Query psy3073
Match_columns 303
No_of_seqs 127 out of 1294
Neff 5.7
Searched_HMMs 13730
Date Sat Aug 17 01:01:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3073.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3073hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 11.6 1.2E+02 0.0084 19.4 3.8 24 19-42 1-24 (64)
2 d2hjqa1 a.140.3.2 (A:50-103) H 9.4 99 0.0072 19.4 2.5 18 8-25 30-47 (54)
3 d1f9fa_ d.58.8.1 (A:) Papillom 5.7 1E+02 0.0076 21.2 1.3 15 12-26 52-66 (81)
4 d1a7ge_ d.58.8.1 (E:) Papillom 5.4 1.1E+02 0.0082 21.1 1.4 15 12-26 53-67 (82)
5 d2q79a1 d.58.8.1 (A:284-362) P 5.1 1.2E+02 0.009 20.7 1.4 15 12-26 51-65 (79)
6 d2bopa_ d.58.8.1 (A:) Papillom 4.6 1.4E+02 0.0099 20.8 1.3 15 12-26 54-68 (85)
7 d1r8ha_ d.58.8.1 (A:) Papillom 4.5 1.4E+02 0.01 20.8 1.3 15 12-26 55-69 (87)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.4 8E+02 0.058 19.4 10.9 43 237-279 51-95 (248)
9 d1vf5c3 f.23.23.1 (C:250-286) 2.9 5.4E+02 0.039 14.9 3.5 9 117-125 24-32 (37)
10 d1mkca_ g.5.1.2 (A:) Midkine, 2.2 2.2E+02 0.016 17.2 0.4 8 170-177 2-9 (43)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.61 E-value=1.2e+02 Score=19.36 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3073 19 RQAFVRKVYSILMVQLAITTAIIS 42 (303)
Q Consensus 19 r~~f~rkvy~~l~~~l~~t~~~~~ 42 (303)
|++-..|+...++.=.+.-+...+
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~g 24 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777777666665444333
No 2
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=9.39 E-value=99 Score=19.43 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCCCccccHHHHHHHHHH
Q psy3073 8 MGRSDFKESSVRQAFVRK 25 (303)
Q Consensus 8 ~~~~~~~~~~~r~~f~rk 25 (303)
.+.++|++.+.|-.|+.|
T Consensus 30 ~~ps~fkn~~eria~il~ 47 (54)
T d2hjqa1 30 RNPSDFKNADERIAYILK 47 (54)
T ss_dssp CCTTSCCSHHHHHHHHHH
T ss_pred CChhhhcChHHHHHHHHH
Confidence 457899999999998866
No 3
>d1f9fa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 18 [TaxId: 333761]}
Probab=5.66 E-value=1e+02 Score=21.22 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.0
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|++.|
T Consensus 52 ~F~s~~QR~~FL~~V 66 (81)
T d1f9fa_ 52 TYHSETQRTKFLNTV 66 (81)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999998764
No 4
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=5.42 E-value=1.1e+02 Score=21.06 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=13.1
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 53 ~F~s~~QR~~FL~~V 67 (82)
T d1a7ge_ 53 TYISTSQRDDFLNTV 67 (82)
T ss_dssp ECSCHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999999764
No 5
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=5.07 E-value=1.2e+02 Score=20.67 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=13.0
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 51 ~F~s~~QR~~FL~~V 65 (79)
T d2q79a1 51 TYDSEWQRDQFLSQV 65 (79)
T ss_dssp ECSSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999998764
No 6
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=4.56 E-value=1.4e+02 Score=20.76 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=13.0
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 54 ~F~s~~QR~~FL~~V 68 (85)
T d2bopa_ 54 TFGSPSQRQDFLKHV 68 (85)
T ss_dssp EESSHHHHHHHHHHS
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999998764
No 7
>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 6a [TaxId: 37122]}
Probab=4.48 E-value=1.4e+02 Score=20.80 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=13.0
Q ss_pred ccccHHHHHHHHHHH
Q psy3073 12 DFKESSVRQAFVRKV 26 (303)
Q Consensus 12 ~~~~~~~r~~f~rkv 26 (303)
.|.++++|+.|+..|
T Consensus 55 ~F~s~~QR~~FL~~V 69 (87)
T d1r8ha_ 55 TYHSEEQRQQFLNVV 69 (87)
T ss_dssp ECSSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHhcC
Confidence 789999999998764
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.36 E-value=8e+02 Score=19.42 Aligned_cols=43 Identities=23% Similarity=0.044 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccCCCchHHHH
Q psy3073 237 SKTLVFLMGCAGAVLFSLYLLYDTQLMMGGQH--KYALSPEEYIF 279 (303)
Q Consensus 237 ~~~l~~iis~lgvvlFs~yiiyDtQ~Ii~g~~--~~~~~~ddyI~ 279 (303)
-|+-++.=..+++++|..|-+.=|=.+---+. .+..++|+.|.
T Consensus 51 ~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk~~Ai~ 95 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQE 95 (248)
T ss_dssp TTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCHHHHHH
T ss_pred cceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccHHHHHH
Confidence 34556666777777777776666655533221 23456666654
No 9
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.90 E-value=5.4e+02 Score=14.88 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=5.1
Q ss_pred hhhhhcccc
Q psy3073 117 ILKKDKFRG 125 (303)
Q Consensus 117 ~~~~~~~~~ 125 (303)
.+||..+|.
T Consensus 24 VlKKKQ~Ek 32 (37)
T d1vf5c3 24 ILKKKQVEK 32 (37)
T ss_dssp HHHTGGGCT
T ss_pred HHHHHHHHH
Confidence 456666653
No 10
>d1mkca_ g.5.1.2 (A:) Midkine, a heparin-binding growth factor, C-terminal domain {Synthetic}
Probab=2.24 E-value=2.2e+02 Score=17.23 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccccccce
Q psy3073 170 SVDFTGSV 177 (303)
Q Consensus 170 ~~d~~~~~ 177 (303)
||+|.+|+
T Consensus 2 KYkF~~WG 9 (43)
T d1mkca_ 2 KYKFENWG 9 (43)
T ss_dssp CCEECCCC
T ss_pred cccccccc
Done!