RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3073
(303 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 5e-04
Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 61/278 (21%)
Query: 54 VVSNMGF--FW--FMNLLAFVLLMAMACFQDLRRSYPLNYVFLMLFTIVQGITLGSVTVV 109
V M F FW N + ++ M Q L N+ + + + S+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-- 231
Query: 110 FPFKADFILKKDKFRGVMGIIMNISTNSSVTVVFDAE-QILYAVAITSLICLAITIFSFQ 168
+ K ++ +++N+ N+ F+ +IL T + + +
Sbjct: 232 -AELRRLLKSKPYENCLL-VLLNVQ-NAKAWNAFNLSCKIL---LTTRFKQVTDFLSAAT 285
Query: 169 TSVDFTGSVTVVFDAEQILYAVA------ITSL---IC----LAITIFSFQTSVDFTVWG 215
T+ ++ +++ + L + ++I + W
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 216 GF-------------LCIATL----VMFLFSLVVIF-----FPSKTLVFLMGCAGAVLFS 253
+ + L +F + +F P+ L +++
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--------LIWF 397
Query: 254 LYLLYDTQLMMGGQHKYAL---SPEEYIFAALNLYVDI 288
+ D +++ HKY+L P+E + ++Y+++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.009
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 75/211 (35%)
Query: 8 MGRSDFKESSV-RQAF------VRKVY--SILMVQLAITTAIISLF-------------- 44
MG +K S + + + Y SIL + + + F
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 45 -LFNPDLKMFVVSNMGF---------FWF------MNLLAF----VLLMAMACFQDLRR- 83
+F + + + F + F ++ F + LM A F+DL+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 84 -SYPLNYVFLMLFTIVQGITLG------SVTVVFPFKA------------DFILKKDKF- 123
P + F G +LG S+ V ++ + +D+
Sbjct: 1751 GLIPADATFA-------GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 124 RGVMGII-MNISTNSSVTVVFDAEQILYAVA 153
R G+I +N V F E + Y V
Sbjct: 1804 RSNYGMIAINP---GRVAASFSQEALQYVVE 1831
Score = 34.3 bits (78), Expect = 0.055
Identities = 45/236 (19%), Positives = 64/236 (27%), Gaps = 87/236 (36%)
Query: 17 SVR-------QAFVRKVYSILMVQLAITTAIISLFLFN-PDLKMFVVSNMGFFWFMNLLA 68
S+ Q +V K S L + ISL N VVS G +L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLV--NGAK--NLVVS--GPP--QSLYG 388
Query: 69 FVL-LMAMACFQDL--------RRSYPLNYVFLMLFTIVQGITLGSVTVVFPF------K 113
L L L R + FL V PF
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL------------PVAS--PFHSHLLVP 434
Query: 114 ADFILKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVD- 172
A ++ KD + V F+A+ + I ++ D
Sbjct: 435 ASDLINKDLVKN--------------NVSFNAKD------------IQIPVYDTFDGSDL 468
Query: 173 --FTGSVTVVFDAEQILYAVAITSLICL--AITIFSFQTSVDFTVWGGFLCIATLV 224
+GS++ E+I I L T F +DF GG + L
Sbjct: 469 RVLSGSIS-----ERI--VDCIIRLPVKWETTTQFKATHILDFGP-GGASGLGVLT 516
Score = 29.6 bits (66), Expect = 1.7
Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 58/186 (31%)
Query: 77 CFQDLR---RSYPLNYVFLMLFTIVQGITLGSVTVVFPFKADFILKKDKFRGVMGI-IMN 132
F++LR ++Y V + TL + + A+ + + G+ I+
Sbjct: 169 YFEELRDLYQTYH---VLVGDLIKFSAETLSEL-IRTTLDAEKVFTQ-------GLNILE 217
Query: 133 ISTNSSVTVVFDAEQILYA------VAITSLICLAITI----FSFQTSVDFTGSVTVVFD 182
N S T D + +L + + L +T F+ + T
Sbjct: 218 WLENPSNTP--DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-- 273
Query: 183 AEQILYAVAITSLICLAITIFSFQTSVDFTVWGGFLCIATLVMFLFSLVVIFFPSKTLVF 242
++ ++ AVAI + W F + T++F
Sbjct: 274 SQGLVTAVAIAE----TDS------------WESFFVSVRKAI-------------TVLF 304
Query: 243 LMGCAG 248
+G
Sbjct: 305 FIGVRC 310
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 27.8 bits (62), Expect = 2.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 21 AFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFF 61
AF+ K+++ +V T A+I ++P F V + G F
Sbjct: 19 AFLTKLWT--LVSDPDTDALIC---WSPSGNSFHVFDQGQF 54
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2,
protein structure initiative, tuberculosis structural
genomics consortium; 2.50A {Mycobacterium smegmatis}
Length = 228
Score = 28.5 bits (64), Expect = 2.3
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 118 LKKDKFRGVMGIIMNISTNSSVTVVFDAEQILYAVAITSLICLAITIFSFQTSVDFTG-- 175
L++ + GV+ I+ +V V + L L + +
Sbjct: 49 LREAELLGVVDIV---PAARTVLVKLAGPRYQAP-TRQRLGKLRVRPEAITHQPPGDRVD 104
Query: 176 -SVTVVFDAEQILYAVAITSL 195
++ VV+D + ++T +
Sbjct: 105 VTIDVVYDGADLHEVASLTGM 125
>1hks_A Heat-shock transcription factor; transcription regulation; NMR
{Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Length = 106
Score = 27.3 bits (61), Expect = 3.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 21 AFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFF 61
AF+ K++ +V A T +I + D + FV+ N F
Sbjct: 6 AFLAKLWR--LVDDADTNRLIC---WTKDGQSFVIQNQAQF 41
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 27.9 bits (63), Expect = 4.0
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 20/102 (19%)
Query: 99 QGITLGSVTVVFPFKADFILKKDKFRGVMGIIMNISTNSSVT-VVFDAEQILY-AVAITS 156
+G V V F K + + I ++ N S + V + + + I
Sbjct: 199 EGKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYWSV--NRSKSDVSYGDIERFWGKEFIRE 256
Query: 157 LIC---LAITIFSF------QTSV------DFTGSVTVVFDA 183
+ I SF Q + + D
Sbjct: 257 RLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG-EKILDM 297
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 26.6 bits (59), Expect = 4.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 21 AFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFF 61
AFV K++S MV I ++ + VV N F
Sbjct: 14 AFVNKLWS--MVNDKSNEKFIH---WSTSGESIVVPNRERF 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.143 0.416
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,447,582
Number of extensions: 263941
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 34
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (25.7 bits)