Query psy3073
Match_columns 303
No_of_seqs 127 out of 1294
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 01:01:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfi_A Major coat protein of P 8.5 2.1E+02 0.007 19.0 2.1 26 207-232 15-40 (46)
2 2f93_B Sensory rhodopsin II tr 6.5 8.9E+02 0.03 19.2 5.5 29 17-45 12-40 (122)
3 2q79_A Regulatory protein E2; 5.9 2.2E+02 0.0074 21.9 1.4 15 12-26 52-66 (93)
4 1f9f_A Regulatory protein E2; 5.7 2.2E+02 0.0075 21.3 1.3 15 12-26 54-68 (83)
5 1a7g_E E2 DBD, regulatory prot 5.4 2.4E+02 0.0083 21.0 1.4 15 12-26 53-67 (82)
6 1r8h_A Regulatory protein E2; 5.1 2.5E+02 0.0086 21.1 1.3 15 12-26 55-69 (87)
7 1rmk_A MU-O-conotoxin mrvib; b 5.0 1.7E+02 0.006 17.9 0.3 8 166-173 1-8 (31)
8 2bop_A Protein (E2); protein-D 4.8 2.7E+02 0.0091 20.9 1.3 15 12-26 54-68 (85)
9 1q90_R Cytochrome B6-F complex 3.5 1.1E+03 0.036 15.7 4.2 11 16-26 8-18 (49)
10 2iub_A CORA, divalent cation t 3.4 9.3E+02 0.032 21.8 4.1 66 17-82 296-361 (363)
No 1
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=8.50 E-value=2.1e+02 Score=19.00 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHH
Q psy3073 207 TSVDFTVWGGFLCIATLVMFLFSLVV 232 (303)
Q Consensus 207 tk~Dft~lg~~L~~~l~~Liv~~lv~ 232 (303)
.|.|..+.++.+...+..+.+++++.
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999998888888888754
No 2
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=6.48 E-value=8.9e+02 Score=19.25 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3073 17 SVRQAFVRKVYSILMVQLAITTAIISLFL 45 (303)
Q Consensus 17 ~~r~~f~rkvy~~l~~~l~~t~~~~~~~~ 45 (303)
.+|+.+=||.=.-+..-+.+|..+.+.+.
T Consensus 12 ~v~~~y~~~~~~~l~~~~~~~~~~~~~~~ 40 (122)
T 2f93_B 12 RVRHSYTGKMGAVFIFVGALTVLFGAIAY 40 (122)
T ss_dssp ----------------CHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888887777777778777666554
No 3
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=5.89 E-value=2.2e+02 Score=21.87 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=13.3
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|+++++|+.|+..|
T Consensus 52 ~F~s~~QR~~FL~tV 66 (93)
T 2q79_A 52 TYDSEWQRDQFLSQV 66 (93)
T ss_dssp ECSSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 799999999999865
No 4
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=5.74 E-value=2.2e+02 Score=21.27 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.2
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|+++++|+.|+..|
T Consensus 54 ~F~s~~QR~~FL~~V 68 (83)
T 1f9f_A 54 TYHSETQRTKFLNTV 68 (83)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999999865
No 5
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=5.39 E-value=2.4e+02 Score=20.96 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=13.3
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|+++++|+.|+..|
T Consensus 53 ~F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 53 TYISTSQRDDFLNTV 67 (82)
T ss_dssp ECSCHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 799999999999865
No 6
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=5.13 E-value=2.5e+02 Score=21.14 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=13.3
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 55 ~F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 55 TYHSEEQRQQFLNVV 69 (87)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 799999999999865
No 7
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=5.00 E-value=1.7e+02 Score=17.89 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=6.5
Q ss_pred cccccccc
Q psy3073 166 SFQTSVDF 173 (303)
Q Consensus 166 ~~q~~~d~ 173 (303)
+||-||||
T Consensus 1 ~C~rrW~~ 8 (31)
T 1rmk_A 1 ACSKKWEY 8 (31)
T ss_dssp CEECTTSC
T ss_pred Cccccccc
Confidence 57888888
No 8
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=4.84 E-value=2.7e+02 Score=20.86 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=13.2
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 54 ~F~s~~QR~~FL~tV 68 (85)
T 2bop_A 54 TFGSPSQRQDFLKHV 68 (85)
T ss_dssp EESSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999999865
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=3.52 E-value=1.1e+03 Score=15.72 Aligned_cols=11 Identities=0% Similarity=0.145 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q psy3073 16 SSVRQAFVRKV 26 (303)
Q Consensus 16 ~~~r~~f~rkv 26 (303)
+-.|++|+.++
T Consensus 8 dm~RRqfln~l 18 (49)
T 1q90_R 8 DMNKRNIMNLI 18 (49)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 34688888875
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=3.37 E-value=9.3e+02 Score=21.77 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3073 17 SVRQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFWFMNLLAFVLLMAMACFQDLR 82 (303)
Q Consensus 17 ~~r~~f~rkvy~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 82 (303)
+.|++=+.|+.+.++.-++.-+.+.++.--+-+..-......+++++..+..++.......+++.+
T Consensus 296 s~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~ 361 (363)
T 2iub_A 296 SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKK 361 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHcc
Done!