BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3073
         (303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PM2|A Chain A, Crystal Structure Of A Novel Type Of Odorant Binding
           Protein From Anopheles Gambiae Belonging To The C+ Class
          Length = 173

 Score = 32.3 bits (72), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 166 SFQTSVDFTGSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTV 213
           S +  ++    +T  F+ EQI + ++ T L C+ +T+F+   +  FTV
Sbjct: 109 SIKDEIEAGAKLTPAFEGEQICHPISGTILACMGMTLFAECPAKLFTV 156



 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 123 FRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFS 166
           F+    I   I   + +T  F+ EQI + ++ T L C+ +T+F+
Sbjct: 104 FKMADSIKDEIEAGAKLTPAFEGEQICHPISGTILACMGMTLFA 147


>pdb|3HN0|A Chain A, Crystal Structure Of An Abc Transporter (bdi_1369) From
           Parabacteroides Distasonis At 1.75 A Resolution
 pdb|3HN0|B Chain B, Crystal Structure Of An Abc Transporter (bdi_1369) From
           Parabacteroides Distasonis At 1.75 A Resolution
          Length = 283

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 82  RRSYPLNYVFLMLFTIVQGITLGSVT 107
           R  YPLNY F     I QGI  G V 
Sbjct: 120 RLDYPLNYAFNTAGEITQGILAGKVN 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.143    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,870,026
Number of Sequences: 62578
Number of extensions: 229667
Number of successful extensions: 572
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 5
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)