986 7788888888999999984 3444433333 22233 8888887 5777777765
Q ss_pred --cEEEEEccCCCeEEEEE---cc-ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 416 --RVKLWEVYKEHRCVRTY---YG-HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 416 --~I~IWDl~~~~~~~~~l---~~-H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
.|.+|+...... ...+ .. +...+.+++++|++..|+.+..++.|..||..++... .+.... ..+
T Consensus 193 ~~~I~~~d~~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~--------~~g 262 (409)
T 3hrp_A 193 THTVYVYMKASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLE--------LSG 262 (409)
T ss_dssp TCEEEEEEGGGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECC--------CCS
T ss_pred CceEEEEEcCCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccc--------ccC
Confidence 788888754433 2222 22 4566788999996556666777889999999876532 111000 000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEEccCcccccceeEEeccc-------------cc
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM-------------VA 555 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~-------------~~ 555 (1019)
.....+...++++|+ +.++++...++.|+.|+.... ...+.++. .-
T Consensus 263 ---------------~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~ 322 (409)
T 3hrp_A 263 ---------------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALF 322 (409)
T ss_dssp ---------------CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBC
T ss_pred ---------------CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEe
Confidence 000001137899995 666666677889999987643 22232321 01
Q ss_pred cceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeecc---------------CCCEEEEEEcCCCCcEEEEEeCC
Q psy307 556 GYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAH---------------DGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h---------------~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
.....++++|+|+++++-+ .+++|+.||+.++.. .++.++ -....++++++++ .++++-..+
T Consensus 323 ~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n 400 (409)
T 3hrp_A 323 AQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWG 400 (409)
T ss_dssp SSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTT
T ss_pred CCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCC
Confidence 3478999999999777777 789999999877764 444443 1357899999986 677777777
Q ss_pred CcEEEE
Q psy307 620 AATAKV 625 (1019)
Q Consensus 620 g~I~iw 625 (1019)
++|+++
T Consensus 401 ~~Ir~i 406 (409)
T 3hrp_A 401 KAIRKY 406 (409)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 787665
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=7.6e-08 Score=104.60 Aligned_cols=265 Identities=6% Similarity=-0.041 Sum_probs=171.8
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM 413 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~ 413 (1019)
....+.++++.++ +.+.++...++.|.+||.. .......+..+...+.++++.++| .++++...
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g--------------~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG--------------DIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--------------CEEEEETT
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC--------------CEEEEecC
Confidence 4457889999996 7777777778999999985 222222233334567888888777 56666666
Q ss_pred CCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEE-Ee-cCCceEEEEEecCCCe
Q psy307 414 DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISR-FT-SRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 414 Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~-~~-~~~~v~~v~~~p~~~~ 491 (1019)
++.|..||.. ..............+.++++.++|+.+++...++.|..||.. ++.... +. ....+..+++.+++..
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 7889999985 333222333345678999999999887777668899999987 655432 22 2356788999888764
Q ss_pred eeeccCCCc----------eeeeC-CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 492 QHLDIPVDM----------KYIAD-PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 492 ~~~~~~~~~----------~~i~~-~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+....... ..+.. .....+..++++++|.++++....+.|.+|+.... . ..+........+.+
T Consensus 160 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~----~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 160 WFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-I----SEYDIPTPNARPHA 234 (300)
T ss_dssp EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-E----EEEECSSTTCCEEE
T ss_pred EEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-E----EEEECCCCCCCceE
Confidence 333221111 11111 12234668899999987777777789999998322 1 11211111255789
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceee-eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFK-KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~-~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
++++++|++.++...++.|..||. +++... .+......+.++++.++| .++++.. . .|..+
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKL 296 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEE
T ss_pred EEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEe
Confidence 999999997777767789999998 454332 223334567889999887 3444443 4 55443
No 199
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=7e-09 Score=115.96 Aligned_cols=246 Identities=10% Similarity=0.028 Sum_probs=162.5
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.++.++....++.|.+++... .+.+.++.. ......++++++ +.+.++...++.|.+||. .+.+....+.
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t-------~~~~~~i~~-~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~-~t~~~~~~i~ 122 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINT-------FKEVGRITG-FTSPRYIHFLSD-EKAYVTQIWDYRIFIINP-KTYEITGYIE 122 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTT-------CCEEEEEEC-CSSEEEEEEEET-TEEEEEEBSCSEEEEEET-TTTEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECcc-------cEEEEEcCC-CCCCcEEEEeCC-CeEEEEECCCCeEEEEEC-CCCeEEEEEE
Confidence 466777777788899997653 345566643 467889999886 555555558999999999 4455555544
Q ss_pred ccC-----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe-CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCE
Q psy307 377 GHR-----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS-MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 377 gh~-----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
... .....+++ .++ .++++.. .++.|.+||+ .+.+....+... .....++++|+|+.
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~--------------~lyv~~~~~~~~v~viD~-~t~~~~~~i~~g-~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGK--------------YVYVNCWSYQNRILKIDT-ETDKVVDELTIG-IQPTSLVMDKYNKM 185 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETT--------------EEEEEECTTCCEEEEEET-TTTEEEEEEECS-SCBCCCEECTTSEE
T ss_pred cCCccccCCCcceEEE-ECC--------------EEEEEcCCCCCEEEEEEC-CCCeEEEEEEcC-CCccceEEcCCCCE
Confidence 322 13445555 222 3444443 4899999999 445555555432 33567899999987
Q ss_pred EEEEEcC----------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC
Q psy307 451 FISAGYD----------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 451 l~S~s~D----------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg 520 (1019)
++++..+ +.|.+||..+++....+.... ......++++|++
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-----------------------------g~~p~~la~~~d~ 236 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-----------------------------GDWPSEVQLNGTR 236 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-----------------------------TCCCEEEEECTTS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-----------------------------CCCceeEEEecCC
Confidence 7776655 789999999988766554311 1234567778888
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEE----eCCCeEEEEeCCCCceeeeeec
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISG----DADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasg----s~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+.|.+... .|.+||..++.... ...+... ......++++| ++.+.++. ..++.|.+||.. ++.+.++..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceee-eeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 88877654 89999997654221 1111111 24578899999 56666665 578999999998 999888865
Q ss_pred cCCCEEEEEE
Q psy307 596 HDGVCISTLW 605 (1019)
Q Consensus 596 h~~~V~sl~~ 605 (1019)
-.+ ...++|
T Consensus 311 G~~-P~~~~~ 319 (328)
T 3dsm_A 311 GII-PGAFCW 319 (328)
T ss_dssp EES-EEEEEE
T ss_pred ccC-cceEEE
Confidence 333 345554
No 200
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=4.3e-08 Score=109.44 Aligned_cols=230 Identities=10% Similarity=0.001 Sum_probs=147.2
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
-..+.+|+|+++.+++++..++.|.+||.... .. ..+. ....+.++.++++| .++++ +.+ .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~v~~i~~~~dg--------------~l~v~-~~~-g 110 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKISDS--------------KQLIA-SDD-G 110 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEETT--------------EEEEE-ETT-E
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cE-EEEE-CCCcceEEEEeCCC--------------eEEEE-ECC-C
Confidence 35678999987888888888999999998543 32 2222 34568888888887 44444 344 4
Q ss_pred EEEEEccCCCeEEEEEcc---c-cccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 417 VKLWEVYKEHRCVRTYYG---H-RQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~---H-~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
|.+||... +........ + ...+.+++++|+|+.+++...+ +.|..+| +++.......
T Consensus 111 l~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~---------- 177 (326)
T 2ghs_A 111 LFLRDTAT-GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD---------- 177 (326)
T ss_dssp EEEEETTT-CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----------
T ss_pred EEEEECCC-CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----------
Confidence 89999843 333222211 1 2468899999999876655432 3455555 3432211110
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEcc--CcccccceeEEec-cccccceEEEE
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSAL--NRFKLNRKKTFEG-HMVAGYACSLD 562 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~--~~~~~~~~~~l~g-h~~~~~V~~v~ 562 (1019)
......++|+|+|+.++.+ +.++.|.+|++. ++..+.....+.. ....+.+..++
T Consensus 178 ---------------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~ 236 (326)
T 2ghs_A 178 ---------------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV 236 (326)
T ss_dssp ---------------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred ---------------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence 0123467889999876554 557899999985 3301111112211 11124567899
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEc-CCCCcEEEEEeCCC
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWH-PHEPSKVVTAGWDA 620 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s-p~~~~~l~s~s~Dg 620 (1019)
++++|.+.++...++.|.+||. +++.+..+..+...+.+++|. +++..++++...++
T Consensus 237 ~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 237 CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 9999998887777789999998 678888887777789999998 88755555555543
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.14 E-value=4.8e-09 Score=130.87 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=143.4
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeC-C----CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSM-D----CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~-D----g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
+|...+..++|||| |++|+.++. + ..|++||+.++ +.+.. ..+...+..++|+|| . .
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~--------------~ 221 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-D--------------A 221 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-S--------------E
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-C--------------E
Confidence 45557889999997 555555443 3 35999999544 33322 111111245566666 4 3
Q ss_pred EEEEeCC--------------CcEEEEEccCCC---eEEEEEccccccEeEEEEecCCCEEEEEEcCC-----eEEEEEC
Q psy307 408 LLSCSMD--------------CRVKLWEVYKEH---RCVRTYYGHRQAVRDICFNNTGTNFISAGYDR-----YLKLWDT 465 (1019)
Q Consensus 408 L~sgs~D--------------g~I~IWDl~~~~---~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg-----~I~lWDl 465 (1019)
|+.++.+ ..|++|++.+.. .++.....+...+.++.|+|||++|+..+.++ .|.+||+
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 3333333 348899985443 23333334445688999999999988877654 7999998
Q ss_pred CCC--ceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC----CeEEEEEccC
Q psy307 466 ESG--ECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD----NKILIFSALN 539 (1019)
Q Consensus 466 ~t~--~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D----g~I~iwd~~~ 539 (1019)
.++ ++...+..+. ...... ++|+|+.|+..+.+ +.|.+||+.+
T Consensus 302 ~~~~~~~~~~l~~~~------------------------------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 302 TNGKIGPVTALIPDL------------------------------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp ETTEECCCEEEECSS------------------------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred CCCCCcccEEecCCC------------------------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 776 3122222111 111112 34778888877753 4699999876
Q ss_pred cccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeeeec-cCCCEEEEEEcCCCCcEEEEEe
Q psy307 540 RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK-TTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 540 ~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~-t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
.. ......+..+. ..+..++++ ++.++++...||..+||.+. +++....+.. +.+.+..+.++|++..++++.+
T Consensus 351 ~~-~~~~~l~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 351 ST-PRFDTVVPESK--DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp SS-CEEEEEECCCS--SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred Cc-cccEEEecCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 42 01122233332 346677887 66788888889987777554 4666666665 3567889999998865555554
Q ss_pred CC---CcEEEE
Q psy307 618 WD---AATAKV 625 (1019)
Q Consensus 618 ~D---g~I~iw 625 (1019)
.. ++|+.|
T Consensus 427 s~~~P~~i~~~ 437 (741)
T 1yr2_A 427 SFTQPATVLAL 437 (741)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCCCCEEEEE
Confidence 33 555443
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.13 E-value=8.7e-08 Score=104.06 Aligned_cols=263 Identities=7% Similarity=-0.048 Sum_probs=169.4
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+++|+.++....++.|..|+.. ... ....+..+...+.++++.++ +.++++...++.|..||.. ......
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-~~~------~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-GKI------TEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-CCE------EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-CCe------EEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 46789988887767888888655 111 01112234578999999995 6777777778999999974 222112
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
.+......+.++++.++| .++++...++.|.+||. ...........+...+.+++++++|+.+++
T Consensus 93 ~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 157 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNG--------------DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFT 157 (299)
T ss_dssp ECSSTTCCEEEEEECTTS--------------CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred eCCCcCCCceeeEECCCC--------------CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEE
Confidence 222344567788888777 56676667889999998 433333333445567899999999987777
Q ss_pred EEcCCeEEEEECCCCceEEE-Ee-cCCceEEEEEecCCCeeeeccCC----------Cceee-eCCCCCcccEEEEcCCC
Q psy307 454 AGYDRYLKLWDTESGECISR-FT-SRKVAYCVKFHPDEDKQHLDIPV----------DMKYI-ADPTMHSMPAVTSSPNN 520 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~-~~-~~~~v~~v~~~p~~~~~~~~~~~----------~~~~i-~~~~~~~i~~v~~spdg 520 (1019)
...++.|..||. +++.... .. ....+..+++.+++...+..... ..... .......+.+++++++|
T Consensus 158 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 158 ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTT
T ss_pred eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCC
Confidence 666789999999 6665443 22 23457889998887643332111 11111 11123456789999999
Q ss_pred CEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 521 KWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 521 ~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
..+++...++.|.+||.. + . ...+........+.++++ ++|.++++.+ .+.|..++.++++
T Consensus 237 ~l~v~~~~~~~i~~~d~~-g-~---~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTSN-N-I---IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp CEEEEETTTTEEEEEETT-T-E---EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CEEEeccCCceEEEECCC-C-c---eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 877766678999999984 2 1 122221111255888999 9998777665 5667777876653
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.11 E-value=1.4e-07 Score=107.31 Aligned_cols=264 Identities=6% Similarity=-0.095 Sum_probs=161.3
Q ss_pred CcEEEEeeC--CC---eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------
Q psy307 348 AHLLLSCSM--DC---RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS---------- 412 (1019)
Q Consensus 348 g~lLaSgs~--Dg---~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs---------- 412 (1019)
++.++++.. .+ +|.++|.. ..+.+.++.....+ .++++|||+ .++.+.
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~~g~~p--~i~~spDg~--------------~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVNGGFLP--NPVAAHSGS--------------EFALASTSFSRIAKGK 94 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECC-CCeEEEEecCCCCC--CeEECCCCC--------------EEEEEeccccccccCC
Confidence 455555543 22 88999984 55666666654444 899999994 555543
Q ss_pred CCCcEEEEEccCCCeEEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEE-EecCCceE-
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISR-FTSRKVAY- 481 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~-~~~~~~v~- 481 (1019)
.++.|.+||.. +.+.+..+.-. ......+.|+|||++++.++. ++.|.++| .+++.+.. +.....+.
T Consensus 95 ~~~~v~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~ 172 (373)
T 2mad_H 95 RTDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHI 172 (373)
T ss_pred CCCeEEEEECC-CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEE
Confidence 46889999994 44444443221 123457899999999998874 57899999 99998888 65433211
Q ss_pred -------EEEEecCCCeeeeccCCCcee-eeC-----CCCCc-ccEEEEcCCCCEEEEEecCCeEEEEEccCccccccee
Q psy307 482 -------CVKFHPDEDKQHLDIPVDMKY-IAD-----PTMHS-MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 482 -------~v~~~p~~~~~~~~~~~~~~~-i~~-----~~~~~-i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~ 547 (1019)
-+.+++++....++. ..... ... ..... .....+.+++..++..+..+.+.+.|+..... ....
T Consensus 173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~ 250 (373)
T 2mad_H 173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEee
Confidence 133445555554444 21111 000 00011 11234455555544445788999999865421 1112
Q ss_pred EEeccc--------cccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 548 TFEGHM--------VAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 548 ~l~gh~--------~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
.+.-.. .......+.++||++.++.+.. .+.|.++|..+++.+.++.... ...+++|+|++
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg 329 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDG 329 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCC
Confidence 221100 0122334789999998777643 3579999999999999986433 57899999999
Q ss_pred CcEEEEEe-CCCcEEEEeccceeeee
Q psy307 610 PSKVVTAG-WDAATAKVQDANIVKIA 634 (1019)
Q Consensus 610 ~~~l~s~s-~Dg~I~iwwd~~i~ki~ 634 (1019)
...++++. .++.|.+ +|....++.
T Consensus 330 ~~~l~v~~~~~~~V~V-iD~~t~~vv 354 (373)
T 2mad_H 330 GPDLYALSAGTEVLHI-YDAGAGDQD 354 (373)
T ss_pred CeEEEEEcCCCCeEEE-EECCCCCEE
Confidence 54677776 4788855 455544444
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.10 E-value=3.4e-08 Score=111.81 Aligned_cols=278 Identities=10% Similarity=-0.021 Sum_probs=171.7
Q ss_pred cCCCCcEEEEeeC-----CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 344 FPKSAHLLLSCSM-----DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 344 spd~g~lLaSgs~-----Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
.|+ ++.+++... ++.|.+.|. ...+.+.++..-..+ . +.++|||..+..+..+.+.. .-|..++.|.
T Consensus 41 ~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~----~~G~~~~~Vs 112 (386)
T 3sjl_D 41 APD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRI----ARGERTDYVE 112 (386)
T ss_dssp CCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEET----TEEEEEEEEE
T ss_pred CCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC-c-EEECCCCCEEEEEccccccc----ccCCCCCEEE
Confidence 454 445555443 689999998 556777777655555 3 99999995322111110000 0012467899
Q ss_pred EEEccCCCeEEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCc----e----E
Q psy307 419 LWEVYKEHRCVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKV----A----Y 481 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~----v----~ 481 (1019)
+||. .+.+.+..+.-. ......+.|+|||++++.+.. ++.|.++|+.+++.+.++..... + .
T Consensus 113 viD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~ 191 (386)
T 3sjl_D 113 VFDP-VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 191 (386)
T ss_dssp EECT-TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEC-CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCce
Confidence 9999 445555554321 124556799999999888874 68999999999999998875431 1 1
Q ss_pred EEEEecCCCeeeeccCCCcee------eeCCCCCcc-cEEEE-cCCCCEEEEEecCCeEEEEEccCcccccceeEEe---
Q psy307 482 CVKFHPDEDKQHLDIPVDMKY------IADPTMHSM-PAVTS-SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE--- 550 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~------i~~~~~~~i-~~v~~-spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~--- 550 (1019)
-+..++++....+......+. ........+ ....| .++|++++ .+.+|+|+++|+.+... .....+.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~-~v~~~~~~~~ 269 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA-KFLPAVEALT 269 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC-EECCCEESSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc-eeecceeccc
Confidence 246788888777765432221 111111122 12355 46776555 55689999999875421 1111111
Q ss_pred ------ccccccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEE
Q psy307 551 ------GHMVAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVV 614 (1019)
Q Consensus 551 ------gh~~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~ 614 (1019)
+.. .+....++++|+++.++.... .+.|.+.|+++++.+..+..-. .++++++++++..+|+
T Consensus 270 ~~~~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 270 EAERADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLY 347 (386)
T ss_dssp HHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEE
T ss_pred ccccccccc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEE
Confidence 100 012234677999998777643 2579999999999999987533 6789999999853554
Q ss_pred E-EeCCCcEEEEeccceeeeee
Q psy307 615 T-AGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 615 s-~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
+ ...++.|.++ |....+...
T Consensus 348 ~tn~~~~~VsVi-D~~t~k~~~ 368 (386)
T 3sjl_D 348 ALSTGDKTLYIH-DAESGEELR 368 (386)
T ss_dssp EEETTTTEEEEE-ETTTCCEEE
T ss_pred EEcCCCCeEEEE-ECCCCcEEE
Confidence 4 5568888554 555555443
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=1.9e-08 Score=110.92 Aligned_cols=237 Identities=10% Similarity=0.092 Sum_probs=153.8
Q ss_pred cceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 326 TQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 326 ~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
..+..+..+........|+|++..+++++..++.|..|+. .+. ...+..+...+..++++++|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~--~~~~~~~~~~~~gl~~d~dG-------------- 97 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT--VDVLLDATAFTNGNAVDAQQ-------------- 97 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC--EEEEEESCSCEEEEEECTTS--------------
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC--EEEEeCCCCccceeeECCCC--------------
Confidence 3445555566678889999976568888889999999997 332 34455566778889998888
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEc---cc-cccEeEEEEecCCCEEEE----EEc-------------CCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYY---GH-RQAVRDICFNNTGTNFIS----AGY-------------DRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H-~~~V~sl~fspdg~~l~S----~s~-------------Dg~I~lWD 464 (1019)
+++++...++.|.+|+.. +....... +. ...+.+++++++|+.+++ |.. .+.|..||
T Consensus 98 ~l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD--GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT--SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC--CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 555555556889999974 33222211 11 234678999999998776 221 24566666
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC------CeEEEEEcc
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD------NKILIFSAL 538 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D------g~I~iwd~~ 538 (1019)
..+++..... . ......++|+|+++.|+++... +.|.+|++.
T Consensus 176 ~~~g~~~~~~-~-------------------------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 176 PDGSPLQRMA-D-------------------------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp SSSCCCEEEE-E-------------------------------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred CCCCcEEEEe-c-------------------------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 6555433211 0 0123457888999877777655 789999987
Q ss_pred CcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeC
Q psy307 539 NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 539 ~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~ 618 (1019)
... +.....+... ..+.+..++++++|++.+ ++.+| |.+|+. .++.+..+..+. .+.+++|.|++. .|+.++.
T Consensus 224 ~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~-~L~it~~ 296 (305)
T 3dr2_A 224 DGA-LHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQ-RLFITGG 296 (305)
T ss_dssp TTE-EEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSC-EEEEEET
T ss_pred CCC-ccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCC-EEEEEcC
Confidence 543 2212222111 123456789999999554 44554 999997 677887777665 578999998874 5555555
Q ss_pred CC
Q psy307 619 DA 620 (1019)
Q Consensus 619 Dg 620 (1019)
++
T Consensus 297 ~~ 298 (305)
T 3dr2_A 297 PC 298 (305)
T ss_dssp TE
T ss_pred Ce
Confidence 53
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=2.3e-07 Score=105.64 Aligned_cols=260 Identities=8% Similarity=-0.120 Sum_probs=154.9
Q ss_pred CCCCeeeeCCC--CC---ceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeE
Q psy307 296 YQGRSFLHPPH--DV---GTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRV 360 (1019)
Q Consensus 296 ~~gr~~~~~~~--D~---~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I 360 (1019)
++++.+..... .. .|.+++... .+.+.++.....+ .++++|| ++.|+.+. .++.|
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t-------~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGS-------GSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCC-------CeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeE
Confidence 45555444432 22 567776542 2345555544444 8999997 56666654 47889
Q ss_pred EEEecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEE
Q psy307 361 KLWEVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRT 431 (1019)
Q Consensus 361 ~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~ 431 (1019)
.+||.. ..+.+..+.-. ...-..+.|+||| ++|+.++. ++.|.++| . +++.+..
T Consensus 100 ~viD~~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG--------------~~l~v~n~~~~~~v~viD-~-t~~~~~~ 162 (373)
T 2mad_H 100 EVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNN--------------ADLLFFQFAAGPAVGLVV-Q-GGSSDDQ 162 (373)
T ss_pred EEEECC-CCcEEEEEECCCccccccCCCccceEECCCC--------------CEEEEEecCCCCeEEEEE-C-CCCEEeE
Confidence 999984 44444444221 1223478888888 56666653 57899999 4 4455555
Q ss_pred -EccccccEeEEEEecCC-CEEEEEEcCCeEEEEECCCCceEEEEe-----cC-Cce-EEEEEecCCCeeee--------
Q psy307 432 -YYGHRQAVRDICFNNTG-TNFISAGYDRYLKLWDTESGECISRFT-----SR-KVA-YCVKFHPDEDKQHL-------- 494 (1019)
Q Consensus 432 -l~~H~~~V~sl~fspdg-~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----~~-~~v-~~v~~~p~~~~~~~-------- 494 (1019)
+... + ++.+.|++ +.+++.+.||.+.++|. +++...... .. ..+ ....+.+++....+
T Consensus 163 ~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~ 237 (373)
T 2mad_H 163 LLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKIL 237 (373)
T ss_pred EcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEE
Confidence 4321 2 23455665 45677888999999999 887764332 11 110 11233333322211
Q ss_pred --ccCCCc-e---eeeC---------CCCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCcccccceeEE
Q psy307 495 --DIPVDM-K---YIAD---------PTMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKKTF 549 (1019)
Q Consensus 495 --~~~~~~-~---~i~~---------~~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~l 549 (1019)
+..... . .+.. ........+.++|+++.+.+... ++.|.++|+.+... +..+
T Consensus 238 vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v---v~~i 314 (373)
T 2mad_H 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQI 314 (373)
T ss_pred EEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE---EEEE
Confidence 111100 0 0000 00111223788999988877653 35899999987633 3444
Q ss_pred eccccccceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeee
Q psy307 550 EGHMVAGYACSLDFSPDMS-YLISGD-ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 550 ~gh~~~~~V~~v~fspdg~-~Lasgs-~DG~I~IWDl~t~~~l~~l 593 (1019)
... ....+++|+|||+ +++++. .++.|.+||..+++.+.++
T Consensus 315 ~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 315 SLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 322 3467899999999 777777 5899999999999998884
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.07 E-value=8.7e-08 Score=108.45 Aligned_cols=279 Identities=10% Similarity=-0.029 Sum_probs=168.4
Q ss_pred CCCCCCCeeeeCCC-----CCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CC
Q psy307 293 PTDYQGRSFLHPPH-----DVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MD 357 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~-----D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~D 357 (1019)
...++|+.+..... ++.|.+.+.. ..+.+.++..-..+ . ++++|+ ++.+++++ .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~-------t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE-------AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT-------TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC-------CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCC
Confidence 34577776655543 4567776654 23556666654445 4 999997 55555543 46
Q ss_pred CeEEEEecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeE
Q psy307 358 CRVKLWEVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRC 428 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~ 428 (1019)
+.|.+||.. +.+.+.++.-. ...-..+.|+||| ++++++.. ++.|.++|+ ...+.
T Consensus 109 ~~VsviD~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG--------------k~lyVan~~~~~~VsVID~-~t~~v 172 (386)
T 3sjl_D 109 DYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDG--------------KTLLFYQFSPAPAVGVVDL-EGKAF 172 (386)
T ss_dssp EEEEEECTT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTS--------------SEEEEEECSSSCEEEEEET-TTTEE
T ss_pred CEEEEEECC-CCeEEEEEECCCccccccCCCCceEEEcCCC--------------CEEEEEEcCCCCeEEEEEC-CCCcE
Confidence 889999994 45556555321 1235578899998 46666553 689999999 56666
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCC-CceEEEEecC-----CceE-EEEEe-cCCCeeeeccCCCc
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES-GECISRFTSR-----KVAY-CVKFH-PDEDKQHLDIPVDM 500 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t-~~~i~~~~~~-----~~v~-~v~~~-p~~~~~~~~~~~~~ 500 (1019)
+..+.... . ...+....+.+++.+.||++.+.++.+ ++........ ..+. ...|. +++...+... ...
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~ 248 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGK 248 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSE
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCE
Confidence 66664321 1 123433456788889999999999976 6653322111 1110 12332 3332211111 111
Q ss_pred eeeeCC-----------------------CCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCccccccee
Q psy307 501 KYIADP-----------------------TMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKK 547 (1019)
Q Consensus 501 ~~i~~~-----------------------~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~ 547 (1019)
.++.+. .......++++++++.++.... .+.|.++|+.+...+ .
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---A 325 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---E
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE---E
Confidence 111111 0123345888999988887653 257999999987544 3
Q ss_pred EEeccccccceEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCC
Q psy307 548 TFEGHMVAGYACSLDFSPDMS-YLISG-DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPH 608 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fspdg~-~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~ 608 (1019)
.+.-. ..+.++++++|++ +|+++ ..++.|.++|..+++.+.++..-. .-+.+.+++|
T Consensus 326 ~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 326 KFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp EEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred EEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence 33221 2367899999997 66665 458999999999999999987432 2245555554
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.06 E-value=5.6e-09 Score=129.25 Aligned_cols=244 Identities=12% Similarity=0.032 Sum_probs=152.2
Q ss_pred CCCCCCCCeee-----eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCe-------
Q psy307 292 DPTDYQGRSFL-----HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCR------- 359 (1019)
Q Consensus 292 ~~~~~~gr~~~-----~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~------- 359 (1019)
..++++|+.++ .++.+..|.+|+...... +. ...+.+. ....++|+|| ++.|+.++.|..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~--~~---~~~~~~~--~~~~~~wspD-g~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW--SK---VDVIEGG--KYATPKWTPD-SKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB--CS---SCCBSCC--TTCCCEECTT-SSEEEEEECCCCTTSCGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECCCCCC--cC---CcccCcc--cccceEEecC-CCEEEEEEecCCCCCcccc
Confidence 45789999998 666678999998875432 10 0012211 1267999997 677777777765
Q ss_pred ------EEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC----cEEEEEccCCC
Q psy307 360 ------VKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKEH 426 (1019)
Q Consensus 360 ------I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg----~I~IWDl~~~~ 426 (1019)
|++|++.+.. .++....+|...+..+.|+|||. +|+.++.++ .|.+|+.. ++
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--------------~l~~~~~~~~~~~~l~~~~~~-~~ 262 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--------------YLFVYILRGWSENDVYWKRPG-EK 262 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--------------CEEEEEEETTTEEEEEEECTT-CS
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--------------EEEEEEeCCCCceEEEEEcCC-CC
Confidence 9999996443 34444455667788899999984 455444444 56666542 22
Q ss_pred eEEEEEccccccEeEEEEecCCCEEEEEEc----CCeEEEEECCCCce---EEEEecCCceEEEEEecCCCeeeeccCCC
Q psy307 427 RCVRTYYGHRQAVRDICFNNTGTNFISAGY----DRYLKLWDTESGEC---ISRFTSRKVAYCVKFHPDEDKQHLDIPVD 499 (1019)
Q Consensus 427 ~~~~~l~~H~~~V~sl~fspdg~~l~S~s~----Dg~I~lWDl~t~~~---i~~~~~~~~v~~v~~~p~~~~~~~~~~~~ 499 (1019)
....+..+...+....+ ++|. |+..+. ++.|.+||+.++.. ...+...
T Consensus 263 -~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------------------- 317 (695)
T 2bkl_A 263 -DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---------------------- 317 (695)
T ss_dssp -SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC----------------------
T ss_pred -ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC----------------------
Confidence 34445555556666666 5666 555443 57899999977642 2111111
Q ss_pred ceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEcc-CcccccceeEEeccccccceEEEEEcCCCCEEEEE----e
Q psy307 500 MKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSAL-NRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG----D 574 (1019)
Q Consensus 500 ~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~-~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg----s 574 (1019)
....+..++++ ++.++++...|+..++|.+. ++. ....+..+. .+.+..++++|+++.++.. .
T Consensus 318 -------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 318 -------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK---PVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp -------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC---EEEECCCSS-SSEECCCBSCTTCSEEEEEEEETT
T ss_pred -------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC---eeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCC
Confidence 01234456666 67788888999988888665 221 223333331 2557778899999877633 3
Q ss_pred CCCeEEEEeCCCCceeeeeecc
Q psy307 575 ADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 575 ~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
..++|++||+.+++. ..++.+
T Consensus 386 ~P~~v~~~d~~~g~~-~~l~~~ 406 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKS-ELWAKV 406 (695)
T ss_dssp EEEEEEEEETTTCCE-EEEEEC
T ss_pred CCCEEEEEECCCCcE-EEEecC
Confidence 357899999998873 344433
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.05 E-value=6.9e-08 Score=111.13 Aligned_cols=258 Identities=8% Similarity=-0.068 Sum_probs=167.9
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCCCe
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKEHR 427 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~~~ 427 (1019)
+.|.+.|. ...+.+.++..-..+ .+.++|||. .|+++. .++.|.++|.. +.+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk--------------~lyVan~~~~~~~~G~~~~~VsviD~~-t~~ 160 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGS--------------FFAQASTVFERIARGKRTDYVEVFDPV-TFL 160 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSS--------------CEEEEEEEEEETTEEEEEEEEEEECTT-TCC
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCC--------------EEEEEeccccccccCCCCCEEEEEECC-CCc
Confidence 79999999 556677777654555 899999995 333333 47799999994 445
Q ss_pred EEEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCc--------eEEEEEecCCC
Q psy307 428 CVRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKV--------AYCVKFHPDED 490 (1019)
Q Consensus 428 ~~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~--------v~~v~~~p~~~ 490 (1019)
.+..+.-. ......+.|+|||++++.+.. ++.|.+.|+.+++.+.++..... ...+.+++++.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSS
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCC
Confidence 55544311 123456799999999998875 57899999999999988876432 12366778887
Q ss_pred eeeeccCCCcee-----eeCCCCCc-ccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec---cc-----ccc
Q psy307 491 KQHLDIPVDMKY-----IADPTMHS-MPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG---HM-----VAG 556 (1019)
Q Consensus 491 ~~~~~~~~~~~~-----i~~~~~~~-i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g---h~-----~~~ 556 (1019)
...++....... ........ ...+.+.+++..++..+..+.|.+.|...... .....+.- .. ...
T Consensus 241 ~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 241 LARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp EEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEEC
T ss_pred EEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeeccccccccccccC
Confidence 766655221111 11111111 12456789988888888889999999865321 11111110 00 001
Q ss_pred ceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEEEE
Q psy307 557 YACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATAKV 625 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~iw 625 (1019)
....++++|||+.++.... ++.|.++|..+.+.+.++.... ...++.|+|++..+++++. .++.|.+
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsV- 397 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHI- 397 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEE-
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEE-
Confidence 1113689999987766542 3579999999999999987533 4789999999853666666 5788855
Q ss_pred eccceeeeeee
Q psy307 626 QDANIVKIAVE 636 (1019)
Q Consensus 626 wd~~i~ki~~e 636 (1019)
.|....++...
T Consensus 398 ID~~t~kvv~t 408 (426)
T 3c75_H 398 YDAATGEELRS 408 (426)
T ss_dssp EETTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 45555555433
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=6.4e-09 Score=118.19 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=124.6
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc----------EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER----------RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~----------~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
.++.+++++. ..++++|+.++ +++|++..-. .... ...+.+ |+.++| ++ .
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~--------------~ 98 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG--------------D 98 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET--------------T
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC--------------C
Confidence 6888999996 67888888875 5559863211 1111 223555 888888 65 5
Q ss_pred EEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 407 LLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 407 ~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+|+++ .++.|++||+.... .......|...|.++.+.+. .+++++.||.|.+||+.++.... +
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~------------ 161 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L------------ 161 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E------------
T ss_pred EEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c------------
Confidence 78887 88999999996554 34456677788888877654 39999999999999999877542 1
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE------e---ccccccc
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF------E---GHMVAGY 557 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l------~---gh~~~~~ 557 (1019)
...|.+++|||+| ++.|..||+|++|+...... ....++ . +|. ..
T Consensus 162 ---------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~--~~ 215 (388)
T 1xip_A 162 ---------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEE--YS 215 (388)
T ss_dssp ---------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTT--SE
T ss_pred ---------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCC--ee
Confidence 1246678888899 67899999999998876521 102334 2 233 67
Q ss_pred eEEEEEcCCCCEEEE
Q psy307 558 ACSLDFSPDMSYLIS 572 (1019)
Q Consensus 558 V~~v~fspdg~~Las 572 (1019)
|.++.|.+++.++++
T Consensus 216 V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 216 PLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEESSSSEEEEE
T ss_pred EEEEEEecCCeEEEE
Confidence 999999999999887
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=6.8e-08 Score=108.59 Aligned_cols=262 Identities=11% Similarity=0.030 Sum_probs=156.7
Q ss_pred CCeEEEEEcCCCCcEEEEee--CCCeEEEEecCCCcEEEEEec-------ccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 336 KGISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKERRCVRTYY-------GHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs--~Dg~I~IWdl~~~~~~~~~~~-------gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
..+..|+++|+ ++++++.. .++.++||.+. .++. ..+. +|-..+..++++++| .
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g--------------~ 79 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNG--------------I 79 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSS--------------E
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCC--------------c
Confidence 67899999996 77888754 23447777764 4432 2222 344567888888777 4
Q ss_pred EEEEEeC-----CCcEEEEEccCCCeEEEEEcc------ccccEeEEEEecCCCE-EEEEE---cCCeEEEEECCCCceE
Q psy307 407 LLLSCSM-----DCRVKLWEVYKEHRCVRTYYG------HRQAVRDICFNNTGTN-FISAG---YDRYLKLWDTESGECI 471 (1019)
Q Consensus 407 ~L~sgs~-----Dg~I~IWDl~~~~~~~~~l~~------H~~~V~sl~fspdg~~-l~S~s---~Dg~I~lWDl~t~~~i 471 (1019)
++++-.. ++.|.+||+ .+++.+..+.. +...+..+++++++.. +++.+ .++.|.+||+.+++..
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~-~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDT-LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEET-TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred EEEEcCCCCcCCCCeEEEEEC-CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 4444433 578999998 45555555432 2345689999986555 45555 6789999999998876
Q ss_pred EEEecCCce--EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC-eEEEEEccCcc--c----
Q psy307 472 SRFTSRKVA--YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN-KILIFSALNRF--K---- 542 (1019)
Q Consensus 472 ~~~~~~~~v--~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg-~I~iwd~~~~~--~---- 542 (1019)
..+..+... ....+.+++.............. -...+..++++|+|+.|+.+..++ .|..++..... .
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~---~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIR---PHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEEC---CCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceec---eecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 665432110 00222222221110000000000 012356799999999888887766 55555542100 0
Q ss_pred --ccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCC
Q psy307 543 --LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWD 619 (1019)
Q Consensus 543 --~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~D 619 (1019)
...+ ...++. +....++++++|.++++...++.|.+||..+++....... +-..+.++++.+++ .++++.+..
T Consensus 236 ~~~~~~-~~~g~~--g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~ 311 (343)
T 2qe8_A 236 ELGSKI-ERYSEK--PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQL 311 (343)
T ss_dssp HHHTTC-EEEEEC--CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECCG
T ss_pred hhhcce-EecccC--CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCcc
Confidence 0001 111222 3455789999999999998999999999866664333322 23468899999886 566666644
Q ss_pred CcE
Q psy307 620 AAT 622 (1019)
Q Consensus 620 g~I 622 (1019)
+.+
T Consensus 312 ~~~ 314 (343)
T 2qe8_A 312 HHS 314 (343)
T ss_dssp GGS
T ss_pred ccc
Confidence 443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.00 E-value=5.1e-09 Score=119.00 Aligned_cols=172 Identities=13% Similarity=0.080 Sum_probs=120.9
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC----------eEEEEEccccccEeEEEEecCCCE
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH----------RCVRTYYGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~----------~~~~~l~~H~~~V~sl~fspdg~~ 450 (1019)
++..+++++.. .++++|+.++ +.+|++..-. ... ....+.. |..++| ++++
T Consensus 39 ~~nlLais~~~--------------gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~ 99 (388)
T 1xip_A 39 SLQNLDISNSK--------------SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQ 99 (388)
T ss_dssp CCBCEEEETTT--------------TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTE
T ss_pred cccEEEEcCCC--------------CEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCE
Confidence 57888888877 6888888875 5559874221 111 1223566 999999 8889
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCC
Q psy307 451 FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDN 530 (1019)
Q Consensus 451 l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg 530 (1019)
|+++ .++.|++||+.+........... ..+..+.+.+. .+++++.||
T Consensus 100 L~v~-~~~~l~v~dv~sl~~~~~~~~~~------------------------------~~v~~i~~~~p--~~av~~~dG 146 (388)
T 1xip_A 100 VLVS-TRNALYSLDLEELSEFRTVTSFE------------------------------KPVFQLKNVNN--TLVILNSVN 146 (388)
T ss_dssp EEEE-ESSEEEEEESSSTTCEEEEEECS------------------------------SCEEEEEECSS--EEEEEETTS
T ss_pred EEEE-cCCcEEEEEchhhhccCccceee------------------------------cceeeEEecCC--CEEEEECCC
Confidence 8888 88999999998765443332211 01122222222 288889999
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeee------e---ccCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL--FKKW------K---AHDGV 599 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~--l~~l------~---~h~~~ 599 (1019)
.|.+||+.++... . +. ..|++++|||+| ++.|..||++++|+...+.. ..++ . +|...
T Consensus 147 ~L~v~dl~~~~~~---~----~~--~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 147 DLSALDLRTKSTK---Q----LA--QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp EEEEEETTTCCEE---E----EE--ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred CEEEEEccCCccc---c----cc--CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence 9999999865321 1 11 459999999999 67899999999999887775 5556 2 37788
Q ss_pred EEEEEEcCCCCcEEEEE
Q psy307 600 CISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 600 V~sl~~sp~~~~~l~s~ 616 (1019)
|.++.|.+++ .++++-
T Consensus 216 V~sI~wl~~~-~flv~y 231 (388)
T 1xip_A 216 PLSVTILSPQ-DFLAVF 231 (388)
T ss_dssp EEEEEESSSS-EEEEEE
T ss_pred EEEEEEecCC-eEEEEE
Confidence 9999999987 456553
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.97 E-value=8.2e-07 Score=96.31 Aligned_cols=258 Identities=7% Similarity=-0.034 Sum_probs=165.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+.+|+.++....++.|..++.. ... . ...+..+...+.++++.++ +.++++...++.|..||.. ......
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-~~~-----~-~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-GRI-----K-EFEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCE-----E-EEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-Cce-----E-EEECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CCeEEe
Confidence 46678988888777888888654 111 0 1122344567999999985 6777777678999999985 332222
Q ss_pred EecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE
Q psy307 374 TYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 374 ~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S 453 (1019)
........+.++++.++| .++++...++.|..||.. .......+......+.++++.++|+.+++
T Consensus 98 ~~~~~~~~~~~i~~~~~g--------------~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNG--------------DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp ECSSTTCCEEEEEECSTT--------------CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred cCCCCCCCCccceECCCC--------------CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence 223334567888888777 566666668899999984 32222233334567899999999996666
Q ss_pred EEcCCeEEEEECCCCceEEEEec---CCceEEEEEecCCCeeeeccCCC----------ceee-eCCCCCcccEEEEcCC
Q psy307 454 AGYDRYLKLWDTESGECISRFTS---RKVAYCVKFHPDEDKQHLDIPVD----------MKYI-ADPTMHSMPAVTSSPN 519 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~---~~~v~~v~~~p~~~~~~~~~~~~----------~~~i-~~~~~~~i~~v~~spd 519 (1019)
...++.|..+|. +++... +.. ...+..+.+.+++...+...... .... .......+.+++++++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECST
T ss_pred ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCC
Confidence 666789999998 565543 322 24578888988775443322111 1111 1112344678999999
Q ss_pred CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 520 NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 520 g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
|+++++...++.|..|+.... . ..+........+.+++++++|.+.++.. . .|..+|.
T Consensus 241 g~l~v~~~~~~~i~~~~~~g~--~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITNDNT--I---QEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCEEEEETTTTEEEEECTTSC--E---EEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCEEEeccCCCeEEEECCCCc--E---EEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 987777667799999998422 1 1222111124477899999998666655 4 6777765
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.96 E-value=1.4e-07 Score=103.53 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=147.5
Q ss_pred CCCCCCeeee-------CCCCCceeeecCCCCCCccCCccceeee-----ccCCCCeEEEEEcCCCCcEEEEeeCCCeEE
Q psy307 294 TDYQGRSFLH-------PPHDVGTNLRSDTPPDRCFLPKTQVHTW-----EGHTKGISAIRWFPKSAHLLLSCSMDCRVK 361 (1019)
Q Consensus 294 ~~~~gr~~~~-------~~~D~~v~lw~~~~~~~~~lp~~~i~~l-----~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~ 361 (1019)
++.+|+.+++ ...++.|..|+..... +..+ .++...+.+++++++++.++++.. .+.|.
T Consensus 25 ~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK--------KTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCC--------EEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred ECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc--------EEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 5678888888 6677888888743221 1122 235678999999996355555444 45788
Q ss_pred EEecCCCcEEEEE-ecc----cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC---------------CcEEEEE
Q psy307 362 LWEVYKERRCVRT-YYG----HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD---------------CRVKLWE 421 (1019)
Q Consensus 362 IWdl~~~~~~~~~-~~g----h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D---------------g~I~IWD 421 (1019)
+||.. ++.... ... ....+.+++++++| .++++...+ +.|..||
T Consensus 96 ~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g--------------~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 96 VVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEG--------------NLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEETT--SCEEECCSBCTTSCBCBCCCEEEECTTS--------------CEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEeCC--CCEEEEEeccCCCccccCCcCEEECCCC--------------CEEEEecCcccccccccccccCCCCeEEEEC
Confidence 99985 333322 211 12347788888887 455555544 4566666
Q ss_pred ccCCCeEEEEEccccccEeEEEEe----cCCCEEEEE-EcCCeEEEEECC-CCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 422 VYKEHRCVRTYYGHRQAVRDICFN----NTGTNFISA-GYDRYLKLWDTE-SGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 422 l~~~~~~~~~l~~H~~~V~sl~fs----pdg~~l~S~-s~Dg~I~lWDl~-t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
.. +.... +..+......++|+ ++++.++.+ +.++.|.+||+. ++..... . .+.-.+
T Consensus 160 ~~--g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-~------~~~~~~-------- 221 (314)
T 1pjx_A 160 TD--GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-K------VWGHIP-------- 221 (314)
T ss_dssp TT--SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-E------EEEECC--------
T ss_pred CC--CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-e------EEEECC--------
Confidence 53 43332 23344556889999 999765555 467899999975 3332110 0 000000
Q ss_pred cCCCceeeeCCCC-CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE-EE
Q psy307 496 IPVDMKYIADPTM-HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SG 573 (1019)
Q Consensus 496 ~~~~~~~i~~~~~-~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sg 573 (1019)
... .....++++++|+++++...++.|.+||..++.. ...+..+. ..+.+++|+|+|++|+ +.
T Consensus 222 ----------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~--~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 222 ----------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPF--EKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ----------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSS--SCEEEEEECTTSSEEEEEE
T ss_pred ----------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE---eEEEeCCC--CCceeEEECCCCCEEEEEe
Confidence 011 2345688899999888888899999999875432 23344333 5688999999999554 45
Q ss_pred eCCCeEEEEeCCC
Q psy307 574 DADGKCYIWDWKT 586 (1019)
Q Consensus 574 s~DG~I~IWDl~t 586 (1019)
..++.|..|++..
T Consensus 287 ~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 287 HENNAVWKFEWQR 299 (314)
T ss_dssp TTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCC
Confidence 5668899999865
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.89 E-value=1.2e-07 Score=117.12 Aligned_cols=240 Identities=10% Similarity=0.025 Sum_probs=142.4
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEe----eCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 332 EGHTKGISAIRWFPKSAHLLLSC----SMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 332 ~gH~~~V~~i~fspd~g~lLaSg----s~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+|...+..++||||+..++++. +.+..|++||+.++......+.+. ....++|+ ||+ .
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~--------------~ 187 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNE--------------G 187 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTT--------------E
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCC--------------E
Confidence 35667899999999744444443 333579999995544222222211 12466788 774 4
Q ss_pred EEEEeCC-------------CcEEEEEccCCC---eEEEEEcc-ccccEeEEEEecCCCEEEEEEc----CCeEEEEECC
Q psy307 408 LLSCSMD-------------CRVKLWEVYKEH---RCVRTYYG-HRQAVRDICFNNTGTNFISAGY----DRYLKLWDTE 466 (1019)
Q Consensus 408 L~sgs~D-------------g~I~IWDl~~~~---~~~~~l~~-H~~~V~sl~fspdg~~l~S~s~----Dg~I~lWDl~ 466 (1019)
|+.++.+ ..|++|++.+.. .++..... |...+.++.|+|||++|+..+. +..|.+||+.
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 5555444 349999985543 23433444 5666788999999998754443 2479999987
Q ss_pred CCc-eEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec----CCeEEEEEccCcc
Q psy307 467 SGE-CISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM----DNKILIFSALNRF 541 (1019)
Q Consensus 467 t~~-~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~----Dg~I~iwd~~~~~ 541 (1019)
++. ....+..+. ...... ++++|..|+..+. .+.|..+++.++.
T Consensus 268 ~~~~~~~~l~~~~------------------------------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 268 QENAPLLTVQGDL------------------------------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp STTCCCEEEECSS------------------------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCCCceEEEeCCC------------------------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 763 222222111 111111 4455555554443 3589999988653
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCceeeeee-ccCCCEEEEEEcCCCCcEEEEEe
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DG--KCYIWDWKTTKLFKKWK-AHDGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG--~I~IWDl~t~~~l~~l~-~h~~~V~sl~~sp~~~~~l~s~s 617 (1019)
. .....+..+.. .+. .|++++++|+.... +| .|++||+..+ ....+. .+.+.+..+.+++++..++++.+
T Consensus 317 ~-~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 317 P-AHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFE 390 (693)
T ss_dssp G-GGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred c-cccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEec
Confidence 2 12234555542 233 88999998876655 43 6899998754 344443 24456778888888865555554
Q ss_pred CC---CcEEEE
Q psy307 618 WD---AATAKV 625 (1019)
Q Consensus 618 ~D---g~I~iw 625 (1019)
.. +++..+
T Consensus 391 s~~tP~~l~~~ 401 (693)
T 3iuj_A 391 NYAQPPTLYRF 401 (693)
T ss_dssp CSSSCCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 32 555443
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.88 E-value=1.2e-07 Score=118.11 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=121.9
Q ss_pred cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCC----cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 378 HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDC----RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 378 h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg----~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
|...+..++|||||. +|+.+ +.+| .|++||+..+ ..+.. ..+...+..++|+|| +.|+
T Consensus 161 ~~~~~~~~~~SPDG~--------------~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~~l~ 223 (741)
T 1yr2_A 161 GATALDAWAASDDGR--------------LLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-DALL 223 (741)
T ss_dssp --EEEEEEEECTTSS--------------EEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-SEEE
T ss_pred CCEEEEeEEECCCCC--------------EEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-CEEE
Confidence 334677788888884 44443 3333 5999999544 43332 112222357799999 9999
Q ss_pred EEEcCCe--------------EEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 453 SAGYDRY--------------LKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 453 S~s~Dg~--------------I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
.++.|+. |.+|++.++.. ...+.. ..+...+..+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~----------------------------~~~~~~~~~~~~ 275 (741)
T 1yr2_A 224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT----------------------------PELPKRGHGASV 275 (741)
T ss_dssp EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC----------------------------TTCTTCEEEEEE
T ss_pred EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc----------------------------CCCCeEEEEEEE
Confidence 8887664 77888766542 111110 001123567889
Q ss_pred cCCCCEEEEEecCC-----eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC
Q psy307 517 SPNNKWLACQSMDN-----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA----DGKCYIWDWKTT 587 (1019)
Q Consensus 517 spdg~~Lasgs~Dg-----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~----DG~I~IWDl~t~ 587 (1019)
+|||++|+..+.++ .|.+||+.++.. .....+..+. ..+... ++|+|+.|+..+. ++.|.+||+.++
T Consensus 276 SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~--~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 276 SSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDL--KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp CTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSS--SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred CCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCC--CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999998887554 899999876511 1023444443 223333 3589998887765 346999999885
Q ss_pred --ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 --KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 --~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.....+..+...+.++.|+ ++.++++...||...+|
T Consensus 352 ~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEE
T ss_pred ccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEE
Confidence 3333444555567778887 33688899999887665
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.88 E-value=5.6e-07 Score=103.57 Aligned_cols=250 Identities=10% Similarity=-0.034 Sum_probs=152.7
Q ss_pred CceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEEecCCCcEEEEEecc
Q psy307 308 VGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKERRCVRTYYG 377 (1019)
Q Consensus 308 ~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IWdl~~~~~~~~~~~g 377 (1019)
+.|.+.+.. ..+.+.++.--..+ .++++|| ++.|+++. .++.|.++|.. ..+.+..+.-
T Consensus 99 ~~VsVID~~-------t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGS-------TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIEL 167 (426)
T ss_dssp EEEEEEETT-------TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEE
T ss_pred CeEEEEECC-------CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEEC
Confidence 577777654 23456666544445 8999997 55555544 47899999994 4455555431
Q ss_pred c-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEEEccccccEeEEEEecCC
Q psy307 378 H-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 378 h-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
. ......+.|+||| ++|+.+.. ++.|.+.|+ ...+.+..+.--.. ....|++
T Consensus 168 ~g~~r~~~g~~P~~~~~spDG--------------k~lyV~n~~~~~~VsVID~-~t~kvv~~I~v~g~----~~~~p~g 228 (426)
T 3c75_H 168 PDAPRFLVGTYQWMNALTPDN--------------KNLLFYQFSPAPAVGVVDL-EGKTFDRMLDVPDC----YHIFPAS 228 (426)
T ss_dssp TTCCCCCBSCCGGGSEECTTS--------------SEEEEEECSSSCEEEEEET-TTTEEEEEEECCSE----EEEEEEE
T ss_pred CCccccccCCCcceEEEcCCC--------------CEEEEEecCCCCeEEEEEC-CCCeEEEEEEcCCc----eeeccCC
Confidence 1 1234578888888 56666653 688999999 55566655543211 2334443
Q ss_pred -CEEEEEEcCCeEEEEECCCCceEEEE----ecCCce--EEEEEecCCCeeeeccCCCceeeeCC---------------
Q psy307 449 -TNFISAGYDRYLKLWDTESGECISRF----TSRKVA--YCVKFHPDEDKQHLDIPVDMKYIADP--------------- 506 (1019)
Q Consensus 449 -~~l~S~s~Dg~I~lWDl~t~~~i~~~----~~~~~v--~~v~~~p~~~~~~~~~~~~~~~i~~~--------------- 506 (1019)
+.+++.+.||++.+.+..+++..... .....+ ..+.+.+++....+.......++.+.
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 55677788888888888666655321 111111 12234444443322111111111100
Q ss_pred --------CCCcccEEEEcCCCCEEEEEec----------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 507 --------TMHSMPAVTSSPNNKWLACQSM----------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 507 --------~~~~i~~v~~spdg~~Lasgs~----------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
.......++++|+++.+++... ++.|.++|+.+...+ ..+... ....++.|+|||+
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~vg---~~P~gia~spDg~ 382 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIELG---HEIDSINVSQDAE 382 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEE---EEECEEEECCSSS
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEECC---CCcCeEEEccCCC
Confidence 0111223789999887776642 358999999887544 333321 2367899999999
Q ss_pred -EEEEEe-CCCeEEEEeCCCCceeeee
Q psy307 569 -YLISGD-ADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 569 -~Lasgs-~DG~I~IWDl~t~~~l~~l 593 (1019)
++++.. .++.|.|+|..+++.+.++
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 888887 5899999999999999987
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.84 E-value=4.8e-07 Score=102.32 Aligned_cols=251 Identities=8% Similarity=-0.140 Sum_probs=155.5
Q ss_pred eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe----------CCCcEEEEEccCCCeE
Q psy307 359 RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS----------MDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 359 ~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs----------~Dg~I~IWDl~~~~~~ 428 (1019)
+|.+.|. ...+.+.++..-..+ .+.++||+. .++++. .++.|.+||+ .+.+.
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~--------------~lyVan~~~~r~~~G~~~~~VsviD~-~T~~v 108 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGS--------------DFALASTSFARSAKGKRTDYVEVFDP-VTFLP 108 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSS--------------CEEEEEEEETTTTSSSEEEEEEEECT-TTCCE
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCC--------------EEEEEcccccccccCCCCCEEEEEEC-CCCCE
Confidence 8889998 556777777655555 799999994 444443 4789999999 55566
Q ss_pred EEEEccc-------cccEeEEEEecCCCEEEEEEc--CCeEEE--EECCCCceEEEEecCCc--------eEEEEEecCC
Q psy307 429 VRTYYGH-------RQAVRDICFNNTGTNFISAGY--DRYLKL--WDTESGECISRFTSRKV--------AYCVKFHPDE 489 (1019)
Q Consensus 429 ~~~l~~H-------~~~V~sl~fspdg~~l~S~s~--Dg~I~l--WDl~t~~~i~~~~~~~~--------v~~v~~~p~~ 489 (1019)
+..+..+ ......++++|||++++.+.. +..|.+ +|+.+ +..+..... -.-+.+++++
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCC
Confidence 6666432 123557799999999998875 467888 99977 444433211 0123455565
Q ss_pred CeeeeccCC----CceeeeC----CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-------cc-
Q psy307 490 DKQHLDIPV----DMKYIAD----PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-------HM- 553 (1019)
Q Consensus 490 ~~~~~~~~~----~~~~i~~----~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-------h~- 553 (1019)
....++... ..+.... .....-+. . ++++..++..+. +.|.+.|+.+... .....+.- +.
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNF 261 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTE
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEecccccccccc
Confidence 555554443 2222110 00111122 3 666666666666 9999999864311 01111100 00
Q ss_pred cccceEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEe-CCCcEE
Q psy307 554 VAGYACSLDFSPDMSYLISGDA---------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAG-WDAATA 623 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~~Lasgs~---------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s-~Dg~I~ 623 (1019)
.......++++|||+.++.+.. ++.+.++|+.+.+.+..+.... ...+++|+|++..+++++. .++.|.
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence 0001112689999998876543 2356699999999999987654 5789999999966788888 588885
Q ss_pred EEeccceeeeeee
Q psy307 624 KVQDANIVKIAVE 636 (1019)
Q Consensus 624 iwwd~~i~ki~~e 636 (1019)
++ |....++...
T Consensus 341 VI-D~~t~kvv~~ 352 (368)
T 1mda_H 341 IY-DAASDQDQSS 352 (368)
T ss_dssp EE-ESSSCEEEEE
T ss_pred EE-ECCCCcEEEE
Confidence 54 5555555433
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=2.5e-09 Score=121.78 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=104.5
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..+++++.||.|..||. .+++.+..+.. ..+.+..+..++ .++++++.||.|+.||.. +++
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g--------------~~~v~~s~dg~l~a~d~~-tG~ 70 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEE--------------PAFLPDPNDGSLYTLGSK-NNE 70 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-------------------CCEEECTTTCCEEEC------C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCC--------------CEEEEeCCCCEEEEEECC-CCc
Confidence 568999999999999998 45566666654 344443333333 467777899999999984 344
Q ss_pred EEEEEccccc-cEe-EEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeC
Q psy307 428 CVRTYYGHRQ-AVR-DICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIAD 505 (1019)
Q Consensus 428 ~~~~l~~H~~-~V~-sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~ 505 (1019)
.+..+..+.. .+. +..+. ++..+++++.|+.|..||..+|+.+..+..+..
T Consensus 71 ~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-------------------------- 123 (369)
T 2hz6_A 71 GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-------------------------- 123 (369)
T ss_dssp CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--------------------------
Confidence 3333333211 111 01111 345678888999999999999998766653220
Q ss_pred CCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC---CEEEEEeCCCeEEEE
Q psy307 506 PTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM---SYLISGDADGKCYIW 582 (1019)
Q Consensus 506 ~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg---~~Lasgs~DG~I~IW 582 (1019)
..++|++..+++++.|+.|+.||..++....... ... .....+++++ ..+++++.||.|+.|
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-YFD------YAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEE-EEE------ECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-ccc------ccCccccCCccccceEEEECCCCEEEEE
Confidence 1224467888999999999999998875433222 111 1123344432 457778899999999
Q ss_pred eCCCCceeeeeec
Q psy307 583 DWKTTKLFKKWKA 595 (1019)
Q Consensus 583 Dl~t~~~l~~l~~ 595 (1019)
|..+|+.+.....
T Consensus 189 d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 189 DSESGDVLWIQNY 201 (369)
T ss_dssp CTTTCCEEEEEEC
T ss_pred ECCCCcEEEEecC
Confidence 9999998877663
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.78 E-value=2.1e-07 Score=105.22 Aligned_cols=266 Identities=9% Similarity=-0.091 Sum_probs=156.5
Q ss_pred CCeeeeCCCCC----ceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEee----------CCCeEEEE
Q psy307 298 GRSFLHPPHDV----GTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCS----------MDCRVKLW 363 (1019)
Q Consensus 298 gr~~~~~~~D~----~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs----------~Dg~I~IW 363 (1019)
.+.+++-..+. .|.+.+.. ..+.+.++..-..+ .+.++|+ +..++++. .++.|.+|
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~-------t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAG-------CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETT-------TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred CeEEEECCccCCccceEEEEECC-------CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEE
Confidence 45666655554 55566654 23566777555555 7999997 55555554 47899999
Q ss_pred ecCCCcEEEEEeccc-------CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEE--EEccCCCeEEEEE
Q psy307 364 EVYKERRCVRTYYGH-------RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKL--WEVYKEHRCVRTY 432 (1019)
Q Consensus 364 dl~~~~~~~~~~~gh-------~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~I--WDl~~~~~~~~~l 432 (1019)
|+ ...+.+.++.-. ......+.++||| ++++++.. +..|.+ +|+.+ +..+
T Consensus 102 D~-~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG--------------k~lyVan~~~~~~v~V~~iD~~t----v~~i 162 (368)
T 1mda_H 102 DP-VTFLPIADIELPDAPRFSVGPRVHIIGNCASS--------------ACLLFFLFGSSAAAGLSVPGASD----DQLT 162 (368)
T ss_dssp CT-TTCCEEEEEEETTSCSCCBSCCTTSEEECTTS--------------SCEEEEECSSSCEEEEEETTTEE----EEEE
T ss_pred EC-CCCCEEEEEECCCccccccCCCcceEEEcCCC--------------CEEEEEccCCCCeEEEEEEchhh----ceEE
Confidence 99 455666766432 1235678899998 45666653 467888 88854 2333
Q ss_pred ccccccEeEEEEecCCC-EEEEEEcCCeEEEEECCC-----CceEEE----EecCCceEEEEEecCCCeeeeccCCCcee
Q psy307 433 YGHRQAVRDICFNNTGT-NFISAGYDRYLKLWDTES-----GECISR----FTSRKVAYCVKFHPDEDKQHLDIPVDMKY 502 (1019)
Q Consensus 433 ~~H~~~V~sl~fspdg~-~l~S~s~Dg~I~lWDl~t-----~~~i~~----~~~~~~v~~v~~~p~~~~~~~~~~~~~~~ 502 (1019)
.. .+. +.+.|+++ .+++.+.|+.+.+.|+.+ ++.... +.....+. . .+++....+... ....
T Consensus 163 ~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~ 234 (368)
T 1mda_H 163 KS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSIL 234 (368)
T ss_dssp EC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCE
T ss_pred EC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEE
Confidence 21 111 12334443 456667788888888876 332211 11111222 2 333332211111 1111
Q ss_pred eeCC-----------------------CCCcccEEEEcCCCCEEEEEec---------CCeEEEEEccCcccccceeEEe
Q psy307 503 IADP-----------------------TMHSMPAVTSSPNNKWLACQSM---------DNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 503 i~~~-----------------------~~~~i~~v~~spdg~~Lasgs~---------Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
..+. .......++++|+++.++++.. ++.+.++|+.+...+..+.
T Consensus 235 viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~--- 311 (368)
T 1mda_H 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--- 311 (368)
T ss_dssp EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---
T ss_pred EEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE---
Confidence 1110 0011223789999998887643 2456799998875443322
Q ss_pred ccccccceEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 551 GHMVAGYACSLDFSPDMS-YLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~-~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
.. .....++|+|||+ .+++.. .++.|.++|+.+++.+.++.....+ .++++++
T Consensus 312 vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 312 NG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQN 366 (368)
T ss_dssp EE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECCC
T ss_pred CC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEeec
Confidence 21 2367899999998 455666 5899999999999999999866543 5666553
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.76 E-value=3.9e-06 Score=91.91 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=125.4
Q ss_pred CCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 391 GTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 391 g~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
+..+.-+..|+|..+.++++...++.|..||...... ..+ .+...+.+++++++|+++++ . ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3344456677777778888888999999999854332 222 24567999999999995544 4 67899999988764
Q ss_pred EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC---------CeEEEEEccCcc
Q psy307 471 ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD---------NKILIFSALNRF 541 (1019)
Q Consensus 471 i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D---------g~I~iwd~~~~~ 541 (1019)
........ ......+..++++|+|+++++...+ ....+|.+....
T Consensus 86 ~~~~~~~~--------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 86 VVLATVDN--------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp EEEEECCT--------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred EEEEecCC--------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 33222110 0011235568888899866654322 223444443221
Q ss_pred cccceeEEeccccccceEEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCce-----eeeeeccCCCEEEEEEcCCCCcEE
Q psy307 542 KLNRKKTFEGHMVAGYACSLDFSPDMSYLI-SGDADGKCYIWDW--KTTKL-----FKKWKAHDGVCISTLWHPHEPSKV 613 (1019)
Q Consensus 542 ~~~~~~~l~gh~~~~~V~~v~fspdg~~La-sgs~DG~I~IWDl--~t~~~-----l~~l~~h~~~V~sl~~sp~~~~~l 613 (1019)
.. ..+.... .....++|+|||+.|+ +.+.++.|.+||+ .++.+ +..+..+.+.+.++++.++| .+.
T Consensus 140 ~~---~~~~~~~--~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lw 213 (297)
T 3g4e_A 140 HV---KKYFDQV--DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLW 213 (297)
T ss_dssp CE---EEEEEEE--SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEE
T ss_pred CE---EEEeecc--ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEE
Confidence 11 1122221 3467899999998765 4556789999987 45543 22333445678899999998 566
Q ss_pred EEEeCCCcEEEEeccc
Q psy307 614 VTAGWDAATAKVQDAN 629 (1019)
Q Consensus 614 ~s~s~Dg~I~iwwd~~ 629 (1019)
++...++.|.+| +.+
T Consensus 214 va~~~~~~v~~~-d~~ 228 (297)
T 3g4e_A 214 VACYNGGRVIRL-DPV 228 (297)
T ss_dssp EEEETTTEEEEE-CTT
T ss_pred EEEcCCCEEEEE-cCC
Confidence 666666677554 544
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.73 E-value=4e-06 Score=95.56 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=141.3
Q ss_pred CCCCcEEEEeeCCCeEEEEecCCC---cEEEEEec------c-cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC-
Q psy307 345 PKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYY------G-HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM- 413 (1019)
Q Consensus 345 pd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~------g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~- 413 (1019)
++...++++|..++.|.|.|+... .+...++. . ....-..+..+|+| +++++..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---------------i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---------------IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---------------EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---------------EEEEcCCC
Confidence 665667778889999999998432 24555552 0 11234456667776 2333333
Q ss_pred -----CCcEEEEEccCCCeEEEEEccc--c-ccEeEEEEecCCCEEEEEE-------------------cCCeEEEEECC
Q psy307 414 -----DCRVKLWEVYKEHRCVRTYYGH--R-QAVRDICFNNTGTNFISAG-------------------YDRYLKLWDTE 466 (1019)
Q Consensus 414 -----Dg~I~IWDl~~~~~~~~~l~~H--~-~~V~sl~fspdg~~l~S~s-------------------~Dg~I~lWDl~ 466 (1019)
.|.|.+.|. .+.+.+..+... . .--..+.|+|+++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~-~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDH-YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECT-TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEEC-CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 378999998 556666666522 2 2234578899999888885 37899999999
Q ss_pred CCceEEEEecCC---ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe------cCCeEEEEEc
Q psy307 467 SGECISRFTSRK---VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS------MDNKILIFSA 537 (1019)
Q Consensus 467 t~~~i~~~~~~~---~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs------~Dg~I~iwd~ 537 (1019)
+++.+.++.... .+..+. ++++|+++++.+++ .+++|.+|..
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~-----------------------------f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELR-----------------------------PLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEE-----------------------------ECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred CCcEeeEEecCCCCCccceeE-----------------------------eeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 988888776541 222222 23477787777766 4568877665
Q ss_pred cCcccccceeEE--ecc-----c---------cccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCC---CceeeeeeccC
Q psy307 538 LNRFKLNRKKTF--EGH-----M---------VAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKT---TKLFKKWKAHD 597 (1019)
Q Consensus 538 ~~~~~~~~~~~l--~gh-----~---------~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t---~~~l~~l~~h~ 597 (1019)
..+ .....+.+ ... . ....+..|.+||||++|.++.. .+.|.+||+.. .+++..+....
T Consensus 288 d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG 366 (462)
T 2ece_A 288 EDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG 366 (462)
T ss_dssp ETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred cCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence 432 22222211 000 0 0134678999999999887765 67999999853 35555554321
Q ss_pred --------------CCEEEEEEcCCCCcEEEEE
Q psy307 598 --------------GVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 598 --------------~~V~sl~~sp~~~~~l~s~ 616 (1019)
+.-..++++|+|..++++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1247889999995444444
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.70 E-value=1.4e-06 Score=95.78 Aligned_cols=225 Identities=8% Similarity=-0.059 Sum_probs=137.6
Q ss_pred CCCCCCC-eeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEE
Q psy307 293 PTDYQGR-SFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRC 371 (1019)
Q Consensus 293 ~~~~~gr-~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~ 371 (1019)
.++++|+ .+++...++.+..|+... .+..+..+...+.+++++++ +.++++...++.|.+|+.......
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g---------~~~~~~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~~~~g~~~~ 120 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDG---------TVDVLLDATAFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQAHL 120 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTS---------CEEEEEESCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCC---------CEEEEeCCCCccceeeECCC-CCEEEEECCCCEEEEECCCCCEEE
Confidence 4567787 566776778888885431 13455667778999999996 676666666789999997422111
Q ss_pred EE-Eeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEE----EeC-------------CCcEEEEEccCCCeEEEEE
Q psy307 372 VR-TYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLS----CSM-------------DCRVKLWEVYKEHRCVRTY 432 (1019)
Q Consensus 372 ~~-~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s----gs~-------------Dg~I~IWDl~~~~~~~~~l 432 (1019)
+. ...+. ...+.++++.++| .++++ |.. .+.|..||.. ++......
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG--------------~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~~ 185 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDG--------------AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRMA 185 (305)
T ss_dssp EECEETTEECSCCCCEEECTTS--------------CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEEE
T ss_pred EEeccCCCccCCCCCEEECCCC--------------CEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEEe
Confidence 11 11111 1346778888888 45554 221 2456666652 23322222
Q ss_pred ccccccEeEEEEecCCCEEEEEEcC------CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCC
Q psy307 433 YGHRQAVRDICFNNTGTNFISAGYD------RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADP 506 (1019)
Q Consensus 433 ~~H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~ 506 (1019)
.......++|+|+++.|+.+... +.|.+||+..+. +.... .....
T Consensus 186 --~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~--------------------------~~~~~ 236 (305)
T 3dr2_A 186 --DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR--------------------------HFASV 236 (305)
T ss_dssp --EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE--------------------------EEECC
T ss_pred --cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe--------------------------EEEEC
Confidence 44567789999999988777665 689999886553 21100 00000
Q ss_pred CCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 507 TMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 507 ~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
.......++++++|++. +++. +.|.+|+.... ....+..+. .+.+++|+|+++.|..++.++..+
T Consensus 237 ~~~~pdgi~~d~~G~lw-v~~~-~gv~~~~~~g~----~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 237 PDGLPDGFCVDRGGWLW-SSSG-TGVCVFDSDGQ----LLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SSSCCCSEEECTTSCEE-ECCS-SEEEEECTTSC----EEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCCCeEEECCCCCEE-EecC-CcEEEECCCCC----EEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 11234568889999854 4444 45999998532 233443332 367899999999888887765433
No 224
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.70 E-value=2.6e-06 Score=98.12 Aligned_cols=245 Identities=9% Similarity=0.048 Sum_probs=148.6
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRC 371 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~ 371 (1019)
++.+|+.+++...+..|+.|+.... .+.++.+...... ++|+|+ +..|+++..++ .|.+|+......
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~-g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKD-KQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTT-SSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred EeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecC-CCcEEEEecCCCceEEEEEcCCCce-
Confidence 4577888888887888999876532 1222222233334 999996 66777777665 788888744332
Q ss_pred EEEe----cccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEE---EccccccE--eEE
Q psy307 372 VRTY----YGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRT---YYGHRQAV--RDI 442 (1019)
Q Consensus 372 ~~~~----~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---l~~H~~~V--~sl 442 (1019)
...+ ..+...+.+++++|++ ..|+.+..++.|+.||.......... ..++...- ..+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--------------g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--------------EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--------------SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--------------CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 2222 2144566778888743 24444677889999998544322211 22222222 389
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC
Q psy307 443 CFNNT-GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK 521 (1019)
Q Consensus 443 ~fspd-g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~ 521 (1019)
+|+|+ +..+++...++.|+.||.... +..+..... ..+ . ... ............++++|+|+
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~-------~~g------~-~dg-~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT-------QKT------V-QDG-LREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTT-------CCS------C-BCE-EGGGCBCSSEEEEEECTTCC
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC-------CCC------c-CCC-cccccEeCCCeEEEEeCCCC
Confidence 99995 555556566789999987643 222211100 000 0 000 00111123456899999999
Q ss_pred EEEEEe-cCCeEEEEEccCcccccceeEEeccc-------------cccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 522 WLACQS-MDNKILIFSALNRFKLNRKKTFEGHM-------------VAGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 522 ~Lasgs-~Dg~I~iwd~~~~~~~~~~~~l~gh~-------------~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
++++-+ .++.|+.|++.++. +.++.++. .-.....++++++|.++++-..+++|+.+++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 888887 88999999976542 23333330 0135789999999888888888888888765
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.64 E-value=3.2e-06 Score=104.17 Aligned_cols=209 Identities=12% Similarity=0.097 Sum_probs=121.6
Q ss_pred cEEEEEeCCC-------------------cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCCC---EEEEE
Q psy307 406 HLLLSCSMDC-------------------RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTGT---NFISA 454 (1019)
Q Consensus 406 ~~L~sgs~Dg-------------------~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg~---~l~S~ 454 (1019)
.+++.++.++ .|..||.. +++.+..+.. |. ..+.......+|+ .++.+
T Consensus 247 ~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 247 NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD-TGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc-CCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 5677777765 39999994 5555555543 32 1122222233565 68889
Q ss_pred EcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee----c--cCCCceeeeCC---CCCcccEEEEcCCCCEEEE
Q psy307 455 GYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL----D--IPVDMKYIADP---TMHSMPAVTSSPNNKWLAC 525 (1019)
Q Consensus 455 s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~----~--~~~~~~~i~~~---~~~~i~~v~~spdg~~Las 525 (1019)
+.+|.+.++|.++|+.+...........-.+.+....-+. . .+.....+..+ ....-..++++|+..++++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv 405 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYI 405 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEE
T ss_pred CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEE
Confidence 9999999999999999876654331111111110000000 0 00001111111 1112234677887777766
Q ss_pred Eec---------------------------------------------CCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 526 QSM---------------------------------------------DNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 526 gs~---------------------------------------------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
.+. +|.|..||+.++... -.+..+. ....
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~---~~~~ 479 (689)
T 1yiq_A 406 PAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA---WEVPYVT---IFNG 479 (689)
T ss_dssp EEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE---EEEEESS---SCCC
T ss_pred eccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE---eEccCCC---CccC
Confidence 532 378999999887443 2222221 1222
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCC-EEEEEEcCCCCcEEEEEeCCCc
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGV-CISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~-V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
..++..|.+|++|+.||.|+.||.++|+.+.+++...+. ..-+.|..+|..++++.+..|.
T Consensus 480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg 541 (689)
T 1yiq_A 480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGG 541 (689)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCT
T ss_pred ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCCc
Confidence 345557889999999999999999999999988755432 2346667788767766655443
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.63 E-value=1.4e-05 Score=88.79 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=117.6
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
+..|+|+.+.++++...++.|..||... +... .+ .+...+.+++|+++|+.+++. . ..|.+||..+++.......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~~-~~-~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLAS-GRKT-VH-ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTT-TEEE-EE-ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCC-CcEE-EE-ECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeC
Confidence 3445555557888888889999999843 3332 22 234679999999999876654 4 4599999988765322111
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec------CCeEEEEEccCcccccceeEEe
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM------DNKILIFSALNRFKLNRKKTFE 550 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~ 550 (1019)
.. ......+..++++|+|+++++... .+.|..++ ++ .. ..+.
T Consensus 128 ~~--------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~---~~~~ 175 (326)
T 2ghs_A 128 ES--------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KV---TKLF 175 (326)
T ss_dssp ST--------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EE---EEEE
T ss_pred CC--------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cE---EEee
Confidence 00 001123567888899987665442 24565565 32 11 1221
Q ss_pred ccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCC--CC-ce-----eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 551 GHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWK--TT-KL-----FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 551 gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~--t~-~~-----l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
... .....++|+|||+.|+.+ +.++.|.+||+. ++ .. +..+....+.+.++++.++| .++++...++.
T Consensus 176 ~~~--~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~ 252 (326)
T 2ghs_A 176 ADI--SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA 252 (326)
T ss_dssp EEE--SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE
T ss_pred CCC--cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCE
Confidence 211 346789999999876554 457899999986 56 32 22233344567889999988 45555555677
Q ss_pred EEEE
Q psy307 622 TAKV 625 (1019)
Q Consensus 622 I~iw 625 (1019)
|.+|
T Consensus 253 v~~~ 256 (326)
T 2ghs_A 253 VDRY 256 (326)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.61 E-value=1.8e-06 Score=106.67 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=144.2
Q ss_pred CCCCCCCeee-----eCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCC---------
Q psy307 293 PTDYQGRSFL-----HPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDC--------- 358 (1019)
Q Consensus 293 ~~~~~gr~~~-----~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg--------- 358 (1019)
.++++|+.++ .|..+..|.+|+...... + ..++.+. ....++|+ | ++.|+.++.+.
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~----~~~~~~~--k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--L----ETPLKDV--KFSGISWL-G-NEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--E----EEEEEEE--ESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCC--C----ccccCCc--eeccEEEe-C-CCEEEEEEecCccccccccc
Confidence 4788999888 444456788888764321 0 1112211 13567899 7 55566665553
Q ss_pred ----eEEEEecCCCc---EEEEEecc-cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccCCCe
Q psy307 359 ----RVKLWEVYKER---RCVRTYYG-HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYKEHR 427 (1019)
Q Consensus 359 ----~I~IWdl~~~~---~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~~~~ 427 (1019)
.|++|++.+.. .++..... |...+..+.|+|||. .++++.+. ++.|.+||+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~-------------~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR-------------FLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC-------------EEEEEEESSSSCCEEEEEETTSTTC
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC-------------EEEEEEccCCCCcEEEEEECCCCCC
Confidence 49999985443 34444444 555677888999885 23344332 35899999865544
Q ss_pred EEEEEccccccEeEEEEecCCCEEEEEEc-C---CeEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCce
Q psy307 428 CVRTYYGHRQAVRDICFNNTGTNFISAGY-D---RYLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK 501 (1019)
Q Consensus 428 ~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D---g~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~ 501 (1019)
....+..+....... |+++|..|+..+. + +.|..||+.++.. ...+..
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~------------------------- 325 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP------------------------- 325 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-------------------------
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-------------------------
Confidence 455566666665554 6677777665544 3 5788899877643 111111
Q ss_pred eeeCCCCCcccEEEEcCCCCEEEEEecCC---eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC--
Q psy307 502 YIADPTMHSMPAVTSSPNNKWLACQSMDN---KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-- 576 (1019)
Q Consensus 502 ~i~~~~~~~i~~v~~spdg~~Lasgs~Dg---~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-- 576 (1019)
+...+. .++++++.|+....++ .|++|++.++. ...+... ..+.+..+.+++++..|+....+
T Consensus 326 -----~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~ 393 (693)
T 3iuj_A 326 -----ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALP-GLGSVSGFNGKHDDPALYFGFENYA 393 (693)
T ss_dssp -----CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCS-SSSEEEECCCCTTCSCEEEEEECSS
T ss_pred -----CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecC-CCceEEeeecCCCCCEEEEEecCCC
Confidence 111122 6778888887766544 78899887542 1222211 12557778888988877665544
Q ss_pred --CeEEEEeCCCCce
Q psy307 577 --GKCYIWDWKTTKL 589 (1019)
Q Consensus 577 --G~I~IWDl~t~~~ 589 (1019)
++|+.||+.+++.
T Consensus 394 tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 394 QPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCCEEEEECTTTCCE
T ss_pred CCCEEEEEECCCCeE
Confidence 7899999988763
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.57 E-value=2.4e-05 Score=83.84 Aligned_cols=194 Identities=9% Similarity=-0.009 Sum_probs=128.5
Q ss_pred EeEEEEcCCCCceeEEEeecCCCCcEEEEEeC--CCcEEEEEccCCCeEEEEEcc-ccccEeEEEEecCCCEEEEEE-cC
Q psy307 382 VRDICFNNTGTNFISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKEHRCVRTYYG-HRQAVRDICFNNTGTNFISAG-YD 457 (1019)
Q Consensus 382 V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~fspdg~~l~S~s-~D 457 (1019)
...+.|++++ .+.++.+. ++.|.+.|+ .+++.+..+.- .......+++. +..++.+. .+
T Consensus 23 ~~Gl~~~~dg--------------~Lyvstg~~~~s~v~~iD~-~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYAEND--------------TLFESTGLYGRSSVRQVAL-QTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEECSTT--------------EEEEEECSTTTCEEEEEET-TTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred cccEEEeCCC--------------eEEEECCCCCCCEEEEEEC-CCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4677777665 44454443 689999999 45555555432 21222344554 55555544 57
Q ss_pred CeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEc
Q psy307 458 RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSA 537 (1019)
Q Consensus 458 g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~ 537 (1019)
+.+.++|..+.+.+.++... . |. ...++++|+.++++..+++|.++|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~-------~~------------------------g~glt~Dg~~l~vs~gs~~l~viD~ 133 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-M-------KD------------------------GWGLATDGKILYGSDGTSILYEIDP 133 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-S-------SS------------------------CCEEEECSSSEEEECSSSEEEEECT
T ss_pred CEEEEEECCCCcEEEEEECC-C-------CC------------------------eEEEEECCCEEEEECCCCeEEEEEC
Confidence 89999999999988877643 0 11 1224557777777777899999999
Q ss_pred cCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEE
Q psy307 538 LNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTL 604 (1019)
Q Consensus 538 ~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~ 604 (1019)
.+......+..-.....-..+..+.|. +|...+....++.|.+.|..+++.+..+... ....++++
T Consensus 134 ~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 134 HTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred CCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 876433322221111111236678888 7766666556789999999999999888642 13578999
Q ss_pred EcCCCCcEEEEEeCCCcEEEE
Q psy307 605 WHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 605 ~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|+|++..+++|+...+++..+
T Consensus 213 ~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 213 WDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EETTTTEEEEEETTCSEEEEE
T ss_pred EcCCCCEEEEECCCCCeEEEE
Confidence 999998888888888888665
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.56 E-value=4.6e-05 Score=86.07 Aligned_cols=247 Identities=10% Similarity=0.023 Sum_probs=139.9
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCe
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHR 427 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~ 427 (1019)
+..++.++.++.|..+|..+ ++.+................ ...++.++.++.|..+|.. +++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~p~~~----------------~~~v~v~~~~g~l~~~d~~-tG~ 164 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGEALSRPVVS----------------DGLVLIHTSNGQLQALNEA-DGA 164 (376)
T ss_dssp TTEEEEEETTSEEEEEETTT-CCEEEEEECSSCCCSCCEEE----------------TTEEEEECTTSEEEEEETT-TCC
T ss_pred CCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCceEcCCEEE----------------CCEEEEEcCCCeEEEEECC-CCc
Confidence 35677888999999999844 44454443332211111111 1478888999999999984 444
Q ss_pred EEEEEccccccE-----eEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCc---------------eE----EE
Q psy307 428 CVRTYYGHRQAV-----RDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKV---------------AY----CV 483 (1019)
Q Consensus 428 ~~~~l~~H~~~V-----~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~---------------v~----~v 483 (1019)
.+.......... ...... +..++.++.++.|..+|..+|+.+........ +. .+
T Consensus 165 ~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v 242 (376)
T 3q7m_A 165 VKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV 242 (376)
T ss_dssp EEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE
T ss_pred EEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE
Confidence 444443322111 112222 45678888899999999999998877654311 00 00
Q ss_pred E-EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 484 K-FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 484 ~-~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
- ...++....++...... .+.........+.. ++..+++++.++.|..+|..++... ....... ...+..+.
T Consensus 243 ~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~---w~~~~~~-~~~~~~~~ 315 (376)
T 3q7m_A 243 FALAYNGNLTALDLRSGQI-MWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL---WTQSDLL-HRLLTSPV 315 (376)
T ss_dssp EEECTTSCEEEEETTTCCE-EEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE---EEECTTT-TSCCCCCE
T ss_pred EEEecCcEEEEEECCCCcE-EeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE---EeecccC-CCcccCCE
Confidence 0 01122222222221111 11111122223332 4667888888999999999887433 2222110 01111222
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. .+..|+.++.+|.|+++|..+++.+.........+.+.....+ ..|+.++.+|.|..+
T Consensus 316 ~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~--~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 316 L--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD--GKLLIQAKDGTVYSI 374 (376)
T ss_dssp E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEET--TEEEEEBTTSCEEEE
T ss_pred E--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEEC--CEEEEEeCCCEEEEE
Confidence 2 3567888999999999999999998877654333322111123 368888889998665
No 230
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=1.9e-05 Score=83.75 Aligned_cols=176 Identities=9% Similarity=0.011 Sum_probs=116.2
Q ss_pred cEEEEEeCCC--cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMDC--RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.+..+++.+| .|+++|+ .+++.+..+.-. .........+++..|..+. .++.+.++|..+.+.+.++......
T Consensus 54 ~LyestG~~g~S~v~~vD~-~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-- 129 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDI-ESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-- 129 (262)
T ss_dssp EEEEEEEETTEEEEEEECT-TTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--
T ss_pred EEEEECCCCCCceEEEEEC-CCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--
Confidence 5677777766 8999999 455555555432 2333323333556666555 4889999999999999888753211
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
..++++++.|+.+..+++|.++|..+......+..-.....-..++.+.
T Consensus 130 -------------------------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 130 -------------------------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp -------------------------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred -------------------------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 1223466777776668899999998764443333221111113355677
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|. +|+..+..-.++.|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 7776666656889999999999998887642 136799999999876666664
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.50 E-value=4.3e-06 Score=93.75 Aligned_cols=203 Identities=10% Similarity=0.056 Sum_probs=125.6
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe--CCCcEEEEEccCCCeEEEEE-------ccccccEeEEEEecCCCE
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS--MDCRVKLWEVYKEHRCVRTY-------YGHRQAVRDICFNNTGTN 450 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~l-------~~H~~~V~sl~fspdg~~ 450 (1019)
..+..++++++| +++++.. .++.++||.+. .+.. ..+ .+|-..+.+++++++++.
T Consensus 17 ~~p~~va~~~~g--------------~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L 80 (343)
T 2qe8_A 17 LAPGNITLTPDG--------------RLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIV 80 (343)
T ss_dssp SCEEEEEECTTS--------------CEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEE
T ss_pred CCcceEEECCCC--------------CEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcE
Confidence 578899999988 4555543 23436666664 3432 222 235578999999999876
Q ss_pred EEEEEc-----CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCE-EE
Q psy307 451 FISAGY-----DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKW-LA 524 (1019)
Q Consensus 451 l~S~s~-----Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~-La 524 (1019)
+++-+. ++.|.+||+.+++.+..+.....+ .........+++++++.. ++
T Consensus 81 ~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------~~~~~~~~~v~vd~~~g~~yv 136 (343)
T 2qe8_A 81 WMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------TLSNSFVNDLAVDLIHNFVYI 136 (343)
T ss_dssp EEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------SCTTCCCCEEEEETTTTEEEE
T ss_pred EEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------cccccccceEEEecCCCEEEE
Confidence 665443 578999999999877666532110 011233567888876444 45
Q ss_pred EEe---cCCeEEEEEccCcccccceeEEeccc---------------------------cccceEEEEEcCCCCEEEEEe
Q psy307 525 CQS---MDNKILIFSALNRFKLNRKKTFEGHM---------------------------VAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 525 sgs---~Dg~I~iwd~~~~~~~~~~~~l~gh~---------------------------~~~~V~~v~fspdg~~Lasgs 574 (1019)
+.+ .++.|.+||+.++... ..+.+|. ....+..++|+|||++|+.++
T Consensus 137 td~~~~~~~~i~v~d~~~g~~~---r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 137 SDPAPDDKAALIRVDLQTGLAA---RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EECCSGGGCEEEEEETTTCCEE---EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EcCccCCCCeEEEEECCCCCEE---EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 554 6789999998755221 1121110 002367899999999998887
Q ss_pred CCC-eEEEEeCC---CC-----ceee--eeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 575 ADG-KCYIWDWK---TT-----KLFK--KWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 575 ~DG-~I~IWDl~---t~-----~~l~--~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
.++ .|+.++.. .+ +... ...++.+...++++.++| .++++...++.|.+|.
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVIT 275 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEE
Confidence 776 45444431 11 1111 112344456789999987 6888888888887764
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.48 E-value=9e-05 Score=79.46 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=134.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|+++++.++++...++.|.+++.... .....+.........+++++++ +.+.++....+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~~-------------~~lyv~d~~~~ 101 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHLG-------------RTIFWTDSQLD 101 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETTT-------------TEEEEEETTTT
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEecC-------------CeEEEEECCCC
Confidence 357899999976777777778899999998433 2222222222345667776654 25556666678
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc---CCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY---DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~---Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
.|.++++..... .............++++|++..|+.+.. .+.|..+++..... ..+.
T Consensus 102 ~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~----------------- 162 (267)
T 1npe_A 102 RIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILA----------------- 162 (267)
T ss_dssp EEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEE-----------------
T ss_pred EEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEE-----------------
Confidence 899999843322 1222222245688999997666655554 35777777643221 1110
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.........++++|++..| ++....+.|.++|...... .....+. .....++.. +..|+
T Consensus 163 ------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~~~~---~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 163 ------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---RKVLEGL---QYPFAVTSY--GKNLY 222 (267)
T ss_dssp ------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---EEEEECC---CSEEEEEEE--TTEEE
T ss_pred ------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce---EEEecCC---CCceEEEEe--CCEEE
Confidence 0111234567888876655 4455668999999875421 1222221 334566654 44454
Q ss_pred EEe-CCCeEEEEeCCCCceeeeeeccCC-CEEEEEEcCCC
Q psy307 572 SGD-ADGKCYIWDWKTTKLFKKWKAHDG-VCISTLWHPHE 609 (1019)
Q Consensus 572 sgs-~DG~I~IWDl~t~~~l~~l~~h~~-~V~sl~~sp~~ 609 (1019)
.++ ..+.|.++|..+++.+..+..... ...++++.|++
T Consensus 223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred EEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 444 568999999999999888864432 35677777765
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.46 E-value=1.3e-05 Score=88.31 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=139.5
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRC 428 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~ 428 (1019)
..|+.++.++.|..+|.. ++....+..+...+.++...+++ .++.++.++.|..+|.. +..
T Consensus 108 ~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g---------------~l~vgt~~~~l~~~d~~--g~~ 168 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDG---------------TIYVGSNDNYLYAINPD--GTE 168 (330)
T ss_dssp TEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTS---------------CEEEECTTSEEEEECTT--SCE
T ss_pred CEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCC---------------EEEEEcCCCEEEEECCC--CCE
Confidence 457778889999999984 44455555455555666665555 46678888999999984 555
Q ss_pred EEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCC
Q psy307 429 VRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTM 508 (1019)
Q Consensus 429 ~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~ 508 (1019)
...+......+.++...+++..++.+ +.|..+| .+++.+..+... .
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~------------------------------~ 214 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG------------------------------Y 214 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS------------------------------S
T ss_pred eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC------------------------------C
Confidence 55555556667778887788755443 8899999 676655443321 1
Q ss_pred CcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy307 509 HSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTK 588 (1019)
Q Consensus 509 ~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~ 588 (1019)
..+.++...++|. |.+++.++.|..++.... . ...+.... ..+.++.+.++|. |..++.+|.|..+|. +++
T Consensus 215 ~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~-~---~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 215 WTVTRPAISEDGT-IYVTSLDGHLYAINPDGT-E---KWRFKTGK--RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp CCCSCCEECTTSC-EEEEETTTEEEEECTTSC-E---EEEEECSS--CCCSCCEECTTSC-EEEECTTCEEEEECT-TSC
T ss_pred cceeceEECCCCe-EEEEcCCCeEEEECCCCC-E---eEEeeCCC--CccccceEcCCCe-EEEecCCCCEEEECC-CCc
Confidence 2355566677764 556677888888875332 2 22222221 2233455565665 666778888999995 777
Q ss_pred eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 589 LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 589 ~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+..+......+.++...+++ .|..++.+|.+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 286 EKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEE
T ss_pred EEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEE
Confidence 777766555566777776766 47778889988654
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=1.7e-05 Score=84.27 Aligned_cols=175 Identities=9% Similarity=-0.070 Sum_probs=117.0
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
.+..+.+.+|.|+++|+.+ ++.+..+ -..........++++.|+. .-.++.+.++|..+.+.+.++......
T Consensus 66 ~Ly~stG~~g~v~~iD~~T-gkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---- 138 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLES-AQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---- 138 (268)
T ss_dssp EEEEEETTTTEEEECCSSC-SSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC----
T ss_pred EEEEEcCCCCEEEEEECCC-CcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce----
Confidence 6788888889999999954 4444443 1223333223334455444 445889999999999999888753211
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.. ++++++.|+.+..+++|.++|..+......+..-.....-..++.+.|.
T Consensus 139 ---------------------------wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 139 ---------------------------WG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA 189 (268)
T ss_dssp ---------------------------CC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred ---------------------------eE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence 11 2346777877777999999999886444333322221111345677777
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
+|+..+..-.+..|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 7776665556789999999999998887632 136799999999877777764
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=4e-05 Score=94.10 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=111.8
Q ss_pred cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCC---CEEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTG---TNFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg---~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.|..+|.. +++.+..+.. |. .....+....+| ..++.++.+|.|.++|..+|+.+..+........-
T Consensus 284 sv~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 284 SIVALDPD-TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EEEEECTT-TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEECC-CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 58999984 4555554432 31 112222334477 57889999999999999999998877643211111
Q ss_pred EEecCCCeeeec--cCCCceeeeCC---CCCcccEEEEcCCCCEEEEEecC-----------------------------
Q psy307 484 KFHPDEDKQHLD--IPVDMKYIADP---TMHSMPAVTSSPNNKWLACQSMD----------------------------- 529 (1019)
Q Consensus 484 ~~~p~~~~~~~~--~~~~~~~i~~~---~~~~i~~v~~spdg~~Lasgs~D----------------------------- 529 (1019)
.+...+...... ..........+ ....-..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 111111100000 00000000111 01112357788887777775432
Q ss_pred --------------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 530 --------------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 530 --------------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
|.|..||+.++..... +... ..+....++.++.+++.|+.||.+++||..+++.+.++..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~---~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWS---VEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEE---EEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEee---cCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 7899999988744322 2211 2223344566788899999999999999999999999875
Q ss_pred cCC-CEEEEEEcCCCCcEEEEE
Q psy307 596 HDG-VCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 596 h~~-~V~sl~~sp~~~~~l~s~ 616 (1019)
..+ ...-+.|..+|..+++..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVA 538 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEEe
Confidence 432 223445667775555543
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.31 E-value=1.4e-07 Score=107.27 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=99.3
Q ss_pred CcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEE
Q psy307 405 AHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVK 484 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~ 484 (1019)
+..+++++.||.|+.||. .+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+|+.+..+......
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 368999999999999999 55566666655 45555556667778888889999999999988876554322100
Q ss_pred EecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 485 FHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 485 ~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.. ...+ .+. .+..+++++.|+.|+.||..++... ..+..+. ...++
T Consensus 82 -----------------~~-----~~sp--~~~-~~~~v~~g~~dg~v~a~D~~tG~~~---w~~~~~~------~~~~~ 127 (369)
T 2hz6_A 82 -----------------LV-----QASP--CRS-SDGILYMGKKQDIWYVIDLLTGEKQ---QTLSSAF------ADSLS 127 (369)
T ss_dssp -----------------HH-----TTCS--CC------CCCCEEEEEEEEECCC--------------------------
T ss_pred -----------------cc-----ccCc--eEe-cCCEEEEEeCCCEEEEEECCCCcEE---EEecCCC------ccccc
Confidence 00 0000 001 2446777888999999999987443 3333321 13456
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEeccceee
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE--PSKVVTAGWDAATAKVQDANIVK 632 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~--~~~l~s~s~Dg~I~iwwd~~i~k 632 (1019)
|++..|++++.||.|+.||..+|+.+..+..+. .....+.++. ...+++++.||.+..| |...++
T Consensus 128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~-d~~tG~ 194 (369)
T 2hz6_A 128 PSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTV-DSESGD 194 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEE-CTTTCC
T ss_pred ccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEE-ECCCCc
Confidence 788899999999999999999999877665322 1222333321 0357778889888554 444333
No 237
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.28 E-value=0.00026 Score=74.36 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=113.4
Q ss_pred cEEEEEeCC--CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEE-EEcCCeEEEEECCCCceEEEEecCCceEE
Q psy307 406 HLLLSCSMD--CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFIS-AGYDRYLKLWDTESGECISRFTSRKVAYC 482 (1019)
Q Consensus 406 ~~L~sgs~D--g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S-~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~ 482 (1019)
.+..+.+.+ +.|+.+|+ .+++.+....-... .........+..|.. .-.++.+.++|..+.+.+.++.......
T Consensus 32 ~LyestG~~g~S~v~~vD~-~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw- 108 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDL-ETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW- 108 (243)
T ss_dssp EEEEEECCTTSCEEEEEET-TTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-
T ss_pred EEEEECCCCCCceEEEEEC-CCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-
Confidence 566666665 48999999 45555555433221 222222233455544 4468899999999999998887543211
Q ss_pred EEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEE
Q psy307 483 VKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLD 562 (1019)
Q Consensus 483 v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~ 562 (1019)
.+.++++.|+++..+++|.++|..+......+..-.....-..++.+.
T Consensus 109 --------------------------------glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 109 --------------------------------ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp --------------------------------EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred --------------------------------EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 223456667777778999999998764433333222111113455666
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-------------CCCEEEEEEcCCCCcEEEEEe
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-------------DGVCISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-------------~~~V~sl~~sp~~~~~l~s~s 617 (1019)
|. +|+..+..-.+..|.+.|.++++.+..+... ....++++|+|++..+++||-
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 7776655556779999999999998887622 136799999998876666664
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.28 E-value=0.00045 Score=76.18 Aligned_cols=237 Identities=11% Similarity=0.064 Sum_probs=140.0
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc--------------------cCccEeEEEEcC-
Q psy307 331 WEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--------------------HRQAVRDICFNN- 389 (1019)
Q Consensus 331 l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--------------------h~~~V~~i~fsp- 389 (1019)
+.+.-....+++|.++ +.+++++..++.|..|+..... +..+.. ....+..+++.+
T Consensus 14 ~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp EECSSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred cCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 3343345667889986 7778888899999999874322 222210 012456677765
Q ss_pred CCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc----c-ccccEeEEEEec-CCCEEEEEEc-------
Q psy307 390 TGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY----G-HRQAVRDICFNN-TGTNFISAGY------- 456 (1019)
Q Consensus 390 dg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~----~-H~~~V~sl~fsp-dg~~l~S~s~------- 456 (1019)
++ .|+.+...+.|..+|.. ++. +..+. + .......+++.+ +|+.+++...
T Consensus 91 ~g---------------~l~v~d~~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 91 NN---------------QLYIVDCYYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp TT---------------EEEEEETTTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred CC---------------cEEEEECCCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 44 35555455557788763 222 22221 1 123467889999 8876665432
Q ss_pred ----------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 457 ----------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 457 ----------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
++.|..||..+++....... ......++++|+|+.|.++
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------------------------~~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKETTLLLKE-------------------------------LHVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTEEEEEEEE-------------------------------ESCCCEEEECTTSSEEEEE
T ss_pred cceehcccCCCceEEEEeCCCCEEEEeccC-------------------------------CccCcceEECCCCCEEEEE
Confidence 25677777665543221110 0123468889999866555
Q ss_pred -ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceeeeeec
Q psy307 527 -SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA----------DGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 527 -s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~----------DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+..+.|.+|++..... .....+... .+ ...++++++|++.++... .+.|..+|. .++.+..+..
T Consensus 203 d~~~~~I~~~~~~~~~~-~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKK-GTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp EGGGTEEEEEESSSTTT-TCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred eCCCCeEEEEECCCCcC-CccceEEeC--CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence 5678999999875321 111222211 13 678999999997666544 467888886 4777777754
Q ss_pred cC----CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 596 HD----GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 596 h~----~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.. ..+.++++. ++ .++++....+.|.++
T Consensus 278 ~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 278 PPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGIL 309 (322)
T ss_dssp CTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEE
T ss_pred CCCCccccceEEEEe-CC-EEEEeecCCCceEEE
Confidence 43 245666663 33 566665566677554
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.27 E-value=3.5e-05 Score=94.61 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=148.5
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEeccc-C----ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCc
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-R----QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCR 416 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~----~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~ 416 (1019)
+..|+.++.|+.|..+|.. +++.+..+..+ . ..+..--...+ ..++.++. +|.
T Consensus 128 ~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~~p~v~~---------------~~v~v~~~~~~~~~~g~ 191 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAA-TGKEVWHQNTFEGQKGSLTITGAPRVFK---------------GKVIIGNGGAEYGVRGY 191 (677)
T ss_dssp TTEEEEECTTSEEEEEETT-TCCEEEEEETTTTCCSSCBCCSCCEEET---------------TEEEECCBCTTTCCBCE
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEEeeecCCcCcCcCcccccCcEEEC---------------CEEEEEecccccCCCCE
Confidence 4578888999999999994 45555555443 1 01111000001 34455443 799
Q ss_pred EEEEEccCCCeEEEEEcccc--------------------------------ccEeEEEEecCCCEEEEEEcCC------
Q psy307 417 VKLWEVYKEHRCVRTYYGHR--------------------------------QAVRDICFNNTGTNFISAGYDR------ 458 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~--------------------------------~~V~sl~fspdg~~l~S~s~Dg------ 458 (1019)
|+.||.. +++.+..+.... .....+++++++..++.++.++
T Consensus 192 v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~ 270 (677)
T 1kb0_A 192 ITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHK 270 (677)
T ss_dssp EEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred EEEEECC-CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCC
Confidence 9999994 444444443211 1123578899988888877664
Q ss_pred -------------eEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC---CE
Q psy307 459 -------------YLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN---KW 522 (1019)
Q Consensus 459 -------------~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg---~~ 522 (1019)
.|..+|..+|+.+..+...... .| + .+ .......+....+| ..
T Consensus 271 ~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---~w---------d--------~~-~~~~p~l~~~~~dG~~~~~ 329 (677)
T 1kb0_A 271 VRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD---NW---------D--------YT-STQPMILADIKIAGKPRKV 329 (677)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC---CS---------C--------CC-CCSCCEEEEEEETTEEEEE
T ss_pred CCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc---cc---------c--------cc-cCCCcEEEecccCCcEeeE
Confidence 5999999999988777642100 00 0 00 00111122223466 67
Q ss_pred EEEEecCCeEEEEEccCcccccceeEEecc------ccccce------------------------EEEEEcCCCCEEEE
Q psy307 523 LACQSMDNKILIFSALNRFKLNRKKTFEGH------MVAGYA------------------------CSLDFSPDMSYLIS 572 (1019)
Q Consensus 523 Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh------~~~~~V------------------------~~v~fspdg~~Las 572 (1019)
++.++.+|.|+++|..++..+.....-... ....++ ..++++|++.++++
T Consensus 330 l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv 409 (677)
T 1kb0_A 330 ILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYL 409 (677)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEE
T ss_pred EEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEE
Confidence 889999999999999887543222100000 000000 14688999888877
Q ss_pred EeC-------------------------------------------CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCC
Q psy307 573 GDA-------------------------------------------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHE 609 (1019)
Q Consensus 573 gs~-------------------------------------------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~ 609 (1019)
... .|.|..||+.+++.+..++.. .++.+..+...+
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g 488 (677)
T 1kb0_A 410 PAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAG 488 (677)
T ss_dssp EEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETT
T ss_pred eChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCC
Confidence 543 278999999999998877643 334444555666
Q ss_pred CcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 610 PSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
.+++.++.||.++. +|...++++...
T Consensus 489 -~~v~~g~~dg~l~a-~D~~tG~~lw~~ 514 (677)
T 1kb0_A 489 -NVVFQGTADGRLVA-YHAATGEKLWEA 514 (677)
T ss_dssp -TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred -CEEEEECCCCcEEE-EECCCCceeeee
Confidence 47888899999965 466555555443
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.24 E-value=0.00011 Score=90.36 Aligned_cols=251 Identities=10% Similarity=0.030 Sum_probs=146.8
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecc--cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe------CCCcEEE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS------MDCRVKL 419 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs------~Dg~I~I 419 (1019)
+..|+.++.|+.|..+|..+ ++.+..+.. +......+..+| .+ .+ ..++.++ .+|.|..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~~~sP-------~v----~~-g~v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADHKRSYTITGAP-------RV----VN-GKVVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCSCTTSCCBCCSCC-------EE----ET-TEEEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEccCCEEEEEECCC-CCEeeeecCcCCCCCCccccCCc-------EE----EC-CEEEEEeCCCccCCCCEEEE
Confidence 34788889999999999944 444544432 111111111111 00 01 2344443 3789999
Q ss_pred EEccCCCeEEEEEcc-------------------------------ccccEeEEEEecCCCEEEEEEcCCe---------
Q psy307 420 WEVYKEHRCVRTYYG-------------------------------HRQAVRDICFNNTGTNFISAGYDRY--------- 459 (1019)
Q Consensus 420 WDl~~~~~~~~~l~~-------------------------------H~~~V~sl~fspdg~~l~S~s~Dg~--------- 459 (1019)
||.. +++.+..+.. +......++++|++..++.++.++.
T Consensus 188 ~D~~-tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 188 YDAE-TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp EETT-TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHT
T ss_pred EECC-CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCC
Confidence 9994 4444444321 1111235789998889988887764
Q ss_pred ----------EEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC---EEEE
Q psy307 460 ----------LKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK---WLAC 525 (1019)
Q Consensus 460 ----------I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~---~Las 525 (1019)
|..||..+|+.+..+.... .... -+ ....+.......+|+ .++.
T Consensus 267 ~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd----~~------------------~~~~~~l~d~~~~G~~~~~v~~ 324 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD----YT------------------ATQHMILAELPIDGKPRKVLMQ 324 (689)
T ss_dssp TCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC----CC------------------CCSCEEEEEEEETTEEEEEEEE
T ss_pred CCCCceeeeeEEEEEccCCceeEeeecCCccccc----cc------------------CCCCcEEEeeccCCcEEEEEEE
Confidence 9999999999888776421 0000 00 000011111222454 7888
Q ss_pred EecCCeEEEEEccCcccccceeE--------Ee-----------------cc---------ccccceEEEEEcCCCCEEE
Q psy307 526 QSMDNKILIFSALNRFKLNRKKT--------FE-----------------GH---------MVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 526 gs~Dg~I~iwd~~~~~~~~~~~~--------l~-----------------gh---------~~~~~V~~v~fspdg~~La 571 (1019)
++.+|.++++|..++..+..... +. .. .....-..++|+|+..+++
T Consensus 325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~y 404 (689)
T 1yiq_A 325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY 404 (689)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEE
Confidence 99999999999988754311100 00 00 0000011268889888777
Q ss_pred EEeC---------------------------------------------CCeEEEEeCCCCceeeeeeccCCCEEEEEEc
Q psy307 572 SGDA---------------------------------------------DGKCYIWDWKTTKLFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 572 sgs~---------------------------------------------DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~s 606 (1019)
+... +|.|..||+.|++.+..++.+.. +....+.
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~ 483 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLS 483 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccce
Confidence 6532 37899999999999888776543 3333445
Q ss_pred CCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 607 PHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
..+ .+++.++.||.++. ||...++++-..
T Consensus 484 tag-glvf~gt~dg~l~a-~D~~tG~~lw~~ 512 (689)
T 1yiq_A 484 TAG-NLVFEGSADGRVIA-YAADTGEKLWEQ 512 (689)
T ss_dssp ETT-TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred ECC-CEEEEECCCCcEEE-EECCCCccceee
Confidence 555 48899999999965 566666665443
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.23 E-value=3e-05 Score=91.47 Aligned_cols=258 Identities=8% Similarity=0.050 Sum_probs=140.3
Q ss_pred CCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-cCccEeEEEE-c-CCCCceeEEEee---cCCCCcEEEE-EeCCCcEE
Q psy307 346 KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-HRQAVRDICF-N-NTGTNFISAIRW---FPKSAHLLLS-CSMDCRVK 418 (1019)
Q Consensus 346 d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~f-s-pdg~~~vs~i~~---~p~~~~~L~s-gs~Dg~I~ 418 (1019)
|+..++++...++.|.+-|+ ...++...+.- .......+++ + |++.++..+..+ .|+++..|.. .-.++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 43444555556778999999 55566664321 2245778887 4 787533222211 1111111111 12356788
Q ss_pred EEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCC---------------eEEEEECCCCceEEEEecCCceEEE
Q psy307 419 LWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDR---------------YLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg---------------~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
+.|.. +.+....+.--. .-..++++|+|+++++++++. .|.+.|...... ....++... +
T Consensus 179 vID~~-t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~~-i 253 (595)
T 1fwx_A 179 AVDAD-KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQE-L 253 (595)
T ss_dssp EEETT-TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSEE-E
T ss_pred EEECC-CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCeeE-E
Confidence 99984 445555443211 345568999999999888764 355555422110 000000000 0
Q ss_pred EEecCCCeeeeccCC--C---ceeeeCCCCCcccEEEEcCCCCEEEEEe-cCCeEEEEEccCccc-----cccee-EEec
Q psy307 484 KFHPDEDKQHLDIPV--D---MKYIADPTMHSMPAVTSSPNNKWLACQS-MDNKILIFSALNRFK-----LNRKK-TFEG 551 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~~--~---~~~i~~~~~~~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~-----~~~~~-~l~g 551 (1019)
+...+++... . ..++. -.....++.++|||+++++++ .+++|.++|+.+... +.... ....
T Consensus 254 -----~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 254 -----NGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp -----TTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred -----CcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 1111222221 1 11111 123456789999999887765 678999999985421 00000 1111
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceeeeeeccCCCE-----EEEEEcCCCCcEEEEE
Q psy307 552 HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT----------TKLFKKWKAHDGVC-----ISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t----------~~~l~~l~~h~~~V-----~sl~~sp~~~~~l~s~ 616 (1019)
-..+.....++|+|+|...++.-.|+.|.+||+.+ .+.+.++..|-.+- .++..+|||. +|+++
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk-~l~~~ 405 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND-WLVCL 405 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS-EEEEE
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC-EEEEc
Confidence 11223477899999994445666799999999987 56777777665432 1224578885 45444
Q ss_pred e
Q psy307 617 G 617 (1019)
Q Consensus 617 s 617 (1019)
.
T Consensus 406 N 406 (595)
T 1fwx_A 406 S 406 (595)
T ss_dssp E
T ss_pred C
Confidence 3
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.19 E-value=6.7e-05 Score=82.53 Aligned_cols=255 Identities=12% Similarity=0.054 Sum_probs=147.4
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCV 372 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~ 372 (1019)
..+.+|+.+ .+..++.+..++ ... +.+..+..+...+.++...++ +. |+.++.+ |..+|. . ++.+
T Consensus 26 ~~d~~g~l~-v~t~~~~l~~~d-~~g-------~~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~-~-g~~~ 90 (330)
T 3hxj_A 26 ILAKNGTIY-LGSSNKNLYAIN-TDG-------SVKWFFKSGEIIECRPSIGKD-GT-IYFGSDK--VYAINP-D-GTEK 90 (330)
T ss_dssp EECTTSCEE-CSSTTTTTEEEC-TTS-------CEEESSCGGGEEEECCEETTT-TE-ECCSSCE--EEEECC-C-GGGG
T ss_pred eEccCCeEE-EEcCCCEEEEEC-CCC-------cEEEEEecCCCcccceEEecC-Cc-EEEecCc--EEEECC-C-CcEE
Confidence 345566654 444667777776 321 122222333445566776654 43 5555544 777775 2 2222
Q ss_pred EEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE
Q psy307 373 RTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI 452 (1019)
Q Consensus 373 ~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~ 452 (1019)
..+...........+. ...|..++.++.|..+|.. +........+...+.++...+++. ++
T Consensus 91 ~~~~~~~~~~~~~~~~----------------~~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g~-l~ 151 (330)
T 3hxj_A 91 WRFDTKKAIVSDFTIF----------------EDILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDGT-IY 151 (330)
T ss_dssp GGSCC-----CCEEEE----------------TTEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTSC-EE
T ss_pred EEEECCCCcccCceEE----------------CCEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCCE-EE
Confidence 2222221111122221 2467888889999999984 555555555555667777777776 56
Q ss_pred EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeE
Q psy307 453 SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKI 532 (1019)
Q Consensus 453 S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I 532 (1019)
.++.++.|..+|.. ++.+..+.... ..+.++...+++..+ +++ +.|
T Consensus 152 vgt~~~~l~~~d~~-g~~~~~~~~~~------------------------------~~~~~~~~d~~g~l~-v~t--~~l 197 (330)
T 3hxj_A 152 VGSNDNYLYAINPD-GTEKWRFKTND------------------------------AITSAASIGKDGTIY-FGS--DKV 197 (330)
T ss_dssp EECTTSEEEEECTT-SCEEEEEECSS------------------------------CCCSCCEECTTCCEE-EES--SSE
T ss_pred EEcCCCEEEEECCC-CCEeEEEecCC------------------------------CceeeeEEcCCCEEE-EEe--CEE
Confidence 67788999999988 77665544221 123345556667644 444 888
Q ss_pred EEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcE
Q psy307 533 LIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSK 612 (1019)
Q Consensus 533 ~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~ 612 (1019)
..|| .++... ..+.... ..+.++..+++|. |..++.++.|..+| .+++.+..+......+.++...+++ .
T Consensus 198 ~~~d-~~g~~~---~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g--~ 267 (330)
T 3hxj_A 198 YAIN-PDGTEK---WNFYAGY--WTVTRPAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD--T 267 (330)
T ss_dssp EEEC-TTSCEE---EEECCSS--CCCSCCEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS--C
T ss_pred EEEC-CCCcEE---EEEccCC--cceeceEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC--e
Confidence 9998 444222 2222221 3466778888876 44566677888888 4666666665544444455555555 5
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
|..++.+|.+..+
T Consensus 268 l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 268 IYFGSYDGHLYAI 280 (330)
T ss_dssp EEEECTTCEEEEE
T ss_pred EEEecCCCCEEEE
Confidence 7777888778666
No 243
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.19 E-value=0.0011 Score=72.72 Aligned_cols=247 Identities=7% Similarity=-0.049 Sum_probs=134.4
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCC
Q psy307 325 KTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKS 404 (1019)
Q Consensus 325 ~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~ 404 (1019)
.+.+..+..+ .....++|+++ +.++++...++.|..||.... ....+. .......+++.++|
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~dG------------- 83 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNG------------- 83 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTS-------------
T ss_pred ceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcCCC-------------
Confidence 3455555433 46788999995 677777778899999997432 222222 23457778888877
Q ss_pred CcEEEEEeCCC--cEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 405 AHLLLSCSMDC--RVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 405 ~~~L~sgs~Dg--~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
+++++..... .|..+|.. .+....... ........++..+++..+++...++.|..+|..++........
T Consensus 84 -~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~----- 156 (306)
T 2p4o_A 84 -DLVATGWNADSIPVVSLVKS-DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH----- 156 (306)
T ss_dssp -CEEEEEECTTSCEEEEEECT-TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----
T ss_pred -cEEEEeccCCcceEEEEcCC-CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC-----
Confidence 4444443322 35556653 333222211 1122234455555444344444578888888765431111000
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEE
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACS 560 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~ 560 (1019)
+... .............+ +|+++.|. +-+..+.|..|++.....+.....+... .....
T Consensus 157 -----~~~~----------~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~g 216 (306)
T 2p4o_A 157 -----PMLA----------RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDD 216 (306)
T ss_dssp -----GGGS----------CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSS
T ss_pred -----Cccc----------cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCC
Confidence 0000 00000001112234 77876554 4456789999998742111112222111 23456
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceee--eeeccCCCEEEEEEc---CCCCcEEEEEe
Q psy307 561 LDFSPDMSYLISGDADGKCYIWDWKTTKLFK--KWKAHDGVCISTLWH---PHEPSKVVTAG 617 (1019)
Q Consensus 561 v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~--~l~~h~~~V~sl~~s---p~~~~~l~s~s 617 (1019)
++++++|++.++....+.|.++|.. ++... .+...-...++++|. |++..++++.+
T Consensus 217 i~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 217 FAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred eEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 8999999987777778899999975 65532 333333468899998 77755555544
No 244
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.18 E-value=0.001 Score=74.86 Aligned_cols=254 Identities=7% Similarity=-0.042 Sum_probs=138.7
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccC---------ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHR---------QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVK 418 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~---------~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~ 418 (1019)
+..++.++.++.|..+|..+ ++.+..+.... ..+.+.... ....++.++.++.|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVTV---------------SGGHVYIGSEKAQVY 116 (376)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEEE---------------ETTEEEEEETTSEEE
T ss_pred CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCceE---------------eCCEEEEEcCCCEEE
Confidence 45677888899999999844 44444433221 112111111 124788889999999
Q ss_pred EEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE------EEEEe------
Q psy307 419 LWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY------CVKFH------ 486 (1019)
Q Consensus 419 IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~------~v~~~------ 486 (1019)
.+|.. +++.................. +..++.++.++.|..+|..+|+.+..+.....+. .....
T Consensus 117 a~d~~-tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~ 193 (376)
T 3q7m_A 117 ALNTS-DGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV 193 (376)
T ss_dssp EEETT-TCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE
T ss_pred EEECC-CCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE
Confidence 99984 444444443332222222222 4578888899999999999999888776543221 11111
Q ss_pred --cCCCeeeeccCCCcee-eeCCCC--C-----cccEEEEcC--CCCEEEEEecCCeEEEEEccCcccccceeEEecccc
Q psy307 487 --PDEDKQHLDIPVDMKY-IADPTM--H-----SMPAVTSSP--NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 487 --p~~~~~~~~~~~~~~~-i~~~~~--~-----~i~~v~~sp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.++....++....... ...... . .+..+...| .+..+++++.++.+..+|..++... .....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~---w~~~~--- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM---WKREL--- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE---EEECC---
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE---eeccC---
Confidence 0111122222111111 000000 0 000000111 2466778888999999999877433 22211
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeee
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKI 633 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki 633 (1019)
.....+.. ++..|+.++.+|.|..+|..+++.+..... ....+...... + ..|+.++.+|.+..+ +...+++
T Consensus 268 -~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~-d~~tG~~ 340 (376)
T 3q7m_A 268 -GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWI-NVEDGRF 340 (376)
T ss_dssp -CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEE-ETTTCCE
T ss_pred -CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEE-ECCCCcE
Confidence 12333443 466788888899999999999998776652 22222222222 3 368888888888554 4444443
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.15 E-value=0.00038 Score=74.56 Aligned_cols=214 Identities=8% Similarity=0.011 Sum_probs=131.5
Q ss_pred cceeeeccCCC--CeEEEEEcCCCCcEEEEeeC--CCeEEEEecCCCcEEEEEecc-cCccEeEEEEcCCCCceeEEEee
Q psy307 326 TQVHTWEGHTK--GISAIRWFPKSAHLLLSCSM--DCRVKLWEVYKERRCVRTYYG-HRQAVRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 326 ~~i~~l~gH~~--~V~~i~fspd~g~lLaSgs~--Dg~I~IWdl~~~~~~~~~~~g-h~~~V~~i~fspdg~~~vs~i~~ 400 (1019)
+.+.++. |.. ....+.|+|+ +.+.++.+. ++.|.+.|+. .++.+..+.- .......+++. +
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~~~~fgeGi~~~--g--------- 75 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQ-TGKVENIHKMDDSYFGEGLTLL--N--------- 75 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETT-TCCEEEEEECCTTCCEEEEEEE--T---------
T ss_pred eEEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECC-CCCEEEEEecCCCcceEEEEEe--C---------
Confidence 4555553 443 3579999996 555555543 6899999994 4555555431 11111223332 2
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
..+.++.-.++.+.++|. .+.+.+..+..-... ...+++||+.++.+..+++|.++|..+.+.+..+......
T Consensus 76 ----~~lyv~t~~~~~v~viD~-~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 76 ----EKLYQVVWLKNIGFIYDR-RTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp ----TEEEEEETTCSEEEEEET-TTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred ----CEEEEEEecCCEEEEEEC-CCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 245556667899999999 456666666432111 2245668887777777899999999999888777642100
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc--------
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH-------- 552 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh-------- 552 (1019)
. .......+.+. +|..++....++.|.+.|..++.....+.. .+.
T Consensus 149 ~-------------------------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~-~g~~~~~~~~~ 201 (266)
T 2iwa_A 149 H-------------------------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL-PNLRKKLIDEG 201 (266)
T ss_dssp E-------------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC-HHHHHHHHHTT
T ss_pred c-------------------------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC-CCccccccccc
Confidence 0 00112344555 565555555688999999998754322221 111
Q ss_pred -ccccceEEEEEcCCCCE-EEEEeCCCeEEEEeCCCC
Q psy307 553 -MVAGYACSLDFSPDMSY-LISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 553 -~~~~~V~~v~fspdg~~-Lasgs~DG~I~IWDl~t~ 587 (1019)
........++|+|+++. ++++...++|.+.++...
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 11134689999999864 556667888988887654
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.09 E-value=0.00058 Score=77.91 Aligned_cols=193 Identities=11% Similarity=0.017 Sum_probs=123.1
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEc------c-ccccEeEEEEecCCCEEEEEEcC------CeEEEEEC
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYY------G-HRQAVRDICFNNTGTNFISAGYD------RYLKLWDT 465 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~------~-H~~~V~sl~fspdg~~l~S~s~D------g~I~lWDl 465 (1019)
++...++++|..++.|.++|+.+. .+...++. . -...-..+..+|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 444567778888999999998433 25555552 1 11245567888999 77777666 78999999
Q ss_pred CCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe------------------
Q psy307 466 ESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS------------------ 527 (1019)
Q Consensus 466 ~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs------------------ 527 (1019)
.+++.+.++...... ..-...+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~---------------------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD---------------------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp TTCCEEEECCSBCTT---------------------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred CCCeEEEEEccCCCC---------------------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence 999998887643210 01112466788888777764
Q ss_pred -cCCeEEEEEccCcccccceeEEeccccccceEEEEE--cCCCCEEEEEe------CCCeEEEEeCCCCce--eeee--e
Q psy307 528 -MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDF--SPDMSYLISGD------ADGKCYIWDWKTTKL--FKKW--K 594 (1019)
Q Consensus 528 -~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~f--spdg~~Lasgs------~DG~I~IWDl~t~~~--l~~l--~ 594 (1019)
.+++|.+||+.++. .+.++.-.........+.| +|+|+++.+++ .+++|.+|....++. .+.+ .
T Consensus 225 ~~~d~V~v~D~~~~k---~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 225 RYGNRIHFWDLRKRK---RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp HSCCEEEEEETTTTE---EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred ccCCEEEEEECCCCc---EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence 36899999998752 2334433211123445555 99999988777 456888776554321 1111 1
Q ss_pred cc----------------CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 595 AH----------------DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 595 ~h----------------~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.. ......+.++|++..+.++.-..+.|.++
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf 348 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY 348 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 10 23467899999996555666666777655
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.08 E-value=0.0027 Score=67.70 Aligned_cols=188 Identities=8% Similarity=-0.062 Sum_probs=107.7
Q ss_pred eecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEE-EcCCeEEEEECCCCceEEEEecC
Q psy307 399 RWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISA-GYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 399 ~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~-s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
+|.+..+.++++...++.|..+++.. ...............++++++++..++.+ ...+.|.++++...........
T Consensus 42 ~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~- 119 (267)
T 1npe_A 42 AFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT- 119 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred EEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC-
Confidence 33333335666667788999999843 33333333333567889999976665544 4567888888764322111110
Q ss_pred CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec---CCeEEEEEccCcccccceeEEecccc
Q psy307 478 KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM---DNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 478 ~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~---Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.......++++|++..|..+.. .+.|..+++.... ...+.. ..
T Consensus 120 -----------------------------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~-~~ 165 (267)
T 1npe_A 120 -----------------------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQ-DN 165 (267)
T ss_dssp -----------------------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEEC-TT
T ss_pred -----------------------------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEE-CC
Confidence 0122356777886555544443 4688888876432 122211 11
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
......++++|++..|..++ ..+.|.++|.........+.. .....+++.. ++.++++....+.|.++
T Consensus 166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 14578899999877665554 567999999976544333332 2234566553 43455555455666554
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.01 E-value=0.00058 Score=80.53 Aligned_cols=210 Identities=9% Similarity=0.018 Sum_probs=135.1
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcc-ccccEeEEEE-e-cCCCEEEEEE------------------cCCeEEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYG-HRQAVRDICF-N-NTGTNFISAG------------------YDRYLKLWD 464 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~-H~~~V~sl~f-s-pdg~~l~S~s------------------~Dg~I~lWD 464 (1019)
.++++...++.|.+.|+ ...++...+.- ....+..+++ + |+++++++++ +++.+.++|
T Consensus 103 ~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID 181 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 181 (595)
T ss_dssp EEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence 34444455677999999 55566664432 2245778887 5 8999988885 356899999
Q ss_pred CCCCceEEEEecCCceEEEEEecCCCeeeeccCCCce--eeeCCCCCcccEE---------EEcCCCCEEEEEecCCeEE
Q psy307 465 TESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMK--YIADPTMHSMPAV---------TSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 465 l~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~--~i~~~~~~~i~~v---------~~spdg~~Lasgs~Dg~I~ 533 (1019)
..+.+.+.++.....+..++++|++....+....... .+..........+ .+.++|++... +.|.
T Consensus 182 ~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~ 257 (595)
T 1fwx_A 182 ADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVK 257 (595)
T ss_dssp TTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEE
T ss_pred CCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----CcEE
Confidence 9999999998876677888899988776663322111 0000000000111 12445655443 5599
Q ss_pred EEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc------------eeeeeeccCCCE
Q psy307 534 IFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTK------------LFKKWKAHDGVC 600 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~------------~l~~l~~h~~~V 600 (1019)
|.|..+......+..+... ....++.++|||+++++++ .+.+|.++|+.+.+ .+..+..-. ..
T Consensus 258 VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-gP 333 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-GP 333 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-CE
T ss_pred EEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-Cc
Confidence 9999872110102222211 2245789999999876655 67899999998653 334444333 46
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 601 ISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..++|+|+| ...++.-.|+.|.+|
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKW 357 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEE
T ss_pred ceEEECCCC-eEEEEEecCCcEEEE
Confidence 899999999 788888899999775
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.00 E-value=0.00088 Score=82.02 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=104.9
Q ss_pred cEEEEEccCCCeEEEEEcc--cc-------ccEeEEEEecCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCceEEE
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR-------QAVRDICFNNTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVAYCV 483 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~-------~~V~sl~fspdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v 483 (1019)
.|..+|. .+++.+..+.. |. .+.....+..+|+ .++.++.+|.+.++|..+|+.+............
T Consensus 271 ~v~AlD~-~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 271 SILAIRP-DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp EEEEECT-TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eEEEEcC-CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 4889998 45555555443 32 2222223334665 5888999999999999999998766543311111
Q ss_pred EEecCCCeeeeccC---CCceeeeCCC---CCcccEEEEcCCCCEEEEE-------------------------------
Q psy307 484 KFHPDEDKQHLDIP---VDMKYIADPT---MHSMPAVTSSPNNKWLACQ------------------------------- 526 (1019)
Q Consensus 484 ~~~p~~~~~~~~~~---~~~~~i~~~~---~~~i~~v~~spdg~~Lasg------------------------------- 526 (1019)
.+.+....-..... .....+..+. ...-..++++|+...+.+.
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 12111000000000 0000111110 1112235666665554432
Q ss_pred -----ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-
Q psy307 527 -----SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC- 600 (1019)
Q Consensus 527 -----s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V- 600 (1019)
..+|.|..||+.++........ . .......+...|.+|+.|+.||.|+.||.++++.+..++...+..
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~---~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~ 503 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPY---P---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA 503 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEE---S---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccC---C---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCccc
Confidence 1347899999988754322221 1 112222334467889999999999999999999998887654211
Q ss_pred EEEEEcCCCCcEEEEEe
Q psy307 601 ISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 601 ~sl~~sp~~~~~l~s~s 617 (1019)
.-+.+..+|..+++.++
T Consensus 504 ~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 504 APMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred CceEEEECCEEEEEEEe
Confidence 12333445544554444
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.92 E-value=0.00068 Score=71.91 Aligned_cols=197 Identities=8% Similarity=0.063 Sum_probs=120.3
Q ss_pred cceeeeccCCCC--eEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEe--EEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKG--ISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVR--DICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~--V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~--~i~fspdg~~~vs~i~~~ 401 (1019)
+.+.++ -|... ...+.|+. +.+..+.+.+|.|+++|+.+ ++.+..+.. .... .+.+. +
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~T-gkv~~~~l~--~~~FgeGit~~--g---------- 105 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLES-AQPVWMERL--GNIFAEGLASD--G---------- 105 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSC-SSCSEEEEC--TTCCEEEEEEC--S----------
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCC-CcEEeEECC--CCcceeEEEEe--C----------
Confidence 345555 34333 36788863 68888889999999999954 444444311 1221 23332 2
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..+.++...++.+.+||. .+.+.+.++..-.. -+.++ ++++.|+.+..++.|.++|..+.+.+.++.......
T Consensus 106 ---~~Ly~ltw~~~~v~V~D~-~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~ 178 (268)
T 3nok_A 106 ---ERLYQLTWTEGLLFTWSG-MPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ 178 (268)
T ss_dssp ---SCEEEEESSSCEEEEEET-TTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred ---CEEEEEEccCCEEEEEEC-CcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc
Confidence 245666667899999999 56666666654322 23344 577887777779999999999999888776422100
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEE--e------ccc
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTF--E------GHM 553 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l--~------gh~ 553 (1019)
. ...++.+.+. +|..++....++.|.+.|..++.....+..- . .+.
T Consensus 179 ~-------------------------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~ 232 (268)
T 3nok_A 179 P-------------------------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTN 232 (268)
T ss_dssp E-------------------------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCC
T ss_pred c-------------------------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccC
Confidence 0 0112334444 6665555556889999999887543222210 0 111
Q ss_pred cccceEEEEEcCCCC-EEEEE
Q psy307 554 VAGYACSLDFSPDMS-YLISG 573 (1019)
Q Consensus 554 ~~~~V~~v~fspdg~-~Lasg 573 (1019)
.....+.|+++|+++ ++++|
T Consensus 233 ~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 233 PEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCCEEEEEECTTTCCEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEeC
Confidence 224578999999765 45555
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.88 E-value=0.0082 Score=67.12 Aligned_cols=208 Identities=8% Similarity=-0.029 Sum_probs=119.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|.+.++.++++-...+.|..+++.... ....+.........+++.+.+ +.+.++-...+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~-------------g~ly~~d~~~~ 138 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVH-------------DKLYWTDSGTS 138 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEEEeCCCCCccEEEEecCC-------------CeEEEEcCCCC
Confidence 4578999998777777777788999999985432 112222222334556665433 35666666778
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEE-cC-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAG-YD-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s-~D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ........-.....|+++|.+..|+.+. .. +.|...++....... +
T Consensus 139 ~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~------------------- 197 (349)
T 3v64_C 139 RIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI-I------------------- 197 (349)
T ss_dssp EEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-S-------------------
T ss_pred eEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE-E-------------------
Confidence 88888874332 2222333345678899998666555443 33 567777665322111 1
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
..........++++|++..|. +-+..+.|..+++..... ...+.... .....+++. .+.+.++
T Consensus 198 ----------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~--~~P~giav~-~~~ly~t 261 (349)
T 3v64_C 198 ----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGL--PHPFAITVF-EDSLYWT 261 (349)
T ss_dssp ----------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSC--SSEEEEEEE-TTEEEEE
T ss_pred ----------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCC--CCceEEEEE-CCEEEEe
Confidence 011122345678887555554 445567899999875421 12222221 345667773 4444455
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|..++..+|+.+..+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 5556777777766666555553
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.86 E-value=0.0089 Score=67.81 Aligned_cols=208 Identities=7% Similarity=-0.047 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+++|.+.++.++++-...+.|..+++.... ....+.........+++.+.+ +.+.++-...+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~-------------g~lY~~d~~~~ 181 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVH-------------DKLYWTDSGTS 181 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEECSSCSCCCCEEEETTT-------------TEEEEEETTTT
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEeCCCCCccEEEEEeCC-------------CeEEEEcCCCC
Confidence 4588999998777777777788999999984432 222222222233455555433 35666666677
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ....+.........|+++|.+..|+.+.. . +.|...++..........
T Consensus 182 ~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------------ 242 (386)
T 3v65_B 182 RIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------ 242 (386)
T ss_dssp EEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------------
T ss_pred eEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE------------------
Confidence 88888874322 22233333456788999987766555443 3 567777665432211111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
........++++|++..| ++-+..+.|..+++..... ...+... ......+++ ..+.++++
T Consensus 243 ------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 243 ------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---EEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred ------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---EEEEECC--CCCceEEEE-ECCEEEEe
Confidence 111234467777655544 4445667899999865321 1222222 134667777 34445555
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|..+|..+|+.+..+.
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCeEEEEECCCCcceEEEc
Confidence 5567788888877777666654
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.82 E-value=0.021 Score=71.22 Aligned_cols=261 Identities=10% Similarity=0.063 Sum_probs=152.8
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc-------cCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG-------HRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g-------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
...|.++...++ +. |..|+.++-|.+||... .+....... ....|.++...++| .
T Consensus 214 ~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---------------~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSP-TR-IWVATEGAGLFLINPKT-KEIKNYLHSPSNPKSISSNYIRSLAMDSQN---------------R 275 (795)
T ss_dssp CCCEEEEEEEET-TE-EEEEEBSSCEEEEETTT-TEEEEECCCTTCTTSCSCSBEEEEEECTTS---------------C
T ss_pred CCeeEEEEEcCC-CC-EEEEECCCCeEEEeCCC-CeEEEeecCCCCccccCCCeEEEEEEcCCC---------------C
Confidence 457888887774 44 44455554588898743 332222111 13458888777776 3
Q ss_pred EEEEeCCCcEEEEEccCCCeEEEEEcc-------ccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----
Q psy307 408 LLSCSMDCRVKLWEVYKEHRCVRTYYG-------HRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT----- 475 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~~~~~~~~~l~~-------H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~----- 475 (1019)
|..|+.+ -|.+||.. .......... ....|.++...++|. |..|+.++-|..|+..++.......
T Consensus 276 lWigt~~-Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 352 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEG-TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN 352 (795)
T ss_dssp EEEEESS-CEEEEETT-TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSS
T ss_pred EEEEeCC-hhheEcCC-CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCC
Confidence 4455555 58888873 3333332211 235799999998886 5567788889999876654322211
Q ss_pred --cCCceEEEEEecCCCeeee---------ccCC-CceeeeC--------CCCCcccEEEEcCCCCEEEEEecCCeEEEE
Q psy307 476 --SRKVAYCVKFHPDEDKQHL---------DIPV-DMKYIAD--------PTMHSMPAVTSSPNNKWLACQSMDNKILIF 535 (1019)
Q Consensus 476 --~~~~v~~v~~~p~~~~~~~---------~~~~-~~~~i~~--------~~~~~i~~v~~spdg~~Lasgs~Dg~I~iw 535 (1019)
....+.++...+++..-+- +... ....... .....|.+++..++|..|.+|+.++-|.+|
T Consensus 353 ~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 1234677776665542221 1111 1111111 123457788888888867778888889999
Q ss_pred EccCcccccceeEEec---cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee------ccCCCEEEEEEc
Q psy307 536 SALNRFKLNRKKTFEG---HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK------AHDGVCISTLWH 606 (1019)
Q Consensus 536 d~~~~~~~~~~~~l~g---h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~------~h~~~V~sl~~s 606 (1019)
|..++. ...+.. ......|.++...++|.+.+.. .+ -|.+||..+++...... .+...|.++...
T Consensus 433 d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 433 HRNSGQ----VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp ETTTCC----EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred eCCCCc----EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 987642 122211 0122468899999988866554 44 48899988765433221 123578999888
Q ss_pred CCCCcEEEEEeCCCcEEEE
Q psy307 607 PHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 607 p~~~~~l~s~s~Dg~I~iw 625 (1019)
+++. +..|+.+ .+.++
T Consensus 507 ~~g~--lWigt~~-Gl~~~ 522 (795)
T 4a2l_A 507 SHKR--LWIGGEE-GLSVF 522 (795)
T ss_dssp TTCC--EEEEESS-CEEEE
T ss_pred CCCC--EEEEeCC-ceEEE
Confidence 8873 3334444 45454
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.80 E-value=0.023 Score=70.88 Aligned_cols=297 Identities=8% Similarity=0.042 Sum_probs=168.8
Q ss_pred CCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEE
Q psy307 294 TDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVR 373 (1019)
Q Consensus 294 ~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~ 373 (1019)
.+.+|+.++... + .+.+++................-.-....|.++...++ |. |..|+.++-|..|+..... ..
T Consensus 270 ~d~~g~lWigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~--~~ 343 (795)
T 4a2l_A 270 MDSQNRLWIGTF-N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNR--FK 343 (795)
T ss_dssp ECTTSCEEEEES-S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGS--SE
T ss_pred EcCCCCEEEEeC-C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCccc--ce
Confidence 456788776553 3 67777644211100000000000113357999998875 43 5667777888888863221 12
Q ss_pred Eecc-------cCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc--------cccc
Q psy307 374 TYYG-------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG--------HRQA 438 (1019)
Q Consensus 374 ~~~g-------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~--------H~~~ 438 (1019)
.+.. ....|.++...++| .|..|+.++-|..|+... +........ ....
T Consensus 344 ~~~~~~~~~~l~~~~V~~i~~d~~g---------------~lWiGt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 344 NIRNIPYKNSLSDNVVSCIVEDKDK---------------NLWIGTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp EECCCTTSSSCSCSSEEEEEECTTS---------------CEEEEESSSCEEEECTTT-CCEEEECCC------CCSCSC
T ss_pred EEcCCCCCCCCCCCeeEEEEECCCC---------------CEEEEECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCcc
Confidence 2211 23457777777666 366788888899998743 322222111 2467
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe-----cCCceEEEEEecCCCeeeec--------cCCC-ceeee
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT-----SRKVAYCVKFHPDEDKQHLD--------IPVD-MKYIA 504 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~-----~~~~v~~v~~~p~~~~~~~~--------~~~~-~~~i~ 504 (1019)
|.+++..++|+.|..|+.++-|.+||..+++...... ....+.++...+++...+.. .... .....
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIE 487 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECC
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEcc
Confidence 9999998888756778888889999998877543321 12456777766655422211 1111 01111
Q ss_pred ------CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEe-----ccccccceEEEEEcCCCCEEEEE
Q psy307 505 ------DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFE-----GHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 505 ------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-----gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
......|.++...++|.+.+.. . +.|..|+..+... .+. .......|.++..+++|.+.+++
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-----QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-----EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred ccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-----EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 0112457788888888765544 4 5688888765421 111 01122568899999999866654
Q ss_pred eCCCeEEEEeCCCCceeeeeec----cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 574 DADGKCYIWDWKTTKLFKKWKA----HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~~----h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
. . -|..||..+++.. .+.. ....|.++...++|. |..++..| |..+
T Consensus 561 ~-~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~--lWi~t~~G-l~~~ 610 (795)
T 4a2l_A 561 R-E-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGR--LWLSTNRG-ISCF 610 (795)
T ss_dssp S-S-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSC--EEEEETTE-EEEE
T ss_pred C-C-CceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCC--EEEEcCCc-eEEE
Confidence 4 3 4888998776543 2321 134688888888773 44444444 4343
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.80 E-value=0.0022 Score=67.96 Aligned_cols=202 Identities=9% Similarity=0.055 Sum_probs=120.0
Q ss_pred cceeeeccCCCC--eEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeec
Q psy307 326 TQVHTWEGHTKG--ISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 326 ~~i~~l~gH~~~--V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
+.+.++ -|... ...+.|+ + +.+..+++.+| .|+++|+. +++.+..+.-.. ......+.+++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~-~~FgeGit~~g---------- 96 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGK-RYFGEGISDWK---------- 96 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTT-TCCEEEEEECCT-TCCEEEEEEET----------
T ss_pred EEEEEe-cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECC-CCcEEEEEecCC-ccceeEEEEeC----------
Confidence 455666 34433 3778887 3 67777888776 99999994 455555543221 12111111122
Q ss_pred CCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceE
Q psy307 402 PKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAY 481 (1019)
Q Consensus 402 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~ 481 (1019)
..+.++...++.+.+||. .+.+.+.++...... + .++++++.|+.+..++.|.++|..+.+.+.++.....-.
T Consensus 97 ---~~ly~ltw~~~~v~v~D~-~t~~~~~ti~~~~eG-~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 97 ---DKIVGLTWKNGLGFVWNI-RNLRQVRSFNYDGEG-W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp ---TEEEEEESSSSEEEEEET-TTCCEEEEEECSSCC-C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE
T ss_pred ---CEEEEEEeeCCEEEEEEC-ccCcEEEEEECCCCc-e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc
Confidence 245555566899999999 555566665542221 2 344577777776668889999999999888776421000
Q ss_pred EEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeE--Ee-----cccc
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKT--FE-----GHMV 554 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~--l~-----gh~~ 554 (1019)
....++.+.+. +|...+..-.++.|.+.|..++.....+.. +. .+..
T Consensus 170 -------------------------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~ 223 (262)
T 3nol_A 170 -------------------------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSP 223 (262)
T ss_dssp -------------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSS
T ss_pred -------------------------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCc
Confidence 00112224444 666555555788999999988754322221 00 1111
Q ss_pred ccceEEEEEcCCCCEEEEEeC
Q psy307 555 AGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~ 575 (1019)
....+.|+|+|+++.|...+.
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 245789999998876665544
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.78 E-value=0.025 Score=62.08 Aligned_cols=212 Identities=9% Similarity=-0.028 Sum_probs=121.0
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
-..+.+++|.+.++.++++-...+.|..+++... ......+...-.....+++.+.+ +++.++-
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-------------~~ly~~d 95 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWTD 95 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-------------TEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-------------CeEEEEE
Confidence 3467899999976777777778899999998431 11111222222234555555433 3556666
Q ss_pred eCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcC--CeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYD--RYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~D--g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
...+.|.+.++.. ................++++|.+..++.+... +.|...++.... ...+..
T Consensus 96 ~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~------------- 160 (316)
T 1ijq_A 96 SVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVT------------- 160 (316)
T ss_dssp TTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEEC-------------
T ss_pred CCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEE-------------
Confidence 7788899998843 22222233334567889999876666555443 567777664322 111110
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEE-EecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCC
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLAC-QSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMS 568 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Las-gs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~ 568 (1019)
........++++|++..|.. -+..+.|..+|+..... ...............+++. .+.
T Consensus 161 ----------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 161 ----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp ----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTE
T ss_pred ----------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---EEEeecCCccCCcEEEEEE-CCE
Confidence 11223456778876655544 44567999999875321 1112211111345677774 345
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeee
Q psy307 569 YLISGDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 569 ~Lasgs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
++++-...+.|..+|..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 55555567788888887777665553
No 257
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.77 E-value=0.027 Score=64.09 Aligned_cols=214 Identities=10% Similarity=-0.035 Sum_probs=122.5
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
.-..+.+|+|++.++.+.++-...+.|..+++.... .....+.........+++.+.+ +++.++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~-------------~~lY~~ 176 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWT 176 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT-------------TEEEEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC-------------CceEEE
Confidence 345788999999767777777778899999884321 1112222233345566665533 256666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
-...+.|.+.++. +......+...-.....|+++|.+..|+.+.. .+.|...++........+..
T Consensus 177 d~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~------------ 243 (400)
T 3p5b_L 177 DSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------------ 243 (400)
T ss_dssp ETTTTEEEEECTT-TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS------------
T ss_pred ECCCCeEEEEeCC-CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC------------
Confidence 6677888888874 33333333334455788999987666655543 25677777654322211111
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.......+++++++..|..+ +..+.|..+|+..... .........-.....+++. .+
T Consensus 244 ------------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~-~~ 301 (400)
T 3p5b_L 244 ------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-ED 301 (400)
T ss_dssp ------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECSSTTSSEEEEEEE-TT
T ss_pred ------------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEe-CC
Confidence 11234567777766555544 4567899999875422 1222221111335566663 33
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 568 SYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 568 ~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
.++++-...+.|..+|..+|+.+..+..
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 4444555567888888777777666653
No 258
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.011 Score=68.22 Aligned_cols=242 Identities=11% Similarity=0.086 Sum_probs=129.0
Q ss_pred CeEEEEEcC-CCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 337 GISAIRWFP-KSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 337 ~V~~i~fsp-d~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
....|+++| +++. |+.+...+.|+.+|+.. .. +..+.........|+|+++|. .++++...++
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~-~~-v~~~~~~~~~P~~ia~d~~G~-------------~lyvad~~~~ 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK-EY-VSTVYSGLSKVRTICWTHEAD-------------SMIITNDQNN 201 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT-TE-EEEEECCCSCEEEEEECTTSS-------------EEEEEECCSC
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC-CE-EEEEecCCCCcceEEEeCCCC-------------EEEEEeCCCC
Confidence 457789998 3444 55444448899999843 33 333333445577888888873 2333333222
Q ss_pred ----cEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 416 ----RVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 416 ----~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
.+.+.+..........+.. ......++++| +|..+++-..++.|..+|..++.........
T Consensus 202 ~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~------------- 267 (430)
T 3tc9_A 202 NDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ------------- 267 (430)
T ss_dssp TTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-------------
T ss_pred cccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-------------
Confidence 2333333221111122221 23356678999 6666666556788999998765432111110
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCc-ccccceeEEecc------cc-------c
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNR-FKLNRKKTFEGH------MV-------A 555 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~-~~~~~~~~l~gh------~~-------~ 555 (1019)
.......++++|+|++| ++-...+.|..++.... ..+.....+.+. .. -
T Consensus 268 ----------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 331 (430)
T 3tc9_A 268 ----------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM 331 (430)
T ss_dssp ----------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB
T ss_pred ----------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe
Confidence 01223467888888844 44456778888876532 111111222221 00 0
Q ss_pred cceE-EEEEc--------CCCCEEEEEeCCCeEEEEeCCCCceeeeeec----c----C---------CCEEEEEEcCCC
Q psy307 556 GYAC-SLDFS--------PDMSYLISGDADGKCYIWDWKTTKLFKKWKA----H----D---------GVCISTLWHPHE 609 (1019)
Q Consensus 556 ~~V~-~v~fs--------pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~----h----~---------~~V~sl~~sp~~ 609 (1019)
.... .++.. ++|.+.++=...++|+.++ .+|........ . . .....+++.|++
T Consensus 332 ~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 410 (430)
T 3tc9_A 332 HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER 410 (430)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT
T ss_pred CCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC
Confidence 1123 44543 4466666555667888888 45543332211 0 1 146889999854
Q ss_pred CcEEEEEeCCCcEEEE
Q psy307 610 PSKVVTAGWDAATAKV 625 (1019)
Q Consensus 610 ~~~l~s~s~Dg~I~iw 625 (1019)
+.++++-...++|+++
T Consensus 411 g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 411 ECFFIGDRENRRIRKI 426 (430)
T ss_dssp TEEEEEEGGGTEEEEE
T ss_pred CEEEEEECCCCeEEEE
Confidence 4566666666666654
No 259
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.72 E-value=0.012 Score=62.38 Aligned_cols=216 Identities=10% Similarity=0.118 Sum_probs=127.9
Q ss_pred eeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 330 TWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 330 ~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
.+.|-.+.+..++|+|+++.++++...++.|...|.. ++.++.+. +-....-.|++.+++ .++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g--------------~~~ 84 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDN--------------QFV 84 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTT--------------EEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCC--------------EEE
Confidence 4556667899999999877777778889999999984 55666653 112345666666665 455
Q ss_pred EEEeCCCcEEEEEccCCCe--EEEEEc------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 409 LSCSMDCRVKLWEVYKEHR--CVRTYY------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~--~~~~l~------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
++.-.++.+.++++...+. .+.... ........|+|+|.++.|+++.......||.+. |. .....
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~-----~~~~~- 157 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GL-----LSSNE- 157 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-ST-----TCSSC-
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-cc-----ccCCc-
Confidence 6655677888888755442 122221 234557899999999888877776555555543 10 00000
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCC-CEEEEEecCCeEEEEEccCcccccceeEEe-ccc----c
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNN-KWLACQSMDNKILIFSALNRFKLNRKKTFE-GHM----V 554 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~-gh~----~ 554 (1019)
..+...+. ...........+++++|.. ++++.......|.++|.... . .....+. +.. .
T Consensus 158 l~i~~~~~-------------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~-~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 158 LHISKDKA-------------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V-IGEMSLTKGSRGLSHN 222 (255)
T ss_dssp CEEEECHH-------------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E-EEEEECSTTGGGCSSC
T ss_pred eeeecchh-------------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E-EEEEEcCCccCCcccc
Confidence 00000000 0001122346778888864 45555666678888887653 2 2222333 211 0
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDW 584 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl 584 (1019)
-...-.|+|.++|++.++ +.-..++.+.-
T Consensus 223 ~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 223 IKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred cCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 124678999999985554 66666776653
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.71 E-value=0.0066 Score=63.73 Aligned_cols=199 Identities=8% Similarity=0.033 Sum_probs=118.8
Q ss_pred cceeeeccCCC--CeEEEEEcCCCCcEEEEeeCCC--eEEEEecCCCcEEEEEecccCcc-EeEEEEcCCCCceeEEEee
Q psy307 326 TQVHTWEGHTK--GISAIRWFPKSAHLLLSCSMDC--RVKLWEVYKERRCVRTYYGHRQA-VRDICFNNTGTNFISAIRW 400 (1019)
Q Consensus 326 ~~i~~l~gH~~--~V~~i~fspd~g~lLaSgs~Dg--~I~IWdl~~~~~~~~~~~gh~~~-V~~i~fspdg~~~vs~i~~ 400 (1019)
+.+.++ -|.. -+..+.|++ +.+..+.+.+| .|+++|+. +++.+....-.... --.+.+. +
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~~~~fgeGi~~~--~--------- 74 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLE-TGRILQRAEVPPPYFGAGIVAW--R--------- 74 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETT-TCCEEEEEECCTTCCEEEEEEE--T---------
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECC-CCCEEEEEeCCCCcceeEEEEe--C---------
Confidence 445555 3443 356888876 56777777754 99999994 45555554322111 1122222 2
Q ss_pred cCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 401 FPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 401 ~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
..+......++.+.+||. .+.+.+.++...... +.++ +++..|+.+..++.|.++|..+.+.+.++......
T Consensus 75 ----~~ly~ltw~~~~v~v~D~-~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g 146 (243)
T 3mbr_X 75 ----DRLIQLTWRNHEGFVYDL-ATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG 146 (243)
T ss_dssp ----TEEEEEESSSSEEEEEET-TTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred ----CEEEEEEeeCCEEEEEEC-CcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC
Confidence 245566667899999999 566666666543322 3444 56777776667899999999999988877642110
Q ss_pred EEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec---------
Q psy307 481 YCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG--------- 551 (1019)
Q Consensus 481 ~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g--------- 551 (1019)
.. ...++.+.+. +|..++..-.++.|.+.|..++.....+.. .+
T Consensus 147 ~~-------------------------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl-~~l~~~~~~~~ 199 (243)
T 3mbr_X 147 RP-------------------------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL-QALVPDADALT 199 (243)
T ss_dssp EE-------------------------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC-GGGSTTTTSCC
T ss_pred cc-------------------------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC-CcCcccccccc
Confidence 00 0112223333 566555555678999999988754322221 11
Q ss_pred cccccceEEEEEcCCCCEEEEEe
Q psy307 552 HMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 552 h~~~~~V~~v~fspdg~~Lasgs 574 (1019)
+......+.|+++|+++.|...+
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcCCceEEEEEcCCCCEEEEEC
Confidence 11224678999999876555444
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.69 E-value=0.0056 Score=75.99 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=67.6
Q ss_pred cCCC-CeEEEEEc-CCCCcEEEEeeCCC----eEEEEecCCC-cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCC
Q psy307 333 GHTK-GISAIRWF-PKSAHLLLSCSMDC----RVKLWEVYKE-RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 333 gH~~-~V~~i~fs-pd~g~lLaSgs~Dg----~I~IWdl~~~-~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~ 405 (1019)
+|.- .+...+|| ||+..++++.+.+| +|+++|+.++ ......+. .....+.|+|||.
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~------------- 233 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHT------------- 233 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTT-------------
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCC-------------
Confidence 4443 68889999 97544555544443 5999999554 21111111 1123566666663
Q ss_pred cEEEEEeCC----CcEEEEEccCCCe-EEEEEc-cccccEeEEEEecCCCEEEEEEcC---CeEEEEECCCC
Q psy307 406 HLLLSCSMD----CRVKLWEVYKEHR-CVRTYY-GHRQAVRDICFNNTGTNFISAGYD---RYLKLWDTESG 468 (1019)
Q Consensus 406 ~~L~sgs~D----g~I~IWDl~~~~~-~~~~l~-~H~~~V~sl~fspdg~~l~S~s~D---g~I~lWDl~t~ 468 (1019)
.++++...+ ..|.++++..... ....+. ........+.|+|||++|+..+.+ ..|.++|+.++
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 333433221 3577788744321 122222 223446678999999998766533 35777887664
No 262
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.66 E-value=0.028 Score=64.81 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=131.7
Q ss_pred CeEEEEEcCC--CCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 337 GISAIRWFPK--SAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 337 ~V~~i~fspd--~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
....|+|.|+ .+.++++ ...+.|+.+|.. .+. +..+.........++++++| +++++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~-~g~-v~~~~~~~~~P~giavd~dG--------------~lyVad~~~ 202 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFV-NQY-VDIKTTNIGQCADVNFTLNG--------------DMVVVDDQS 202 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETT-TTE-EEEECCCCSCEEEEEECTTC--------------CEEEEECCS
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECC-CCE-EEEeecCCCCccEEEECCCC--------------CEEEEcCCC
Confidence 4678999984 4554444 433899999983 333 33444444567888888888 333333211
Q ss_pred ---Cc-EEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCC
Q psy307 415 ---CR-VKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDE 489 (1019)
Q Consensus 415 ---g~-I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~ 489 (1019)
.. +...+..........+. .-.....++++| +|..+++-..++.|..+|..++.....+....
T Consensus 203 ~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----------- 270 (433)
T 4hw6_A 203 SDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----------- 270 (433)
T ss_dssp CTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-----------
T ss_pred CcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-----------
Confidence 11 22222211111011111 223345678999 66666665567889999988776532221000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCc-ccccceeEEecc-c------------c
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNR-FKLNRKKTFEGH-M------------V 554 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~-~~~~~~~~l~gh-~------------~ 554 (1019)
.......++++|+|++|. +-...+.|+.++.... ..+.....+.+. . .
T Consensus 271 -----------------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 333 (433)
T 4hw6_A 271 -----------------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGAR 333 (433)
T ss_dssp -----------------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSB
T ss_pred -----------------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceE
Confidence 001112588999998554 4455678999886521 111111122221 0 0
Q ss_pred ccceEEEEE---------cCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc------------------CCCEEEEEEcC
Q psy307 555 AGYACSLDF---------SPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH------------------DGVCISTLWHP 607 (1019)
Q Consensus 555 ~~~V~~v~f---------spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h------------------~~~V~sl~~sp 607 (1019)
-.....+++ .++|.+.++-...++|+.++. +|... ++-+. -....++++.|
T Consensus 334 ~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 334 LWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp CSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred EcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 123667899 778877777777789999984 55433 33221 01367888884
Q ss_pred CCCcEEEEEeCCCcEEEE
Q psy307 608 HEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iw 625 (1019)
.++.++++-...++|+++
T Consensus 412 ~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp TTTEEEEEEGGGTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 343566665556666554
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.65 E-value=0.089 Score=58.56 Aligned_cols=235 Identities=7% Similarity=-0.084 Sum_probs=128.2
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
.+..+|.+..+ .+.++++- ...|+..++... .....+.+ ...+..++|.+ ..+.++++-...
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~--~~~I~~i~~~g~-~~~~~~~~-~~~~~~l~~d~-------------~~~~ly~~D~~~ 94 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFAN--RIDIRQVLPHRS-EYTLLLNN-LENAIALDFHH-------------RRELVFWSDVTL 94 (349)
T ss_dssp TTSSCEEESSS-CCEEEEEC--BSCEEEECTTSC-CEEEEECS-CSCEEEEEEET-------------TTTEEEEEETTT
T ss_pred CCCCccccccc-CceeEeec--ccceEEEeCCCC-eeEEeecC-CCceEEEEEec-------------cccEEEEEeccC
Confidence 34456666555 34444432 345777776332 22222222 22345555554 334566666677
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
+.|..+++.... ..............+++.+.+..| ++-...+.|.+.++........+..
T Consensus 95 ~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~----------------- 156 (349)
T 3v64_C 95 DRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------------- 156 (349)
T ss_dssp TEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-----------------
T ss_pred CceEEEecCCCC-ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC-----------------
Confidence 889989884332 222233333445778888765554 4444567888888764432221111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~La 571 (1019)
.......++++|.+..| ++-... +.|..+++..... ..+.. ..-.....++++|++..|.
T Consensus 157 -------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~-~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 157 -------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----RIIAD-THLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp -------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EESCC-SSCSCEEEEEEETTTTEEE
T ss_pred -------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----EEEEE-CCCCCcceEEEeCCCCEEE
Confidence 11233566777754444 444444 7888888765421 11111 1124578999998777666
Q ss_pred EEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 572 SGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 572 sgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.++ ..+.|..+|+........+...-....++++. ++.++++-...+.|..+
T Consensus 219 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 219 WVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEE
Confidence 555 45789999987543333333333456777773 33456665566667655
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.65 E-value=0.003 Score=77.15 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=68.1
Q ss_pred EEEEcCCCCcEEEEeeCCC-----------eEEEEecCCCc-EEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCc
Q psy307 340 AIRWFPKSAHLLLSCSMDC-----------RVKLWEVYKER-RCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAH 406 (1019)
Q Consensus 340 ~i~fspd~g~lLaSgs~Dg-----------~I~IWdl~~~~-~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~ 406 (1019)
++++.|.++.+++.|+.++ .+.+||..... ..+..+. .+.....++++..++ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--------------~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--------------Q 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--------------C
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--------------C
Confidence 4566664578888887543 58889885432 1111121 122223345555555 6
Q ss_pred EEEEEeC-CCcEEEEEccCCCeEEEEEcccc-ccEeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCceE
Q psy307 407 LLLSCSM-DCRVKLWEVYKEHRCVRTYYGHR-QAVRDICFNNTGTNFISAG-YD-----RYLKLWDTESGECI 471 (1019)
Q Consensus 407 ~L~sgs~-Dg~I~IWDl~~~~~~~~~l~~H~-~~V~sl~fspdg~~l~S~s-~D-----g~I~lWDl~t~~~i 471 (1019)
+++.|+. ++.+.+||..+.. ....-..+. ..-.+++..++|+.++.|+ .+ ..+.+||..+++-.
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~-W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDS-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTE-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEeCCCCCCceEEecCcCCc-eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 7777774 5689999985432 222111111 1123446667899998888 44 56999999887643
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.64 E-value=0.0018 Score=79.27 Aligned_cols=250 Identities=8% Similarity=0.025 Sum_probs=140.0
Q ss_pred cEEEEeeCCCeEEEEecCCCcEEEEEecccC-ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCcEEEEE
Q psy307 349 HLLLSCSMDCRVKLWEVYKERRCVRTYYGHR-QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCRVKLWE 421 (1019)
Q Consensus 349 ~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~-~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~I~IWD 421 (1019)
..++.++.|+.|..+|..+ ++.+..+.... .....+..+| .+ . ...++.++. +|.|..+|
T Consensus 118 ~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P-------~v----~-~~~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAP-------RV----V-KGKVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp TEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCC-------EE----E-TTEEEECCBCTTTCCBCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCC-------EE----E-CCEEEEeCCCCCcCCCCEEEEEE
Confidence 4678888999999999844 44454443211 0000000000 00 0 134444433 58999999
Q ss_pred ccCCCeEEEEEccc-------------------------------cccEeEEEEecCCCEEEEEEcCC------------
Q psy307 422 VYKEHRCVRTYYGH-------------------------------RQAVRDICFNNTGTNFISAGYDR------------ 458 (1019)
Q Consensus 422 l~~~~~~~~~l~~H-------------------------------~~~V~sl~fspdg~~l~S~s~Dg------------ 458 (1019)
. .+++.+..+... ......+++++++..++.++.++
T Consensus 185 ~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~ 263 (668)
T 1kv9_A 185 A-DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGG 263 (668)
T ss_dssp T-TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred C-CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 9 445554444210 11123468888888888887766
Q ss_pred -------eEEEEECCCCceEEEEecCC-ceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC---EEEEEe
Q psy307 459 -------YLKLWDTESGECISRFTSRK-VAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK---WLACQS 527 (1019)
Q Consensus 459 -------~I~lWDl~t~~~i~~~~~~~-~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~---~Lasgs 527 (1019)
.|..+|..+|+.+..+.... .... . . ....+....+..+|+ .++.++
T Consensus 264 gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd-------------~--------~-~~~~~~~~d~~~~G~~~~~v~~~~ 321 (668)
T 1kv9_A 264 GDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD-------------F--------T-ATQQITLAELNIDGKPRKVLMQAP 321 (668)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSC-------------C--------C-CCSCEEEEEEEETTEEEEEEEECC
T ss_pred CCceeeeeEEEEcCCCCceeeEeecCCCcccc-------------c--------c-CCCCcEEEEeccCCcEEEEEEEEC
Confidence 39999999999888776421 0000 0 0 000111112223554 688889
Q ss_pred cCCeEEEEEccCccccccee--------EEeccc------------ccc-----------ceEEEEEcCCCCEEEEE---
Q psy307 528 MDNKILIFSALNRFKLNRKK--------TFEGHM------------VAG-----------YACSLDFSPDMSYLISG--- 573 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~~~~~~--------~l~gh~------------~~~-----------~V~~v~fspdg~~Lasg--- 573 (1019)
.+|.++++|..++..+.... .+.... ... .-..++++|+..+++..
T Consensus 322 ~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~ 401 (668)
T 1kv9_A 322 KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQE 401 (668)
T ss_dssp TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccc
Confidence 99999999988875431110 000000 000 00125778876665541
Q ss_pred ---------------------------------eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 574 ---------------------------------DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 574 ---------------------------------s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
..+|.|..||+.+++.+-....+. +.....+...+ .+++.++.||
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~g-g~vf~g~~dg 479 (668)
T 1kv9_A 402 VPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAG-NLVFQGTAAG 479 (668)
T ss_dssp CCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTS
T ss_pred cceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCC-CEEEEECCcc
Confidence 134889999999999987776443 22333334445 4788889999
Q ss_pred cEEEEeccceeeeeeec
Q psy307 621 ATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 621 ~I~iwwd~~i~ki~~e~ 637 (1019)
.++. +|...+++....
T Consensus 480 ~l~a-~d~~tG~~l~~~ 495 (668)
T 1kv9_A 480 QMHA-YSADKGEALWQF 495 (668)
T ss_dssp EEEE-EETTTCCEEEEE
T ss_pred cchh-hhhhcChhheEe
Confidence 9855 566655555433
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.60 E-value=0.019 Score=60.83 Aligned_cols=212 Identities=8% Similarity=0.056 Sum_probs=123.3
Q ss_pred ecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc-cccccEeEEEEecCCCEEEE
Q psy307 375 YYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY-GHRQAVRDICFNNTGTNFIS 453 (1019)
Q Consensus 375 ~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~-~H~~~V~sl~fspdg~~l~S 453 (1019)
+.+-...+..+++.|++ +.++++...++.|...|.. ++.++.+. +-....-.|++.+++.++++
T Consensus 22 l~g~~~~lSGla~~~~~-------------~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQS-------------NTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CTTCCSCEEEEEEETTT-------------TEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred CCCcccCcceeEEeCCC-------------CEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEE
Confidence 44444456666666554 3566677788888888884 55666553 22356788899888876666
Q ss_pred EEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEE
Q psy307 454 AGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKIL 533 (1019)
Q Consensus 454 ~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~ 533 (1019)
.-.++.+.++++.....+.... .+.+ + ....+.......++++|.++.|.++.......
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~------~~~~-~--------------~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILK------KIKI-P--------------LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEE------EEEC-C--------------CSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred ECCCCcEEEEEcCCCCeeeeee------eecc-c--------------cccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 5567788888876543221111 0000 0 00112334577899999998777777666555
Q ss_pred EEEccCcccccceeEEec-----cccccceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeeeeccC---------C
Q psy307 534 IFSALNRFKLNRKKTFEG-----HMVAGYACSLDFSPDM-SYLISGDADGKCYIWDWKTTKLFKKWKAHD---------G 598 (1019)
Q Consensus 534 iwd~~~~~~~~~~~~l~g-----h~~~~~V~~v~fspdg-~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~---------~ 598 (1019)
+|.............+.. ......+.+++++|.. .+++.......|.++|.. |+.+..+.-.. .
T Consensus 146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~ 224 (255)
T 3qqz_A 146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIK 224 (255)
T ss_dssp EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCC
T ss_pred EEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccC
Confidence 555542100001111111 0111236789999954 456666677789999965 55655543221 2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 599 VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 599 ~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.--++++.++|. ++++ +..+.++++
T Consensus 225 qpEGia~d~~G~-lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 225 QAEGVAMDASGN-IYIV-SEPNRFYRF 249 (255)
T ss_dssp SEEEEEECTTCC-EEEE-ETTTEEEEE
T ss_pred CCCeeEECCCCC-EEEE-cCCceEEEE
Confidence 568999999984 4444 555554443
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.57 E-value=0.0037 Score=77.57 Aligned_cols=197 Identities=9% Similarity=0.009 Sum_probs=107.7
Q ss_pred cEeEEEEc-CCCCceeEEEeecCCCCcEEEEEeCCC----cEEEEEccCC-CeEEEEEccccccEeEEEEecCCCEEEEE
Q psy307 381 AVRDICFN-NTGTNFISAIRWFPKSAHLLLSCSMDC----RVKLWEVYKE-HRCVRTYYGHRQAVRDICFNNTGTNFISA 454 (1019)
Q Consensus 381 ~V~~i~fs-pdg~~~vs~i~~~p~~~~~L~sgs~Dg----~I~IWDl~~~-~~~~~~l~~H~~~V~sl~fspdg~~l~S~ 454 (1019)
.+...+|| |||. .++++.+.+| .|+++|+..+ ......+. ....+++|+|||+.|+..
T Consensus 175 ~~~~~~~S~PDG~-------------~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-------------LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTTTTC-------------EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCCCCC-------------EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEE
Confidence 56778888 8884 2333444333 4999999554 31111111 123467999999988877
Q ss_pred EcCC-----eEEEEECCCCce--EEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 455 GYDR-----YLKLWDTESGEC--ISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 455 s~Dg-----~I~lWDl~t~~~--i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
+.|. .|.++++.++.. ...+.. ........+.|+|||++|+..+
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-----------------------------~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSEDVCLYEE-----------------------------HNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGGCEEEEEC-----------------------------CCTTCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCCCEEEEEECCCCchhcEEEEec-----------------------------CCCceEEEEEECCCCCEEEEEe
Confidence 7652 577777765531 111110 1111234577899999888766
Q ss_pred c---CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeee-eeccCC-
Q psy307 528 M---DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD----GKCYIWDWKTTKLFKK-WKAHDG- 598 (1019)
Q Consensus 528 ~---Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D----G~I~IWDl~t~~~l~~-l~~h~~- 598 (1019)
. ...|.++|+.++........+.... .+...++.|+.++.+++....+ ..|..+|+.++..... +-.|..
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~ 368 (751)
T 2xe4_A 290 QSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSED 368 (751)
T ss_dssp ECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSS
T ss_pred cCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCC
Confidence 3 3478888887642100002222211 1334455555444455555443 3677788765322233 333433
Q ss_pred -CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 599 -VCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 599 -~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+.++.+. +..++++...+|...++
T Consensus 369 ~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 369 VFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred cEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 34555554 54677888888866543
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.53 E-value=0.024 Score=67.82 Aligned_cols=194 Identities=13% Similarity=-0.027 Sum_probs=101.2
Q ss_pred cEEEEEccCCCeEEEEEcc--cc--------ccEeEEEEecCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCceE-
Q psy307 416 RVKLWEVYKEHRCVRTYYG--HR--------QAVRDICFNNTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVAY- 481 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~--H~--------~~V~sl~fspdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~- 481 (1019)
.|..+|.. +++.+..+.. |. .++. +....+|+ .++.++.+|.+.++|..+|+.+..+.....+.
T Consensus 273 ~v~Ald~~-tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecC-CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 58888984 4555554432 21 2221 22224674 56778889999999999999988776543110
Q ss_pred EEEEecC-CCeeee-c-c--CCCceeeeCCC---CCcccEEEEcCCCCEEEEEe--------------------------
Q psy307 482 CVKFHPD-EDKQHL-D-I--PVDMKYIADPT---MHSMPAVTSSPNNKWLACQS-------------------------- 527 (1019)
Q Consensus 482 ~v~~~p~-~~~~~~-~-~--~~~~~~i~~~~---~~~i~~v~~spdg~~Lasgs-------------------------- 527 (1019)
.-...+. +..... . . +.....+..+. ...-..++++|+..++++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 0011100 000000 0 0 00000011110 11113456677666665543
Q ss_pred -----------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc
Q psy307 528 -----------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH 596 (1019)
Q Consensus 528 -----------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h 596 (1019)
.+|.|..||+.++...... ... ..+.+..+...+..++.++.||.|+.||.++|+.+.+++..
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~---~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTK---WEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEE---EES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEe---cCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 3478999998877443222 111 11111122224567778999999999999999999888754
Q ss_pred CCC-EEEEEEcCCCCcEEEEEe
Q psy307 597 DGV-CISTLWHPHEPSKVVTAG 617 (1019)
Q Consensus 597 ~~~-V~sl~~sp~~~~~l~s~s 617 (1019)
... -..+.+..++..++++.+
T Consensus 505 ~~~~~~p~~~~~~G~~yv~~~~ 526 (571)
T 2ad6_A 505 SGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp SCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcEeeeEEEEECCEEEEEEEC
Confidence 321 112234455643443333
No 269
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.49 E-value=0.036 Score=60.98 Aligned_cols=208 Identities=8% Similarity=-0.020 Sum_probs=119.9
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.+.+++|.+.++.+..+-...+.|..+++.........+...-.....+++.+. .+.+.++-...+.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-------------~g~ly~~d~~~~~ 102 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-------------GEKLYWTDSETNR 102 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT-------------TTEEEEEETTTTE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC-------------CCeEEEEECCCCE
Confidence 567899998767777787788899999985432111111111223445555543 3356666667788
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
|.++++.... ..............|++.|.+..|+.+.. .+.|...++..........
T Consensus 103 I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~------------------- 162 (318)
T 3sov_A 103 IEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------------------- 162 (318)
T ss_dssp EEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-------------------
T ss_pred EEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-------------------
Confidence 9999884322 22223344456788999987666655543 4667766664322111111
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
........++++|++..|. +-+..+.|..+|+..... .....+. ......+++.. +.++.+-
T Consensus 163 -----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~--~~~P~glav~~-~~lywtd 225 (318)
T 3sov_A 163 -----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGS--LPHPFALTLFE-DILYWTD 225 (318)
T ss_dssp -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSC--CSCEEEEEEET-TEEEEEE
T ss_pred -----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce---EEEecCC--CCCceEEEEeC-CEEEEEe
Confidence 1112335677887555544 445667899999875321 1122212 14456777753 3444455
Q ss_pred eCCCeEEEEeCCCCceeeeee
Q psy307 574 DADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 574 s~DG~I~IWDl~t~~~l~~l~ 594 (1019)
...+.|..++..+|+....+.
T Consensus 226 ~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 226 WSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCeEEEEECCCCCceEEEe
Confidence 566788888887777665554
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.48 E-value=0.084 Score=65.37 Aligned_cols=211 Identities=10% Similarity=-0.043 Sum_probs=117.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc---EEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER---RCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~---~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
....+.+|+|.+..+.++++-...+.|+.+++.... .....+.........|++.+.+ +++.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~-------------~~LY~t 488 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-------------SNIYWT 488 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-------------TEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC-------------CcEEEE
Confidence 445778999998767777777778899999884321 1122222223344556555544 356666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPD 488 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~ 488 (1019)
-...+.|.+.++. +......+.........|+++|.+.+|+.+.. . +.|.+.++........+..
T Consensus 489 D~~~~~I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~------------ 555 (791)
T 3m0c_C 489 DSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------------ 555 (791)
T ss_dssp ETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS------------
T ss_pred ecCCCeEEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC------------
Confidence 6777889999984 33333333334456789999997666655543 2 5677777754332222211
Q ss_pred CCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCC
Q psy307 489 EDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDM 567 (1019)
Q Consensus 489 ~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg 567 (1019)
.......|++++.+..|+.. ...+.|..+++..... ...+.....-.....|++. +
T Consensus 556 ------------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~--~ 612 (791)
T 3m0c_C 556 ------------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF--E 612 (791)
T ss_dssp ------------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE--T
T ss_pred ------------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEe--C
Confidence 11234456777655555444 4556888888865422 2222221111234456653 3
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeeee
Q psy307 568 SYLISG-DADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 568 ~~Lasg-s~DG~I~IWDl~t~~~l~~l 593 (1019)
.+|+.. ...+.|...|..+|+.+..+
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 344433 34567777776666655544
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.46 E-value=0.053 Score=61.32 Aligned_cols=233 Identities=7% Similarity=-0.078 Sum_probs=125.4
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.-+|.+..+ .+.++++ ....|+..++... ....... ....+..++|.+ ..+.++++-...+.
T Consensus 78 ~~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~-------------~~~~ly~~D~~~~~ 139 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFA--NRIDIRQVLPHRS-EYTLLLN-NLENAIALDFHH-------------RRELVFWSDVTLDR 139 (386)
T ss_dssp SSCEEECSS-CCEEEEE--CBSCEEEECTTSC-CCEEEEC-SCSCEEEEEEET-------------TTTEEEEEETTTTE
T ss_pred CCeECCccc-cceeEee--cCccceeeccCCC-cEEEEec-CCCccEEEEEec-------------CCCeEEEEeCCCCc
Confidence 344555444 2333333 3356777777332 2222222 223345555554 33456666667788
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeec
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLD 495 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~ 495 (1019)
|..+++... .....+.........+++.+.+..|+ +-...+.|.+.++........+..
T Consensus 140 I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~------------------- 199 (386)
T 3v65_B 140 ILRANLNGS-NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ------------------- 199 (386)
T ss_dssp EEEEETTSC-CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS-------------------
T ss_pred EEEEecCCC-CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-------------------
Confidence 999988433 23233333333456778887655544 444456777777654332221111
Q ss_pred cCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 496 IPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 496 ~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.......++++|.+..|... ... +.|..+++..... ....... -.....++++|++..|+.+
T Consensus 200 -----------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~--~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 200 -----------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADTH--LFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp -----------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEECSS--CSCEEEEEEEGGGTEEEEE
T ss_pred -----------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc---EEEEECC--CCCeeeEEEeCCCCEEEEE
Confidence 11233566777755544443 344 6888888765421 1111111 2457899999877766655
Q ss_pred e-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 574 D-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 574 s-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+ ..+.|..+|+........+........++++. ++.++++-...+.|..+
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 264 DAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEE
Confidence 4 45789999986543333333333456777773 33566666566667555
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.45 E-value=0.14 Score=63.66 Aligned_cols=260 Identities=7% Similarity=-0.029 Sum_probs=147.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec-------ccCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY-------GHRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~-------gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
..|.++...++ +.+. .|+.+ -+.+||.... ....... -....|.++...++| .|
T Consensus 211 ~~i~~i~~d~~-g~lw-igt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g---------------~l 271 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIW-IGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDN---------------KL 271 (781)
T ss_dssp SSEEEEEECTT-CCEE-EEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTS---------------EE
T ss_pred CceeEEEEcCC-CCEE-EEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCC---------------CE
Confidence 46888888774 4444 34445 5888987332 2221111 123457777777666 46
Q ss_pred EEEeCCCcEEEEEccCCCeEEEEEc--------------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE
Q psy307 409 LSCSMDCRVKLWEVYKEHRCVRTYY--------------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 409 ~sgs~Dg~I~IWDl~~~~~~~~~l~--------------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~ 474 (1019)
..|+..+-|.++|.... ....... -....|.++...++|. |..|+.++-|..++..++......
T Consensus 272 Wigt~~~Gl~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~ 349 (781)
T 3v9f_A 272 WIATELNGIMILDLQQN-QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWS 349 (781)
T ss_dssp EEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC
T ss_pred EEEeCCCCeEEECCCCC-eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeec
Confidence 66777567888887432 2211111 1345799999988876 566777888999998766543321
Q ss_pred e----------cCCceEEEEEecCCCeeeeccCCCcee-------ee------CCCCCcccEEEEcCCCCEEEEEecCCe
Q psy307 475 T----------SRKVAYCVKFHPDEDKQHLDIPVDMKY-------IA------DPTMHSMPAVTSSPNNKWLACQSMDNK 531 (1019)
Q Consensus 475 ~----------~~~~v~~v~~~p~~~~~~~~~~~~~~~-------i~------~~~~~~i~~v~~spdg~~Lasgs~Dg~ 531 (1019)
. ....+.++...+++..-+-........ .. ......|.++...++|.+ .+|+.++-
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~G 428 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGN 428 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEE
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCC
Confidence 1 124567777666544222110111100 00 112345777877777764 45777778
Q ss_pred EEEEEccCcccccceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc-----CCCEEEEEE
Q psy307 532 ILIFSALNRFKLNRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH-----DGVCISTLW 605 (1019)
Q Consensus 532 I~iwd~~~~~~~~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h-----~~~V~sl~~ 605 (1019)
|..++..++. ...+.. ......|.++...++|.+.+ |+. +-|..||..+++........ ...|.++..
T Consensus 429 l~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 429 ISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp EEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred EEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 8889876542 112211 11225688899888887555 444 45889998876653322222 357889988
Q ss_pred cCCCCcEEEEEeCCCcEEEE
Q psy307 606 HPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 606 sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.+++. |..|+.++.+.++
T Consensus 503 d~~g~--lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 503 DSEGR--FWIGTFGGGVGIY 520 (781)
T ss_dssp CTTCC--EEEEESSSCEEEE
T ss_pred cCCCC--EEEEEcCCCEEEE
Confidence 88773 4445553345454
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.45 E-value=0.013 Score=70.16 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=104.9
Q ss_pred CcEEEEEccCCCeEEEEEc--ccc--------ccEeEEEEe-cCCC---EEEEEEcCCeEEEEECCCCceEEEEecCCce
Q psy307 415 CRVKLWEVYKEHRCVRTYY--GHR--------QAVRDICFN-NTGT---NFISAGYDRYLKLWDTESGECISRFTSRKVA 480 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~--~H~--------~~V~sl~fs-pdg~---~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v 480 (1019)
+.|..+|.. +++.+..+. .|. .++. +... .+|+ .++.++.+|.+.++|.++|+.+..+.....+
T Consensus 291 ~~v~AlD~~-TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPS-SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTT-TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred ceEEEEeCC-CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 579999984 455555543 232 1221 1221 4674 6788999999999999999999887754311
Q ss_pred E-EEEEecCCCeeeec---c--------CCCceeeeCCC---CCcccEEEEcCCCCEEEEEe------------------
Q psy307 481 Y-CVKFHPDEDKQHLD---I--------PVDMKYIADPT---MHSMPAVTSSPNNKWLACQS------------------ 527 (1019)
Q Consensus 481 ~-~v~~~p~~~~~~~~---~--------~~~~~~i~~~~---~~~i~~v~~spdg~~Lasgs------------------ 527 (1019)
. .-...+........ . +........+. ...-..++++|+...+++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 1 00111110000000 0 00000011110 11122455666554444432
Q ss_pred ---------------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q psy307 528 ---------------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 528 ---------------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~ 592 (1019)
.+|.|.-||+.++........ ......+. ....+.+++.|+.||.++.||.++|+.+..
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagglvf~g~~dg~l~A~D~~tG~~lW~ 522 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE-HLPLWAGV-----LATAGNLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE-SSCCCSCC-----EEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecC-CCCCcccc-----eEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence 257899999988754322221 11111111 112466788899999999999999999998
Q ss_pred eeccCCCE-EEEEEcCCCCcEEEEEeC
Q psy307 593 WKAHDGVC-ISTLWHPHEPSKVVTAGW 618 (1019)
Q Consensus 593 l~~h~~~V-~sl~~sp~~~~~l~s~s~ 618 (1019)
++...+.. .-+.+..+|..+|++.+.
T Consensus 523 ~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 523 FQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ecCCCCcccCceEEEECCEEEEEEEcc
Confidence 87644321 124555666555554443
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.36 E-value=0.073 Score=66.17 Aligned_cols=260 Identities=7% Similarity=-0.021 Sum_probs=150.0
Q ss_pred CCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc----------cCccEeEEEEcCCCCceeEEEeecCC
Q psy307 334 HTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG----------HRQAVRDICFNNTGTNFISAIRWFPK 403 (1019)
Q Consensus 334 H~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g----------h~~~V~~i~fspdg~~~vs~i~~~p~ 403 (1019)
....|.++...++ + .|..|+.++-|..++..... ...+.. ....|.++...++|
T Consensus 311 ~~~~v~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g------------ 374 (781)
T 3v9f_A 311 SNASARYIFQDSF-N-NIWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQG------------ 374 (781)
T ss_dssp SSSCEEEEEECSS-C-CEEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTS------------
T ss_pred CCCeEEEEEEeCC-C-CEEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCC------------
Confidence 3467999988775 3 36667777788888874322 122210 23457777776665
Q ss_pred CCcEEEEEeCCCcEEEEEccCCCeEEEEE----ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe---c
Q psy307 404 SAHLLLSCSMDCRVKLWEVYKEHRCVRTY----YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT---S 476 (1019)
Q Consensus 404 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l----~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~---~ 476 (1019)
.|..|+.++-|..||... .. ...+ ......|.++...++|.. ..|+.++-|..+|..+++...... .
T Consensus 375 ---~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~ 448 (781)
T 3v9f_A 375 ---KLWIGTDGGGINVFENGK-RV-AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNE 448 (781)
T ss_dssp ---CEEEEEBSSCEEEEETTE-EE-EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTC
T ss_pred ---CEEEEeCCCcEEEEECCC-Ce-EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCC
Confidence 366777777788888732 21 1111 123467899988877764 457777789999988776433221 1
Q ss_pred CCceEEEEEecCCCeeee--------ccCC-CceeeeCCC-----CCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc
Q psy307 477 RKVAYCVKFHPDEDKQHL--------DIPV-DMKYIADPT-----MHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~--------~~~~-~~~~i~~~~-----~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
...+.++...+++..-+. +... ......... ...+.++...++|.+. +|+.++-|..||..+..
T Consensus 449 ~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~- 526 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQL- 526 (781)
T ss_dssp CCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCE-
T ss_pred CCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCe-
Confidence 245666666555432211 1111 111111111 3457788888888755 45554457778876531
Q ss_pred ccceeEEec--cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeecc----CCCEEEEEEcCCCCcEEEEE
Q psy307 543 LNRKKTFEG--HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAH----DGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 543 ~~~~~~l~g--h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h----~~~V~sl~~sp~~~~~l~s~ 616 (1019)
...+.. ......|.++...++|.+.++. .+|.|..||..+++. ..+... ...|.++...++|. |..+
T Consensus 527 ---~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~--lW~~ 599 (781)
T 3v9f_A 527 ---VRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGN--IWAS 599 (781)
T ss_dssp ---EEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSC--EEEE
T ss_pred ---EEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCC--EEEE
Confidence 122221 1123568899999999866654 477658899877653 333221 23577888887773 4555
Q ss_pred eCCCcEEEE
Q psy307 617 GWDAATAKV 625 (1019)
Q Consensus 617 s~Dg~I~iw 625 (1019)
+.+| |..+
T Consensus 600 t~~G-l~~~ 607 (781)
T 3v9f_A 600 TNTG-ISCY 607 (781)
T ss_dssp CSSC-EEEE
T ss_pred cCCc-eEEE
Confidence 5565 4343
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.35 E-value=0.024 Score=62.05 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=99.9
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEc------------------cccccEeEEEEecCCCEEEEEEcCCeEEEEECCC
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYY------------------GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~------------------~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t 467 (1019)
.+++++..++.|..||............ .....+.++++.+++..|+.+...+.|..+|..+
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC
Confidence 5677888899999998743222111111 0123578899997333555565556688888765
Q ss_pred CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC-CCCEEEEEec-----------------C
Q psy307 468 GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP-NNKWLACQSM-----------------D 529 (1019)
Q Consensus 468 ~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp-dg~~Lasgs~-----------------D 529 (1019)
+... .+... ..+ ........+++.+ +|.+.++-.. +
T Consensus 111 g~~~-~~~~~---------~~~----------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 111 GHAT-QLATS---------VDG----------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EECE-EEESE---------ETT----------------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CEEE-Eeccc---------CCC----------------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 5321 11110 000 0012234577777 7766555432 3
Q ss_pred CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc--eeeeeeccCCCEEEEEEc
Q psy307 530 NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTK--LFKKWKAHDGVCISTLWH 606 (1019)
Q Consensus 530 g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~--~l~~l~~h~~~V~sl~~s 606 (1019)
+.|..||..++... ....+- .....++++|+|++|+.+ +..+.|.+|++.... ....+....+ ...+++.
T Consensus 165 g~v~~~d~~~~~~~---~~~~~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d 237 (322)
T 2fp8_A 165 GRLIKYDPSTKETT---LLLKEL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN 237 (322)
T ss_dssp EEEEEEETTTTEEE---EEEEEE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred ceEEEEeCCCCEEE---EeccCC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence 67888887654211 111111 235579999999976655 456899999987532 1122211223 6788999
Q ss_pred CCCCcEEEEEe
Q psy307 607 PHEPSKVVTAG 617 (1019)
Q Consensus 607 p~~~~~l~s~s 617 (1019)
++|. ++++..
T Consensus 238 ~~G~-l~va~~ 247 (322)
T 2fp8_A 238 ADGH-FWVSSS 247 (322)
T ss_dssp TTSC-EEEEEE
T ss_pred CCCC-EEEEec
Confidence 9884 555443
No 276
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.35 E-value=0.045 Score=65.64 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=49.6
Q ss_pred CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCE-EEEEEcC
Q psy307 529 DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVC-ISTLWHP 607 (1019)
Q Consensus 529 Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V-~sl~~sp 607 (1019)
.|.|.-||+.++........ ......+. ....|.+|+.|+.||.|+.||.++|+.+.+++...+.+ .-+.+..
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~ 525 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH 525 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred cCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence 47888888887744322211 11111111 12256678889999999999999999998887544321 1234445
Q ss_pred CCCcEEEEEe
Q psy307 608 HEPSKVVTAG 617 (1019)
Q Consensus 608 ~~~~~l~s~s 617 (1019)
+|..++++.+
T Consensus 526 ~G~qyv~~~~ 535 (599)
T 1w6s_A 526 KGTQYVAIYY 535 (599)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 5644554443
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.35 E-value=0.073 Score=58.65 Aligned_cols=259 Identities=8% Similarity=-0.001 Sum_probs=136.0
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC 411 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg 411 (1019)
..+.+|.|.+. +..++ ++.+|.|... . ..++.-.... .....+.+|.+.+ + ..++ +
T Consensus 36 ~~~~~v~~~~~-~~~~~-~G~~g~i~~s-~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~--------------~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDR-HHGWL-VGVNATLMET-R-DGGQTWEPRTLVLDHSDYRFNSVSFQG-N--------------EGWI-V 95 (327)
T ss_dssp SCEEEEEESSS-SCEEE-EETTTEEEEE-S-STTSSCEECCCCCSCCCCEEEEEEEET-T--------------EEEE-E
T ss_pred CcEEEEEECCC-CcEEE-EcCCCeEEEe-C-CCCCCCeECCCCCCCCCccEEEEEecC-C--------------eEEE-E
Confidence 36889998764 55666 4567765332 2 2222111111 1233466666654 2 3333 3
Q ss_pred eCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--cCCceEEEEEe
Q psy307 412 SMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--SRKVAYCVKFH 486 (1019)
Q Consensus 412 s~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--~~~~v~~v~~~ 486 (1019)
+.+|.|.. ....++.-.... .+.+.+..|.+.+++..++ ++.++.|.. ....|+.-.... ....+..+.+.
T Consensus 96 g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 96 GEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS 171 (327)
T ss_dssp EETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred ECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence 44554332 223232222221 2345577788877766555 445665432 222343333332 23456788888
Q ss_pred cCCCeeeeccCCCc-----------eeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEec-ccc
Q psy307 487 PDEDKQHLDIPVDM-----------KYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEG-HMV 554 (1019)
Q Consensus 487 p~~~~~~~~~~~~~-----------~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h~~ 554 (1019)
|++...++...... ..+.......+..+.+.+++..++ .+.+|.+++.+...+........ . -..
T Consensus 172 ~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~--~~~~~ 248 (327)
T 2xbg_A 172 PSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLS--PLRRN 248 (327)
T ss_dssp TTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBC--TTSSC
T ss_pred CCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccC--CcccC
Confidence 87665544321111 112223345567888889887664 45678887764332322211110 1 001
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeec---cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKA---HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~---h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+.++.+.+++.++++|. +|.| ++....|+.-..+.. +...+.++.|.+++ .++++|.+|.|..+
T Consensus 249 ~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 249 SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRY 318 (327)
T ss_dssp CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEE
T ss_pred CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEE
Confidence 12477889998888777664 6766 455555655554442 23567888887543 58888899988665
No 278
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.33 E-value=0.079 Score=57.55 Aligned_cols=225 Identities=9% Similarity=-0.016 Sum_probs=119.1
Q ss_pred CCCCCCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeC-CC-eEEEEecCCCcE
Q psy307 293 PTDYQGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSM-DC-RVKLWEVYKERR 370 (1019)
Q Consensus 293 ~~~~~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~-Dg-~I~IWdl~~~~~ 370 (1019)
..+.+|+.+++-...+.|..++.... ....+. -.+.+.++++.++ ++++++... ++ .|..++... ++
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~--------~~~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~-g~ 106 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSD-GT 106 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCC--------EEEEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTT-SC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCc--------eEEEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCC-Ce
Confidence 35668888887767777777764421 111121 2346889999996 555555433 22 455566533 22
Q ss_pred EEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---------cccccEe
Q psy307 371 CVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---------GHRQAVR 440 (1019)
Q Consensus 371 ~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---------~H~~~V~ 440 (1019)
...... ........++..+++ ..+++-..++.|.++|.......+.... ..-...+
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~--------------~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLSDT--------------QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp EEEEEECTTCSCEEEEEESSSS--------------EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred EEEEEeCCCccccCcccccCCC--------------cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 221111 111112233322222 3444544688888888733211121111 1112344
Q ss_pred EEEEecCCCEEEEE-EcCCeEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 441 DICFNNTGTNFISA-GYDRYLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 441 sl~fspdg~~l~S~-s~Dg~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
.| +++++.|+.+ +..+.|..+|+.. +.. .. ..+ +.. ......+++++
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~-~~~----------------------~~~--~~~P~gi~vd~ 221 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GE-PEI----------------------FVE--QTNIDDFAFDV 221 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CC-CEE----------------------EEE--SCCCSSEEEBT
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----Cc-cEE----------------------Eec--cCCCCCeEECC
Confidence 45 7788765544 4567888888764 221 00 000 000 01234688899
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc---CCCCEEEEEeCCC
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS---PDMSYLISGDADG 577 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs---pdg~~Lasgs~DG 577 (1019)
+|+++++....+.|.+++.... . ..+..+. .....+++++|. ||++.|+.++..+
T Consensus 222 dG~l~va~~~~~~V~~~~~~G~-~-~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPDRS-T-TIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTTCC-E-EEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCCCC-E-EEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9988777777889999987532 1 1111111 112457899998 8988777666544
No 279
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.31 E-value=0.021 Score=68.48 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=43.4
Q ss_pred cEEEEEeCCCcEEEEEccCCCeEEEEEcccc----ccEeE-EEEecCCCEEEEEE------cCCeEEEEECCCCceEEEE
Q psy307 406 HLLLSCSMDCRVKLWEVYKEHRCVRTYYGHR----QAVRD-ICFNNTGTNFISAG------YDRYLKLWDTESGECISRF 474 (1019)
Q Consensus 406 ~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~----~~V~s-l~fspdg~~l~S~s------~Dg~I~lWDl~t~~~i~~~ 474 (1019)
.+|+.++.|+.|..+|..++. .+....... ..+.+ ..+. ++ .++.++ .++.|+-+|.++|+.+..+
T Consensus 122 ~rV~v~t~dg~l~AlDa~TG~-~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 122 ALILKTQLDGNVAALNAETGE-TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp CEEEEECTTSEEEEEETTTCC-EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCC-EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 348888999999999985444 443332211 01111 1121 44 455554 3899999999999999887
Q ss_pred ecC
Q psy307 475 TSR 477 (1019)
Q Consensus 475 ~~~ 477 (1019)
...
T Consensus 199 ~~~ 201 (599)
T 1w6s_A 199 YAT 201 (599)
T ss_dssp ESS
T ss_pred cCC
Confidence 654
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.30 E-value=0.23 Score=54.21 Aligned_cols=216 Identities=10% Similarity=-0.069 Sum_probs=119.2
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~ 434 (1019)
..|+..|+... .....+. .......++|.+.+ +.++++-...+.|..+++... ......+..
T Consensus 10 ~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~-------------~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTT-------------TEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCCc-ceEehhc-CCCceEEEEEEeCC-------------CEEEEEECCCCcEEEEECCCCCCCcccEEEEeC
Confidence 45788887432 2222222 22345556665543 356666667789999988431 122222332
Q ss_pred ccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 435 HRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
.-.....+++++.+..| ++-...+.|.+.|+........+.. .......
T Consensus 75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~------------------------------~~~~P~~ 124 (316)
T 1ijq_A 75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------NGSKPRA 124 (316)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------------TTCCEEE
T ss_pred CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC------------------------------CCCCcce
Confidence 33456788888755554 4445677888888764432221111 1123346
Q ss_pred EEEcCCCCEEEEEec-C-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcee
Q psy307 514 VTSSPNNKWLACQSM-D-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 514 v~~spdg~~Lasgs~-D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l 590 (1019)
++++|.+..|+.... . +.|..+++.... ...+... .-.....++++|++..|+.++ ..+.|..+|+.... .
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~ 198 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-R 198 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCCCC----eEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-e
Confidence 677775554444433 3 688888876432 1222111 124578999999877776665 45689999987433 3
Q ss_pred eee-ec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy307 591 KKW-KA--HDGVCISTLWHPHEPSKVVTAGWDAATAKVQ 626 (1019)
Q Consensus 591 ~~l-~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iww 626 (1019)
..+ .. .-....++++. ++.++++-...++|..+.
T Consensus 199 ~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 199 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEe
Confidence 333 21 12345677774 335666666667776654
No 281
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.26 E-value=0.087 Score=58.76 Aligned_cols=62 Identities=13% Similarity=-0.020 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------eeeeeccCCCEEEEEEcCCCCcEEEEE-eCCC
Q psy307 557 YACSLDFSPDMSYLISGDADGKCYIWDWKTTKL------FKKWKAHDGVCISTLWHPHEPSKVVTA-GWDA 620 (1019)
Q Consensus 557 ~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~------l~~l~~h~~~V~sl~~sp~~~~~l~s~-s~Dg 620 (1019)
....++| .+|.++++.-..+.|...++..... ...+-...+.+.++++.|+|. ++++. +.+|
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~~~~~g 337 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTTSNRDG 337 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEECSTTT
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEEeCCCC
Confidence 3567777 4677666666667788877764431 122222235789999999984 44443 4444
No 282
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.22 E-value=0.05 Score=65.06 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=134.2
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecc--cCc--cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC------CCcE
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYG--HRQ--AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM------DCRV 417 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h~~--~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~------Dg~I 417 (1019)
+..++.++.|+.|..+|..+ ++.+..... +.. .+.+ +| .+ . ...++.++. ++.|
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~---~P-------~v----~-~g~v~vg~~~~~~~~~g~v 178 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQ---AP-------FV----A-KDTVLMGCSGAELGVRGAV 178 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCS---CC-------EE----E-TTEEEEECBCGGGTCCCEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceecc---CC-------EE----E-CCEEEEEecCCccCCCCEE
Confidence 34678888899999999844 444443321 110 1110 00 00 0 134555554 7999
Q ss_pred EEEEccCCCeEEEEEcccccc--------------------------------------EeEEEEecCCCEEEEEEcC--
Q psy307 418 KLWEVYKEHRCVRTYYGHRQA--------------------------------------VRDICFNNTGTNFISAGYD-- 457 (1019)
Q Consensus 418 ~IWDl~~~~~~~~~l~~H~~~--------------------------------------V~sl~fspdg~~l~S~s~D-- 457 (1019)
..+|.. +++.+..+...... ...+++.++...++.++.+
T Consensus 179 ~a~D~~-tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~ 257 (571)
T 2ad6_A 179 NAFDLK-TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPA 257 (571)
T ss_dssp EEEETT-TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred EEEECC-CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCc
Confidence 999994 44444443221100 0235677766666665532
Q ss_pred --------------CeEEEEECCCCceEEEEecCCc-eEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCC-
Q psy307 458 --------------RYLKLWDTESGECISRFTSRKV-AYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNK- 521 (1019)
Q Consensus 458 --------------g~I~lWDl~t~~~i~~~~~~~~-v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~- 521 (1019)
+.|..+|..+|+.+..++.... .. + .+.. .....+....+|+
T Consensus 258 ~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~------d---------------~~~~-~~p~l~~~~~~G~~ 315 (571)
T 2ad6_A 258 PWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW------D---------------FAGV-NQMVLTDQPVNGKM 315 (571)
T ss_dssp CSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS------C---------------CCCC-CCCEEEEEEETTEE
T ss_pred cccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc------c---------------cccC-CCCEEEecccCCcE
Confidence 3689999999998877654210 00 0 0000 0011112224663
Q ss_pred --EEEEEecCCeEEEEEccCcccccceeEEec-c--------ccccce--------------------------EEEEEc
Q psy307 522 --WLACQSMDNKILIFSALNRFKLNRKKTFEG-H--------MVAGYA--------------------------CSLDFS 564 (1019)
Q Consensus 522 --~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~g-h--------~~~~~V--------------------------~~v~fs 564 (1019)
.++.++.+|.+.++|..++..+.... +.. . ....++ ..++++
T Consensus 316 ~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d 394 (571)
T 2ad6_A 316 TPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD 394 (571)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC
Confidence 57778889999999988774432211 100 0 000000 235788
Q ss_pred CCCCEEEEEe-------------------------------------CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcC
Q psy307 565 PDMSYLISGD-------------------------------------ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHP 607 (1019)
Q Consensus 565 pdg~~Lasgs-------------------------------------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp 607 (1019)
|+..+|+..+ .+|.|..||+.+++.+.++.... .+.+.....
T Consensus 395 p~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t 473 (571)
T 2ad6_A 395 PESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT 473 (571)
T ss_dssp TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE
T ss_pred CCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE
Confidence 8877776653 35789999999999887775432 222222222
Q ss_pred CCCcEEEEEeCCCcEEEEeccceeeeee
Q psy307 608 HEPSKVVTAGWDAATAKVQDANIVKIAV 635 (1019)
Q Consensus 608 ~~~~~l~s~s~Dg~I~iwwd~~i~ki~~ 635 (1019)
.+ .+++.++.||.++.+ |...+++.-
T Consensus 474 ~g-g~v~~g~~dg~l~a~-D~~tG~~lw 499 (571)
T 2ad6_A 474 KG-GLVWYATLDGYLKAL-DNKDGKELW 499 (571)
T ss_dssp TT-TEEEEECTTSEEEEE-ETTTCCEEE
T ss_pred CC-CEEEEEcCCCeEEEE-ECCCCCEEE
Confidence 34 367778999998654 555555543
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.16 E-value=0.089 Score=62.96 Aligned_cols=59 Identities=19% Similarity=-0.009 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEEeccceeeeeeec
Q psy307 576 DGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKVQDANIVKIAVEM 637 (1019)
Q Consensus 576 DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iwwd~~i~ki~~e~ 637 (1019)
+|.|.-||+.+++.+-+...+. ++.+-.....+ .+++.++.||.++. +|...++++-..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A-~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKA-FDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEE-EETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEE-EECCCCCEEEEe
Confidence 6889999999999887765432 22111111224 47888999998855 466666655443
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.13 E-value=0.075 Score=58.61 Aligned_cols=205 Identities=11% Similarity=0.196 Sum_probs=120.4
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeC---CCcEEEEEccC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSM---DCRVKLWEVYK 424 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~---Dg~I~IWDl~~ 424 (1019)
..+++.....+-+.++|+ .++.+..+.. +.++.+..-|.- ...-..-.++++... +++|.+|++..
T Consensus 40 ~s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~-------~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDF-------PLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GCEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEE-------EETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred ccEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEeccc-------ccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 455666677889999999 4455666653 456666554411 000000013344443 57899998843
Q ss_pred CCeEEEEEcc------cc-ccEeEEEE--ecC-CC-EEEEEEcCCeEEEEECC---CC----ceEEEEecCCceEEEEEe
Q psy307 425 EHRCVRTYYG------HR-QAVRDICF--NNT-GT-NFISAGYDRYLKLWDTE---SG----ECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 425 ~~~~~~~l~~------H~-~~V~sl~f--spd-g~-~l~S~s~Dg~I~lWDl~---t~----~~i~~~~~~~~v~~v~~~ 486 (1019)
....+..+.. .. ..+..+|+ +|. +. +++....+|.+..|++. .+ +.+++|....
T Consensus 109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-------- 180 (355)
T 3amr_A 109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-------- 180 (355)
T ss_dssp TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--------
T ss_pred CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--------
Confidence 3333444422 11 56677788 664 44 57778888999999872 22 3444444332
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcc--cccceeEEeccccccceEEEEE-
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRF--KLNRKKTFEGHMVAGYACSLDF- 563 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~~~l~gh~~~~~V~~v~f- 563 (1019)
.+..+...+....|+++-.+.-|..|+..... ....+..+.+......+..+++
T Consensus 181 -----------------------q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~ 237 (355)
T 3amr_A 181 -----------------------QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY 237 (355)
T ss_dssp -----------------------CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE
T ss_pred -----------------------CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEE
Confidence 34456667777889999988777777754221 1122222221111234667777
Q ss_pred -cCCCC-EEEEEe-CCCeEEEEeCC-CCceeeeee
Q psy307 564 -SPDMS-YLISGD-ADGKCYIWDWK-TTKLFKKWK 594 (1019)
Q Consensus 564 -spdg~-~Lasgs-~DG~I~IWDl~-t~~~l~~l~ 594 (1019)
.++|+ ||++.+ .+.++.+||.. +.+.+..+.
T Consensus 238 ~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 238 YAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp ECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 55666 666555 67799999996 667777774
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.11 E-value=0.12 Score=56.70 Aligned_cols=191 Identities=8% Similarity=-0.060 Sum_probs=105.5
Q ss_pred EeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEec
Q psy307 398 IRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 398 i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
+.|.+..+.+..+-...+.|..+++.........+...-.....+++.+.+..| ++-...+.|.++++........+..
T Consensus 40 ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~ 119 (318)
T 3sov_A 40 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ 119 (318)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence 344444446666767778888888854422112222223456678888755544 4444567888888764432221111
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe--cCCeEEEEEccCcccccceeEEecccc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS--MDNKILIFSALNRFKLNRKKTFEGHMV 554 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~~~l~gh~~ 554 (1019)
.......++++|.+..|+... ..+.|..+++..... .......
T Consensus 120 ------------------------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~~-- 164 (318)
T 3sov_A 120 ------------------------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FIIINSE-- 164 (318)
T ss_dssp ------------------------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EEEECSS--
T ss_pred ------------------------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EEEEECC--
Confidence 112234566676544444444 257888888765321 1111111
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 555 AGYACSLDFSPDMSYLISGD-ADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 555 ~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
-.....++++|++..|+.++ ..+.|..+|+........+...-....++++.. +.++++-...+.|..+
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 14578999999777666655 467899999864332222232334556777753 2456665555666444
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.18 Score=58.64 Aligned_cols=252 Identities=7% Similarity=0.014 Sum_probs=126.8
Q ss_pred CeEEEEEcCC-CCcEEEEeeCCCeEEEEecCCCcEEEEEecc---cCccEeEEEE-------cCCCCceeEEEeecCCCC
Q psy307 337 GISAIRWFPK-SAHLLLSCSMDCRVKLWEVYKERRCVRTYYG---HRQAVRDICF-------NNTGTNFISAIRWFPKSA 405 (1019)
Q Consensus 337 ~V~~i~fspd-~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g---h~~~V~~i~f-------spdg~~~vs~i~~~p~~~ 405 (1019)
....|+|.|. .++++++....+.|++.|+. .+.+...... .......|+| +++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-------------- 204 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-------------- 204 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT-TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--------------
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC-CCEEEEEEccCccccCCCcEEEEeecccccCCCC--------------
Confidence 4678999983 45555555555778888873 3333332222 1234778888 7777
Q ss_pred cEEEEEeCCC-------cEEEEEccCCCeEE-----EEEccccccEeEEEEecCCCE-EEEEEcCCeEEEEECC------
Q psy307 406 HLLLSCSMDC-------RVKLWEVYKEHRCV-----RTYYGHRQAVRDICFNNTGTN-FISAGYDRYLKLWDTE------ 466 (1019)
Q Consensus 406 ~~L~sgs~Dg-------~I~IWDl~~~~~~~-----~~l~~H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~------ 466 (1019)
..|+.+...+ .|.+.+....+... ..+... .....++++|++.. +++-..++.|..+|+.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 3344444332 25555532211111 122211 23356688995444 5555567789999986
Q ss_pred -CCceEEEEe-cC-CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcc-
Q psy307 467 -SGECISRFT-SR-KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRF- 541 (1019)
Q Consensus 467 -t~~~i~~~~-~~-~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~- 541 (1019)
++..-.... .. .... .....+.......++++|+|++| ++-+..+.|+.++.....
T Consensus 284 ~tg~~~tp~~~~~~g~~~-------------------~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFK-------------------QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp HTTCCCCCBGGGCTTTEE-------------------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred cCceeecccccccccccc-------------------eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 443200000 00 0000 00001111233568888888854 444556788886654321
Q ss_pred cccceeEEecc------cc-------ccceE-EEEEc-------CCCCEEEEEeCCCeEEEEeCCCCceeeeeecc----
Q psy307 542 KLNRKKTFEGH------MV-------AGYAC-SLDFS-------PDMSYLISGDADGKCYIWDWKTTKLFKKWKAH---- 596 (1019)
Q Consensus 542 ~~~~~~~l~gh------~~-------~~~V~-~v~fs-------pdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h---- 596 (1019)
.+.....+.+. .. -.... .++.. ++|.++++=....+|+.++ .+|. +.++-+.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccc
Confidence 11001122221 00 01233 34554 5666666666778999998 4563 4444321
Q ss_pred -----------C---------CCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 597 -----------D---------GVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 597 -----------~---------~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+ ....+|++.++++.++++=....+|+++
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 0 1356788888633455555555666554
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.02 E-value=0.28 Score=55.67 Aligned_cols=217 Identities=9% Similarity=-0.078 Sum_probs=119.9
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEc
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYY 433 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~ 433 (1019)
...|+..++.... ... +......+..++|++.+ +.+.++-...+.|..+++... ........
T Consensus 91 ~~~I~~i~l~~~~-~~~-~~~~~~~~~~l~~d~~~-------------~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 91 RHEVRKMTLDRSE-YTS-LIPNLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp TTEEEEECTTSCS-CEE-EECSCSCEEEEEEETTT-------------TEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred cceeEEEccCCcc-eeE-eccccCcceEEeeeecc-------------CceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 4678888874322 111 22233445566665543 355666666788888887432 12223333
Q ss_pred cccccEeEEEEecCCCEE-EEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 434 GHRQAVRDICFNNTGTNF-ISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l-~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
........|++.+.+..| ++-...+.|.+.++........+... .....
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~------------------------------~~~P~ 205 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------------------------------GSKPR 205 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS------------------------------SCCEE
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC------------------------------CCCcc
Confidence 344567788888755444 44445678888887655433222211 12234
Q ss_pred EEEEcCCCCEEEEEe-c-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce
Q psy307 513 AVTSSPNNKWLACQS-M-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKL 589 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~ 589 (1019)
.++++|.+.+|+... . .+.|...++..... ....... -.....+++++++..|+.++. .+.|..+|+.....
T Consensus 206 ~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 206 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred eEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 566676544444443 2 36788888765421 1112221 145789999998877776654 57899999865433
Q ss_pred eeeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 590 FKKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 l~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+.. .-....+++.. ++.++++-...+.|..+
T Consensus 281 ~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 281 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEE
T ss_pred EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEE
Confidence 322222 22345677763 33566666566677555
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.98 E-value=0.027 Score=61.58 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=103.5
Q ss_pred EEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEcc----cc--ccEeEEEE---ecCCCEEEEEEc-----------
Q psy307 397 AIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYG----HR--QAVRDICF---NNTGTNFISAGY----------- 456 (1019)
Q Consensus 397 ~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~----H~--~~V~sl~f---spdg~~l~S~s~----------- 456 (1019)
+..|++..+.++++.-..++|..||..........+.+ .. ..+..|.| .|+++.+++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 46677766677777778999999998433322223332 11 13578999 688777665432
Q ss_pred --CCeEEEEECC---CCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC-C
Q psy307 457 --DRYLKLWDTE---SGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD-N 530 (1019)
Q Consensus 457 --Dg~I~lWDl~---t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D-g 530 (1019)
+..|..+|+. +++.+......... + ...............++..++|+..++++.. +
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~-------~----------~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQ-------D----------EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHH-------H----------HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCcccc-------c----------cccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 5778889988 77665444321000 0 0000000011234567788888888888887 8
Q ss_pred eEEEEEccCcccccceeEEec--cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy307 531 KILIFSALNRFKLNRKKTFEG--HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTT 587 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~g--h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~ 587 (1019)
.|..++.... ...... +.. .......+.|+++|+|..|++....|.|.-+|+.+.
T Consensus 160 ~I~rV~pdG~-~~~~~~-~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFA-WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECTTSC-CEEEEE-ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eEEEEeCCCC-EEeeee-ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 8777776543 111110 111 001123568999999998888877999999998853
No 289
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.90 E-value=0.39 Score=53.43 Aligned_cols=224 Identities=13% Similarity=0.051 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec---ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY---GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~---gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
....+++|.|+ +. |+.+..+|.|++++. .....+..+. ........|+++|+-. .++.+.++-+
T Consensus 29 ~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~----------~~g~lyv~~~ 95 (354)
T 3a9g_A 29 EVPWSIAPLGG-GR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFP----------KKSWVYLYAS 95 (354)
T ss_dssp SCEEEEEEEET-TE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTT----------TSCEEEEEEE
T ss_pred CCCeEEEEcCC-Ce-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCC----------cCCEEEEEEe
Confidence 45788999996 55 555566799999974 2222222221 1123456677766500 0223333333
Q ss_pred C---C----CcEEEEEccCC------CeE-EEEEc-cccccEeEEEEecCCCEEEEEEc-------------CCeEEEEE
Q psy307 413 M---D----CRVKLWEVYKE------HRC-VRTYY-GHRQAVRDICFNNTGTNFISAGY-------------DRYLKLWD 464 (1019)
Q Consensus 413 ~---D----g~I~IWDl~~~------~~~-~~~l~-~H~~~V~sl~fspdg~~l~S~s~-------------Dg~I~lWD 464 (1019)
. + +.|..|+.... .+. +..+. +.......|+|.|||..+++.+. .|.|.-+|
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 2 2 45666766432 111 11122 11223467899999987776442 24566666
Q ss_pred CCCC--------c-eEEEEecCCceEEEEEec-CCCeeeeccCCC----ceee--------------------------e
Q psy307 465 TESG--------E-CISRFTSRKVAYCVKFHP-DEDKQHLDIPVD----MKYI--------------------------A 504 (1019)
Q Consensus 465 l~t~--------~-~i~~~~~~~~v~~v~~~p-~~~~~~~~~~~~----~~~i--------------------------~ 504 (1019)
.... . .+. ......+..++|+| ++...+.+.... ...+ .
T Consensus 176 ~dG~~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 176 EEGRPPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp TTSCCCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 5432 0 111 12334577889999 454433322110 0000 0
Q ss_pred CCCCCcccEEEE-------cCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 505 DPTMHSMPAVTS-------SPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 505 ~~~~~~i~~v~~-------spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.........+++ ..+|.++++....+.|...++...........+... ....+..+++.|||.+.++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 011223456666 356777777777788988888753222111222211 124588899999998666654
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.88 E-value=0.36 Score=58.17 Aligned_cols=206 Identities=8% Similarity=-0.050 Sum_probs=119.4
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
..+.+|+|++.++.+..+-..++.|..+++.... ....+.........+++...+ +++.++-...+
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~GlAvD~~~-------------~~LY~tD~~~~ 102 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGMAVDWLG-------------KNLYWADTGTN 102 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceEEEEeCC-------------CEEEEEECCCC
Confidence 4678999999877777787888999999984332 122222112234455555443 35666666678
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++..... .......-.....|++.|....|+.+.. .+.|...++........+.
T Consensus 103 ~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~------------------ 163 (628)
T 4a0p_A 103 RIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP------------------ 163 (628)
T ss_dssp EEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC------------------
T ss_pred EEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC------------------
Confidence 888888743322 2222233455688999986556555543 3566666665433221111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEEE-EEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWLA-CQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~La-sgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
.......+++++++..|. +-...+.|..+++..... ..+.... .....+++.. +.+.++
T Consensus 164 -------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v~~~~l--~~P~glav~~-~~ly~t 223 (628)
T 4a0p_A 164 -------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EVIADDL--PHPFGLTQYQ-DYIYWT 223 (628)
T ss_dssp -------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECC--SCEEEEEEET-TEEEEE
T ss_pred -------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EEeeccC--CCceEEEEEC-CEEEEe
Confidence 122345677777655444 445567899999876432 1222221 3355777754 344444
Q ss_pred EeCCCeEEEEeCCCCceeeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKWK 594 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l~ 594 (1019)
-...+.|...|..+++....+.
T Consensus 224 D~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 224 DWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCEEEEEECCCCCceEEEe
Confidence 4457889999987776544443
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.86 E-value=0.004 Score=76.50 Aligned_cols=212 Identities=9% Similarity=-0.031 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCC---cEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---RRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~---~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
..+.+|+|.+.++.++++-...+.|..+++... ......+.........|++.+ ..+.++++-.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~-------------~~g~LY~tD~ 472 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-------------IHSNIYWTDS 472 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC-------------SSSBCEECCT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe-------------eCCcEEEEec
Confidence 356788999876666666667788999988431 111111111111223444443 2335556656
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-C-CeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-D-RYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-D-g~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
..+.|.+.++. +......+.........|+++|.+.+|+.+.. . +.|.+.++..... .
T Consensus 473 ~~~~I~v~d~d-g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~------------------ 532 (699)
T 1n7d_A 473 VLGTVSVADTK-GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y------------------ 532 (699)
T ss_dssp TTSCEEEEBSS-SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C------------------
T ss_pred cCCeEEEEecC-CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e------------------
Confidence 67888888873 33222222222344567788886555444332 2 4555555432111 0
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
.+..........|+++|++..| ++-+..+.|.++++..... ...+...........+++..+ .+
T Consensus 533 -----------~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~~~P~glavd~~-~l 597 (699)
T 1n7d_A 533 -----------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFED-KV 597 (699)
T ss_dssp -----------EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC---EEECCCSSSCSSCCCCEEETT-EE
T ss_pred -----------EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce---EEEEecCCcCCCceEeEEECC-EE
Confidence 0011112334578899875544 5555667899999865321 111111111122334555443 34
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 570 LISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+++....+.|..+|..+++.+..+..
T Consensus 598 ywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEECSTTTCEEEEETTTEEEEECCCT
T ss_pred EEEeCCCCeEEEEEccCCCceEEeec
Confidence 44445567899999888887776643
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.72 E-value=0.78 Score=55.14 Aligned_cols=316 Identities=8% Similarity=-0.083 Sum_probs=147.4
Q ss_pred CCCeeeeCCCCCceeeecCCCCCCccCCccceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec
Q psy307 297 QGRSFLHPPHDVGTNLRSDTPPDRCFLPKTQVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY 376 (1019)
Q Consensus 297 ~gr~~~~~~~D~~v~lw~~~~~~~~~lp~~~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~ 376 (1019)
.|+.+++-.....|..++..+... ....+..--.....+++.+.++.+.++-...+.|.+.++..... ...+.
T Consensus 51 ~~~ly~sD~~~~~I~r~~~~g~~~------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~ 123 (619)
T 3s94_A 51 HGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFW 123 (619)
T ss_dssp TTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC
T ss_pred CCEEEEEECCCCeEEEEEccCCCc------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEe
Confidence 345555544455555554433210 11223333356889999987777777777889999999844321 11121
Q ss_pred ccCccEeEEEEcCCCCce-e------------------------------EEEeecCCCCcEEEEEeCCCcEEEEEccCC
Q psy307 377 GHRQAVRDICFNNTGTNF-I------------------------------SAIRWFPKSAHLLLSCSMDCRVKLWEVYKE 425 (1019)
Q Consensus 377 gh~~~V~~i~fspdg~~~-v------------------------------s~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~ 425 (1019)
..-.....|++.|.+..+ + .+++..+..+.+.++-+..+.|...|+. +
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G 202 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-G 202 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-C
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-C
Confidence 223334555655542211 1 1233344444444444445566666652 2
Q ss_pred CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecC-CceEEEEE-ecCCCe----eeecc--C
Q psy307 426 HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSR-KVAYCVKF-HPDEDK----QHLDI--P 497 (1019)
Q Consensus 426 ~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~-~~v~~v~~-~p~~~~----~~~~~--~ 497 (1019)
........+......+|++..+ ..+++-...+.|...|..+|+....+... ..+..+.+ +|.... ..... .
T Consensus 203 ~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~ 281 (619)
T 3s94_A 203 TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGG 281 (619)
T ss_dssp CEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGG
T ss_pred CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCc
Confidence 2211111211222345566544 33444445678999998888766555433 23444443 332110 00000 0
Q ss_pred CCceeeeCCCCCcccEEE-----EcCC--------CCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEc
Q psy307 498 VDMKYIADPTMHSMPAVT-----SSPN--------NKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFS 564 (1019)
Q Consensus 498 ~~~~~i~~~~~~~i~~v~-----~spd--------g~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fs 564 (1019)
.....+..+......|.| +.++ ..+|+.+ ..+.|+..++...........+.+ -..+..++|+
T Consensus 282 Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d 357 (619)
T 3s94_A 282 CSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYD 357 (619)
T ss_dssp CSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEE
T ss_pred ccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccc---cCccEEEEEE
Confidence 000011111100011111 1111 2234333 356777777765421111111111 1346789999
Q ss_pred CCCCEEEEE-eCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 565 PDMSYLISG-DADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 565 pdg~~Lasg-s~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+.+..|+.+ ...+.|+.+++........+...-....++++.+.++.++++-+..+.|.+.
T Consensus 358 ~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 358 PVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 865555544 4578899999876443333332223456777776554566665556666444
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.70 E-value=0.1 Score=59.92 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=91.0
Q ss_pred cEeEEEEecC--CCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCC---Cc-eeeeC------
Q psy307 438 AVRDICFNNT--GTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPV---DM-KYIAD------ 505 (1019)
Q Consensus 438 ~V~sl~fspd--g~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~---~~-~~i~~------ 505 (1019)
....|+|+|+ +..|+.+...+.|+.+|..++...........+..+++++++...+.+... .. .....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 3567899984 445555544489999999888776665555678999999998844433211 00 01000
Q ss_pred -----CCCCcccEEEEcC-CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCe
Q psy307 506 -----PTMHSMPAVTSSP-NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGK 578 (1019)
Q Consensus 506 -----~~~~~i~~v~~sp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~ 578 (1019)
........++++| +|.++++-..++.|+.++..++.... .+...........++|+|+|++|+.+. ..++
T Consensus 220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~---~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE---EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE---EEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE---EEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 0123345688999 67766666677899999987553211 111111113345799999999655554 5678
Q ss_pred EEEEeCC
Q psy307 579 CYIWDWK 585 (1019)
Q Consensus 579 I~IWDl~ 585 (1019)
|+.++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.61 E-value=0.22 Score=59.94 Aligned_cols=208 Identities=9% Similarity=0.002 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDC 415 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg 415 (1019)
+.+.+|+|++.++.++.+-...+.|..+++.........+...-.....+++.+.+ +++.++-...+
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-------------~~ly~~d~~~~ 106 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-------------EKLYWTDSETN 106 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-------------TEEEEEETTTT
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-------------CEEEEEeCCCC
Confidence 45789999997677777767778899998844321122222222456667766644 25666666778
Q ss_pred cEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeee
Q psy307 416 RVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQH 493 (1019)
Q Consensus 416 ~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~ 493 (1019)
.|.+.++.... ........-.....|++.|.+..|+.+.. .+.|...++.........
T Consensus 107 ~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~------------------- 166 (619)
T 3s94_A 107 RIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII------------------- 166 (619)
T ss_dssp EEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-------------------
T ss_pred EEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-------------------
Confidence 89999884322 22222234455678899887666555543 244554454322211111
Q ss_pred eccCCCceeeeCCCCCcccEEEEcCCCCEE-EEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEE
Q psy307 494 LDIPVDMKYIADPTMHSMPAVTSSPNNKWL-ACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 494 ~~~~~~~~~i~~~~~~~i~~v~~spdg~~L-asgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Las 572 (1019)
.........+++++++..| ++-+..+.|..+++........ ..+.. .....+++..+ ...++
T Consensus 167 -----------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~---~~~~~--~~P~gi~~~~~-~ly~t 229 (619)
T 3s94_A 167 -----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV---VKGSL--PHPFALTLFED-ILYWT 229 (619)
T ss_dssp -----------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEE
T ss_pred -----------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE---EeCCC--CCceEEEEeCC-EEEEe
Confidence 1112334567777765444 4445567888888875432211 11111 12345677555 33444
Q ss_pred EeCCCeEEEEeCCCCceeeee
Q psy307 573 GDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 573 gs~DG~I~IWDl~t~~~l~~l 593 (1019)
-...+.|...|..+++....+
T Consensus 230 d~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEEC
T ss_pred cCCCCEEEEEECCCCcccEEE
Confidence 445678999998887655444
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.59 E-value=0.12 Score=62.81 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=39.7
Q ss_pred ccEEEEcCCCCEEEEEecC-----------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC
Q psy307 511 MPAVTSSPNNKWLACQSMD-----------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA 575 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~D-----------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~ 575 (1019)
..+.+..|+|+++++|+.+ ..+.+||..+.. ......+.... ....+..+.|||+.++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-W~~~~~~~~~R--~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVR--VYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCC--CTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-eeecCCCCCcc--ccccHhhcCCCcEEEecCCC
Confidence 4456778899999999864 568999987541 11111111111 22334567799999999885
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.55 E-value=0.91 Score=49.55 Aligned_cols=219 Identities=9% Similarity=0.082 Sum_probs=119.5
Q ss_pred cCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEee---cCCCCcEEE
Q psy307 333 GHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRW---FPKSAHLLL 409 (1019)
Q Consensus 333 gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~---~p~~~~~L~ 409 (1019)
+..----+++|.+..+.++++.-..|+|..|+...+......+.+-. ..-++...++++.| .|. +.+++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s-------~~g~~~~~~sGl~~~~~D~~-grL~v 81 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS-------SNGDGEQQMSGLSLLTHDNS-KRLFA 81 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC-------CSSCCSEEEEEEEESSSSSC-CEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc-------ccCCCcceeeEEEEeccCCC-CcEEE
Confidence 33334457899886666666666899999999853322111222200 00011122334444 233 35555
Q ss_pred EEe-------------CCCcEEEEEcc---CCCeE-EEEEcccc-----------ccEeEEEEecCCCEEEEEEcC-CeE
Q psy307 410 SCS-------------MDCRVKLWEVY---KEHRC-VRTYYGHR-----------QAVRDICFNNTGTNFISAGYD-RYL 460 (1019)
Q Consensus 410 sgs-------------~Dg~I~IWDl~---~~~~~-~~~l~~H~-----------~~V~sl~fspdg~~l~S~s~D-g~I 460 (1019)
+.. .+..|..+|+. +.... ...+.... .....++..++|+..++++.- +.|
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI 161 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence 433 26779999985 23322 22232222 348899999999999999888 777
Q ss_pred EEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc
Q psy307 461 KLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR 540 (1019)
Q Consensus 461 ~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~ 540 (1019)
...+.... .+..+.... | ........+.++++|+|..|++....|.|..+|+...
T Consensus 162 ~rV~pdG~-~~~~~~~~~--------~----------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 162 ARVSADGK-TVSTFAWES--------G----------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECTTSC-CEEEEEECC--------C----------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEEeCCCC-EEeeeeecC--------C----------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 66665432 222111000 0 0112234678999999998888877999999998843
Q ss_pred ccccceeEEe--ccc-cccceEEE-EEcCCCCE-EEEEeCCCeEEEEeCCC
Q psy307 541 FKLNRKKTFE--GHM-VAGYACSL-DFSPDMSY-LISGDADGKCYIWDWKT 586 (1019)
Q Consensus 541 ~~~~~~~~l~--gh~-~~~~V~~v-~fspdg~~-Lasgs~DG~I~IWDl~t 586 (1019)
... .+. .. |.. .......+ ..-.+|+. |++.+..+.+.+.+...
T Consensus 217 v~~-~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 217 YAW-PEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp SCC-CEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cce-eec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 210 111 11 211 00112332 33347777 55555566666665443
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.50 E-value=0.44 Score=52.95 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred cEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEE--EEcc-----ccccEeEEEEec--CCC-E
Q psy307 381 AVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVR--TYYG-----HRQAVRDICFNN--TGT-N 450 (1019)
Q Consensus 381 ~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--~l~~-----H~~~V~sl~fsp--dg~-~ 450 (1019)
..-++...++|.-++++-.|.|.-+.+- ...+|.|.++|+.+...... .+.+ ..-....|.+.+ ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~--~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFD--PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccC--CCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 4556667777643333333333221111 13689999999853221111 2222 223556666655 343 3
Q ss_pred EEEEE-c--CCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEe
Q psy307 451 FISAG-Y--DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQS 527 (1019)
Q Consensus 451 l~S~s-~--Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs 527 (1019)
|+.+. . +.+|.+|++..+.....+ ...+........+.+.+.++|.+.++..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~-------------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLH-------------------------LKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEE-------------------------EEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEE-------------------------EeccccCCCCCCceEEEeCCCCEEecCC
Confidence 33332 2 345666665432111110 0011112234456677777777666553
Q ss_pred -----------------cCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cc
Q psy307 528 -----------------MDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDWKT-TK 588 (1019)
Q Consensus 528 -----------------~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl~t-~~ 588 (1019)
..|.|..+|.. .. .....+- ...+.++|||||++|+.+. ..+.|+.|++.. ++
T Consensus 184 ~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~~--~~~~~~l---~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 184 HYFIDPYLKSWEMHLGLAWSFVTYYSPN---DV--RVVAEGF---DFANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp CSCSSHHHHHHHHHTTCCCEEEEEECTT---CC--EEEEEEE---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred cEeCCcccccchhhccCCccEEEEEECC---eE--EEeecCC---cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 12455555542 11 1122222 4478999999998877665 467899999863 33
Q ss_pred e--eeeeeccCCCEEEEEEcC-CCCcEEEEEeCCC
Q psy307 589 L--FKKWKAHDGVCISTLWHP-HEPSKVVTAGWDA 620 (1019)
Q Consensus 589 ~--l~~l~~h~~~V~sl~~sp-~~~~~l~s~s~Dg 620 (1019)
+ ...+ ...+..-.++..+ +| .+.+++.++|
T Consensus 256 l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~g 288 (355)
T 3sre_A 256 LTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPNG 288 (355)
T ss_dssp EEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESCH
T ss_pred EecCEEE-eCCCCCceEEEeCCCC-cEEEEecCCc
Confidence 2 2233 2245567788887 46 4666566554
No 298
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.48 E-value=0.096 Score=60.14 Aligned_cols=152 Identities=11% Similarity=0.125 Sum_probs=90.6
Q ss_pred cEeEEEEec-CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 438 AVRDICFNN-TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 438 ~V~sl~fsp-dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
....|+++| ++..|+.+...+.|+.+|+.++......... .....+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~-------------------------------~~P~~ia~ 186 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL-------------------------------SKVRTICW 186 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC-------------------------------SCEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC-------------------------------CCcceEEE
Confidence 456779997 4555666665578888888776543332221 23345677
Q ss_pred cCCCCEEEEEec-CC----eEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcee
Q psy307 517 SPNNKWLACQSM-DN----KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 517 spdg~~Lasgs~-Dg----~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~DG~I~IWDl~t~~~l 590 (1019)
+++|++|++... ++ .+.+++...... ....+... .....++++| +|.++++-..++.|+.++..++...
T Consensus 187 d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~--~~~~l~~~---~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 187 THEADSMIITNDQNNNDRPNNYILTRESGFK--VITELTKG---QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp CTTSSEEEEEECCSCTTSEEEEEEEGGGTSC--SEEEEEEC---SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eCCCCEEEEEeCCCCcccceEEEEeCCCcee--eeeeeccC---CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 777875555443 22 344444433221 11222211 2355788999 7776666667889999999876542
Q ss_pred eeeec-cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKA-HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..... .......++|+|++..++++-...++|.++
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 22221 123467999999995456666666777665
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.21 E-value=1 Score=55.68 Aligned_cols=217 Identities=10% Similarity=-0.065 Sum_probs=116.9
Q ss_pred CCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCC---eEEEEEc
Q psy307 357 DCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEH---RCVRTYY 433 (1019)
Q Consensus 357 Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~l~ 433 (1019)
...|+..++... ...... .....+..|+|.+. .+.++++-...+.|+.+++.... .....+.
T Consensus 403 ~~~Ir~i~l~~~-~~~~l~-~~~~~~~gl~~d~~-------------~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 403 RHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVA-------------SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp BSSEEEECTTSC-CCEEEE-CSCSSEEEEEEETT-------------TTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred ccceeEeeccCC-cceeee-cCCCceEEEeeccc-------------CCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 345666666322 222222 22344555666553 33566666667888888884321 2233333
Q ss_pred cccccEeEEEEecCCCEEE-EEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCccc
Q psy307 434 GHRQAVRDICFNNTGTNFI-SAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMP 512 (1019)
Q Consensus 434 ~H~~~V~sl~fspdg~~l~-S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~ 512 (1019)
........|++.+.++.|+ +-...+.|.+.++........+.. ......
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~------------------------------~l~~P~ 517 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------NGSKPR 517 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------------------------TTCCEE
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC------------------------------CCCCcc
Confidence 3445677889988776554 444567888888865443222211 112234
Q ss_pred EEEEcCCCCEEEEEe-cC-CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce
Q psy307 513 AVTSSPNNKWLACQS-MD-NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-DGKCYIWDWKTTKL 589 (1019)
Q Consensus 513 ~v~~spdg~~Lasgs-~D-g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-DG~I~IWDl~t~~~ 589 (1019)
.|+++|.+.+|+... .. +.|.+.++..... ...+... -.....|++++.+..|+.+.. .+.|...++.....
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~---~~lv~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCce---EEEEeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 566676644444443 22 6788888765422 1122222 145789999987777766654 56899999865444
Q ss_pred eeeeecc--CCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 590 FKKWKAH--DGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 590 l~~l~~h--~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...+... -....+|+.. +..++++-...+.|...
T Consensus 593 ~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~ 628 (791)
T 3m0c_C 593 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 628 (791)
T ss_dssp EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEE
Confidence 3333321 1234566654 33455555555566544
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.20 E-value=2.8 Score=50.31 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc------cCccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG------HRQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
+.+.+|+|.+.++.++.+=...+.|+.++...... ...+.. ....+..+++...+ .++.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~glAvD~~~-------------~nLY~ 405 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDLSIDIYS-------------RYIYW 405 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEEEEETTT-------------TEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceEEeeccC-------------CeEEE
Confidence 45889999997677777767788899888743321 111211 12345666666554 25666
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEec-CCCEEEEEEcCC--eEEEEECCCCceEEEEecCCceEEEEEe
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNN-TGTNFISAGYDR--YLKLWDTESGECISRFTSRKVAYCVKFH 486 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fsp-dg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~~~~v~~v~~~ 486 (1019)
+-+..+.|.+.++. +......+........+|++.| .|.++++-.... .|...++.........
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~------------ 472 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF------------ 472 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE------------
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE------------
Confidence 76777888888873 3322223333456688999999 454455533322 3444444322211111
Q ss_pred cCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEe-ccccccceEEEEEc
Q psy307 487 PDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFE-GHMVAGYACSLDFS 564 (1019)
Q Consensus 487 p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~-gh~~~~~V~~v~fs 564 (1019)
.........+++++.++.|..+ +..+.|..+++.... .+.+. +.. ....++++.
T Consensus 473 ------------------~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~----r~~~~~~~~--~~P~glav~ 528 (628)
T 4a0p_A 473 ------------------FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN----RIVLEDSNI--LQPVGLTVF 528 (628)
T ss_dssp ------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSC--SCEEEEEEE
T ss_pred ------------------eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc----eEEEEcCCC--CCcEEEEEE
Confidence 1112344567888876666555 446789999986542 12222 211 234566654
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 565 PDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 565 pdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
. +.+..+=...+.|...|..+|+....+
T Consensus 529 ~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 529 E-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp T-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred C-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 3 333333334456666666666554444
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.11 E-value=1.5 Score=48.62 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=44.1
Q ss_pred ceEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCceeee--e-eccCCCEEEEEEcCCCCcEEEE-EeCCCcEEEE
Q psy307 557 YACSLDFSP-------DMSYLISGDADGKCYIWDWKTTKLFKK--W-KAHDGVCISTLWHPHEPSKVVT-AGWDAATAKV 625 (1019)
Q Consensus 557 ~V~~v~fsp-------dg~~Lasgs~DG~I~IWDl~t~~~l~~--l-~~h~~~V~sl~~sp~~~~~l~s-~s~Dg~I~iw 625 (1019)
.++.+.|.. +|.++++.-..+.|...++..++.... + ......+..+++.|+|. ++++ -..+|.|.++
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY-LYVLTDESSGELLKV 350 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-EEEEECSTTEEEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-EEEEEeCCCCEEEEE
Confidence 466777764 577777776778888888776544332 1 22234789999999985 5444 3356766554
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.90 E-value=0.77 Score=53.27 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred EEeecCC-CCcEEEEEeCCCcEEEEEccCCCeEEEEEccc---cccEeEEEE-------ecCCCEEEEEEcCC-------
Q psy307 397 AIRWFPK-SAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH---RQAVRDICF-------NNTGTNFISAGYDR------- 458 (1019)
Q Consensus 397 ~i~~~p~-~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H---~~~V~sl~f-------spdg~~l~S~s~Dg------- 458 (1019)
.+++.|. ..+++++....+.|++.|+ ..+......... ......|+| +++|++|+.+...+
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 3455553 3344555444567888887 444444433322 235889999 99999777666553
Q ss_pred eEEEEECCC-CceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEecCCeEEEEE
Q psy307 459 YLKLWDTES-GECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSMDNKILIFS 536 (1019)
Q Consensus 459 ~I~lWDl~t-~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~Dg~I~iwd 536 (1019)
.|.+.+... +... .. ++ ...+. .......++++|+ +.++++-..++.|..+|
T Consensus 222 ~V~~i~r~~~G~~~----~~---------~~-----------~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 222 SVYIIKRNADGTFD----DR---------SD-----------IQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEEEECCTTSCCS----TT---------SC-----------EEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred eEEEEecCCCCcee----ec---------cc-----------ceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 244554322 1110 00 00 00000 0122346788884 55566667788999999
Q ss_pred cc-------Ccccc-----c---ceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q psy307 537 AL-------NRFKL-----N---RKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKCYIWDW 584 (1019)
Q Consensus 537 ~~-------~~~~~-----~---~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I~IWDl 584 (1019)
+. ++... . ....+...........++|+|+|++|+.++ ...+|+.++.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 87 44220 0 011111111124467899999999655554 5678888654
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.88 E-value=1.1 Score=49.49 Aligned_cols=177 Identities=9% Similarity=0.148 Sum_probs=103.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEec---------------C-----CCeeeeccC---CCceee
Q psy307 447 TGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHP---------------D-----EDKQHLDIP---VDMKYI 503 (1019)
Q Consensus 447 dg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p---------------~-----~~~~~~~~~---~~~~~i 503 (1019)
....++.....+-+.++|+ +|+.++.+.. ..++.+..-| + ....++.+. .....+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 4456777777888999999 8888887764 2333333222 1 112223221 111222
Q ss_pred eC---C--C-CCcccEEEE--cCC-CC-EEEEEecCCeEEEEEccCc----ccccceeEEeccccccceEEEEEcCCCCE
Q psy307 504 AD---P--T-MHSMPAVTS--SPN-NK-WLACQSMDNKILIFSALNR----FKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 504 ~~---~--~-~~~i~~v~~--spd-g~-~Lasgs~Dg~I~iwd~~~~----~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
.. + . ...+..+|+ +|. +. ++++...+|.+..|++... .....+..+.-. +.+-.|...+...+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCe
Confidence 11 1 1 145666888 774 43 6888888999999998532 122334444432 45778899998899
Q ss_pred EEEEeCCCeEEEEeCC-----CCceeeeee-cc-CCCEEEEEE--cCCCCcEEEEEe-CCCcEEEEeccc
Q psy307 570 LISGDADGKCYIWDWK-----TTKLFKKWK-AH-DGVCISTLW--HPHEPSKVVTAG-WDAATAKVQDAN 629 (1019)
Q Consensus 570 Lasgs~DG~I~IWDl~-----t~~~l~~l~-~h-~~~V~sl~~--sp~~~~~l~s~s-~Dg~I~iwwd~~ 629 (1019)
|+.+-.+.-|..++.. +++.+..+. ++ ...+..++. .+++..+|++++ .+++. .+++..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~-~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY-AIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE-EEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE-EEEECC
Confidence 9999998777777754 345565543 22 236788877 455543455555 45455 555553
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.80 E-value=0.51 Score=52.37 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred ccEEEEcCCCCEEEEEecCCeEEEEEccCccc---ccceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 511 MPAVTSSPNNKWLACQSMDNKILIFSALNRFK---LNRKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~---~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
...+++ .+|.++++....+.|...++..... ......+... ...+..+++.|||.+.++..
T Consensus 270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--SCCEEEEEECTTSCEEEEEC
T ss_pred CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc--CCCeeEEEECCCCcEEEEEe
Confidence 445666 4677777766777888887764421 1111222111 25688999999998766654
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.80 E-value=0.58 Score=51.27 Aligned_cols=194 Identities=8% Similarity=-0.013 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeE-EEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRV-KLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMD 414 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I-~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~D 414 (1019)
+.+.+|.+.++ +.+++++ .+|.| +-+|--..... ...++...+..+.+.+++ .+++.+ .+
T Consensus 122 ~~~~~i~~~~~-~~~~~~~-~~g~v~~S~DgG~tW~~--~~~~~~~~~~~~~~~~~~--------------~~~~~g-~~ 182 (327)
T 2xbg_A 122 GSPRLIKALGN-GSAEMIT-NVGAIYRTKDSGKNWQA--LVQEAIGVMRNLNRSPSG--------------EYVAVS-SR 182 (327)
T ss_dssp SCEEEEEEEET-TEEEEEE-TTCCEEEESSTTSSEEE--EECSCCCCEEEEEECTTS--------------CEEEEE-TT
T ss_pred CCeEEEEEECC-CCEEEEe-CCccEEEEcCCCCCCEE--eecCCCcceEEEEEcCCC--------------cEEEEE-CC
Confidence 45677877664 5555555 45544 33332111222 223445567778777766 445444 34
Q ss_pred CcEE-EEEc-cCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 415 CRVK-LWEV-YKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 415 g~I~-IWDl-~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
|.+. -+|- -..-..+ -......+..+.+.++++.+ .++.+|.+.+++...|+.-..+... .
T Consensus 183 G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~----------~---- 245 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSP----------L---- 245 (327)
T ss_dssp SSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCT----------T----
T ss_pred CcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCC----------c----
Confidence 4433 3332 0111222 23455678889999888654 5667787777643222211111000 0
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc-ccccceEEEEEcCCCCEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH-MVAGYACSLDFSPDMSYLI 571 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh-~~~~~V~~v~fspdg~~La 571 (1019)
......+..+.+.+++..++++. +|.| .+....+... ..+... .....+.++.|.+++. ++
T Consensus 246 ------------~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW---~~~~~~~~~~~~~~~v~~~~~~~-~~ 307 (327)
T 2xbg_A 246 ------------RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW---QQDVDVKKVPSNFYKILFFSPDQ-GF 307 (327)
T ss_dssp ------------SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC---EECGGGTTSSSCCCEEEEEETTE-EE
T ss_pred ------------ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc---EEcCccCCCCCCeEEEEEECCCc-eE
Confidence 00112355677777777666654 6766 3444444222 222211 0113456788876655 55
Q ss_pred EEeCCCeEEEEe
Q psy307 572 SGDADGKCYIWD 583 (1019)
Q Consensus 572 sgs~DG~I~IWD 583 (1019)
+++.+|.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 566788877665
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.72 E-value=3 Score=46.13 Aligned_cols=222 Identities=8% Similarity=-0.012 Sum_probs=117.1
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEc---cccccEeEEEEecC---CCEEEE
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYY---GHRQAVRDICFNNT---GTNFIS 453 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~---~H~~~V~sl~fspd---g~~l~S 453 (1019)
.....++|.|+| . |+.+..+|.|++++. .....+..+. ........|+++|+ +..|+.
T Consensus 29 ~~P~~ia~~pdG--------------~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 29 EVPWSIAPLGGG--------------R-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp SCEEEEEEEETT--------------E-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCeEEEEcCCC--------------e-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 345678888887 3 555666799998874 2222222221 12356889999997 445544
Q ss_pred EEc----C----CeEEEEECCCC--c-----eE-EEEec--CCceEEEEEecCCCeeeeccCC------------Ccee-
Q psy307 454 AGY----D----RYLKLWDTESG--E-----CI-SRFTS--RKVAYCVKFHPDEDKQHLDIPV------------DMKY- 502 (1019)
Q Consensus 454 ~s~----D----g~I~lWDl~t~--~-----~i-~~~~~--~~~v~~v~~~p~~~~~~~~~~~------------~~~~- 502 (1019)
+.. + ..|..|+...+ . .+ ..+.. ......+.|.|++...+..-.. ..+.
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence 432 3 56777876654 1 11 11221 1235678999988644331100 0111
Q ss_pred eeCCC------------------CCcccEEEEcC-CCCEEEEEecCC---eEEEEEccCcc--c-----------cccee
Q psy307 503 IADPT------------------MHSMPAVTSSP-NNKWLACQSMDN---KILIFSALNRF--K-----------LNRKK 547 (1019)
Q Consensus 503 i~~~~------------------~~~i~~v~~sp-dg~~Lasgs~Dg---~I~iwd~~~~~--~-----------~~~~~ 547 (1019)
...+. ......++|+| +|.++++-...+ .|.+....... . .....
T Consensus 173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence 11111 12245788888 566555443222 24433221100 0 01111
Q ss_pred EEeccccccceEEEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-cee--eeee-ccCCCEEEEEEcCCCCcEEEEE
Q psy307 548 TFEGHMVAGYACSLDFS-------PDMSYLISGDADGKCYIWDWKTT-KLF--KKWK-AHDGVCISTLWHPHEPSKVVTA 616 (1019)
Q Consensus 548 ~l~gh~~~~~V~~v~fs-------pdg~~Lasgs~DG~I~IWDl~t~-~~l--~~l~-~h~~~V~sl~~sp~~~~~l~s~ 616 (1019)
.+. + ....+..++|. .+|.++++.-..+.|...++... +.. ..+- .....+.++++.|+| .++++.
T Consensus 253 ~~~-~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~ 329 (354)
T 3a9g_A 253 DTG-S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILIST 329 (354)
T ss_dssp ECT-T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEE
T ss_pred ecC-C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEE
Confidence 120 1 11347788883 57777777767788888888753 332 2222 224578999999998 455554
Q ss_pred e-CCC
Q psy307 617 G-WDA 620 (1019)
Q Consensus 617 s-~Dg 620 (1019)
. .+|
T Consensus 330 ~~~~G 334 (354)
T 3a9g_A 330 SNRDG 334 (354)
T ss_dssp CTTSS
T ss_pred eCCCC
Confidence 3 344
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.71 E-value=1.6 Score=48.39 Aligned_cols=73 Identities=11% Similarity=0.244 Sum_probs=46.9
Q ss_pred cccEEEEcCCCCEEEEE-ecCCeEEEEEccCcccccceeEEeccccccceEEEEEcC-CCCEEEEEeCC-CeEEEEeCC
Q psy307 510 SMPAVTSSPNNKWLACQ-SMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSP-DMSYLISGDAD-GKCYIWDWK 585 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fsp-dg~~Lasgs~D-G~I~IWDl~ 585 (1019)
..+.++|+||++.|..+ +..+.|..|++.....+.....+.. .+..-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 34578899999777665 4678999999864323333334421 25677899999 59877766544 345555543
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.42 E-value=6 Score=51.04 Aligned_cols=185 Identities=7% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCcEEEEEe----------CCCcEEEEEccCCCeEEEEE-ccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEE
Q psy307 404 SAHLLLSCS----------MDCRVKLWEVYKEHRCVRTY-YGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECIS 472 (1019)
Q Consensus 404 ~~~~L~sgs----------~Dg~I~IWDl~~~~~~~~~l-~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~ 472 (1019)
...+|+.|. ..|.|.++++. ..+..... ....++|++++-- +| +|++| ...+|++|++...+.+.
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~-~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYS-DGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEE-TTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEE-CCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE
Confidence 346777776 35889999995 33332222 2346888888744 45 45444 45899999997665433
Q ss_pred EEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc
Q psy307 473 RFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH 552 (1019)
Q Consensus 473 ~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh 552 (1019)
.. + ... ..+..+.+...++++++|..-..|.++..+.. ...+..+..+
T Consensus 919 -~~------~-~~~----------------------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~~~a~D 966 (1158)
T 3ei3_A 919 -TE------C-NHY----------------------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFEEIARD 966 (1158)
T ss_dssp -EE------E-EEC----------------------CCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEEEEEEC
T ss_pred -EE------e-ecc----------------------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEEEEEee
Confidence 11 0 000 01222233335778888887777766654322 1233444444
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CceeeeeeccC-CCEEEEE---EcCCC--------CcE
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKT--------TKLFKKWKAHD-GVCISTL---WHPHE--------PSK 612 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t--------~~~l~~l~~h~-~~V~sl~---~sp~~--------~~~ 612 (1019)
....+++++.+-.++ .++.++.+|.|.+..... .++...-.-|- ..|+++. +.+.+ ...
T Consensus 967 ~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~ 1045 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS 1045 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEE
T ss_pred cccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccce
Confidence 455778888887554 677799999999987643 12222222333 3566664 33322 235
Q ss_pred EEEEeCCCcEEEE
Q psy307 613 VVTAGWDAATAKV 625 (1019)
Q Consensus 613 l~s~s~Dg~I~iw 625 (1019)
++-++.+|.|..+
T Consensus 1046 il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1046 VLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEecCCEEEEE
Confidence 7778888888765
No 309
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.33 E-value=4.4 Score=44.68 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=116.1
Q ss_pred ceeeeccCCCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcE-EEEEe----cccCccEeEEEEcCCCCceeEEEeec
Q psy307 327 QVHTWEGHTKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERR-CVRTY----YGHRQAVRDICFNNTGTNFISAIRWF 401 (1019)
Q Consensus 327 ~i~~l~gH~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~-~~~~~----~gh~~~V~~i~fspdg~~~vs~i~~~ 401 (1019)
.+.++-..-...+.|+|.|+ +.++++--..|.|++++...... .+..+ .........|+++|+-.
T Consensus 23 ~~~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~--------- 92 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA--------- 92 (347)
T ss_dssp EEEEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH---------
T ss_pred eeEEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc---------
Confidence 34444444557789999996 67666655589999998632221 22222 12234567777777410
Q ss_pred CCCCcEEEEE--eCCCcEEEEEccCC---------CeE-EEEEc-cccccEeEEEEecCCCEEEEEEc------------
Q psy307 402 PKSAHLLLSC--SMDCRVKLWEVYKE---------HRC-VRTYY-GHRQAVRDICFNNTGTNFISAGY------------ 456 (1019)
Q Consensus 402 p~~~~~L~sg--s~Dg~I~IWDl~~~---------~~~-~~~l~-~H~~~V~sl~fspdg~~l~S~s~------------ 456 (1019)
.++.+.++- ..++.|.-|.+... .+. +..+. +....-..|.|.|||.++++.+.
T Consensus 93 -~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~ 171 (347)
T 3das_A 93 -SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKS 171 (347)
T ss_dssp -HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTC
T ss_pred -cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCC
Confidence 011222221 23344555554321 111 22222 12233467899999988777552
Q ss_pred -CCeEEEEECCCCc-------eEEEEe-cCCceEEEEEecCCCeeeeccCCC----ceeee-------------------
Q psy307 457 -DRYLKLWDTESGE-------CISRFT-SRKVAYCVKFHPDEDKQHLDIPVD----MKYIA------------------- 504 (1019)
Q Consensus 457 -Dg~I~lWDl~t~~-------~i~~~~-~~~~v~~v~~~p~~~~~~~~~~~~----~~~i~------------------- 504 (1019)
-|.|.-.+....- ....+. ....+..++|+|++.....+.... ...+.
T Consensus 172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~ 251 (347)
T 3das_A 172 LGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF 251 (347)
T ss_dssp STTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred CCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence 2455545544220 001122 345677899999765444322110 00000
Q ss_pred -------CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccccc-ceeEEeccccccceEEEEEcCCCCEEEEEe
Q psy307 505 -------DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN-RKKTFEGHMVAGYACSLDFSPDMSYLISGD 574 (1019)
Q Consensus 505 -------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~-~~~~l~gh~~~~~V~~v~fspdg~~Lasgs 574 (1019)
.++......++|. +|..+...-..+.|....+....... ....+.+. .+.+..|+..|||.++++.+
T Consensus 252 ~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~--~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 252 HDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE--YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT--SSCEEEEEEEETTEEEEEEC
T ss_pred cCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC--CCCccEEEECCCCcEEEEEc
Confidence 0000122344554 35555555556667666665432111 11222222 25688899999988666543
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.19 E-value=11 Score=48.52 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCeEEEEEcCCC-----CcEEEEeeC-CCeEEEEecCCCcEEEEEec-ccCccEeEEEEcCCCCceeEEEeecCCCCcE
Q psy307 335 TKGISAIRWFPKS-----AHLLLSCSM-DCRVKLWEVYKERRCVRTYY-GHRQAVRDICFNNTGTNFISAIRWFPKSAHL 407 (1019)
Q Consensus 335 ~~~V~~i~fspd~-----g~lLaSgs~-Dg~I~IWdl~~~~~~~~~~~-gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~ 407 (1019)
.+.|+|+++.|.. +.+++.|.. |++|+|+++.. .+.+.... +......++.+.. + .+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~----------~--~~~~~ 619 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTT----------F--ESSHY 619 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEE----------E--TTEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEE----------e--CCCcE
Confidence 4579999998642 478999997 99999999953 33332211 1112233333221 1 12257
Q ss_pred EEEEeCCCcEEEEEcc
Q psy307 408 LLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 408 L~sgs~Dg~I~IWDl~ 423 (1019)
|..|-.||.+.-+.+.
T Consensus 620 L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEEEETTSEEEEEEEC
T ss_pred EEEEeCCCeEEEEEEc
Confidence 8899999998776664
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.79 E-value=1.7 Score=48.87 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=78.2
Q ss_pred cccEEEEcCCCCEEEEEecCCeEEEEEccCccccc---------ceeEEecc----ccccceEEEEEcCC---CCEEEEE
Q psy307 510 SMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLN---------RKKTFEGH----MVAGYACSLDFSPD---MSYLISG 573 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~---------~~~~l~gh----~~~~~V~~v~fspd---g~~Lasg 573 (1019)
.+..+..+|+|++||..+ +..|.|..+-.+.... ..+.+.-. .....|..+.|+|- |..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999998886 5688888776321100 11222211 12367999999994 5689999
Q ss_pred eCCCeEEEEeCCCC--ceeeeee---------ccCCCEEEEEEcCCCCcEEEEEe--CCCcEEEEecc
Q psy307 574 DADGKCYIWDWKTT--KLFKKWK---------AHDGVCISTLWHPHEPSKVVTAG--WDAATAKVQDA 628 (1019)
Q Consensus 574 s~DG~I~IWDl~t~--~~l~~l~---------~h~~~V~sl~~sp~~~~~l~s~s--~Dg~I~iwwd~ 628 (1019)
..|+.|++||+... ++. .++ .....|.+++|.+++ ..|...+ .+|.|+-++..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAlcP~ 211 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAFYPF 211 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEESSC
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEECCC
Confidence 99999999999752 122 222 122568899999965 6666644 88899877544
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.69 E-value=3.7 Score=45.38 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=40.8
Q ss_pred cccEEEEcC-------CCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEe-CCCeE
Q psy307 510 SMPAVTSSP-------NNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGD-ADGKC 579 (1019)
Q Consensus 510 ~i~~v~~sp-------dg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs-~DG~I 579 (1019)
....+++.. +|.++++....+.|...++..+..... ..+-. .....+..+++.|||.+.++.+ .+|.|
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTED-GRILT-DRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE-EEESG-GGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeee-EEccc-CCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 445566643 577777777788888888875422111 12211 1124688999999998666543 34543
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.61 E-value=8.3 Score=44.19 Aligned_cols=110 Identities=8% Similarity=0.100 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCc-EEEEEecc------cCccEeEEEEcCCCCceeEEEeecCCCCcEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKER-RCVRTYYG------HRQAVRDICFNNTGTNFISAIRWFPKSAHLL 408 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~-~~~~~~~g------h~~~V~~i~fspdg~~~vs~i~~~p~~~~~L 408 (1019)
....+|+|.|+ +.++++-...+.|++++..... ..+..+.. .......|+|+|+-. .++.+.
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~----------~~g~lY 95 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK----------NNPYIY 95 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT----------TSCEEE
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC----------cCCEEE
Confidence 35679999996 6666654444578888753222 22222221 134455677776410 022333
Q ss_pred EEEeC------------CCcEEEEEccCCC------e-EEEEEc-cccccEeEEEEecCCCEEEEEEc
Q psy307 409 LSCSM------------DCRVKLWEVYKEH------R-CVRTYY-GHRQAVRDICFNNTGTNFISAGY 456 (1019)
Q Consensus 409 ~sgs~------------Dg~I~IWDl~~~~------~-~~~~l~-~H~~~V~sl~fspdg~~l~S~s~ 456 (1019)
++-+. ...|.-|++.... + .+..+. ........|+|.|||.++++.+.
T Consensus 96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 33322 1245555542211 1 111122 12245788999999988776553
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.19 E-value=0.09 Score=64.40 Aligned_cols=216 Identities=8% Similarity=-0.091 Sum_probs=105.7
Q ss_pred CeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC---CeEEEEEcc
Q psy307 358 CRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE---HRCVRTYYG 434 (1019)
Q Consensus 358 g~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~l~~ 434 (1019)
+.|++.++.. ......+. ....+..|+|.+.+ +.++++-...+.|+.+++... ......+..
T Consensus 386 ~~I~~id~~~-~~~~~~~~-~~~~p~gla~d~~~-------------~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~ 450 (699)
T 1n7d_A 386 HEVRKMTLDR-SEYTSLIP-NLRNVVALDTEVAS-------------NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450 (699)
T ss_dssp TC-CEECTTS-CCEECCSC-CCTTCCCCEEETTT-------------TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS
T ss_pred cceEEEeCCC-Ccceeeec-cCcceEEEcccccc-------------CeEEEEecCCCeEEEEecCCCCCCcceEEEEeC
Confidence 5666666632 22222222 22334455565543 344555556678888887431 111111111
Q ss_pred ccccEeEEEEecCCCE-EEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccE
Q psy307 435 HRQAVRDICFNNTGTN-FISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPA 513 (1019)
Q Consensus 435 H~~~V~sl~fspdg~~-l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~ 513 (1019)
.......|++.+.+.. +++-...+.|.+.++........+.. .......
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~------------------------------~~~~P~g 500 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------------------------QGSKPRA 500 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC------------------------------SSCCCCC
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC------------------------------CCCCcce
Confidence 1123455677754443 44444567788887764432221111 1122345
Q ss_pred EEEcCCCCEEEEEe-c-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCcee
Q psy307 514 VTSSPNNKWLACQS-M-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG-DADGKCYIWDWKTTKLF 590 (1019)
Q Consensus 514 v~~spdg~~Lasgs-~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg-s~DG~I~IWDl~t~~~l 590 (1019)
++++|.+.+|+... . .+.|.++++..... ..+... .-.....|+|+|++..|+.+ +..+.|.++|+......
T Consensus 501 iavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 501 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 575 (699)
T ss_dssp EECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred EEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence 67777554444433 2 26788777754321 112111 11346679999976655544 45678999998653322
Q ss_pred eeeec--cCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 591 KKWKA--HDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 591 ~~l~~--h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
..+.. .-....++++..+ .++++....+.|.++
T Consensus 576 ~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 576 TILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSA 610 (699)
T ss_dssp EECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEE
T ss_pred EEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEE
Confidence 22221 1122345555432 466666556677655
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.5 Score=46.50 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=69.2
Q ss_pred CcEEEEeeCCCeEEEEecCCCcEEEEEeccc-CccEeEEEEcCCCCceeEEEeecCCCCcEEEEE-eCCCcEEEEEccCC
Q psy307 348 AHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSC-SMDCRVKLWEVYKE 425 (1019)
Q Consensus 348 g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sg-s~Dg~I~IWDl~~~ 425 (1019)
+.+++.++.||.|.-.|. .+++....+... ..++... .... .+.++..++.. +.||.|..++...
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~---~~~~--------~~~~~~~~vv~p~~dG~l~a~~~~~- 76 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEI---QEPS--------RLETYETLIIEPFGDGNIYYFNAHQ- 76 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEEC---CCSC--------TTTSSEEEEECCSTTTEEEEEETTT-
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEe---cCCc--------cccCCcEEEEEECCCCEEEEEECCC-
Confidence 347899999999999998 556667766543 1122111 1000 01122333333 6899999999844
Q ss_pred CeEEEEEcc----ccccEeE---EEE-----ecCCCEEEEEEcCCeEEEEECCCCceEEEEecC
Q psy307 426 HRCVRTYYG----HRQAVRD---ICF-----NNTGTNFISAGYDRYLKLWDTESGECISRFTSR 477 (1019)
Q Consensus 426 ~~~~~~l~~----H~~~V~s---l~f-----spdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~ 477 (1019)
+.....+.. ...++.. ... ...+..+++|+.+|++.-.|+.+|+.+..+...
T Consensus 77 G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 77 GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 332222221 1112211 000 014557899999999999999999999988764
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.02 E-value=5.1 Score=45.11 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=85.4
Q ss_pred CcEEEEEccCCCeEEEEEccc----cccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEE-ecCCceEEEEEecCC
Q psy307 415 CRVKLWEVYKEHRCVRTYYGH----RQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRF-TSRKVAYCVKFHPDE 489 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~-~~~~~v~~v~~~p~~ 489 (1019)
+.||.-++.... ..+.+... -..|..+..+|+|++|+..+ +..|.|-.+..+.....- .....+.+-.|.-+.
T Consensus 41 n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 41 NIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 566666664222 23333322 23578899999999887764 568888888743211000 000111111111000
Q ss_pred CeeeeccCCCceeeeCCCCCcccEEEEcCC---CCEEEEEecCCeEEEEEccCcccccc-e----eEEeccccccceEEE
Q psy307 490 DKQHLDIPVDMKYIADPTMHSMPAVTSSPN---NKWLACQSMDNKILIFSALNRFKLNR-K----KTFEGHMVAGYACSL 561 (1019)
Q Consensus 490 ~~~~~~~~~~~~~i~~~~~~~i~~v~~spd---g~~Lasgs~Dg~I~iwd~~~~~~~~~-~----~~l~gh~~~~~V~~v 561 (1019)
........|..+.|||- |..|++-..|+.|++||+........ + ..+........|.++
T Consensus 119 -------------~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 119 -------------EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp -------------CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred -------------cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 00112456778888885 56899999999999999986322111 0 111111111458899
Q ss_pred EEcCCCCEEEEEe--CCCeEEEE
Q psy307 562 DFSPDMSYLISGD--ADGKCYIW 582 (1019)
Q Consensus 562 ~fspdg~~Lasgs--~DG~I~IW 582 (1019)
+|.++|-.|...+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999887666644 77877654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.99 E-value=15 Score=41.56 Aligned_cols=233 Identities=9% Similarity=0.094 Sum_probs=135.6
Q ss_pred EcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEc
Q psy307 343 WFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEV 422 (1019)
Q Consensus 343 fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl 422 (1019)
.+|. ..++|.-. ..++.|+|++.. ..+..+.-. ..|..=.|-.+. .|+-. .+..|+-|++
T Consensus 73 MnP~-~~iiALra-g~~lQiFnle~K-~klks~~~~-e~VvfWkWis~~---------------~l~lV-T~taVyHWsi 132 (494)
T 1bpo_A 73 MNPA-SKVIALKA-GKTLQIFNIEMK-SKMKAHTMT-DDVTFWKWISLN---------------TVALV-TDNAVYHWSM 132 (494)
T ss_dssp ECSS-SSCEEEEE-TTEEEEEETTTT-EEEEEEECS-SCCCEEEEEETT---------------EEEEE-CSSEEEEEES
T ss_pred eCCC-CcEEEEec-CCeEEEEchHHh-hhhcceecC-CCceEEEecCCC---------------eEEEE-cCCeeEEecc
Confidence 3663 45555444 689999999544 444443322 345555554433 22222 3567999999
Q ss_pred cCCCeEEEEEcccc----ccEeEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 423 YKEHRCVRTYYGHR----QAVRDICFNNTGTNFISAGY-------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 423 ~~~~~~~~~l~~H~----~~V~sl~fspdg~~l~S~s~-------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.....+...+..|. ..|..-..+++.++++..|- .|.+.+|..+.+.. +.++++.... ..+..++
T Consensus 133 ~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F-~~~~~~g-- 208 (494)
T 1bpo_A 133 EGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKMEG-- 208 (494)
T ss_dssp SSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEE-EEEECTT--
T ss_pred cCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeee-EEEecCC--
Confidence 76667778877764 44666677888888664442 46788888876543 3333332111 1111111
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec---CCeEEEEEccCc---ccccceeEE----eccccccceEEE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM---DNKILIFSALNR---FKLNRKKTF----EGHMVAGYACSL 561 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~---Dg~I~iwd~~~~---~~~~~~~~l----~gh~~~~~V~~v 561 (1019)
...+. ..++.+.. .+.++|.++... ...-..+.. ..........++
T Consensus 209 ---------------~~~~~---------~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 209 ---------------NAEES---------TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp ---------------CSSEE---------EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred ---------------CCCCc---------eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence 00111 12222222 368888888532 111111111 111123556788
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 562 DFSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 562 ~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
..|+.-..+..-+.-|.|++||+.|+.++..-+-....|...+-+... .-++.....|.|..
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~ 326 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLS 326 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEEEE
T ss_pred EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceEEE
Confidence 999988899999999999999999999988777666667666555443 24666667777643
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.91 E-value=5.1 Score=45.95 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=22.9
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCc
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGE 469 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~ 469 (1019)
...++|+|.|+|+.+++-...+.|++++..++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 345688999999866654333478888765554
No 319
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.72 E-value=6.3 Score=42.79 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=96.4
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
..|.|-|+.......+.--.-.+. -.+|..+.++.-. ..++.|+|+++.+.+..+.....+.--.|-.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~AdsA----IMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis------- 116 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISADSA----IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS------- 116 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCSEE----EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS-------
T ss_pred CEEEEEECCCCCCcccccccccee----eeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC-------
Confidence 367788886665554443333333 4588877666554 7899999999999999988877666655532
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Las 572 (1019)
.+.|+.-+ +..|+.|++.+.. .+.+.+..|. ....|..-..+++.+|++.
T Consensus 117 -------------------------~~~L~lVT-~taVyHWs~~~~s--~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l 168 (365)
T 2xzh_A 117 -------------------------LNTVALVT-DNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLL 168 (365)
T ss_dssp -------------------------SSEEEEEE-SSEEEEEESSTTC--CCEEEEECCGGGTTCEEEEEEECTTSCEEEE
T ss_pred -------------------------CCeEEEEc-CCcEEEEcccCCC--CCceeeecchhcccceEEEEEECCCCCEEEE
Confidence 23344443 6789999987632 3455555543 3355777888999998775
Q ss_pred EeC-------CCeEEEEeCCCCceeeeeeccCCCE
Q psy307 573 GDA-------DGKCYIWDWKTTKLFKKWKAHDGVC 600 (1019)
Q Consensus 573 gs~-------DG~I~IWDl~t~~~l~~l~~h~~~V 600 (1019)
.+- .|.+.+|..+. +.-+.+.+|.+.-
T Consensus 169 ~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 169 TGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred EeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 542 37889998754 4456677776543
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.61 E-value=13 Score=45.51 Aligned_cols=228 Identities=10% Similarity=0.055 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEec----ccCccEeEEEEcCCCCceeEEEeecCCCCcEEEE
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYY----GHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLS 410 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~----gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~s 410 (1019)
...|++|.-..+ | .|-.|+.+| +..+|-.. ...+. .....|.++....+| .|..
T Consensus 21 ~n~V~~I~qD~~-G-~lWigT~~G-L~ryDG~~----~~~~~~~~~~~~~~i~~i~~d~~g---------------~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSE-G-LIWIGSNKG-LFSYDGYS----TQQHFTYGENNNTRIYCGVIIDNT---------------YLYM 78 (758)
T ss_dssp CCCEEEEEECTT-S-CEEEEESSC-EEEECSSC----EEECSCTTSTTSSCEEEEEEETTT---------------EEEE
T ss_pred cceEEEEEECCC-C-CEEEEECCC-ccccCCCc----eEEEEccCCCCCceEEEEEEcCCC---------------cEEE
Confidence 457899987764 3 455566777 44566321 11121 112346666555544 5666
Q ss_pred EeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCC
Q psy307 411 CSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDED 490 (1019)
Q Consensus 411 gs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~ 490 (1019)
|+.+| +..||.... ............|.++.. .+| .|..++.+ -|..+|..+++... +... +
T Consensus 79 gT~~G-l~~yd~~~~-~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~---------~--- 140 (758)
T 3ott_A 79 GTDNG-ILVYNYRAD-RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS-FDTR---------R--- 140 (758)
T ss_dssp EETTE-EEEEETTTT-EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE-ECHH---------H---
T ss_pred EeCCC-eEEEeCCCC-EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE-eccC---------C---
Confidence 66655 778887432 221111112235766654 344 45556665 57888877655322 2100 0
Q ss_pred eeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEecc----ccccceEEEEEcCC
Q psy307 491 KQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGH----MVAGYACSLDFSPD 566 (1019)
Q Consensus 491 ~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh----~~~~~V~~v~fspd 566 (1019)
.......|.++....+|.+.+ |+. +-|..|+..+.. ...+... .....|.++...++
T Consensus 141 -------------~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~ 201 (758)
T 3ott_A 141 -------------NGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTT 201 (758)
T ss_dssp -------------HCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETT
T ss_pred -------------CCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCc----eEEecCCCccccccceeEEEEEECC
Confidence 001123455666666776554 454 457778765431 1111110 01234788888877
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 567 MSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 567 g~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
+..|..|+. +-|..+|..+++...........|.++....++. |..|..+| +.++
T Consensus 202 ~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~~G-l~~~ 256 (758)
T 3ott_A 202 RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--LLAGTDNG-LYVY 256 (758)
T ss_dssp TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--EEEEETTE-EEEE
T ss_pred CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--EEEEeCCc-eeEE
Confidence 765555554 4588899877654322111233577887777663 44444444 4443
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.32 E-value=10 Score=40.09 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKR--SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCccc--ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 66777777654 468889987541 11111111111 11122223 67777777764 468999998764
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.29 E-value=3.9 Score=41.88 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=80.4
Q ss_pred ccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEE
Q psy307 437 QAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTS 516 (1019)
Q Consensus 437 ~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~ 516 (1019)
..+.+++|+|+|...+. .+|.+.-.+..+.....-+.. ...+-...-..-.++.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-----------------------~t~IG~~Gw~~F~a~~f 95 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-----------------------AKKIGNGGWNQFQFLFF 95 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-----------------------CEEEECSCGGGCSEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-----------------------ccEecccccccceEEEE
Confidence 36779999999886555 677766555433221100000 00111111112467888
Q ss_pred cCCCCEEEEEecCCeEEEEEccCccccc--ceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----
Q psy307 517 SPNNKWLACQSMDNKILIFSALNRFKLN--RKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL----- 589 (1019)
Q Consensus 517 spdg~~Lasgs~Dg~I~iwd~~~~~~~~--~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~----- 589 (1019)
.|+|.+.++ .||.|+-++.-+..... -..+.-+...-..+..+.|.|+|.+.+.. ||.++-+...++..
T Consensus 96 D~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~ 171 (236)
T 1tl2_A 96 DPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLA 171 (236)
T ss_dssp CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHH
T ss_pred CCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccc
Confidence 999988877 56999877753211100 01111111112347899999999877766 77754443332210
Q ss_pred -eeeee-ccCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q psy307 590 -FKKWK-AHDGVCISTLWHPHEPSKVVTAGWDAATA 623 (1019)
Q Consensus 590 -l~~l~-~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~ 623 (1019)
...+. ..-..-.-+.|.+++. |..+. +|.+.
T Consensus 172 ~~~~~g~~g~~~yr~l~f~~~G~--l~~v~-~g~~Y 204 (236)
T 1tl2_A 172 RATKIGQGGWDTFKFLFFSSVGT--LFGVQ-GGKFY 204 (236)
T ss_dssp HCEEEESSSGGGEEEEEECTTSC--EEEEE-TTEEE
T ss_pred ccceeccCCcceEEEEEECCCCc--EEEEe-CCeEE
Confidence 11111 1122344566888763 33333 77553
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.26 E-value=15 Score=39.90 Aligned_cols=233 Identities=10% Similarity=0.111 Sum_probs=136.2
Q ss_pred cCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc
Q psy307 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 344 spd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~ 423 (1019)
+|. ...+|.-. ..++.|+|++.. ..+..+.- ...|..=.|-.+. .|+-. .+..|+-|++.
T Consensus 75 nP~-~~ViALra-g~~LQiFnletK-~klks~~~-~e~VvfWkWis~~---------------~L~lV-T~taVyHWs~~ 134 (365)
T 2xzh_A 75 NPA-SKVIALKA-GKTLQIFNIEMK-SKMKAHTM-TDDVTFWKWISLN---------------TVALV-TDNAVYHWSME 134 (365)
T ss_dssp CSS-SSEEEEEE-TTEEEEEETTTT-EEEEEEEC-SSCEEEEEECSSS---------------EEEEE-ESSEEEEEESS
T ss_pred CCC-ccEEEEec-CCeEEEechHHh-hhhcceec-CCccEEEEecCCC---------------eEEEE-cCCcEEEEccc
Confidence 663 55555544 678999999544 44444332 2456666665543 23222 24679999997
Q ss_pred CCCeEEEEEcccc----ccEeEEEEecCCCEEEEEEc-------CCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 424 KEHRCVRTYYGHR----QAVRDICFNNTGTNFISAGY-------DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 424 ~~~~~~~~l~~H~----~~V~sl~fspdg~~l~S~s~-------Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
....+...+..|. ..|..-..+++.++++..+- .|.+.+|..+.+.. +.++++.... ..+..++
T Consensus 135 ~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F-~~~~~~g--- 209 (365)
T 2xzh_A 135 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKMEG--- 209 (365)
T ss_dssp TTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEE-EEECCTT---
T ss_pred CCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeeeeeeee-EEEecCC---
Confidence 6677888877764 34666677888888665442 36788888775532 3333332111 1111111
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEec---CCeEEEEEccCc---ccccceeE----EeccccccceEEEE
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSM---DNKILIFSALNR---FKLNRKKT----FEGHMVAGYACSLD 562 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~---Dg~I~iwd~~~~---~~~~~~~~----l~gh~~~~~V~~v~ 562 (1019)
...+. +.++.+.. .++++|.++... ...-..+. +..........++.
T Consensus 210 --------------~~~~~---------~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamq 266 (365)
T 2xzh_A 210 --------------NAEES---------TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 266 (365)
T ss_dssp --------------CSSCE---------EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEE
T ss_pred --------------CCCCc---------eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEE
Confidence 00111 12222211 258888887432 11111111 11111235567888
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 563 FSPDMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 563 fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
.|+.-..+..-+.-|.|++||+.|+.++..-+-....|...+-+... .-++.....|.|..+
T Consensus 267 vs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~-~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 267 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSV 328 (365)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG-TEEEEEETTCEEEEE
T ss_pred ecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC-CcEEEEcCCCEEEEE
Confidence 99888889999999999999999999988777666777666654443 236666677877543
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.75 E-value=15 Score=38.88 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCCEEEEEec---------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeC
Q psy307 519 NNKWLACQSM---------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDW 584 (1019)
Q Consensus 519 dg~~Lasgs~---------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl 584 (1019)
++++++.|+. -+.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-WTELCPMIEAR--KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCEETTEEBCCEEEEET
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCe-EEECCCccchh--hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeC
Confidence 5666666653 3458889887641 11111111111 11122222 67777777654 35889998
Q ss_pred CCCc--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 585 KTTK--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 585 ~t~~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+.+ .+..+.........+.+ ++.+++.||.++
T Consensus 224 ~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 258 (306)
T 3ii7_A 224 KLNEWKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQG 258 (306)
T ss_dssp TTTEEEECCCCSCCBSCCEEEEE---TTEEEEEECBCS
T ss_pred CCCcEEECCCCCCCccceeEEEE---CCEEEEEeCcCC
Confidence 8753 22222221122223333 336777777654
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.64 E-value=9 Score=42.12 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=28.4
Q ss_pred EEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCce
Q psy307 431 TYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGEC 470 (1019)
Q Consensus 431 ~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~ 470 (1019)
.+...-...+.|+|.|+|+.+++--..|.|++++..+++.
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 3333445667889999998766654489999998766553
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.58 E-value=16 Score=38.69 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=35.4
Q ss_pred CCCEEEEEecC-------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q psy307 519 NNKWLACQSMD-------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKT 586 (1019)
Q Consensus 519 dg~~Lasgs~D-------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t 586 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||..+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEMSTRR--SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCCcccc--ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 56666766542 458889887541 11111111111 11122222 677778877643 689999877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 230 ~~ 231 (302)
T 2xn4_A 230 NA 231 (302)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.92 E-value=15 Score=38.79 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=35.9
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
+++.++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR--CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc--cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 56777777664 468899987642 11111111111 11222233 67777777765 357888887653
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.84 E-value=19 Score=38.35 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=36.4
Q ss_pred CCCCEEEEEec-C-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q psy307 518 PNNKWLACQSM-D-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKT 586 (1019)
Q Consensus 518 pdg~~Lasgs~-D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t 586 (1019)
-+++.++.|+. + +.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||+.+
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPMQTAR--SLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCCCCch--hceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 35667777765 2 468889887541 11111111111 11122222 677777777654 588999877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 222 ~~ 223 (315)
T 4asc_A 222 NK 223 (315)
T ss_dssp TE
T ss_pred Ce
Confidence 63
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.72 E-value=9 Score=39.18 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=59.2
Q ss_pred EeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcC
Q psy307 439 VRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSP 518 (1019)
Q Consensus 439 V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~sp 518 (1019)
-.++.|.|+|.+.++ .||.|.-++-.+.....-+ .....+-...-..+..+.+.|
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl-----------------------~~a~~vg~~gw~~~~~lff~p 144 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWI-----------------------ARATEVGSGGWSGFKFLFFHP 144 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH-----------------------HHSEEEECSSGGGEEEEEECT
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCcee-----------------------ccccEeccCCCCceEEEEECC
Confidence 478899999987766 6698887764321110000 001112222224567888999
Q ss_pred CCCEEEEEecCCeEEEEEccCcc--cccceeEEeccccccceEEEEEcCCCCEEEEEeCCCeEE
Q psy307 519 NNKWLACQSMDNKILIFSALNRF--KLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCY 580 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~--~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~ 580 (1019)
+|.+.++. |+.++-...-... ......+..++..-....-+.|+++|.+.++. +|.++
T Consensus 145 ~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 145 NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 99887777 7775433221110 00001222222212234456788888866655 66443
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=89.36 E-value=13 Score=41.97 Aligned_cols=148 Identities=12% Similarity=0.120 Sum_probs=96.2
Q ss_pred CcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeee
Q psy307 415 CRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHL 494 (1019)
Q Consensus 415 g~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~ 494 (1019)
..|.|-|+.......+.-..-. +.-.+|..+.++--. ..++.|+|+++...+..+.....+.--.|-.+
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~------ 116 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL------ 116 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET------
T ss_pred CeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC------
Confidence 3677888866555544333222 225677777666554 78999999999999998887666655555321
Q ss_pred ccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccc--cccceEEEEEcCCCCEEEE
Q psy307 495 DIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHM--VAGYACSLDFSPDMSYLIS 572 (1019)
Q Consensus 495 ~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~--~~~~V~~v~fspdg~~Las 572 (1019)
+.|+.-+ +..|+.|++.+.. .+.+.+..|. ....|..-..+++.+|++.
T Consensus 117 --------------------------~~l~lVT-~taVyHWsi~~~s--~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l 167 (494)
T 1bpo_A 117 --------------------------NTVALVT-DNAVYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLL 167 (494)
T ss_dssp --------------------------TEEEEEC-SSEEEEEESSSSC--CCEEEEECCGGGTTCEEEEEEECTTSSEEEE
T ss_pred --------------------------CeEEEEc-CCeeEEecccCCC--CchhheecchhcccceEEEEEECCCCCeEEE
Confidence 2344433 6789999987532 3455555543 3356777888999998775
Q ss_pred Ee-------CCCeEEEEeCCCCceeeeeeccCCCEEEE
Q psy307 573 GD-------ADGKCYIWDWKTTKLFKKWKAHDGVCIST 603 (1019)
Q Consensus 573 gs-------~DG~I~IWDl~t~~~l~~l~~h~~~V~sl 603 (1019)
.+ -.|.+.+|..+. +.-+.+.+|.+.-..+
T Consensus 168 ~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~ 204 (494)
T 1bpo_A 168 TGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQF 204 (494)
T ss_dssp EEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEE
T ss_pred EeecccCCcccceEEEeeccc-cccchheeeeeeeEEE
Confidence 43 247889999765 3455677776544333
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.30 E-value=16 Score=38.66 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=35.9
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
++++++.|+.+ ..+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKG--VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCB--SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCc--cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 56677777653 468889987641 11111111111 11222333 67788888754 468888887653
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.93 E-value=20 Score=37.82 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG-----KCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG-----~I~IWDl~t~~ 588 (1019)
++++++.|+.+ +.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCR--RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcc--ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 56777777654 468899987541 11111111111 11112222 677777777654 48888887653
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.50 E-value=18 Score=38.45 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=36.5
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
++++++.|+.+ +.+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAMNTIR--SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCCCCcc--ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 56777777654 468889886541 11111111111 11222333 67777777764 468999988754
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.87 E-value=32 Score=36.83 Aligned_cols=127 Identities=10% Similarity=0.040 Sum_probs=67.2
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEc-CCeEEEEECCCCceEEEEecCCceEEEEEecCCCe
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGY-DRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDK 491 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~-Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~ 491 (1019)
.++.-.||-+...+.....+..+.. ..|+++++.|+-.+. ...|.+-++..+.....+.. . .
T Consensus 125 ~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-~-~----------- 187 (302)
T 3s25_A 125 TQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-N-C----------- 187 (302)
T ss_dssp SSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-C-E-----------
T ss_pred CCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-C-c-----------
Confidence 3444455554434433444444433 356778888776655 56787778766543322211 0 0
Q ss_pred eeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecC--CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCE
Q psy307 492 QHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMD--NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSY 569 (1019)
Q Consensus 492 ~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~D--g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~ 569 (1019)
...++|++.+|+-...+ ..|..-++..... ..+.. ..+ ..|+|+|.+
T Consensus 188 ---------------------~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt~----~~~--~~~~~~g~~ 236 (302)
T 3s25_A 188 ---------------------YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLTE----ANI--EHYNVYGSL 236 (302)
T ss_dssp ---------------------EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECSC----SCE--EEEEEETTE
T ss_pred ---------------------cceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEeC----CCc--ceEEECCCE
Confidence 11234777777765543 3566666655421 22222 122 347888888
Q ss_pred EEEEeC--CCeEEEEeCCCC
Q psy307 570 LISGDA--DGKCYIWDWKTT 587 (1019)
Q Consensus 570 Lasgs~--DG~I~IWDl~t~ 587 (1019)
|.-++. .+.|..-++...
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEECSSSCEEEEEETTSC
T ss_pred EEEEECCCCcEEEEEECCCC
Confidence 876532 356666666543
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=85.96 E-value=39 Score=35.89 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCCCEEEEEec------CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC
Q psy307 518 PNNKWLACQSM------DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKT 586 (1019)
Q Consensus 518 pdg~~Lasgs~------Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t 586 (1019)
.+++.++.|+. -+.+.+||..+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPR--SMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCC--BSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCc--ccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 36667777654 2468899987641 11111111111 11122222 66777777643 3577899877
Q ss_pred Cc
Q psy307 587 TK 588 (1019)
Q Consensus 587 ~~ 588 (1019)
.+
T Consensus 232 ~~ 233 (318)
T 2woz_A 232 NK 233 (318)
T ss_dssp CC
T ss_pred Ce
Confidence 54
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=85.77 E-value=35 Score=36.45 Aligned_cols=81 Identities=2% Similarity=0.010 Sum_probs=45.0
Q ss_pred EcCCCCEEEEEec-CCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeee
Q psy307 516 SSPNNKWLACQSM-DNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD--GKCYIWDWKTTKLFKK 592 (1019)
Q Consensus 516 ~spdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D--G~I~IWDl~t~~~l~~ 592 (1019)
++|+++.|.-.+. ..+|.+.++.++.. ...+.+. .. ..++|++.+|+-...+ ..|..-++..+. ...
T Consensus 152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---~~l~~~~-----~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~ 221 (302)
T 3s25_A 152 CNTSDRYFYYNNPKNGQLYRYDTASQSE---ALFYDCN-----CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVV 221 (302)
T ss_dssp SEEETTEEEEECTTTCCEEEEETTTTEE---EEEECSC-----EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEE
T ss_pred eeEECCEEEEEeCCCceEEEEECCCCCE---EEEeCCC-----cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEE
Confidence 4567777776654 56888888766532 1222221 11 2356999988876544 356666766544 333
Q ss_pred eeccCCCEEEEEEcCCCC
Q psy307 593 WKAHDGVCISTLWHPHEP 610 (1019)
Q Consensus 593 l~~h~~~V~sl~~sp~~~ 610 (1019)
+.. ..+. .|+|.+.
T Consensus 222 Lt~--~~~~--~~~~~g~ 235 (302)
T 3s25_A 222 LTE--ANIE--HYNVYGS 235 (302)
T ss_dssp CSC--SCEE--EEEEETT
T ss_pred EeC--CCcc--eEEECCC
Confidence 322 2232 3666664
No 337
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.52 E-value=22 Score=46.17 Aligned_cols=235 Identities=9% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEcc
Q psy307 344 FPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVY 423 (1019)
Q Consensus 344 spd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~ 423 (1019)
+|. ..++|.-+ ..++.|+|+.... .+..+.- ...|..=.|-.+. .|+-. .+..|.-|++.
T Consensus 74 nP~-~~iiALra-g~~lQiFnl~~k~-klks~~~-~e~VvfWkWis~~---------------~l~lV-T~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPA-SKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLN---------------TVALV-TDNAVYHWSME 133 (1630)
T ss_pred CCC-cceEEEec-CCeEEEeehHHhh-hhccccc-CCCceEEEecCCC---------------eeEEE-cCCeEEEeccC
Confidence 553 44444443 6789999994432 2332222 2345545554433 22222 34679999996
Q ss_pred CCCeEEEEEccc----cccEeEEEEecCCCEEEEEE-------cCCeEEEEECCCCceEEEEecCCceEEEEEecCCCee
Q psy307 424 KEHRCVRTYYGH----RQAVRDICFNNTGTNFISAG-------YDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQ 492 (1019)
Q Consensus 424 ~~~~~~~~l~~H----~~~V~sl~fspdg~~l~S~s-------~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~ 492 (1019)
....+...+..| ...|..-..+++.++++..| -.|.+.+|.++.+.. +.+.++.... ..+..+
T Consensus 134 ~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F-~~~~~~---- 207 (1630)
T 1xi4_A 134 GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKME---- 207 (1630)
T ss_pred CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhh-heeccC----
Confidence 555666666655 34566667788888866444 246777887765432 1122111000 000000
Q ss_pred eeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCc---c-cc--cceeE-EeccccccceEEEEEcC
Q psy307 493 HLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNR---F-KL--NRKKT-FEGHMVAGYACSLDFSP 565 (1019)
Q Consensus 493 ~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~---~-~~--~~~~~-l~gh~~~~~V~~v~fsp 565 (1019)
....+..-++|.... ...+.++|.++... . .. ..... +..........++..|+
T Consensus 208 -------------~~~~~~~l~~f~~~~------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~ 268 (1630)
T 1xi4_A 208 -------------GNAEESTLFCFAVRG------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 268 (1630)
T ss_pred -------------CCCCCceEEEEEEec------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc
Confidence 000111111221111 11267888877432 0 10 00000 11111124456788888
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q psy307 566 DMSYLISGDADGKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAK 624 (1019)
Q Consensus 566 dg~~Lasgs~DG~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~i 624 (1019)
.-..+..-+.-|.|+++|+.|+.++..-+-...+|...+-+...+ -++.....|.|..
T Consensus 269 k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~-g~~~vnr~G~vl~ 326 (1630)
T 1xi4_A 269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA-GIIGVNRKGQVLS 326 (1630)
T ss_pred ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCC-ceEEEcCCceEEE
Confidence 888888889999999999999998776555555555554443321 2555556666643
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=82.55 E-value=42 Score=36.23 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=19.1
Q ss_pred eEEEEeCCCCc--eeeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 578 KCYIWDWKTTK--LFKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 578 ~I~IWDl~t~~--~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+.+||+.+.+ .+..+........++.+ ++ .+++.||.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW--NN-SLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE--TT-EEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe--CC-EEEEEeeeCC
Confidence 57889987653 33333322222222322 23 6778888654
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=78.88 E-value=47 Score=35.04 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=35.5
Q ss_pred CCCEEEEEecC-----CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy307 519 NNKWLACQSMD-----NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD-----GKCYIWDWKTTK 588 (1019)
Q Consensus 519 dg~~Lasgs~D-----g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D-----G~I~IWDl~t~~ 588 (1019)
++++++.|+.+ ..+.+||+.+.. ...+..+.... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRR--SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCc--cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 66777777664 568999987641 11111111111 11122222 67777777754 357788876653
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=78.47 E-value=58 Score=39.26 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=74.9
Q ss_pred cEEEEEeCC------CcEEEEEccCCCeEE-EEEccccccEeEEEEecCCCEEEEEEcCC--eEEEEECCCCceEEEEec
Q psy307 406 HLLLSCSMD------CRVKLWEVYKEHRCV-RTYYGHRQAVRDICFNNTGTNFISAGYDR--YLKLWDTESGECISRFTS 476 (1019)
Q Consensus 406 ~~L~sgs~D------g~I~IWDl~~~~~~~-~~l~~H~~~V~sl~fspdg~~l~S~s~Dg--~I~lWDl~t~~~i~~~~~ 476 (1019)
.+++.|+.+ ..+.+||+.+..... ..+..... -.+++...++..++.||.++ .+.+||+.++.-...-..
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 566777654 347788874432111 11111111 11223323777888887765 688888876542111000
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCC-CCEEEEEec--C-----CeEEEEEccCccc-----c
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPN-NKWLACQSM--D-----NKILIFSALNRFK-----L 543 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spd-g~~Lasgs~--D-----g~I~iwd~~~~~~-----~ 543 (1019)
.. .| .......++.+..+ ++.++.|+. + +.+.+||+.+..- .
T Consensus 532 g~-------~p------------------~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W 586 (695)
T 2zwa_A 532 DE-------FF------------------QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITV 586 (695)
T ss_dssp SG-------GG------------------GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEE
T ss_pred CC-------CC------------------CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEE
Confidence 00 00 00111223444544 667777765 2 4688999876531 1
Q ss_pred cceeEEeccccccceEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCc
Q psy307 544 NRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD--------GKCYIWDWKTTK 588 (1019)
Q Consensus 544 ~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D--------G~I~IWDl~t~~ 588 (1019)
..+.... ....... +++...++++++.|+.+ ..|.+||+.+.+
T Consensus 587 ~~~~~~p-~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 587 IKKLQHP-LFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEECG-GGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEcCCCC-CCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 1111110 0101111 22233337777777743 458999988764
No 341
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=78.06 E-value=57 Score=34.45 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCCEEEEEecC--------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC-C-----CeEEEEeC
Q psy307 519 NNKWLACQSMD--------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA-D-----GKCYIWDW 584 (1019)
Q Consensus 519 dg~~Lasgs~D--------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~-D-----G~I~IWDl 584 (1019)
+++.++.|+.+ +.+.+||..+.. ......+.... .....+. .++++++.|+. + ..+.+||.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVV--YGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCC--BSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCcc--cceeEEE--ECCEEEEEeCCCCCCcccceEEEEeC
Confidence 56666676632 468888887641 11111111111 1111222 36677777765 2 36899998
Q ss_pred CCCce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCCc
Q psy307 585 KTTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDAA 621 (1019)
Q Consensus 585 ~t~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~ 621 (1019)
.+.+- +..+.........+.+ ++ .+++.||.++.
T Consensus 173 ~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~ 208 (315)
T 4asc_A 173 KKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDT 208 (315)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSS
T ss_pred CCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCC
Confidence 87532 2222211111122222 33 67788876653
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.76 E-value=4.4 Score=44.44 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=69.2
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEecC--CceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEE
Q psy307 449 TNFISAGYDRYLKLWDTESGECISRFTSR--KVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQ 526 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~--~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasg 526 (1019)
..++.++.||.|.-.|..+|+.+.++... .++.... . ... ..++..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~---~--------------------~~~-----~~~~~~~vv~ 62 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ---E--------------------PSR-----LETYETLIIE 62 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC---C--------------------SCT-----TTSSEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec---C--------------------Ccc-----ccCCcEEEEE
Confidence 46889999999999999999998888754 1111100 0 000 0123333333
Q ss_pred -ecCCeEEEEEccCcccccceeEEecc--ccccceEE---EEE-----cCCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q psy307 527 -SMDNKILIFSALNRFKLNRKKTFEGH--MVAGYACS---LDF-----SPDMSYLISGDADGKCYIWDWKTTKLFKKWKA 595 (1019)
Q Consensus 527 -s~Dg~I~iwd~~~~~~~~~~~~l~gh--~~~~~V~~---v~f-----spdg~~Lasgs~DG~I~IWDl~t~~~l~~l~~ 595 (1019)
+.||.|..++..++... ..+.-. ....++.. ..+ +..+..+++|+.+|++.-.|+.+|+.+..+..
T Consensus 63 p~~dG~l~a~~~~~G~~~---~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 63 PFGDGNIYYFNAHQGLQK---LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp CSTTTEEEEEETTTEEEE---EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ECCCCEEEEEECCCCcEE---eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 57888888887765221 111110 01111110 000 01455788999999999999999999988863
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=74.41 E-value=98 Score=33.21 Aligned_cols=58 Identities=21% Similarity=0.143 Sum_probs=29.4
Q ss_pred eEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCCC------eEEEEeCCCCceeeee
Q psy307 531 KILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG------KCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 531 ~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG------~I~IWDl~t~~~l~~l 593 (1019)
.+.+||+.+. ....+..+.... ....++. .++++++.|+.++ .|.++++++++.+...
T Consensus 286 ~~~~yd~~~~-~W~~~~~~p~~r--~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 286 STDIHLWHNG-KWDKSGELSQGR--AYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp CCEEEECC----CEEEEECSSCC--BSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eEEEEecCCC-ceeeCCCCCCCc--ccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 5778888754 222222222221 1112222 3778888888653 4666788887765543
No 344
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.91 E-value=1.1e+02 Score=33.54 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=14.6
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCC
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDC 358 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg 358 (1019)
..|.+|++.|.+...|+.++..|
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC-
T ss_pred CceEEEEECCCCCCeEEEEecCC
Confidence 46999999984344455555554
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=69.52 E-value=74 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=41.1
Q ss_pred EEEcCCCCEEEEEecCC--eEEEEEccCcccccceeE---EeccccccceEEEEEcCC-CCEEEEEeC--C-----CeEE
Q psy307 514 VTSSPNNKWLACQSMDN--KILIFSALNRFKLNRKKT---FEGHMVAGYACSLDFSPD-MSYLISGDA--D-----GKCY 580 (1019)
Q Consensus 514 v~~spdg~~Lasgs~Dg--~I~iwd~~~~~~~~~~~~---l~gh~~~~~V~~v~fspd-g~~Lasgs~--D-----G~I~ 580 (1019)
++...+++.++.|+.++ .+.+||..+.. ...+.. ..... .....+.+..+ +++++.|+. + +.+.
T Consensus 495 ~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r--~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~ 571 (695)
T 2zwa_A 495 ACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNS--LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571 (695)
T ss_dssp EEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSC--CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEE
T ss_pred EEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcc--cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEE
Confidence 34434788888887655 68999987642 111111 00011 11223455554 677777765 2 3588
Q ss_pred EEeCCCCc
Q psy307 581 IWDWKTTK 588 (1019)
Q Consensus 581 IWDl~t~~ 588 (1019)
+||+.+.+
T Consensus 572 ~yd~~~~~ 579 (695)
T 2zwa_A 572 IFKYDAEN 579 (695)
T ss_dssp EEEECTTC
T ss_pred EEEccCCc
Confidence 99988776
No 346
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=69.32 E-value=2.1e+02 Score=34.90 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-------CccEeEEEEcCCC
Q psy307 335 TKGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-------RQAVRDICFNNTG 391 (1019)
Q Consensus 335 ~~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg 391 (1019)
.+.|.+|+++|.+...++.++..+.|...+ ..++.-..+..+ ...|.+|++.|..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~ 75 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN 75 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCC
Confidence 358999999997777888888777766654 333333333222 2357777777643
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=68.24 E-value=1e+02 Score=32.54 Aligned_cols=94 Identities=11% Similarity=0.140 Sum_probs=45.3
Q ss_pred CCCEEEEEecC-------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeC------CCeEEEEeCC
Q psy307 519 NNKWLACQSMD-------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDA------DGKCYIWDWK 585 (1019)
Q Consensus 519 dg~~Lasgs~D-------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~------DG~I~IWDl~ 585 (1019)
+++.++.|+.+ +.+.+||..+.. ...+..+.... .....+. .++++++.|+. -..+.+||..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK-WSEVKNLPIKV--YGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE-EEEECCCSSCE--ESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC-EeECCCCCCcc--cccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence 56777777754 357888876531 11111111111 0111122 36777777764 2358999988
Q ss_pred CCce--eeeeeccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 586 TTKL--FKKWKAHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 586 t~~~--l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
+.+- +..+.........+.+ ++ .+++.||.++
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~ 217 (318)
T 2woz_A 184 KGDWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTE 217 (318)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEET
T ss_pred CCEEEECCCCCCCcccceEEEE--CC-EEEEEcCcCC
Confidence 7642 2222211111122222 23 6777777554
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.79 E-value=1.7e+02 Score=33.23 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEec
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEV 365 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl 365 (1019)
.-+.|+|.|++...|+.+...|.|++++.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 56789999974334556678899999975
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=67.28 E-value=1.9e+02 Score=33.69 Aligned_cols=78 Identities=9% Similarity=0.103 Sum_probs=51.6
Q ss_pred cccEEEEcCCCCEEEEEe-cCCeEEEEEccCcccc------cceeEEec-cccccceEEEEEcCCCCEEEEEeCCCeEEE
Q psy307 510 SMPAVTSSPNNKWLACQS-MDNKILIFSALNRFKL------NRKKTFEG-HMVAGYACSLDFSPDMSYLISGDADGKCYI 581 (1019)
Q Consensus 510 ~i~~v~~spdg~~Lasgs-~Dg~I~iwd~~~~~~~------~~~~~l~g-h~~~~~V~~v~fspdg~~Lasgs~DG~I~I 581 (1019)
+...+.++|||+++++++ .+.++.++|...-... .......+ ...+-.....+|.++|.-..|---|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 345788999999998776 5679999998742110 11111111 112233667899999965566668999999
Q ss_pred EeCCCC
Q psy307 582 WDWKTT 587 (1019)
Q Consensus 582 WDl~t~ 587 (1019)
|++...
T Consensus 404 Wni~~a 409 (638)
T 3sbq_A 404 WNMEEA 409 (638)
T ss_dssp EEHHHH
T ss_pred EeccHH
Confidence 998653
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=66.17 E-value=1.1e+02 Score=40.07 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc----CccEeEEEEcCCCCceeEEEeecCCCCcEEEEEe
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH----RQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCS 412 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs 412 (1019)
.|.-=.|-.+ +.|+-.+ +..|..|++..+..+...+..| ...|..-..+++...++..-- ++.. +.
T Consensus 107 ~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi-~~~~------~~ 176 (1630)
T 1xi4_A 107 DVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-SAQQ------NR 176 (1630)
T ss_pred CceEEEecCC--CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee-ccCC------Cc
Confidence 5656666653 2233222 4579999996655555555544 344656666666643221100 1111 13
Q ss_pred CCCcEEEEEccCCCeEEEEEccccccEeEEEEe--cCCCEEEE-EEc---CCeEEEEECCCC-ceEEEEecCCceEEEEE
Q psy307 413 MDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFN--NTGTNFIS-AGY---DRYLKLWDTESG-ECISRFTSRKVAYCVKF 485 (1019)
Q Consensus 413 ~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fs--pdg~~l~S-~s~---Dg~I~lWDl~t~-~~i~~~~~~~~v~~v~~ 485 (1019)
-.|.+.+|.+ ..+..+.+.||.+....+... +....+++ +.. .+.+.|-++... .....+ .+....+-|
T Consensus 177 v~G~mQLyS~--er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f--~kk~~~~~~ 252 (1630)
T 1xi4_A 177 VVGAMQLYSV--DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF--PKKAVDVFF 252 (1630)
T ss_pred ccceeeeeec--ccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC--ccccccccC
Confidence 4588999987 445566677887655444432 11122322 221 256777776432 100001 111222222
Q ss_pred ecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCccc
Q psy307 486 HPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFK 542 (1019)
Q Consensus 486 ~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~ 542 (1019)
.|+ ....-..++.+++....+..-+.-|.|.+||+.++..
T Consensus 253 ~~~-----------------~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 253 PPE-----------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred Ccc-----------------cccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 222 1112233567788888888899999999999998743
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=65.43 E-value=2.3e+02 Score=34.03 Aligned_cols=92 Identities=8% Similarity=-0.012 Sum_probs=54.6
Q ss_pred cCCeEEEEEccCccc----ccceeEEeccccccceEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCc-eeee-eecc-CC
Q psy307 528 MDNKILIFSALNRFK----LNRKKTFEGHMVAGYACSLDFSPDMSYLISGDADG--KCYIWDWKTTK-LFKK-WKAH-DG 598 (1019)
Q Consensus 528 ~Dg~I~iwd~~~~~~----~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG--~I~IWDl~t~~-~l~~-l~~h-~~ 598 (1019)
..+.|...++.+... ......+-.+.....+..+.+..+ .++++...+| .|.++|+.+++ .... +... .+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 467788888876421 112233233333356778888876 5677777776 47778876664 2333 3222 24
Q ss_pred CEEEEEEcCCCCcEEEEEeCCC
Q psy307 599 VCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 599 ~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
.+......++++.++++.+...
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~ 418 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSI 418 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSS
T ss_pred EEEEEeecCcCCEEEEEEecCC
Confidence 5666777777766777666543
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.95 E-value=85 Score=39.40 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=34.3
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
.+.+++..++..++++.+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567778888888999999999999999999999988754
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=62.24 E-value=78 Score=36.06 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred ccEEEEcCCCC-EEEEEecCCeEEEEEccCcccccceeEEecc-------ccccceEEEEEcCC----CCEEEEEeC--C
Q psy307 511 MPAVTSSPNNK-WLACQSMDNKILIFSALNRFKLNRKKTFEGH-------MVAGYACSLDFSPD----MSYLISGDA--D 576 (1019)
Q Consensus 511 i~~v~~spdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh-------~~~~~V~~v~fspd----g~~Lasgs~--D 576 (1019)
...+++.|+|. .|++....|.|++++.........+..+... ...+....|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 34677888885 4555667899999975432111111111110 01245788999996 444443322 1
Q ss_pred ----------CeEEEEeCCC----------Cceeeeee----ccCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 577 ----------GKCYIWDWKT----------TKLFKKWK----AHDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 577 ----------G~I~IWDl~t----------~~~l~~l~----~h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
..|.-|.+.. .+.+..+. .|. -..|+|.||| .+.++.|..+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG-~LYv~~Gd~~ 160 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDG-FLYIILGDGM 160 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTS-CEEEEECCTT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCC-cEEEEeCCCC
Confidence 1344455532 12233332 243 5789999998 5777777654
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=61.00 E-value=28 Score=40.52 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=49.2
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCC-----------CeEEEEEccccccEeEEEEecCC
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKE-----------HRCVRTYYGHRQAVRDICFNNTG 448 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~-----------~~~~~~l~~H~~~V~sl~fspdg 448 (1019)
+....+.++|||. .++++|-.+.++.++|+..- ...+.....-.-.....+|.++|
T Consensus 323 ksPHGv~vsPDGk-------------yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 323 KNPHGCNTSSDGK-------------YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG 389 (638)
T ss_dssp SSCCCEEECTTSC-------------EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred CCCcceeeCCCCC-------------EEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence 3345566666664 56777788999999998531 11112212223445667999999
Q ss_pred CEEEEEEcCCeEEEEECCC
Q psy307 449 TNFISAGYDRYLKLWDTES 467 (1019)
Q Consensus 449 ~~l~S~s~Dg~I~lWDl~t 467 (1019)
....|.--|..|.-|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 5555666899999999864
No 355
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=60.04 E-value=3.7 Score=41.42 Aligned_cols=34 Identities=68% Similarity=0.975 Sum_probs=32.6
Q ss_pred cHHHHHhhchHHHHHHHHHHhhcceecCceeccc
Q psy307 810 PIVELKELITPEIVDLIQQQRLGYLVEGTRFTKY 843 (1019)
Q Consensus 810 ~~~lln~l~~~ei~~~i~~~~l~~li~~~~~~~~ 843 (1019)
++.++++.+++|+.+++++|+++.|.+|+.|.+.
T Consensus 8 ~v~~lre~l~~e~~e~VkeQRi~~L~~G~~F~k~ 41 (203)
T 3a98_B 8 PILELKEKIQPEILELIKQQRLNRLVEGTCFRKL 41 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECS
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHCCCeEecc
Confidence 9999999999999999999999999999999885
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.99 E-value=90 Score=39.14 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=33.2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 556 GYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 556 ~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
..+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 34677888889999999999999999999999987765
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.66 E-value=3.4e+02 Score=29.00 Aligned_cols=193 Identities=7% Similarity=-0.042 Sum_probs=91.6
Q ss_pred CcEEEEEeCCCcEEEEEccCC------CeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECC--CCceEEEEec
Q psy307 405 AHLLLSCSMDCRVKLWEVYKE------HRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTE--SGECISRFTS 476 (1019)
Q Consensus 405 ~~~L~sgs~Dg~I~IWDl~~~------~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~--t~~~i~~~~~ 476 (1019)
..+++..+.+|.|+--.+..- +.....+.. .+.+..+........++..+..|.+..+... .-.... ..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~g--r~ 185 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMG--RA 185 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCC--TT
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCC--cC
Confidence 468999999999999887431 111112233 2344444444455677778888887777664 211000 00
Q ss_pred CCceEEEEEecCCCeeeeccCCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccc----eeEEecc
Q psy307 477 RKVAYCVKFHPDEDKQHLDIPVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNR----KKTFEGH 552 (1019)
Q Consensus 477 ~~~v~~v~~~p~~~~~~~~~~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~----~~~l~gh 552 (1019)
...+ ..+.-.....|.++...+.+.+++..+..|.++.-.+..-....+ +..+.-.
T Consensus 186 a~Gv--------------------~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~ 245 (327)
T 3uc1_A 186 TSGV--------------------QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 245 (327)
T ss_dssp SBCE--------------------ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC
T ss_pred CCCe--------------------eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec
Confidence 0000 011111223455555555667889999999999887653211111 1111111
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------eeeeec-cCCCEEEEEEcCCCCcEEEEEeCCC
Q psy307 553 MVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKL-------FKKWKA-HDGVCISTLWHPHEPSKVVTAGWDA 620 (1019)
Q Consensus 553 ~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~-------l~~l~~-h~~~V~sl~~sp~~~~~l~s~s~Dg 620 (1019)
...+.+..+....+...++..+.+|.+.-++...-.. +.-+.- ....|.++...+.....+.+.+.+|
T Consensus 246 ~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 246 RRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp TTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred CCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 1013354444444555677777888877776543211 111111 2335666655544333455555544
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.42 E-value=64 Score=41.44 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=33.2
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
.+.+++..++..++++.+.|+++|+||+.+++|+.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777888999999999999999999999988764
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.29 E-value=3e+02 Score=32.21 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCceeeeeeccC-CCEEEEEEcCCCCcEEEE
Q psy307 558 ACSLDFSPDMSYLISGDAD------------GKCYIWDWKTTKLFKKWKAHD-GVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~D------------G~I~IWDl~t~~~l~~l~~h~-~~V~sl~~sp~~~~~l~s 615 (1019)
.-.|+|+|+|.++++-+.+ ..+.+.+..++++..-+.++. ..++.++|+|++..+++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999999977766543 245666777788776666554 579999999998544443
No 360
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=39.83 E-value=5.6e+02 Score=30.66 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEeccc-------CccEeEEEEcCCC
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGH-------RQAVRDICFNNTG 391 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh-------~~~V~~i~fspdg 391 (1019)
.|.+|+++|.+...++.+...|.|..++ ..++.-..+..+ ...|.+|++.|..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 7999999997667777777667665554 333322333222 1347777777644
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.66 E-value=75 Score=40.78 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeee
Q psy307 558 ACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKW 593 (1019)
Q Consensus 558 V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l 593 (1019)
+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566778899999999999999999999987764
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=31.43 E-value=5.1e+02 Score=27.64 Aligned_cols=104 Identities=7% Similarity=-0.067 Sum_probs=63.7
Q ss_pred CCCEEEEEecCCeEEEEEccCcccccc--eeEEeccccccceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CC-------
Q psy307 519 NNKWLACQSMDNKILIFSALNRFKLNR--KKTFEGHMVAGYACSLDFSPDMSYLISGDADGKCYIWDWK--TT------- 587 (1019)
Q Consensus 519 dg~~Lasgs~Dg~I~iwd~~~~~~~~~--~~~l~gh~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~--t~------- 587 (1019)
+..+++..+.+|.|+...+..-..... +..+. -.....+..+........|+..+..|.+..+... .-
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-LRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-CCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-ECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 578999999999999988765321111 11111 1112445555555566778888899998888766 21
Q ss_pred --ceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 588 --KLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 588 --~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
...-.+. ....|.++...+.+ ..++.++..|.+++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt 224 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREG-TYLLVATSGGYAKRT 224 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTT-CEEEEEETTSEEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCC-CEEEEEeCCCcEEEE
Confidence 1111222 23456666655544 478888889988765
No 363
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=28.43 E-value=8.1e+02 Score=29.06 Aligned_cols=260 Identities=7% Similarity=0.023 Sum_probs=131.2
Q ss_pred CCeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecc--c----CccEeEEEEcCCCCceeEEEeecCCCCcEEE
Q psy307 336 KGISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYG--H----RQAVRDICFNNTGTNFISAIRWFPKSAHLLL 409 (1019)
Q Consensus 336 ~~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~g--h----~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~ 409 (1019)
..|.++....+ +.+.+ |+.+| |..++.... .. ..+.. . ...|.++....++ ..|.
T Consensus 146 ~~i~~i~~d~~-g~lWi-gt~~G-l~~~~~~~~-~~-~~~~~~~~~~~~~~~i~~i~~d~~~--------------~~lW 206 (758)
T 3ott_A 146 NTIYSIIRTKD-NQIYV-GTYNG-LCRYIPSNG-KF-EGIPLPVHSSQSNLFVNSLLEDTTR--------------QCVW 206 (758)
T ss_dssp SCEEEEEECTT-CCEEE-EETTE-EEEEETTTT-EE-EEECCCCCTTCSSCCEEEEEEETTT--------------TEEE
T ss_pred CeEEEEEEcCC-CCEEE-EeCCC-HhhCccCCC-ce-EEecCCCccccccceeEEEEEECCC--------------CEEE
Confidence 46888887664 44443 44444 667776332 22 12211 1 1235555555443 3344
Q ss_pred EEeCCCcEEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEe--------cCCceE
Q psy307 410 SCSMDCRVKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFT--------SRKVAY 481 (1019)
Q Consensus 410 sgs~Dg~I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~--------~~~~v~ 481 (1019)
.|+. +-+..+|.. .+.......-....|.++....+|...+ |+. +-+.++|..++....... ....+.
T Consensus 207 igt~-~Gl~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 207 IGTE-GYLFQYFPS-TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEE-EEEEEEETT-TTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred EEEC-CCCeEEcCC-CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 4443 457778863 3332221111234588888887776544 454 458888887765432221 112356
Q ss_pred EEEEecCCCeeeeccCCCceeee---------------CCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccce
Q psy307 482 CVKFHPDEDKQHLDIPVDMKYIA---------------DPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRK 546 (1019)
Q Consensus 482 ~v~~~p~~~~~~~~~~~~~~~i~---------------~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~ 546 (1019)
++....++.. .+....+..... ......|.++....+|.+.+ |+.+ -+..++..++.. ...
T Consensus 283 ~i~~D~~g~l-WiGT~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~-~~~ 358 (758)
T 3ott_A 283 NIFADQEHNI-WLGTDYGISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGER-HDA 358 (758)
T ss_dssp EEEECTTCCE-EEEESSSEEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSC-CCC
T ss_pred EEEEcCCCCE-EEEeCCcccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCC-cceeeccccccc-cee
Confidence 6655544432 111111111100 01123466777777776554 4544 466666543211 011
Q ss_pred eEEec-----cccccceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeee-c-----cCCCEEEEEEcCCCCcEEEE
Q psy307 547 KTFEG-----HMVAGYACSLDFSPDMSYLISGDADGKCYIWDWKTTKLFKKWK-A-----HDGVCISTLWHPHEPSKVVT 615 (1019)
Q Consensus 547 ~~l~g-----h~~~~~V~~v~fspdg~~Lasgs~DG~I~IWDl~t~~~l~~l~-~-----h~~~V~sl~~sp~~~~~l~s 615 (1019)
..+.. ......|.++.-..+|++.+ |+ ++-|..||..+++...-.. . ....|.++.-.+++ .|..
T Consensus 359 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWi 434 (758)
T 3ott_A 359 IWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWI 434 (758)
T ss_dssp EEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEE
T ss_pred EEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEE
Confidence 11210 01124588888888887554 44 3469999988775432211 1 12357888776665 4555
Q ss_pred EeCCCcEEEEe
Q psy307 616 AGWDAATAKVQ 626 (1019)
Q Consensus 616 ~s~Dg~I~iww 626 (1019)
|+..+-+.++.
T Consensus 435 gT~~~Gl~~~~ 445 (758)
T 3ott_A 435 STCLGGIFVVD 445 (758)
T ss_dssp EESSSCEEEEE
T ss_pred EECCCceEEEc
Confidence 66655565553
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.57 E-value=78 Score=38.04 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.7
Q ss_pred cEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEec
Q psy307 438 AVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTS 476 (1019)
Q Consensus 438 ~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~ 476 (1019)
.|.++.+ +..++++-+.|.++|+||+.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 467999999999999999999999988765
No 365
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.81 E-value=6.8e+02 Score=27.34 Aligned_cols=61 Identities=2% Similarity=0.056 Sum_probs=36.8
Q ss_pred EEEEc-CCCCEEEEEecCCeEEEEEccC-cccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 513 AVTSS-PNNKWLACQSMDNKILIFSALN-RFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 513 ~v~~s-pdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.+++. .+|.++++--..+.|..|+..+ .........+.....-.++..+.+.++|.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 45665 6788888888889999999876 4322222333222222456777776666544444
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.50 E-value=6.5e+02 Score=26.99 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=35.5
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeeeec-----c--------CCCEEEEEEcCCCCcEEEEEeCCCcE
Q psy307 557 YACSLDFSPD-MSYLISGDADGKCYIWDWKTTKLFKKWKA-----H--------DGVCISTLWHPHEPSKVVTAGWDAAT 622 (1019)
Q Consensus 557 ~V~~v~fspd-g~~Lasgs~DG~I~IWDl~t~~~l~~l~~-----h--------~~~V~sl~~sp~~~~~l~s~s~Dg~I 622 (1019)
.+.+|.++|. ...|..+..++.|...+ ..++....+.. + ...+.++.++|..+..|+.+...| |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 4778999883 34455554455454432 22333222211 0 124889999997545666665443 4
Q ss_pred EEE
Q psy307 623 AKV 625 (1019)
Q Consensus 623 ~iw 625 (1019)
.+.
T Consensus 256 ~~s 258 (394)
T 3b7f_A 256 YRM 258 (394)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 367
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=24.04 E-value=46 Score=20.75 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCcccccccc
Q psy307 926 EDFVKVVLENSCRADEHECPF 946 (1019)
Q Consensus 926 ~~f~~~~~e~~~~~~~~~~p~ 946 (1019)
+-|.-++.=|++|-+.+||+=
T Consensus 3 ~ff~ml~kcq~srlddqrcap 23 (26)
T 4g5s_E 3 DFFDILVKCQGSRLDDQRCAP 23 (26)
T ss_dssp CHHHHHHHHSCCCCSSSCBCC
T ss_pred hHHHHHHHhcccccccccCCC
Confidence 457788888999999999973
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=23.70 E-value=1e+03 Score=28.63 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=35.1
Q ss_pred ccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCcEEEEEccCCCeEEEEEccc-------cccEeEEEEecCC-CEE
Q psy307 380 QAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCRVKLWEVYKEHRCVRTYYGH-------RQAVRDICFNNTG-TNF 451 (1019)
Q Consensus 380 ~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~l~~H-------~~~V~sl~fspdg-~~l 451 (1019)
..|.+|+++|.. +..++.++..+.|...+ ..+..-..+..+ ...|.+|+++|.. ..+
T Consensus 15 g~i~~i~~~p~~-------------~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i 79 (789)
T 1sqj_A 15 GYITGIVAHPKT-------------KDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRL 79 (789)
T ss_dssp SCEEEEEECSSS-------------TTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEE
T ss_pred CcEEEEEECCCC-------------CCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEE
Confidence 456666666543 46677777777665544 344333333332 2469999999853 344
Q ss_pred EEEE
Q psy307 452 ISAG 455 (1019)
Q Consensus 452 ~S~s 455 (1019)
+.+.
T Consensus 80 ~~~~ 83 (789)
T 1sqj_A 80 YLAQ 83 (789)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.55 E-value=2e+02 Score=33.75 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=37.8
Q ss_pred ccEEEEcCCCCEEEEEecC------------CeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEE
Q psy307 511 MPAVTSSPNNKWLACQSMD------------NKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISG 573 (1019)
Q Consensus 511 i~~v~~spdg~~Lasgs~D------------g~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasg 573 (1019)
.-.|+|+|.|.++++-..+ +.+.+.+..++ .....+.++ ....++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g---~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG---EIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC---CEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC---eEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 3468999999866654322 24555555444 223334444 34679999999999987765
No 370
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=21.14 E-value=6.9e+02 Score=25.70 Aligned_cols=218 Identities=14% Similarity=0.041 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCcEEEEeeCCCeEEEEecCCCcEEEEEecccCccEeEEEEcCCCCceeEEEeecCCCCcEEEEEeCCCc
Q psy307 337 GISAIRWFPKSAHLLLSCSMDCRVKLWEVYKERRCVRTYYGHRQAVRDICFNNTGTNFISAIRWFPKSAHLLLSCSMDCR 416 (1019)
Q Consensus 337 ~V~~i~fspd~g~lLaSgs~Dg~I~IWdl~~~~~~~~~~~gh~~~V~~i~fspdg~~~vs~i~~~p~~~~~L~sgs~Dg~ 416 (1019)
.|..|+.-. .+.++. . ||.|..|-....+++-.. ......|..|+.... +.++. . ||.
T Consensus 25 ~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~---------------hs~~l-~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY---------------HSLAL-K-DGE 82 (282)
T ss_dssp SCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS---------------EEEEE-E-TTE
T ss_pred CCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC---------------EEEEE-E-CCE
Confidence 577777543 344554 4 999999976443321100 011224555554432 23444 4 899
Q ss_pred EEEEEccCCCeEEEEEccccccEeEEEEecCCCEEEEEEcCCeEEEEECCCCceEEEEecCCceEEEEEecCCCeeeecc
Q psy307 417 VKLWEVYKEHRCVRTYYGHRQAVRDICFNNTGTNFISAGYDRYLKLWDTESGECISRFTSRKVAYCVKFHPDEDKQHLDI 496 (1019)
Q Consensus 417 I~IWDl~~~~~~~~~l~~H~~~V~sl~fspdg~~l~S~s~Dg~I~lWDl~t~~~i~~~~~~~~v~~v~~~p~~~~~~~~~ 496 (1019)
|..|-....+++-. -..-...|..|+.... ..+... ||.|..|-....-.+. .
T Consensus 83 v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-----------------------~ 135 (282)
T 3qhy_B 83 VIAWGGNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-----------------------V 135 (282)
T ss_dssp EEEEECCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-----------------------C
T ss_pred EEEeeCCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-----------------------C
Confidence 99998644333211 0111235766666543 333444 9999999754321100 0
Q ss_pred CCCceeeeCCCCCcccEEEEcCCCCEEEEEecCCeEEEEEccCcccccceeEEeccccccceEEEEEcCCCCEEEEEeCC
Q psy307 497 PVDMKYIADPTMHSMPAVTSSPNNKWLACQSMDNKILIFSALNRFKLNRKKTFEGHMVAGYACSLDFSPDMSYLISGDAD 576 (1019)
Q Consensus 497 ~~~~~~i~~~~~~~i~~v~~spdg~~Lasgs~Dg~I~iwd~~~~~~~~~~~~l~gh~~~~~V~~v~fspdg~~Lasgs~D 576 (1019)
+ ......|..++.... ..+.-. ||.|..|-......+.. . ......|..++...+.. ++. .|
T Consensus 136 ~-------~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~-p----~~~~~~v~~i~~G~~hs-~al--~~ 197 (282)
T 3qhy_B 136 P-------AEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTV-P----AEAQSGVDDVAGGIFHS-LAL--KD 197 (282)
T ss_dssp C-------GGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSC-C----GGGGSSEEEEEECSSEE-EEE--ET
T ss_pred C-------ccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCC-c----eecCCCeEEEEecCCEE-EEE--EC
Confidence 0 000122333333222 222233 78888887654322210 0 00113466666644332 333 59
Q ss_pred CeEEEEeCCCCceeeeeeccCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q psy307 577 GKCYIWDWKTTKLFKKWKAHDGVCISTLWHPHEPSKVVTAGWDAATAKV 625 (1019)
Q Consensus 577 G~I~IWDl~t~~~l~~l~~h~~~V~sl~~sp~~~~~l~s~s~Dg~I~iw 625 (1019)
|.|+.|=....-.+..-......|..++-.... .++.. ||.++.|
T Consensus 198 G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g~v~~w 242 (282)
T 3qhy_B 198 GKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NGKVIAW 242 (282)
T ss_dssp TEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TTEEEEE
T ss_pred CeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CCEEEEe
Confidence 999999765421111111112346667654432 33333 8888766
Done!