RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3073
         (303 letters)



>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 137

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 253 SLYLLYDTQLMMGGQHKYALSPEEYIFAAL 282
            L L       MGG      +PE+   A  
Sbjct: 23  RLNLDLSVPAEMGGDGGPGTNPEQLFAAGY 52


>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
          (Kluyveromyces lactis) [TaxId: 28985]}
          Length = 92

 Score = 26.4 bits (58), Expect = 1.9
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 19 RQAFVRKVYSILMVQLAITTAIISLFLFNPDLKMFVVSNMGFFW 62
          R AFV K++S  MV        I    ++   +  VV N   F 
Sbjct: 2  RPAFVNKLWS--MVNDKSNEKFIH---WSTSGESIVVPNRERFV 40


>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
           domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 168

 Score = 25.5 bits (55), Expect = 5.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 100 GITLGSVTVVFPFKADFILKKDKFRGVMGIIM 131
           GI +GS T V    ++ +L  D F  ++  + 
Sbjct: 135 GIAMGSGTAVAKTASEMVLADDNFSTIVAAVE 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.143    0.416 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,048,460
Number of extensions: 45612
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 16
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.4 bits)