BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3080
         (118 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1
            SV=5
          Length = 2243

 Score =  175 bits (443), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 1/119 (0%)

Query: 1    MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAK 60
            MRRL+I KIAAH+ADFTPRL+ N RA+YQ+C IP + YPQLE E+F NI+YL+ LCDT +
Sbjct: 1207 MRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPIINYPQLENELFCNIYYLKQLCDTLR 1266

Query: 61   FPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSH-HEENIVRKAYY 118
            FPDWPI  P+ LLKD L+AWK EVE+KPP MS+DDAYE L L +G   H+E+ +RKAY+
Sbjct: 1267 FPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKIRKAYF 1325


>sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1
            SV=1
          Length = 2554

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 69/112 (61%)

Query: 5    LIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDW 64
            LI ++  H+ D+  +L  +  ++Y +  +P V YP+L  EM+ + +YLR+LCD  +FP+W
Sbjct: 1409 LICQVLQHLGDYPQKLSQHCHSLYDYAPMPPVTYPELRDEMWCHRYYLRNLCDEIQFPNW 1468

Query: 65   PINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKA 116
            PI + +  L+ +L  W+ E+ RKP ++S  +A + L ++  +   +++ R A
Sbjct: 1469 PIVEHVEFLQSLLVMWREELTRKPMDLSEGEACKILEISLNNVSSDDLNRTA 1520


>sp|Q05755|GLTB_AZOBR Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense
           GN=gltB PE=1 SV=1
          Length = 1515

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 38  YPQLEQEMFVNIFYLRHL-CDTAKFPDWPINQPIMLL 73
           YP L  E F + F + H    T  FP WP+ QP  +L
Sbjct: 228 YPDLLDERFESDFAIYHQRYSTNTFPTWPLAQPFRML 264


>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1
          Length = 503

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 73  LKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVR 114
           L++VL+ W+AE E  PP  S D + +  G ++  + E++ V+
Sbjct: 379 LEEVLQEWEAEQEPSPPPASTDMSNKTSGSSQTPNEEDDEVQ 420


>sp|A3D0Y7|KATG_SHEB5 Catalase-peroxidase OS=Shewanella baltica (strain OS155 / ATCC
           BAA-1091) GN=katG PE=3 SV=1
          Length = 721

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 63  DWPINQPIMLLK--DVLEAWKAEVERKPPEMSVDD 95
           DWP+NQP  L K   VLE+ ++E  +   ++S+ D
Sbjct: 488 DWPVNQPEQLAKVLKVLESIQSEFNKSGKKISLAD 522


>sp|A9L1H8|KATG_SHEB9 Catalase-peroxidase OS=Shewanella baltica (strain OS195) GN=katG
           PE=3 SV=1
          Length = 721

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 63  DWPINQPIMLLK--DVLEAWKAEVERKPPEMSVDD 95
           DWP+NQP  L K   VLE+ ++E  +   ++S+ D
Sbjct: 488 DWPVNQPEQLAKVLKVLESIQSEFNKSGKKISLAD 522


>sp|A6WS27|KATG_SHEB8 Catalase-peroxidase OS=Shewanella baltica (strain OS185) GN=katG
           PE=3 SV=1
          Length = 723

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 63  DWPINQPIMLLK--DVLEAWKAEVERKPPEMSVDD 95
           DWP+NQP  L K   VLE+ ++E  +   ++S+ D
Sbjct: 488 DWPVNQPEQLAKVLKVLESIQSEFNKSGKKISLAD 522


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,402,598
Number of Sequences: 539616
Number of extensions: 1748649
Number of successful extensions: 4262
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4257
Number of HSP's gapped (non-prelim): 9
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)