Query psy3073
Match_columns 303
No_of_seqs 127 out of 1294
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 01:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06181 BI-1-like BAX inhibito 100.0 8.4E-39 1.8E-43 287.4 25.9 212 18-302 1-212 (212)
2 PRK10447 HflBKC-binding inner 100.0 2.6E-38 5.7E-43 287.6 24.4 206 13-302 11-216 (219)
3 KOG2322|consensus 100.0 3E-39 6.5E-44 292.9 14.2 202 10-287 35-237 (237)
4 COG0670 Integral membrane prot 100.0 2.5E-35 5.5E-40 270.4 24.4 229 1-303 1-233 (233)
5 PF01027 Bax1-I: Inhibitor of 100.0 1.5E-31 3.4E-36 237.0 23.3 202 20-299 1-205 (205)
6 KOG1629|consensus 99.9 8.7E-24 1.9E-28 187.5 18.0 214 3-302 9-223 (235)
7 KOG1630|consensus 99.8 3.4E-19 7.4E-24 163.6 14.0 212 16-301 109-331 (336)
8 PF12811 BaxI_1: Bax inhibitor 99.3 1.2E-09 2.5E-14 102.9 22.3 118 182-301 143-270 (274)
9 KOG2322|consensus 98.1 2.1E-06 4.6E-11 79.0 2.8 31 178-208 132-162 (237)
10 COG4760 Predicted membrane pro 97.8 0.0024 5.2E-08 58.3 16.8 118 180-301 139-272 (276)
11 PRK10447 HflBKC-binding inner 96.7 0.023 5.1E-07 52.3 11.3 36 146-181 104-139 (219)
12 cd06181 BI-1-like BAX inhibito 96.2 0.29 6.3E-06 43.9 15.6 81 64-181 50-130 (212)
13 PF01027 Bax1-I: Inhibitor of 95.3 0.2 4.3E-06 44.2 10.4 60 84-180 68-127 (205)
14 COG0670 Integral membrane prot 67.1 26 0.00057 32.5 7.7 34 146-179 115-148 (233)
15 PF12805 FUSC-like: FUSC-like 37.4 2.7E+02 0.0057 26.1 9.3 13 155-167 4-16 (284)
16 PF12273 RCR: Chitin synthesis 34.9 28 0.0006 29.0 2.0 7 71-77 15-21 (130)
17 PF09925 DUF2157: Predicted me 33.9 2.9E+02 0.0062 23.2 11.4 25 82-106 85-109 (145)
18 PF06123 CreD: Inner membrane 23.9 7.8E+02 0.017 25.1 12.8 29 64-93 304-332 (430)
19 PF04834 Adeno_E3_14_5: Early 22.5 88 0.0019 25.5 2.8 28 146-173 22-49 (97)
20 PRK15035 cytochrome bd-II oxid 20.4 1E+03 0.022 25.0 16.0 53 184-236 186-238 (514)
No 1
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=8.4e-39 Score=287.39 Aligned_cols=212 Identities=41% Similarity=0.740 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHH
Q psy3073 18 VRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLRRSYPLNYVFLMLFTI 97 (303)
Q Consensus 18 ~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~r~~p~n~~~l~~ft~ 97 (303)
.|++|+||||+++++|+++|++.+......|+.++ ...+++..|+..++.+++.+.+.|.+..+|++|.|++++.+||.
T Consensus 1 ~~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~ 79 (212)
T cd06181 1 IRRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTA 79 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 37889999999999999999998888877777766 55666777877777888888888778889999999999999999
Q ss_pred HHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHhhhccccccccccce
Q psy3073 98 VQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTGSV 177 (303)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~~~~~q~~~d~~~~~ 177 (303)
.+|+++++++
T Consensus 80 ~~g~~l~~~~---------------------------------------------------------------------- 89 (212)
T cd06181 80 LMGVTLGPIL---------------------------------------------------------------------- 89 (212)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999999984
Q ss_pred eeccChhHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy3073 178 TVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFPSKTLVFLMGCAGAVLFSLYLL 257 (303)
Q Consensus 178 ~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~lv~iF~~~~~l~~iis~lgvvlFs~yii 257 (303)
..+++..+.+|+.+|+++|++++++|+++|+|++++|+++++++.++++.+++++|++++..+.+++++|+++|++|++
T Consensus 90 -~~~~~~~i~~A~~~T~~if~~l~l~a~~tk~d~~~~g~~l~~~~~~l~~~~l~~~f~~~~~~~~~~~~~g~~lf~~~l~ 168 (212)
T cd06181 90 -SVYTAASVLQAFGITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISALGVLLFSGYIL 168 (212)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 2345667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3073 258 YDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMSTQ 302 (303)
Q Consensus 258 yDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg~~ 302 (303)
||||++++++ +.+.++|||+.||+++|+|++|+|+++||++|++
T Consensus 169 ~Dtq~i~~~~-~~~~~~~d~i~~al~LylDiinlF~~iL~il~~~ 212 (212)
T cd06181 169 YDTQLIIGGY-RLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHHHHhh-hhccCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999998865 3346899999999999999999999999999875
No 2
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=287.63 Aligned_cols=206 Identities=19% Similarity=0.257 Sum_probs=171.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHH
Q psy3073 13 FKESSVRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLRRSYPLNYVFL 92 (303)
Q Consensus 13 ~~~~~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~r~~p~n~~~l 92 (303)
-++...+++++||||.+++++++.++++..+....+. +.+..+...+..+++.+.. ..+|++|.|++++
T Consensus 11 ~~~~~~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~~-------~~~~~~~~~~~~~gl~~~~----~~~~~~~~~~~ll 79 (219)
T PRK10447 11 RTSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLML-------PSPGLILTLVGMYGLMFLT----YKTANKPTGILSA 79 (219)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHH----HHHHcCCHHHHHH
Confidence 3334458889999999999999999987766542111 1111234445555555543 3468999999999
Q ss_pred HHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHhhhccccccc
Q psy3073 93 MLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVD 172 (303)
Q Consensus 93 ~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~~~~~q~~~d 172 (303)
..||.++|+++||++.+|
T Consensus 80 f~fT~~~G~~lg~i~~~y-------------------------------------------------------------- 97 (219)
T PRK10447 80 FAFTGFLGYILGPILNTY-------------------------------------------------------------- 97 (219)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999999995210
Q ss_pred cccceeeccChhHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q psy3073 173 FTGSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFPSKTLVFLMGCAGAVLF 252 (303)
Q Consensus 173 ~~~~~~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~lv~iF~~~~~l~~iis~lgvvlF 252 (303)
....+|++|.+|+++|+++|++++++|++||||++++|++++.+++++++++++++|++++..+.+++++|+++|
T Consensus 98 -----~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk~Dfs~lg~~L~~~l~~li~~~l~~~F~~s~~~~~~~s~~g~llf 172 (219)
T PRK10447 98 -----LSAGMGDVIALALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVFILIS 172 (219)
T ss_pred -----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 012357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3073 253 SLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMSTQ 302 (303)
Q Consensus 253 s~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg~~ 302 (303)
++|++||||+|++| ++|||+.||++||+|++|+|+++|||+|++
T Consensus 173 sgyilyDTq~Ii~~------g~~dyi~aAl~LYlDiinlFl~lL~il~~~ 216 (219)
T PRK10447 173 SGAILFETSNIIHG------GETNYIRATVSLYVSLYNIFVSLLSILGFA 216 (219)
T ss_pred HHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999853 479999999999999999999999999964
No 3
>KOG2322|consensus
Probab=100.00 E-value=3e-39 Score=292.92 Aligned_cols=202 Identities=43% Similarity=0.769 Sum_probs=176.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhccchhHH
Q psy3073 10 RSDFKESSVRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLRRSYPLNY 89 (303)
Q Consensus 10 ~~~~~~~~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~r~~p~n~ 89 (303)
...+.|+++|++|+||||+++..|+++|++.++.+...++.++|+.+|+|.+|.+.++.+++.+.+.|+.+.|||+|.|+
T Consensus 35 ~~~~~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N~ 114 (237)
T KOG2322|consen 35 PGAFCDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVNL 114 (237)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHHH
Confidence 33788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHhhhcccc
Q psy3073 90 VFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQT 169 (303)
Q Consensus 90 ~~l~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~~~~~q~ 169 (303)
+++.+||.+++.+.|..+ -+||..+||.|++||.+||+++++|+.||
T Consensus 115 ilL~iFT~a~s~~~g~~~---------------------------------a~~~~~~VL~Al~IT~~V~~slt~~t~qt 161 (237)
T KOG2322|consen 115 ILLGIFTLAEAFMTGLVT---------------------------------AFYDAKVVLLALIITTVVVLSLTLFTLQT 161 (237)
T ss_pred hHHHHHHHHHHHHHHHHH---------------------------------HHHhhHHHHHHHHHHHhheeeEEEEEEee
Confidence 999999999999999873 46777777777777777777777777665
Q ss_pred ccccccceeeccChhHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH-HHHHHcChhHHHHHHHHHH
Q psy3073 170 SVDFTGSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFS-LVVIFFPSKTLVFLMGCAG 248 (303)
Q Consensus 170 ~~d~~~~~~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~-lv~iF~~~~~l~~iis~lg 248 (303)
|+|| +..|+.++..++++++++ +..+|...+.++.+++.+|
T Consensus 162 K~DF--------------------------------------t~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya~lg 203 (237)
T KOG2322|consen 162 KYDF--------------------------------------TSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALG 203 (237)
T ss_pred ccch--------------------------------------hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555 555666777777777777 4444557899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHH
Q psy3073 249 AVLFSLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVD 287 (303)
Q Consensus 249 vvlFs~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLD 287 (303)
+++|++|++||||++++ +.+|||||.||+++|+|
T Consensus 204 Allf~~yl~~Dtqllm~-----~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 204 ALLFCGYLVYDTQLLMG-----RISPEEYIFAALNLYLD 237 (237)
T ss_pred HHHHhHHHHhhhHHHhc-----cCCHHHHHHHHHHhhcC
Confidence 99999999999999986 56899999999999998
No 4
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=270.43 Aligned_cols=229 Identities=26% Similarity=0.414 Sum_probs=188.4
Q ss_pred CCCccccCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q psy3073 1 MMNYESLMGRS-DFKESSVRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQ 79 (303)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 79 (303)
|.+++++..+. ++++++.|++|++|||.+++.++++|++.++...+.+...... .++++.++..+..+...+... +
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~-~~~~~~~vl~~a~l~~~~~~~--~ 77 (233)
T COG0670 1 MNMFDRSYSRIQAFKSDLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLL-SLSPPGFVLIIAGLAGVFFLS--R 77 (233)
T ss_pred CCcchhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHH--H
Confidence 44455555544 4555588999999999999999999988766654433322211 445666776776667666653 5
Q ss_pred hhhccchhHHHHHHHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHH
Q psy3073 80 DLRRSYPLNYVFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLIC 159 (303)
Q Consensus 80 ~~~r~~p~n~~~l~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~ 159 (303)
+.+|+.|.+...+..||..+|++++++.. .|
T Consensus 78 ~~~~s~~~~~~~~~~~t~l~G~tL~~i~~---------------------------------~Y---------------- 108 (233)
T COG0670 78 KINKSSPTALILFFVYTALVGLTLSPILL---------------------------------VY---------------- 108 (233)
T ss_pred HhccCcchHHHHHHHHHHHHHHHHHHHHH---------------------------------HH----------------
Confidence 66679999999999999999999999941 11
Q ss_pred hHHhhhccccccccccceeeccChhHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHcChhH
Q psy3073 160 LAITIFSFQTSVDFTGSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFPSKT 239 (303)
Q Consensus 160 ~~~~~~~~q~~~d~~~~~~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~lv~iF~~~~~ 239 (303)
....++..+.+|+..|+++|+++++|++++|+|++++|+.++++++++++++++|+|+++|.
T Consensus 109 ------------------~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~s~~ 170 (233)
T COG0670 109 ------------------AAISGGDAIAAAFGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSA 170 (233)
T ss_pred ------------------HhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 12223367999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh---cCC
Q psy3073 240 LVFLMGCAGAVLFSLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMS---TQE 303 (303)
Q Consensus 240 l~~iis~lgvvlFs~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg---~~~ 303 (303)
++.++|.+|+++|+++++||||+|++. +.+++.++.+|++||+|++|+|+++||++| +||
T Consensus 171 l~~~IS~lgvlifsgli~yDtq~I~~~----~~~~~~~i~~AlsLYldfiNlF~~LL~i~g~~~~r~ 233 (233)
T COG0670 171 LHLAISVLGVLIFSGLIAYDTQNIKRM----EGGERLAIMGALSLYLDFINLFLSLLRILGILSNRR 233 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999762 456899999999999999999999999998 665
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=100.00 E-value=1.5e-31 Score=237.04 Aligned_cols=202 Identities=41% Similarity=0.778 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhccchhH--HHHHHHHHH
Q psy3073 20 QAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLRRSYPLN--YVFLMLFTI 97 (303)
Q Consensus 20 ~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~r~~p~n--~~~l~~ft~ 97 (303)
|+|+||||++++.|+.+|++........| .+...+++..|.+.++.+++.+...+.++.+|++|.| +..+..||.
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ 77 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASP---LFLSQHFPLSWVSLIVSLVLLIFLYILFNRRRRFPSNVALILLFIFTL 77 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 46899999999999999966555444444 3444556777777777777775555555455555555 999999999
Q ss_pred HHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHhhhccccccccccce
Q psy3073 98 VQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTGSV 177 (303)
Q Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~~~~~q~~~d~~~~~ 177 (303)
.+|..++++.
T Consensus 78 ~~g~~~~~i~---------------------------------------------------------------------- 87 (205)
T PF01027_consen 78 LEGLLLGPIS---------------------------------------------------------------------- 87 (205)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999999883
Q ss_pred eeccChhHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy3073 178 TVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFPSKTLVFLMGCAGAVLFSLYLL 257 (303)
Q Consensus 178 ~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~lv~iF~~~~~l~~iis~lgvvlFs~yii 257 (303)
..++++++.+|+..|+++|+++++++.++|+|++.+++++..++.++++++++++|++++..+.+++++|+++|+++++
T Consensus 88 -~~~~~~~v~~a~~~T~~if~~l~~~a~~~~~d~~~~~~~l~~~l~~l~i~~l~~~f~~~~~~~~~is~~~~~lf~~~l~ 166 (205)
T PF01027_consen 88 -SFYDPSIVLQAFLLTAAIFIALTLYAFFTKRDFTRWGGILFIGLIGLIIFGLVSIFLPSSPLYLLISYIGILLFSLYLV 166 (205)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2345888999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhccccccCCCchHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy3073 258 YDTQLMMGGQHKYALSPEEY-IFAALNLYVDIIQIFLSILQIM 299 (303)
Q Consensus 258 yDtQ~Ii~g~~~~~~~~ddy-I~aAL~LYLDiINLFl~IL~IL 299 (303)
||||++++ ++.++||+ +.+|+++|+|++|+|+++||++
T Consensus 167 ~Dt~~i~~----~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 167 YDTQRIIR----RYFSPDDYAIIAALSLYLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHH----HHccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999964 22346666 9999999999999999999985
No 6
>KOG1629|consensus
Probab=99.92 E-value=8.7e-24 Score=187.49 Aligned_cols=214 Identities=20% Similarity=0.305 Sum_probs=173.0
Q ss_pred CccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3073 3 NYESLMGRSDFKESSVRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLR 82 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 82 (303)
|||..++. +--+|.+|++ ++|||..++..+..++.+..+ +.++ | ....++.+..+++++.+.|.+.
T Consensus 9 ~fd~l~n~-~~~sP~vq~H-LkkvY~tl~~~~~asA~GAyl-----hM~~----n-igG~lsalg~l~~miwl~~~py-- 74 (235)
T KOG1629|consen 9 SFDALLNF-SHISPAVQNH-LKKVYLTLALALFASAAGAYL-----HMVW----N-IGGLLSALGSLGLMIWLMFTPY-- 74 (235)
T ss_pred hHHHHhcc-ccCCHHHHHH-HHHHHHHHHHHHHHHHhhhHH-----Hhhh----h-ccchHHHHHHHHHHHHHhCCCC--
Confidence 45556653 3445777765 999999999998887765332 2221 1 1123555666677777655322
Q ss_pred ccchhHHHHHHHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHH
Q psy3073 83 RSYPLNYVFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAI 162 (303)
Q Consensus 83 r~~p~n~~~l~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~ 162 (303)
++..++-++.+|+++.|-++||.+..
T Consensus 75 -~hk~rl~lL~~fa~l~GasvGP~i~~----------------------------------------------------- 100 (235)
T KOG1629|consen 75 -EHKTRLGLLFLFAFLTGASVGPLIKF----------------------------------------------------- 100 (235)
T ss_pred -ccchhHHHHHHHHHHcCCcccchhhh-----------------------------------------------------
Confidence 23348889999999999999999521
Q ss_pred hhhccccccccccceeeccChhHHHHHHHHHHHHHHHHHHHHHhc-cccccchhHHHHHHHHHHHHHHHHHHHcChhHHH
Q psy3073 163 TIFSFQTSVDFTGSVTVVFDAEQILYAVAITSLICLAITIFSFQT-SVDFTVWGGFLCIATLVMFLFSLVVIFFPSKTLV 241 (303)
Q Consensus 163 ~~~~~q~~~d~~~~~~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~t-k~Dft~lg~~L~~~l~~Liv~~lv~iF~~~~~l~ 241 (303)
+.-.+|+++.+|+.+|+++|.|+++.|... +|+..++|+.|..++..+...++.+.++++.+..
T Consensus 101 ---------------~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l~n~~fgS~~v~ 165 (235)
T KOG1629|consen 101 ---------------CIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSLANSFFGSIWVF 165 (235)
T ss_pred ---------------eeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456799999999999999999999999775 6889999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3073 242 FLMGCAGAVLFSLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMSTQ 302 (303)
Q Consensus 242 ~iis~lgvvlFs~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg~~ 302 (303)
..-.++|+++|++|+++|||.|++ +.+.++.||+.||+.+|.|++.+|.++|.|+-.+
T Consensus 166 ~~qLY~Gllvfvg~ivvdTQ~IiE---Kah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~~ 223 (235)
T KOG1629|consen 166 KFQLYVGLLVFVGFIVVDTQEIIE---KAHHGDMDYVQHSLDLFTDFVSVFRRILIILAMN 223 (235)
T ss_pred HHHHHHHHHHhheeEEeeHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999997 5667899999999999999999999999998753
No 7
>KOG1630|consensus
Probab=99.81 E-value=3.4e-19 Score=163.57 Aligned_cols=212 Identities=23% Similarity=0.295 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHH
Q psy3073 16 SSVRQAFVRKVYSILMVQLAITTAIISLFLF-NPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLRRSYPLNYVFLML 94 (303)
Q Consensus 16 ~~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~r~~p~n~~~l~~ 94 (303)
..+|.+ +..+|.+++.++.+|++- +.+.+ ++.+.++..+..|...+..+...+..-.++.+-+.+..+..+...+.+
T Consensus 109 qyVrdR-I~sTYay~~gS~~lTA~s-avA~~rs~~lm~l~~rgg~va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~l 186 (336)
T KOG1630|consen 109 QYVRDR-IHSTYAYLAGSCGLTAAS-AVAISRSPALMNLMMRGGWVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLL 186 (336)
T ss_pred HHHHHH-HHHHHHHHhccHHHHHHH-HHHHhccHHHHHHHhcCchHHHHHHHHHHHhcchhhhcccCCCCccHHHHHHHH
Confidence 467777 889999999999999864 44444 566677776665544433333333333344333444445578999999
Q ss_pred HHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHhhhccccccccc
Q psy3073 95 FTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFT 174 (303)
Q Consensus 95 ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~~~~~q~~~d~~ 174 (303)
.....|-+++|+|
T Consensus 187 Hc~vlGAV~APlc------------------------------------------------------------------- 199 (336)
T KOG1630|consen 187 HCGVLGAVVAPLC------------------------------------------------------------------- 199 (336)
T ss_pred HHHHHHHHHhhHH-------------------------------------------------------------------
Confidence 9999999999995
Q ss_pred cceeeccChhHHHHHHHHHHHHHHHHHHHHHhccc-cccchhHHHHHHHHHHHHHHHHHHHcCh-----hHHHHHHHHHH
Q psy3073 175 GSVTVVFDAEQILYAVAITSLICLAITIFSFQTSV-DFTVWGGFLCIATLVMFLFSLVVIFFPS-----KTLVFLMGCAG 248 (303)
Q Consensus 175 ~~~~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk~-Dft~lg~~L~~~l~~Liv~~lv~iF~~~-----~~l~~iis~lg 248 (303)
..+..+...|...|++|+++++..|...+. .|..+|+.|.+++.++++.++.++|++. ..+..+..+.|
T Consensus 200 -----~lgGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlGvVFvssl~sm~LPPtta~GA~LaSmslYGG 274 (336)
T KOG1630|consen 200 -----FLGGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLGVVFVSSLGSMFLPPTTALGAGLASMSLYGG 274 (336)
T ss_pred -----hcccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCceeeeeeEehhhhhhhhcCCchhhhhhhHHHHHhcc
Confidence 235678899999999999999999988875 5889999999999999999999999873 24678889999
Q ss_pred HHHHHHHHHHHHHHHhccccccC----CCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3073 249 AVLFSLYLLYDTQLMMGGQHKYA----LSPEEYIFAALNLYVDIIQIFLSILQIMST 301 (303)
Q Consensus 249 vvlFs~yiiyDtQ~Ii~g~~~~~----~~~ddyI~aAL~LYLDiINLFl~IL~ILg~ 301 (303)
+++|++|++||||++.+..++|. ...-|+|-+++++|+|..|+|+|+..|+|+
T Consensus 275 LiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv~il~g 331 (336)
T KOG1630|consen 275 LILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIVMILGG 331 (336)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999986554553 234689999999999999999999999985
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=99.28 E-value=1.2e-09 Score=102.90 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=97.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHHc--------ChhHHHHHHHHHHHHH
Q psy3073 182 DAEQILYAVAITSLICLAITIFSFQTS--VDFTVWGGFLCIATLVMFLFSLVVIFF--------PSKTLVFLMGCAGAVL 251 (303)
Q Consensus 182 ~~~~I~~A~~~Ta~ifi~Lsl~a~~tk--~Dft~lg~~L~~~l~~Liv~~lv~iF~--------~~~~l~~iis~lgvvl 251 (303)
-|+++.+|...|.++|++|.+ .++++ |--.++.++...+..+..++.++++.+ .+.++.+.+|.+++++
T Consensus 143 ~pGIv~qAvl~T~~vf~~ml~-lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~l~~~gplgI~~slv~v~i 221 (274)
T PF12811_consen 143 YPGIVFQAVLGTFGVFAVMLA-LYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGSLRDGGPLGIGFSLVVVGI 221 (274)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-HHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHH
Confidence 378999999999999998864 55554 333477888888887777777777522 1356789999999999
Q ss_pred HHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3073 252 FSLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMST 301 (303)
Q Consensus 252 Fs~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg~ 301 (303)
=+..++.|.+.+.+|- +++.+++..+.+|++|=..++++|+++||+|+.
T Consensus 222 Aa~sLllDFd~Ie~~v-~~gaPk~~eW~~AfGL~vTLVWLYlEILRLL~~ 270 (274)
T PF12811_consen 222 AALSLLLDFDFIEQGV-RQGAPKKMEWYAAFGLLVTLVWLYLEILRLLSK 270 (274)
T ss_pred HHHHHHhhHHHHHHHH-HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998775 677778888999999999999999999999984
No 9
>KOG2322|consensus
Probab=98.07 E-value=2.1e-06 Score=79.01 Aligned_cols=31 Identities=39% Similarity=0.720 Sum_probs=28.3
Q ss_pred eeccChhHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3073 178 TVVFDAEQILYAVAITSLICLAITIFSFQTS 208 (303)
Q Consensus 178 ~~~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk 208 (303)
...+++.+|++|+.+|+++++++++|+.++|
T Consensus 132 ~a~~~~~~VL~Al~IT~~V~~slt~~t~qtK 162 (237)
T KOG2322|consen 132 TAFYDAKVVLLALIITTVVVLSLTLFTLQTK 162 (237)
T ss_pred HHHHhhHHHHHHHHHHHhheeeEEEEEEeec
Confidence 5678899999999999999999999999885
No 10
>COG4760 Predicted membrane protein [Function unknown]
Probab=97.76 E-value=0.0024 Score=58.34 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.1
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhHHHHHHHHH---HHHHHHHH-HHcC--hh------HHHHHHH
Q psy3073 180 VFDAEQILYAVAITSLICLAITIFSFQTS--VDFTVWGGFLCIATLV---MFLFSLVV-IFFP--SK------TLVFLMG 245 (303)
Q Consensus 180 ~~~~~~I~~A~~~Ta~ifi~Lsl~a~~tk--~Dft~lg~~L~~~l~~---Liv~~lv~-iF~~--~~------~l~~iis 245 (303)
......|.+|...|.++|.+|. ..++|. |--.+....+..+..+ +++..++. +|.+ .| ...+++|
T Consensus 139 anaGgligqAvLgT~Gvf~gML-~vYktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFS 217 (276)
T COG4760 139 ANAGGLIGQAVLGTFGVFFGML-VVYKTGAIKVTPKFTRMVVAATFGVLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFS 217 (276)
T ss_pred ccccceeHHHHHHHHHHHHHHH-HHHhcCceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceEeeHH
Confidence 3345688999999999999995 566663 2223444444444444 33333333 2322 22 2345666
Q ss_pred HHHHHH--HHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3073 246 CAGAVL--FSLYLLYDTQLMMGGQHKYALSPEEYIFAALNLYVDIIQIFLSILQIMST 301 (303)
Q Consensus 246 ~lgvvl--Fs~yiiyDtQ~Ii~g~~~~~~~~ddyI~aAL~LYLDiINLFl~IL~ILg~ 301 (303)
..++.+ |+..+-+| .+-++- +....++..+..|++|-...+++|+++||+++.
T Consensus 218 LfcigiAAf~fllDFD--aad~~v-r~GAP~kmaWgvAlGL~VTLVWLY~EiLRLLSy 272 (276)
T COG4760 218 LFCIGIAAFSFLLDFD--AADQMV-RAGAPEKMAWGVALGLTVTLVWLYLEILRLLSY 272 (276)
T ss_pred HHHHHHHHHHHHhhhh--HHHHHH-HcCChhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555544 55555555 433322 334456778999999999999999999999983
No 11
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=96.67 E-value=0.023 Score=52.26 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccccccceeecc
Q psy3073 146 EQILYAVAITSLICLAITIFSFQTSVDFTGSVTVVF 181 (303)
Q Consensus 146 ~~vl~a~~it~~~~~~~~~~~~q~~~d~~~~~~~~~ 181 (303)
++|+.|+++|++++.++++++.|||+||+.|++..+
T Consensus 104 ~iV~~A~~~Ta~iF~~ls~~a~~tk~Dfs~lg~~L~ 139 (219)
T PRK10447 104 DVIALALGGTALVFFCCSAYVLTTRKDMSFLGGMLM 139 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 467899999999999999999999999999986665
No 12
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=96.25 E-value=0.29 Score=43.91 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhh
Q psy3073 64 MNLLAFVLLMAMACFQDLRRSYPLNYVFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVF 143 (303)
Q Consensus 64 ~~~l~~~~~~~l~~~~~~~r~~p~n~~~l~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (303)
.++..+.+...-...++.+.+.+.=...-...+...|......
T Consensus 50 ~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~~~------------------------------------- 92 (212)
T cd06181 50 FLGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILSVY------------------------------------- 92 (212)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 3333333333233344555566765555566677777777666
Q ss_pred hHHHHHHHHHHHHHHHhHHhhhccccccccccceeecc
Q psy3073 144 DAEQILYAVAITSLICLAITIFSFQTSVDFTGSVTVVF 181 (303)
Q Consensus 144 ~~~~vl~a~~it~~~~~~~~~~~~q~~~d~~~~~~~~~ 181 (303)
+.+.++.|.++|.++..++++++.|||.|++.+++..+
T Consensus 93 ~~~~i~~A~~~T~~if~~l~l~a~~tk~d~~~~g~~l~ 130 (212)
T cd06181 93 TAASVLQAFGITAAVFGGLSLYALTTKRDFSFLGGFLF 130 (212)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccHHhHHHHHH
Confidence 12347899999999999999999999999988765443
No 13
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=95.30 E-value=0.2 Score=44.22 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=49.0
Q ss_pred cchhHHHHHHHHHHHHHhHhhccccccccchhhhhhhhccccchhhhhccccCCccchhhhHHHHHHHHHHHHHHHhHHh
Q psy3073 84 SYPLNYVFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAIT 163 (303)
Q Consensus 84 ~~p~n~~~l~~ft~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~a~~it~~~~~~~~ 163 (303)
+.+.-...-...+...|...... |.+++++|.++|.+++++++
T Consensus 68 ~~~~~~~~t~~~g~~~~~i~~~~-------------------------------------~~~~v~~a~~~T~~if~~l~ 110 (205)
T PF01027_consen 68 ALILLFIFTLLEGLLLGPISSFY-------------------------------------DPSIVLQAFLLTAAIFIALT 110 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 36666666677777777777777 25678999999999999999
Q ss_pred hhccccccccccceeec
Q psy3073 164 IFSFQTSVDFTGSVTVV 180 (303)
Q Consensus 164 ~~~~q~~~d~~~~~~~~ 180 (303)
+++.|+|.|+++|+...
T Consensus 111 ~~a~~~~~d~~~~~~~l 127 (205)
T PF01027_consen 111 LYAFFTKRDFTRWGGIL 127 (205)
T ss_pred HHHHHHhhhhcccchHH
Confidence 99999999999886444
No 14
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=67.10 E-value=26 Score=32.52 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccccccceee
Q psy3073 146 EQILYAVAITSLICLAITIFSFQTSVDFTGSVTV 179 (303)
Q Consensus 146 ~~vl~a~~it~~~~~~~~~~~~q~~~d~~~~~~~ 179 (303)
.++..|.++|+.+..++.++...||+|+++.+..
T Consensus 115 ~~i~~af~~t~~~F~~ls~~g~~tk~Dls~l~~~ 148 (233)
T COG0670 115 DAIAAAFGITALVFGALSLYGYTTKRDLSSLGSF 148 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4578999999999999999999999999777533
No 15
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=37.44 E-value=2.7e+02 Score=26.06 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=5.6
Q ss_pred HHHHHhHHhhhcc
Q psy3073 155 TSLICLAITIFSF 167 (303)
Q Consensus 155 t~~~~~~~~~~~~ 167 (303)
+++.|+++..+..
T Consensus 4 ~~~~~~~~~s~~~ 16 (284)
T PF12805_consen 4 ATLLCFALASLLV 16 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.86 E-value=28 Score=29.05 Aligned_cols=7 Identities=29% Similarity=0.823 Sum_probs=2.7
Q ss_pred HHHHHHh
Q psy3073 71 LLMAMAC 77 (303)
Q Consensus 71 ~~~~l~~ 77 (303)
++++..|
T Consensus 15 ~~~~~~~ 21 (130)
T PF12273_consen 15 FLFLFYC 21 (130)
T ss_pred HHHHHHH
Confidence 3333334
No 17
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.87 E-value=2.9e+02 Score=23.22 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=15.5
Q ss_pred hccchhHHHHHHHHHHHHHhHhhcc
Q psy3073 82 RRSYPLNYVFLMLFTIVQGITLGSV 106 (303)
Q Consensus 82 ~r~~p~n~~~l~~ft~~~g~~~~~~ 106 (303)
|++++..-.++.+-++..|-.++.+
T Consensus 85 ~~~~~~~~~l~~l~~~l~ga~iali 109 (145)
T PF09925_consen 85 RRSPRLAEALLLLGAVLFGALIALI 109 (145)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666677766666654
No 18
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.93 E-value=7.8e+02 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy3073 64 MNLLAFVLLMAMACFQDLRRSYPLNYVFLM 93 (303)
Q Consensus 64 ~~~l~~~~~~~l~~~~~~~r~~p~n~~~l~ 93 (303)
.+.+.|+..+.... -+..|-||..|.+..
T Consensus 304 FI~LTF~~fflfE~-~~~~~iHpiQY~LVG 332 (430)
T PF06123_consen 304 FIGLTFLAFFLFEL-LSKLRIHPIQYLLVG 332 (430)
T ss_pred HHHHHHHHHHHHHH-HhcCcccHHHHHHHH
Confidence 34455555554432 244567888886554
No 19
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=22.53 E-value=88 Score=25.48 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhHHhhhcccccccc
Q psy3073 146 EQILYAVAITSLICLAITIFSFQTSVDF 173 (303)
Q Consensus 146 ~~vl~a~~it~~~~~~~~~~~~q~~~d~ 173 (303)
+--++++++..+.|+.+..++.-.++|+
T Consensus 22 ~~Wl~~i~~~~v~~~t~~~l~iYp~f~~ 49 (97)
T PF04834_consen 22 NYWLYAIGIVLVFCSTFFSLAIYPCFDF 49 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeec
Confidence 3456777777777777777777777776
No 20
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=20.43 E-value=1e+03 Score=25.01 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHcC
Q psy3073 184 EQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFP 236 (303)
Q Consensus 184 ~~I~~A~~~Ta~ifi~Lsl~a~~tk~Dft~lg~~L~~~l~~Liv~~lv~iF~~ 236 (303)
.++.-|+..++.+..+.++|-+.++||-...++-+-+++...++.++...+.+
T Consensus 186 H~~~aa~~tg~~~v~gvsA~~lLr~r~~~~~r~~l~i~l~~~li~~~~~~~~G 238 (514)
T PRK15035 186 HTVMAGYVTGAMFIMAISAWYLLRGRERDVALRSFAIGSVFGTLAIIGTLQLG 238 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36667777777778888888888888887888888888887777777776654
Done!