Query psy3080
Match_columns 118
No_of_seqs 99 out of 113
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 01:11:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 97.9 6.1E-06 2.1E-10 53.2 3.5 28 88-117 8-36 (71)
2 2guz_B Mitochondrial import in 97.9 3.9E-06 1.3E-10 54.4 2.5 25 91-117 1-28 (65)
3 1iur_A KIAA0730 protein; DNAJ 97.6 2.6E-05 8.8E-10 52.6 2.0 28 88-117 10-37 (88)
4 2ctp_A DNAJ homolog subfamily 97.4 6.6E-05 2.3E-09 48.4 1.9 28 88-117 1-28 (78)
5 2dn9_A DNAJ homolog subfamily 97.3 8E-05 2.7E-09 48.0 1.9 28 88-117 1-28 (79)
6 1wjz_A 1700030A21RIK protein; 97.1 0.00021 7.2E-09 47.3 1.9 27 89-117 11-37 (94)
7 1faf_A Large T antigen; J doma 97.0 0.00035 1.2E-08 45.8 2.7 24 92-117 9-34 (79)
8 2ej7_A HCG3 gene; HCG3 protein 97.0 0.00026 9E-09 45.8 1.9 26 90-117 5-30 (82)
9 2yua_A Williams-beuren syndrom 96.9 0.00042 1.4E-08 46.8 2.6 28 88-117 11-38 (99)
10 2ys8_A RAB-related GTP-binding 96.7 0.00066 2.3E-08 45.2 2.0 23 93-117 26-48 (90)
11 2och_A Hypothetical protein DN 96.6 0.00074 2.5E-08 42.9 1.9 23 93-117 7-29 (73)
12 2dmx_A DNAJ homolog subfamily 96.6 0.00076 2.6E-08 44.7 1.5 25 91-117 6-30 (92)
13 2ctw_A DNAJ homolog subfamily 96.5 0.00082 2.8E-08 46.2 1.6 27 89-117 12-38 (109)
14 2cug_A Mkiaa0962 protein; DNAJ 96.4 0.0012 4.2E-08 43.5 1.9 23 93-117 16-38 (88)
15 3lz8_A Putative chaperone DNAJ 96.2 0.00073 2.5E-08 54.9 0.0 31 86-118 20-50 (329)
16 2ctq_A DNAJ homolog subfamily 96.2 0.0019 6.7E-08 44.4 1.8 25 91-117 17-41 (112)
17 2qwo_B Putative tyrosine-prote 95.7 0.0022 7.6E-08 43.7 0.5 22 94-117 33-54 (92)
18 2qsa_A DNAJ homolog DNJ-2; J-d 94.4 0.012 4.1E-07 39.9 1.2 24 93-117 14-37 (109)
19 1n4c_A Auxilin; four helix bun 91.8 0.013 4.3E-07 44.5 -2.1 22 94-117 117-138 (182)
20 3bvo_A CO-chaperone protein HS 91.0 0.1 3.6E-06 39.7 2.2 24 94-117 43-66 (207)
21 3apo_A DNAJ homolog subfamily 90.6 0.084 2.9E-06 45.3 1.5 25 92-118 19-43 (780)
22 3ag7_A Putative uncharacterize 90.5 0.05 1.7E-06 37.4 0.0 45 70-117 8-61 (106)
23 3ls8_A Phosphatidylinositol 3- 73.8 2.1 7.1E-05 37.7 3.1 73 30-115 37-113 (614)
24 2elj_A Transcriptional adapter 73.4 5 0.00017 26.6 4.3 46 53-105 28-73 (88)
25 2ctr_A DNAJ homolog subfamily 72.4 1.2 4.1E-05 28.7 1.0 19 89-107 2-20 (88)
26 2x6h_A GH13170P, VPS34, phosph 64.6 4.7 0.00016 35.9 3.4 70 30-115 51-127 (696)
27 1fad_A Protein (FADD protein); 61.8 6.8 0.00023 25.5 3.1 51 52-103 28-87 (99)
28 2aqe_A Transcriptional adaptor 54.2 14 0.00048 24.5 3.6 46 53-106 28-73 (90)
29 2cuj_A Transcriptional adaptor 51.8 25 0.00086 24.2 4.7 45 53-105 46-90 (108)
30 3mkl_A HTH-type transcriptiona 50.4 19 0.00063 23.6 3.8 61 35-105 23-86 (120)
31 2o37_A Protein SIS1; HSP40, J- 47.5 6.3 0.00022 25.5 1.0 16 92-107 6-21 (92)
32 2yqf_A Ankyrin-1; death domain 47.1 22 0.00075 23.7 3.8 37 67-103 55-91 (111)
33 3oou_A LIN2118 protein; protei 46.3 14 0.00046 23.7 2.5 62 35-106 21-86 (108)
34 2of5_A Death domain-containing 46.2 17 0.00058 24.9 3.1 39 67-105 61-99 (114)
35 3gbg_A TCP pilus virulence reg 42.9 20 0.00069 26.2 3.3 72 35-116 185-269 (276)
36 3oio_A Transcriptional regulat 42.5 26 0.0009 22.5 3.5 61 35-105 23-87 (113)
37 2o35_A Hypothetical protein DU 42.4 28 0.00096 24.3 3.7 31 73-103 44-76 (105)
38 2jt1_A PEFI protein; solution 42.3 17 0.00059 23.2 2.5 32 73-104 6-38 (77)
39 2ou3_A Tellurite resistance pr 41.1 17 0.00056 25.6 2.5 30 50-86 117-146 (161)
40 2o71_A Death domain-containing 40.4 22 0.00075 24.4 3.0 39 67-105 61-99 (115)
41 2k9s_A Arabinose operon regula 39.5 23 0.00079 22.5 2.8 74 35-116 20-105 (107)
42 1hdj_A Human HSP40, HDJ-1; mol 38.9 7.4 0.00025 24.1 0.3 13 95-107 4-16 (77)
43 3fyb_A Protein of unknown func 38.7 27 0.00091 24.4 3.1 31 73-103 43-75 (104)
44 1rmk_A MU-O-conotoxin mrvib; b 38.3 10 0.00034 21.1 0.7 16 24-39 2-17 (31)
45 2gf4_A Protein VNG1086C; HSR14 35.6 67 0.0023 22.1 4.8 47 70-116 6-54 (100)
46 3lsg_A Two-component response 35.2 38 0.0013 21.3 3.3 62 34-105 18-83 (103)
47 3hhm_A Phosphatidylinositol-4, 33.8 30 0.001 32.4 3.6 63 41-115 570-636 (1091)
48 3mxm_B Three prime repair exon 33.4 55 0.0019 24.3 4.5 56 51-106 133-193 (242)
49 1ais_B TFB TFIIB, protein (tra 33.0 2.8 9.6E-05 30.2 -2.8 25 93-117 155-186 (200)
50 4bbr_M Transcription initiatio 32.9 9.2 0.00031 30.7 0.0 67 50-117 237-313 (345)
51 3ezq_B Protein FADD; apoptosis 28.3 1.2E+02 0.0041 20.8 5.2 47 53-103 21-79 (122)
52 2y3a_A Phosphatidylinositol-4, 27.7 41 0.0014 31.5 3.4 54 39-103 574-635 (1092)
53 3cuq_A Vacuolar-sorting protei 27.7 30 0.001 26.9 2.1 30 87-116 91-123 (234)
54 2wxf_A Phosphatidylinositol-4, 27.7 58 0.002 29.9 4.3 61 43-115 425-490 (940)
55 3tk2_A Phenylalanine-4-hydroxy 27.7 57 0.0019 26.4 3.8 65 31-100 34-116 (302)
56 3op6_A Uncharacterized protein 26.8 18 0.00061 25.1 0.7 38 69-106 3-42 (152)
57 2pjp_A Selenocysteine-specific 26.0 45 0.0015 22.2 2.6 33 71-104 62-94 (121)
58 1c9b_A General transcription f 25.9 1.8E+02 0.006 20.6 6.1 23 95-117 151-180 (207)
59 2gle_A Neurabin-1; SAM domain, 25.7 55 0.0019 19.8 2.8 43 61-104 4-53 (74)
60 3g2s_A C-terminal fragment of 25.6 47 0.0016 23.6 2.7 46 52-100 96-141 (149)
61 2y4t_A DNAJ homolog subfamily 25.6 23 0.00078 26.4 1.1 21 95-117 383-403 (450)
62 2gf5_A FADD protein; death dom 25.4 48 0.0016 24.1 2.8 55 48-103 97-171 (191)
63 3enp_A TP53RK-binding protein; 25.2 1.4E+02 0.0049 21.7 5.4 41 66-106 50-104 (177)
64 3b09_A Peptidyl-prolyl CIS-tra 24.8 95 0.0032 20.2 3.9 28 73-100 54-81 (88)
65 1j9i_A GPNU1 DBD;, terminase s 23.9 24 0.00083 21.1 0.8 15 91-105 3-17 (68)
66 1k1f_A Breakpoint cluster regi 22.7 67 0.0023 20.9 2.7 22 67-92 2-24 (72)
67 1jfi_B DR1 protein, transcript 21.4 67 0.0023 24.0 3.0 38 56-98 78-123 (179)
68 2o8x_A Probable RNA polymerase 21.4 25 0.00085 20.2 0.5 19 88-106 29-47 (70)
69 3v46_A Cell division control p 20.6 36 0.0012 25.2 1.3 20 58-77 97-116 (170)
70 3k7a_M Transcription initiatio 20.6 21 0.00072 28.3 0.0 67 50-117 237-313 (345)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.95 E-value=6.1e-06 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHcCCCC-CCCCChHHHHhhc
Q psy3080 88 PPEMSVDDAYEALGLTR-GSHHEENIVRKAY 117 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~-~a~~se~~IRrAY 117 (118)
...||.++||++|||++ ++ +.++||+||
T Consensus 8 ~~~m~~~~~y~iLgl~~~~a--~~~eIk~ay 36 (71)
T 2guz_A 8 DPKMNSKEALQILNLTENTL--TKKKLKEVH 36 (71)
T ss_dssp CSSCCHHHHHHHTTCCTTTC--CHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCCC--CHHHHHHHH
Confidence 35799999999999999 68 999999998
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.9e-06 Score=54.40 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCHHHHHHHcCCCCC---CCCChHHHHhhc
Q psy3080 91 MSVDDAYEALGLTRG---SHHEENIVRKAY 117 (118)
Q Consensus 91 mS~edAy~vLGL~~~---a~~se~~IRrAY 117 (118)
||.+|||+||||+++ + +.++|++||
T Consensus 1 mt~~EA~~ILgv~~~~~~a--~~~~Ik~~y 28 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDL--NMDKINNRF 28 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCC--SHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcC--CHHHHHHHH
Confidence 899999999999998 7 999999998
No 3
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=97.57 E-value=2.6e-05 Score=52.65 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 88 PPEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
|..++..++|+||||++++ +.++||+||
T Consensus 10 ~~~~~~~~~y~vLgv~~~a--s~~eIKkaY 37 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKL--PESERKKII 37 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSS--CSHHHHHHH
T ss_pred CCCccHHHHHHHhCCCCCC--CHHHHHHHH
Confidence 6688999999999999999 999999999
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=6.6e-05 Score=48.37 Aligned_cols=28 Identities=39% Similarity=0.644 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 88 PPEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
++.++..+.|++|||++++ +.++||+||
T Consensus 1 gs~~~~~~~y~iLgv~~~a--s~~eIk~ay 28 (78)
T 2ctp_A 1 GSSGSSGDYYEILGVSRGA--SDEDLKKAY 28 (78)
T ss_dssp CCCSCSCCHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCCCCCCHHHHcCCCCCC--CHHHHHHHH
Confidence 4567888999999999999 999999998
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=8e-05 Score=47.99 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 88 PPEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
+++++..+.|++|||++++ +.++||+||
T Consensus 1 gs~~~~~~~y~iLgv~~~a--~~~~Ik~ay 28 (79)
T 2dn9_A 1 GSSGSSGDYYQILGVPRNA--SQKEIKKAY 28 (79)
T ss_dssp CCSSCCSCHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCCCCCCHHHHcCCCCCC--CHHHHHHHH
Confidence 4567788999999999999 999999998
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=97.05 E-value=0.00021 Score=47.26 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 89 PEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 89 ~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..|+..+.|+||||++++ +.++||+||
T Consensus 11 ~~~~~~~~y~iLgv~~~a--s~~eIk~aY 37 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSA--NMSDLKQKY 37 (94)
T ss_dssp SSSSCSCHHHHTTCCTTC--CHHHHHHHH
T ss_pred ccCCCCChHHHcCCCCCC--CHHHHHHHH
Confidence 346678999999999999 999999999
No 7
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=97.02 E-value=0.00035 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.2
Q ss_pred CHHHHHHHcCCCCC--CCCChHHHHhhc
Q psy3080 92 SVDDAYEALGLTRG--SHHEENIVRKAY 117 (118)
Q Consensus 92 S~edAy~vLGL~~~--a~~se~~IRrAY 117 (118)
+.++||++|||+++ + +.++||+||
T Consensus 9 ~~~~~y~iLgl~~~~~a--~~~eIk~aY 34 (79)
T 1faf_A 9 DKERLLELLKLPRQLWG--DFGRMQQAY 34 (79)
T ss_dssp HHHHHHHHHTCCSSSTT--CHHHHHHHH
T ss_pred hHHHHHHHcCCCCCCCC--CHHHHHHHH
Confidence 46889999999999 8 999999998
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00026 Score=45.80 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.3
Q ss_pred CCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 90 EMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 90 ~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..+..+.|+||||++++ +.++||+||
T Consensus 5 ~~~~~~~y~iLgv~~~a--s~~eIk~ay 30 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQA--SSEAIKKAY 30 (82)
T ss_dssp CSSSCCHHHHTTCCTTC--CHHHHHHHH
T ss_pred CCCCcCHHHHcCCCCCC--CHHHHHHHH
Confidence 44567999999999999 999999998
No 9
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00042 Score=46.77 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 88 PPEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
.+.|+..+.|+||||++++ +.++||+||
T Consensus 11 ~~~~~~~~~Y~vLgv~~~a--s~~eIk~ay 38 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTA--TQAQIKAAY 38 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCCCccCHHHHcCCCCCC--CHHHHHHHH
Confidence 3467899999999999999 999999999
No 10
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00066 Score=45.21 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 93 VDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 93 ~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..+.|+||||++++ +.++||+||
T Consensus 26 ~~~~y~iLgv~~~a--s~~eIk~aY 48 (90)
T 2ys8_A 26 SKDSWDMLGVKPGA--SRDEVNKAY 48 (90)
T ss_dssp CSSHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCHHHHcCcCCCC--CHHHHHHHH
Confidence 37899999999999 999999999
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=96.64 E-value=0.00074 Score=42.90 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 93 VDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 93 ~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..+.|++|||++++ +.++||+||
T Consensus 7 ~~~~y~iLgl~~~a--~~~eIk~ay 29 (73)
T 2och_A 7 ETGYYDVLGVKPDA--SDNELKKAY 29 (73)
T ss_dssp CCCHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHH
Confidence 45899999999999 999999998
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.00076 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.5
Q ss_pred CCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 91 mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
.+..+.|+||||++++ +.++||+||
T Consensus 6 ~~~~~~y~iLgv~~~a--s~~eIk~ay 30 (92)
T 2dmx_A 6 SGMANYYEVLGVQASA--SPEDIKKAY 30 (92)
T ss_dssp CCCCCHHHHHTCCTTC--CTTHHHHHH
T ss_pred CCCcCHHHHcCCCCCC--CHHHHHHHH
Confidence 3467899999999999 999999998
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.52 E-value=0.00082 Score=46.18 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 89 PEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 89 ~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..++..++|++|||++++ +.++||+||
T Consensus 12 ~~~~~~~~Y~vLgv~~~a--s~~eIk~aY 38 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNA--TSDDIKKSY 38 (109)
T ss_dssp TTSCSCCHHHHHTCCTTC--CHHHHHHHH
T ss_pred cCCCCCCHHHHcCcCCCC--CHHHHHHHH
Confidence 345678999999999999 999999998
No 14
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=96.42 E-value=0.0012 Score=43.45 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 93 VDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 93 ~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..++|++|||++++ +.++||+||
T Consensus 16 ~~d~y~iLgv~~~a--s~~eIk~ay 38 (88)
T 2cug_A 16 DFDPYRVLGVSRTA--SQADIKKAY 38 (88)
T ss_dssp SSCHHHHHTCCTTC--CHHHHHHHH
T ss_pred CCCHHHHcCcCCCC--CHHHHHHHH
Confidence 56899999999999 999999998
No 15
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=96.24 E-value=0.00073 Score=54.85 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHcCCCCCCCCChHHHHhhcC
Q psy3080 86 RKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY 118 (118)
Q Consensus 86 kkp~~mS~edAy~vLGL~~~a~~se~~IRrAY~ 118 (118)
..++.|+..+.|++|||++++ +.++|||||.
T Consensus 20 ~~~~~m~~~d~Y~vLgv~~~a--s~~eIk~aYr 50 (329)
T 3lz8_A 20 FQSNAMELKDYYAILGVQPTD--DLKTIKTAYR 50 (329)
T ss_dssp ---------------------------------
T ss_pred cccccccccCHHHHcCcCCCC--CHHHHHHHHH
Confidence 357789999999999999999 9999999994
No 16
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0019 Score=44.40 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 91 mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
++..+.|++|||++++ +.++||+||
T Consensus 17 ~~~~d~Y~iLgv~~~a--s~~eIk~ay 41 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELS--SVEQILAEF 41 (112)
T ss_dssp CCCCCHHHHTTCCTTS--CHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCC--CHHHHHHHH
Confidence 4568999999999999 999999998
No 17
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=95.71 E-value=0.0022 Score=43.74 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.4
Q ss_pred HHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 94 DDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 94 edAy~vLGL~~~a~~se~~IRrAY 117 (118)
++-|++|||++++ ++++|||||
T Consensus 33 ~~~y~~Lgv~~~a--s~~eIKkAY 54 (92)
T 2qwo_B 33 ETKWKPVGMADLV--TPEQVKKVY 54 (92)
T ss_dssp CCSCCCCCGGGSS--SHHHHHHHH
T ss_pred ccCCeecCCCCCC--CHHHHHHHH
Confidence 4679999999999 999999999
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=94.40 E-value=0.012 Score=39.93 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=21.2
Q ss_pred HHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 93 VDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 93 ~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
..+.|++|||++++ ++.++||+||
T Consensus 14 ~~~~y~iLgv~~~a-~s~~eIk~aY 37 (109)
T 2qsa_A 14 LENCYDVLEVNREE-FDKQKLAKAY 37 (109)
T ss_dssp TSCHHHHTTCCGGG-CCHHHHHHHH
T ss_pred CCCHHHHcCCCCCC-CCHHHHHHHH
Confidence 57899999999885 5889999998
No 19
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=91.81 E-value=0.013 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 94 DDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 94 edAy~vLGL~~~a~~se~~IRrAY 117 (118)
++.|++|||++++ +.++||+||
T Consensus 117 ~d~Y~vLgv~~~A--s~~eIKkAY 138 (182)
T 1n4c_A 117 ETKWKPVGMADLV--TPEQVKKVY 138 (182)
T ss_dssp CCCCCCCCGGGGS--SHHHHHHHH
T ss_pred cchhhcCCCCCCC--CHHHHHHHH
Confidence 6899999999999 999999999
No 20
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=91.02 E-value=0.1 Score=39.66 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 94 DDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 94 edAy~vLGL~~~a~~se~~IRrAY 117 (118)
.+.|++|||+++...|.++||+||
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aY 66 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRY 66 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHH
Confidence 478999999997544999999999
No 21
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=90.58 E-value=0.084 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.1
Q ss_pred CHHHHHHHcCCCCCCCCChHHHHhhcC
Q psy3080 92 SVDDAYEALGLTRGSHHEENIVRKAYY 118 (118)
Q Consensus 92 S~edAy~vLGL~~~a~~se~~IRrAY~ 118 (118)
+..+.|++|||++++ +.++||+||.
T Consensus 19 ~~~~~y~~lg~~~~a--~~~~i~~ay~ 43 (780)
T 3apo_A 19 HDQNFYSLLGVSKTA--SSREIRQAFK 43 (780)
T ss_dssp ----CHHHHTCCTTC--CHHHHHHHHC
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHH
Confidence 467899999999999 9999999994
No 22
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=90.51 E-value=0.05 Score=37.45 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhcC---------CCCCCHHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080 70 IMLLKDVLEAWKAEVERK---------PPEMSVDDAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 70 v~lL~~lL~~Wr~E~~kk---------p~~mS~edAy~vLGL~~~a~~se~~IRrAY 117 (118)
+..++.-+.+|..+-+.. ...-...+=|++||++. + ++++|||||
T Consensus 8 ~~~~~~~i~~W~~~~~~~ir~lL~~l~~~l~~~~d~Y~vl~~~~-A--s~~eIKkAY 61 (106)
T 3ag7_A 8 IKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDM-I--EGNAVRKSY 61 (106)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTSCCCCCCGGGS-C--SHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccCCHHHHcCCCC-C--CHHHHHHHH
Confidence 455666677776532211 00001246789999995 8 999999999
No 23
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=73.84 E-value=2.1 Score=37.71 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=51.6
Q ss_pred ccccCccCccccccchhhhHHHHHHH----hccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCC
Q psy3080 30 FCGIPAVRYPQLEQEMFVNIFYLRHL----CDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 30 y~pip~i~YpeL~~elfC~~yYLr~l----cd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~ 105 (118)
|-|.-.++ +|-.+-||-..|||.+. -.-++.-+|.-.+-|...-++|..| +.++.+||.+.||-.-
T Consensus 37 ~~p~~~Lt-~~ek~llWk~R~~l~~~~~aL~kfL~sV~W~~~~e~~~a~~LL~~W--------~~i~~~dALELL~~~f- 106 (614)
T 3ls8_A 37 YPPTKQLT-YEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQEAKQALELLGKW--------KPMDVEDSLELLSSHY- 106 (614)
T ss_dssp SCTTCCCC-HHHHHHHHHTHHHHTTCGGGHHHHHTTCCTTSHHHHHHHHHHHHHS--------CCCCHHHHGGGGSTTC-
T ss_pred CCCCCCCC-HHHHHHHHHHHHHHhhChhHHHHHhccCCCCCHHHHHHHHHHHhhC--------CCCCHHHHHHhCcccC-
Confidence 44443333 33445799999999753 3334566998777788888999999 3589999999997543
Q ss_pred CCCChHHHHh
Q psy3080 106 SHHEENIVRK 115 (118)
Q Consensus 106 a~~se~~IRr 115 (118)
.+..||+
T Consensus 107 ---~d~~VR~ 113 (614)
T 3ls8_A 107 ---TNPTVRR 113 (614)
T ss_dssp ---CCHHHHH
T ss_pred ---CCHHHHH
Confidence 4567764
No 24
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=73.37 E-value=5 Score=26.58 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=33.9
Q ss_pred HHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCC
Q psy3080 53 RHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 53 r~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~ 105 (118)
++||.++|.+- ..-=.+-+..-.|..+.++.++.+||....++++.
T Consensus 28 ~~LC~~lrL~P-------~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~ 73 (88)
T 2elj_A 28 QQLCIQLKILP-------KPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPI 73 (88)
T ss_dssp HHHHHHTTCCH-------HHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHH
T ss_pred HHHHHHhCCCH-------HHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHH
Confidence 47899998876 43334444455577777888999999999998754
No 25
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.36 E-value=1.2 Score=28.73 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHcCCCCCCC
Q psy3080 89 PEMSVDDAYEALGLTRGSH 107 (118)
Q Consensus 89 ~~mS~edAy~vLGL~~~a~ 107 (118)
++++..+.|+||||++++.
T Consensus 2 s~~~~~~~y~iLgv~~~as 20 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPKSAS 20 (88)
T ss_dssp CSCCCCSHHHHHTCCTTCC
T ss_pred CCCCCCCHHHHcCcCCCCC
Confidence 4567789999999999774
No 26
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=64.57 E-value=4.7 Score=35.91 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=52.2
Q ss_pred ccccCccCccccccchhhhHHHHH-------HHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCC
Q psy3080 30 FCGIPAVRYPQLEQEMFVNIFYLR-------HLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGL 102 (118)
Q Consensus 30 y~pip~i~YpeL~~elfC~~yYLr-------~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL 102 (118)
|-|.-.++ +|-.+-||-..|||. .+.... +|.-.+-|...-++|..| +.|+.+||.+.||-
T Consensus 51 ~~p~~~Lt-~eek~llWk~R~~l~~~~~aL~kfL~sv---~W~~~~e~~~a~~lL~~W--------~~~~~~dALeLL~~ 118 (696)
T 2x6h_A 51 YPPTYVLS-SEEQDLVWKFRFYLSSHKKALTKFLKCI---NWKLEDEVTQALWMLANW--------APMDVEDALELLSP 118 (696)
T ss_dssp SCSSCCCC-SSHHHHHHHHHTTCCCCHHHHHHHGGGT---TTSCHHHHHHHHHHHHHS--------CCCCHHHHHHHHST
T ss_pred CCCCCcCC-HHHHHHHHHhHHHHhhChhHHHHHHhhC---CCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHhcc
Confidence 55665555 344778999999965 455544 898888888889999999 57899999999985
Q ss_pred CCCCCCChHHHHh
Q psy3080 103 TRGSHHEENIVRK 115 (118)
Q Consensus 103 ~~~a~~se~~IRr 115 (118)
.- .+..||+
T Consensus 119 ~f----~~~~VR~ 127 (696)
T 2x6h_A 119 TF----THPQVRK 127 (696)
T ss_dssp TC----CCHHHHH
T ss_pred cC----CCHHHHH
Confidence 43 4456664
No 27
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=61.77 E-value=6.8 Score=25.53 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHhccCCCC---------CCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCC
Q psy3080 52 LRHLCDTAKFP---------DWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLT 103 (118)
Q Consensus 52 Lr~lcd~~rfp---------~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~ 103 (118)
-+.|+..+||+ ++| +|......++|..|+..-.+.+.....-+|+.-.|+.
T Consensus 28 Wk~Lar~Lg~~~~~I~~I~~~~~-~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~~~ 87 (99)
T 1fad_A 28 WKRLARELKVSEAKMDGIEEKYP-RSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRLN 87 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCCcH
Confidence 46788888888 344 5677888899999988764444444566676666654
No 28
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=54.21 E-value=14 Score=24.46 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=31.0
Q ss_pred HHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCCC
Q psy3080 53 RHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGS 106 (118)
Q Consensus 53 r~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~a 106 (118)
+.||.++|.+- ..--.+-+..-.|..+. +.++.+||.+..+++...
T Consensus 28 ~~LC~~lrL~P-------~~YL~~K~~li~E~~~~-g~l~k~da~~~~kiD~~K 73 (90)
T 2aqe_A 28 KELCQVVRLVP-------GAYLEYKSALLNECHKQ-GGLRLAQARALIKIDVNK 73 (90)
T ss_dssp HHHHHHTTCCH-------HHHHHHHHHHHHHHHHH-SCCCHHHHHTTSSSSSHH
T ss_pred HHHHHHhCCCH-------HHHHHHHHHHHHHHHHc-CCCcHHHHHHHHcccHHH
Confidence 57899998876 33334444444466444 449999999999887643
No 29
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=51.78 E-value=25 Score=24.19 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCC
Q psy3080 53 RHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 53 r~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~ 105 (118)
++||.++|.+- ..--.+-+..-.|..++ +.++.+||.+...++..
T Consensus 46 ~~LCs~lrL~P-------~~YL~iK~~Li~E~~k~-g~lkk~dA~~l~kID~~ 90 (108)
T 2cuj_A 46 KELCQVVRLVP-------GAYLEYKSALLNECHKQ-GGLRLAQARALIKIDVN 90 (108)
T ss_dssp HHHHHHTTCCH-------HHHHHHHHHHHHHHHHS-SCCCHHHHHHHHTSCHH
T ss_pred HHHHHHhCCCH-------HHHHHHHHHHHHHHHHc-CCCcHHHHHHHhcccHH
Confidence 57999999886 43334444445566444 45999999999988753
No 30
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=50.37 E-value=19 Score=23.56 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=44.6
Q ss_pred ccCccccccchhhhHHHHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhc---CCCCCCHHHHHHHcCCCCC
Q psy3080 35 AVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVER---KPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 35 ~i~YpeL~~elfC~~yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~k---kp~~mS~edAy~vLGL~~~ 105 (118)
+++=.+|...+.++..||.++....|.+ | .+.+..+|-+-.+ ..+++|+.|.-..+|.+..
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~G~s------~----~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~ 86 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREEETS------Y----SQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSV 86 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHTTCC------H----HHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCC------H----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCH
Confidence 3566899999999999999999875432 2 3444444444433 3578999999999999863
No 31
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=47.47 E-value=6.3 Score=25.48 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.5
Q ss_pred CHHHHHHHcCCCCCCC
Q psy3080 92 SVDDAYEALGLTRGSH 107 (118)
Q Consensus 92 S~edAy~vLGL~~~a~ 107 (118)
...++|+||||++++.
T Consensus 6 ~~~~~y~iLgv~~~as 21 (92)
T 2o37_A 6 KETKLYDLLGVSPSAN 21 (92)
T ss_dssp SCCHHHHHHTCCTTCC
T ss_pred cCCCHHHHcCCCCCCC
Confidence 5578999999999774
No 32
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=47.12 E-value=22 Score=23.75 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCC
Q psy3080 67 NQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLT 103 (118)
Q Consensus 67 ~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~ 103 (118)
+|......++|..|+..-.++...-..-+|+.-.|..
T Consensus 55 ~~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~ 91 (111)
T 2yqf_A 55 NSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRG 91 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcH
Confidence 5778888899999988732333222355666665654
No 33
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=46.33 E-value=14 Score=23.73 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=43.5
Q ss_pred ccCccccccchhhhHHHHHHHhccC-CCCCCCCccHHHHHHHHHHHHHHHhhc---CCCCCCHHHHHHHcCCCCCC
Q psy3080 35 AVRYPQLEQEMFVNIFYLRHLCDTA-KFPDWPINQPIMLLKDVLEAWKAEVER---KPPEMSVDDAYEALGLTRGS 106 (118)
Q Consensus 35 ~i~YpeL~~elfC~~yYLr~lcd~~-rfp~wpI~dpv~lL~~lL~~Wr~E~~k---kp~~mS~edAy~vLGL~~~a 106 (118)
+++=.+|..++-++.-||.++.... |.+ |..+ +...|-+-.+ ..+++|+.|.-..+|.+..+
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s------~~~~----~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s 86 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKEMGEH------FTDY----LNRYRVNYAKEELLQTKDNLTIIAGKSGYTDMA 86 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHSSC------HHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC------HHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHcCCCChH
Confidence 4566899999999999999999775 543 2333 3333333332 24678999999999998633
No 34
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=46.22 E-value=17 Score=24.91 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCC
Q psy3080 67 NQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 67 ~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~ 105 (118)
+|..+..-++|..|+..-.++....+.-+|+.-.|++++
T Consensus 61 ~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~ 99 (114)
T 2of5_A 61 HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPS 99 (114)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTH
T ss_pred CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHH
Confidence 456678888899998874344444457788888888763
No 35
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=42.92 E-value=20 Score=26.18 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=49.8
Q ss_pred ccCccccccchhhhHHHHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhc---CCCCCCHHHHHHHcCCCCCC-----
Q psy3080 35 AVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVER---KPPEMSVDDAYEALGLTRGS----- 106 (118)
Q Consensus 35 ~i~YpeL~~elfC~~yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~k---kp~~mS~edAy~vLGL~~~a----- 106 (118)
+++=.+|++.+..+..||.+++.+.|.+- .. .+...|-+-.+ ..+.+|+.|....+|.+..+
T Consensus 185 ~~sl~~lA~~~~~S~~~l~r~fk~~G~t~------~~----~l~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~ 254 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELESRGVKF------RE----LINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTV 254 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHTTTCCH------HH----HHHHHHHHHHHHHHHHTCCCHHHHHHHTTCSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCCH------HH----HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCHHHHHHH
Confidence 46667899999999999999997655442 33 33344433333 25678999999999998633
Q ss_pred -----CCChHHHHhh
Q psy3080 107 -----HHEENIVRKA 116 (118)
Q Consensus 107 -----~~se~~IRrA 116 (118)
+.++.+.||.
T Consensus 255 Fkk~~G~tP~~yR~~ 269 (276)
T 3gbg_A 255 FKSTMNVAPSEYLFM 269 (276)
T ss_dssp HHHHHSSCHHHHHHH
T ss_pred HHHHHCcCHHHHHHH
Confidence 3366666654
No 36
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=42.47 E-value=26 Score=22.48 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=43.3
Q ss_pred ccCccccccchhhhHHHHHHHhccC-CCCCCCCccHHHHHHHHHHHHHHHhhcC---CCCCCHHHHHHHcCCCCC
Q psy3080 35 AVRYPQLEQEMFVNIFYLRHLCDTA-KFPDWPINQPIMLLKDVLEAWKAEVERK---PPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 35 ~i~YpeL~~elfC~~yYLr~lcd~~-rfp~wpI~dpv~lL~~lL~~Wr~E~~kk---p~~mS~edAy~vLGL~~~ 105 (118)
+++=.+|.+.+-++.-||.+++... |.+ |..++ ...|-+-.++ .+.+|+.|.-..+|.+..
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s------~~~~~----~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~ 87 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQYLGTV------PSKYY----LELRLNRARQLLQQTSKSIVQIGLACGFSSG 87 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHTSSC------HHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHTTCSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC------HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHCCCCH
Confidence 3566899999999999999999885 433 23333 3333333322 457899999999999864
No 37
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=42.37 E-value=28 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhc-CCCCCCHHHHHHHc-CCC
Q psy3080 73 LKDVLEAWKAEVER-KPPEMSVDDAYEAL-GLT 103 (118)
Q Consensus 73 L~~lL~~Wr~E~~k-kp~~mS~edAy~vL-GL~ 103 (118)
-+.+|..|-.+... ++-.||.++|.++. |.+
T Consensus 44 CRNCLskWy~~aA~e~G~~~~~d~ARE~vYGMp 76 (105)
T 2o35_A 44 CRNCLSNWYREAAEASGVPMSKEESREIVYGMP 76 (105)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHcCCcCCHHHHHHHHhCCC
Confidence 36899999877654 68899999999864 554
No 38
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=42.35 E-value=17 Score=23.24 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcC-CCCCCHHHHHHHcCCCC
Q psy3080 73 LKDVLEAWKAEVERK-PPEMSVDDAYEALGLTR 104 (118)
Q Consensus 73 L~~lL~~Wr~E~~kk-p~~mS~edAy~vLGL~~ 104 (118)
.+.+|+-.+..++.+ +...|..|-.+.||||+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCH
Confidence 567888888877776 77899999999999964
No 39
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=41.10 E-value=17 Score=25.58 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhc
Q psy3080 50 FYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVER 86 (118)
Q Consensus 50 yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~k 86 (118)
-+|+.+|+.+|++. ..+..+.++++++...
T Consensus 117 ~~L~~iA~~Lgls~-------~~~~~l~~~~~~~~~~ 146 (161)
T 2ou3_A 117 AKIRKMATILGIKE-------EIVDQLEQLYYYEAAL 146 (161)
T ss_dssp HHHHHHHHHHTCCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHH
Confidence 48999999999999 9999999998887544
No 40
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=40.36 E-value=22 Score=24.38 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCC
Q psy3080 67 NQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 67 ~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~ 105 (118)
+|..+..-++|..|+..-.++....+.-+|..-.|++++
T Consensus 61 ~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~ 99 (115)
T 2o71_A 61 HNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPS 99 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTH
T ss_pred CCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHH
Confidence 455677788889998874444444457788888887753
No 41
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=39.53 E-value=23 Score=22.53 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred ccCccccccchhhhHHHHHHHhccC-CCCCCCCccHHHHHHHHH-HHHHHHhhcCCCCCCHHHHHHHcCCCCCC------
Q psy3080 35 AVRYPQLEQEMFVNIFYLRHLCDTA-KFPDWPINQPIMLLKDVL-EAWKAEVERKPPEMSVDDAYEALGLTRGS------ 106 (118)
Q Consensus 35 ~i~YpeL~~elfC~~yYLr~lcd~~-rfp~wpI~dpv~lL~~lL-~~Wr~E~~kkp~~mS~edAy~vLGL~~~a------ 106 (118)
+++=.+|.+++..+.-||.++.... |.+ |...+..+- +.-+..+. .+++|+.|.-..+|.+..+
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s------~~~~~~~~Rl~~A~~lL~--~~~~si~~IA~~~Gf~~~s~F~r~F 91 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQLGIS------VLSWREDQRISQAKLLLS--TTRMPIATVGRNVGFDDQLYFSRVF 91 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHHHSSC------HHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCcC------HHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 4567889999999999999999874 543 234333331 22222222 3579999999999998643
Q ss_pred ----CCChHHHHhh
Q psy3080 107 ----HHEENIVRKA 116 (118)
Q Consensus 107 ----~~se~~IRrA 116 (118)
+.++.+.|+.
T Consensus 92 k~~~G~tP~~yr~~ 105 (107)
T 2k9s_A 92 KKCTGASPSEFRAG 105 (107)
T ss_dssp HHHHSSCHHHHHHT
T ss_pred HHHHCcCHHHHHhh
Confidence 2366666654
No 42
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=38.87 E-value=7.4 Score=24.07 Aligned_cols=13 Identities=54% Similarity=1.025 Sum_probs=11.0
Q ss_pred HHHHHcCCCCCCC
Q psy3080 95 DAYEALGLTRGSH 107 (118)
Q Consensus 95 dAy~vLGL~~~a~ 107 (118)
+.|++|||+++++
T Consensus 4 ~~y~iLgv~~~as 16 (77)
T 1hdj_A 4 DYYQTLGLARGAS 16 (77)
T ss_dssp CSHHHHTCCTTCC
T ss_pred CHHHHcCCCCCCC
Confidence 5799999998774
No 43
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=38.72 E-value=27 Score=24.37 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhc-CCCCCCHHHHHHHc-CCC
Q psy3080 73 LKDVLEAWKAEVER-KPPEMSVDDAYEAL-GLT 103 (118)
Q Consensus 73 L~~lL~~Wr~E~~k-kp~~mS~edAy~vL-GL~ 103 (118)
-+.+|+.|-.+... ++..||.++|.++. |.+
T Consensus 43 CRNCLskWy~~aA~~~G~~~~~d~ARE~vYGMp 75 (104)
T 3fyb_A 43 CRNCLAKWLMEAATEQGVELDYDGAREYVYGMP 75 (104)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHcCCcCCHHHHHHHHhCCC
Confidence 36899999887644 58899999999864 554
No 44
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=38.32 E-value=10 Score=21.15 Aligned_cols=16 Identities=13% Similarity=0.580 Sum_probs=12.3
Q ss_pred ccccccccccCccCcc
Q psy3080 24 NRAVYQFCGIPAVRYP 39 (118)
Q Consensus 24 ~~a~y~y~pip~i~Yp 39 (118)
+...|+|||.|.+.+-
T Consensus 2 C~rrW~~C~~~i~G~i 17 (31)
T 1rmk_A 2 CSKKWEYCIVPILGFV 17 (31)
T ss_dssp EECTTSCCCCCTTCCC
T ss_pred ccccccccccceEEEE
Confidence 3568999999987653
No 45
>2gf4_A Protein VNG1086C; HSR14, structural genomics, PSI, protein structure initiativ northeast structural genomics consortium, NESG, unknown FUN; 2.07A {Halobacterium SP} SCOP: a.8.10.1
Probab=35.59 E-value=67 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHcCCCCCCCC-ChHHHHhh
Q psy3080 70 IMLLKDVLEAWKAEVERKPPEMS-VDDAYEALGLTRGSHH-EENIVRKA 116 (118)
Q Consensus 70 v~lL~~lL~~Wr~E~~kkp~~mS-~edAy~vLGL~~~a~~-se~~IRrA 116 (118)
.-.|-++|...+..++.+.+.-. .=+.|..||++|..-+ |.++=|.|
T Consensus 6 LI~LH~lLv~V~~~~e~~~~~~~~~f~~Y~~L~I~P~hIHKsK~eHK~A 54 (100)
T 2gf4_A 6 LLELHEQMVNIKDQFLGFDHVDETAFAAYEELDVEPSHVHKSKSEHKHA 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCTTTTHHHHHHTCCTTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCchhhhHHHHHcCCChhhhcCCHHHHHHH
Confidence 45678888888888877544322 3589999999997733 77776665
No 46
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=35.19 E-value=38 Score=21.27 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=43.4
Q ss_pred CccCccccccchhhhHHHHHHHhccC-CCCCCCCccHHHHHHHHHHHHHHHhhc---CCCCCCHHHHHHHcCCCCC
Q psy3080 34 PAVRYPQLEQEMFVNIFYLRHLCDTA-KFPDWPINQPIMLLKDVLEAWKAEVER---KPPEMSVDDAYEALGLTRG 105 (118)
Q Consensus 34 p~i~YpeL~~elfC~~yYLr~lcd~~-rfp~wpI~dpv~lL~~lL~~Wr~E~~k---kp~~mS~edAy~vLGL~~~ 105 (118)
++++-.+|.+.+-++.-||.++.... |.+- ..+ +...|-+-.+ ..+++|+.|.-..+|.+..
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~------~~~----~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~ 83 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF------QDY----LLQKRMEKAKLLLLTTELKNYEIAEQVGFEDV 83 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH------HHH----HHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH------HHH----HHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCH
Confidence 35667899999999999999998876 5432 233 3333333222 2457899999999999853
No 47
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=33.75 E-value=30 Score=32.44 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=44.8
Q ss_pred cccchhhhHHHHHHHhcc----CCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCCCCCChHHHHh
Q psy3080 41 LEQEMFVNIFYLRHLCDT----AKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRK 115 (118)
Q Consensus 41 L~~elfC~~yYLr~lcd~----~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~a~~se~~IRr 115 (118)
-.+-||-..|||.+.-+. ++.=+|--.+-|..+-++|..| +.++.++|.+.||-.- .+..||+
T Consensus 570 ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~e~~~LL~~W--------~~i~~~~ALeLL~~~f----~d~~VR~ 636 (1091)
T 3hhm_A 570 EKDFLWSHRHYCVTIPEILPKLLLSVKWNSRDEVAQMYCLVKDW--------PPIKPEQAMELLDCNY----PDPMVRG 636 (1091)
T ss_dssp HHHHHHHTHHHHTTSGGGHHHHHTTSCTTCHHHHHHHHHHHHTC--------CCCCHHHHHHTTSTTC----CCHHHHH
T ss_pred HHHHHHHHHHHhccChhHHHHHheeCCCCCHHHHHHHHHHHhcC--------CCCCHHHHHHhCcccC----CCHHHHH
Confidence 346799999998662221 2223788777888888899888 5689999999997542 4466654
No 48
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=33.38 E-value=55 Score=24.33 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=34.7
Q ss_pred HHHHHhccCCCC----CCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH-cCCCCCC
Q psy3080 51 YLRHLCDTAKFP----DWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEA-LGLTRGS 106 (118)
Q Consensus 51 YLr~lcd~~rfp----~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~v-LGL~~~a 106 (118)
.|++-|...|.+ +++.-|...+.+.+...+.-......++.+.+++++- +|++...
T Consensus 133 fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~ 193 (242)
T 3mxm_B 133 LLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD 193 (242)
T ss_dssp HHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC
Confidence 566666666643 4577788888887654432111112356789999966 9999754
No 49
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=32.97 E-value=2.8 Score=30.18 Aligned_cols=25 Identities=28% Similarity=0.162 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCCCC-------CCChHHHHhhc
Q psy3080 93 VDDAYEALGLTRGS-------HHEENIVRKAY 117 (118)
Q Consensus 93 ~edAy~vLGL~~~a-------~~se~~IRrAY 117 (118)
+==|+..+|.+... +.++.+||++|
T Consensus 155 ly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~ 186 (200)
T 1ais_B 155 LYIASLLEGEKRTQREVAEVARVTEVTVRNRY 186 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 33456667766422 33788888876
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=32.88 E-value=9.2 Score=30.70 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHcCCCC-------CCCCChHHHHhhc
Q psy3080 50 FYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMS---VDDAYEALGLTR-------GSHHEENIVRKAY 117 (118)
Q Consensus 50 yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS---~edAy~vLGL~~-------~a~~se~~IRrAY 117 (118)
-|+.++|..+++++--.+.-..+++...+.|-- .-|+|.++- +==|.+++|... -++.++.+||++|
T Consensus 237 ~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~-~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ry 313 (345)
T 4bbr_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEI-AGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccc-cCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 478889999999875555556666666666633 234454442 112334444332 2234777888887
No 51
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.29 E-value=1.2e+02 Score=20.82 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=27.4
Q ss_pred HHHhccCCCCC---------CCCccHHHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHcCCC
Q psy3080 53 RHLCDTAKFPD---------WPINQPIMLLKDVLEAWKAEVERKPPEMS---VDDAYEALGLT 103 (118)
Q Consensus 53 r~lcd~~rfp~---------wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS---~edAy~vLGL~ 103 (118)
+.|+..+||++ .| +|.-....++|..|+.. .+..-| .-+|+.-.|..
T Consensus 21 k~LAR~LGlse~dId~Ie~~~p-~dl~eq~~~mL~~W~~r---~G~~ATv~~L~~AL~~i~~~ 79 (122)
T 3ezq_B 21 RRLARQLKVSDTKIDSIEDRYP-RNLTERVRESLRIWKNT---EKENATVAHLVGALRSCQMN 79 (122)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH---CTTTCCHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHh---hCCCchHHHHHHHHHHCCCH
Confidence 45566666662 22 35667788889999875 333333 45555555544
No 52
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=27.74 E-value=41 Score=31.50 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=41.2
Q ss_pred cccccchhhhHHHHHH--------HhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCC
Q psy3080 39 PQLEQEMFVNIFYLRH--------LCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLT 103 (118)
Q Consensus 39 peL~~elfC~~yYLr~--------lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~ 103 (118)
++-.+-||-..|||.+ |.... +|--.+-|..+-++|..| +.++.++|.+.||-.
T Consensus 574 ~~ek~llW~~R~~~~~~~p~aL~k~l~sv---~w~~~~e~~e~~~lL~~W--------~~i~p~~ALeLL~~~ 635 (1092)
T 2y3a_A 574 ENEMDLIWTLRQDCRENFPQSLPKLLLSI---KWNKLEDVAQLQALLQIW--------PKLPPREALELLDFN 635 (1092)
T ss_dssp HHHHHHHHHTHHHHHHHCGGGHHHHHHHS---CTTCHHHHHHHHHHHHTS--------CCCCHHHHGGGGSTT
T ss_pred HHHHHHHHHhHHHHHhcCcHHHHHHHhhc---CCCCHHHHHHHHHHHccC--------CCCCHHHHHHhcCcc
Confidence 3445679999999864 44444 687667778888888888 568999999999854
No 53
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=27.71 E-value=30 Score=26.85 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHcCCCCCC---CCChHHHHhh
Q psy3080 87 KPPEMSVDDAYEALGLTRGS---HHEENIVRKA 116 (118)
Q Consensus 87 kp~~mS~edAy~vLGL~~~a---~~se~~IRrA 116 (118)
.+|-|+.+|.|..+.=..+. .+|+++|.||
T Consensus 91 nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rA 123 (234)
T 3cuq_A 91 NGGLITLEELHQQVLKGRGKFAQDVSQDDLIRA 123 (234)
T ss_dssp HSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHH
T ss_pred cCCeeEHHHHHHHHHHhcCCccCccCHHHHHHH
Confidence 48889999999999655442 4599999887
No 54
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=27.70 E-value=58 Score=29.89 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=42.7
Q ss_pred cchhhhHHHHHH-----HhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCCCCCCChHHHHh
Q psy3080 43 QEMFVNIFYLRH-----LCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRK 115 (118)
Q Consensus 43 ~elfC~~yYLr~-----lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~~a~~se~~IRr 115 (118)
+-||-..|||.+ |-.-+.-=+|--.+-|..+-++|..| +.++.++|.+.||-.- .+..||+
T Consensus 425 ~llW~~R~~~~~~~p~aL~~~l~sv~w~~~~~~~~~~~ll~~W--------~~~~~~~ALeLL~~~f----~d~~Vr~ 490 (940)
T 2wxf_A 425 DLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLYLLCSW--------PELPVLSALELLDFSF----PDCYVGS 490 (940)
T ss_dssp HHHHHTHHHHHHHCGGGHHHHHTTSCTTCHHHHHHHHHHHHTC--------CCCCHHHHHHHTSTTC----CCHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHhccCCCCHHHHHHHHHHHccC--------CCCCHHHHHHhcCCcC----CCHHHHH
Confidence 448999999864 11112223787777788888899988 5789999999997442 4455654
No 55
>3tk2_A Phenylalanine-4-hydroxylase; protein-substate complex, mixed alpha, beta, tetrahydrobiopterin, iron (II), molecular OX hydroxylation; HET: PHE; 1.35A {Chromobacterium violaceum} PDB: 3tk4_A 3tcy_A* 1ltz_A* 1ltv_A 1ltu_A*
Probab=27.70 E-value=57 Score=26.38 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=42.4
Q ss_pred cccCccCccccccchhhhHH--------------HHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcC----CCCCC
Q psy3080 31 CGIPAVRYPQLEQEMFVNIF--------------YLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERK----PPEMS 92 (118)
Q Consensus 31 ~pip~i~YpeL~~elfC~~y--------------YLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kk----p~~mS 92 (118)
+|+|-+.|.+-|+++|=..| ||..| +.++++. |-+.+|+++=+..++.-..+ ++-+|
T Consensus 34 ~pqp~~~YT~~E~~~W~~l~~r~~~l~~~~Ac~eyl~gl-~~l~~~~----d~IPql~~vn~~L~~~TGw~l~pV~Gli~ 108 (302)
T 3tk2_A 34 LPQPLDRYSAEDHATWATLYQRQCKLLPGRACDEFMEGL-ERLEVDA----DRVPDFNKLNQKLMAATGWKIVAVPGLIP 108 (302)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHCTTTBCHHHHHHH-HHTTCCS----SSCCCHHHHHHHHHHHHSCEEEEESSSCC
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHhhchhhHHHHHHH-HHcCCCc----ccCCCHHHHHHHHHhhcCcEEEecCccCC
Confidence 59999999999999996665 88877 4457765 33345666655555544333 55555
Q ss_pred HHHHHHHc
Q psy3080 93 VDDAYEAL 100 (118)
Q Consensus 93 ~edAy~vL 100 (118)
..+=++.|
T Consensus 109 ~~~Ff~~L 116 (302)
T 3tk2_A 109 DDVFFEHL 116 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 56
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=26.83 E-value=18 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHcCCCCCC
Q psy3080 69 PIMLLKDVLEAWKAEVER--KPPEMSVDDAYEALGLTRGS 106 (118)
Q Consensus 69 pv~lL~~lL~~Wr~E~~k--kp~~mS~edAy~vLGL~~~a 106 (118)
+++-+.++|+...-..+. +|+.-|.+++.+.||++++.
T Consensus 3 ~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~ 42 (152)
T 3op6_A 3 PVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQ 42 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSC
T ss_pred cHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhh
Confidence 345566677666544433 58888999999999998754
No 57
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=26.01 E-value=45 Score=22.19 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCCC
Q psy3080 71 MLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTR 104 (118)
Q Consensus 71 ~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~~ 104 (118)
..+..+.+..+.-++. .+.+|..|+.+.||++.
T Consensus 62 ~~~~~~~~~l~~~~~~-~~~it~ae~Rd~lg~sR 94 (121)
T 2pjp_A 62 DRIVEFANMIRDLDQE-CGSTCAADFRDRLGVGR 94 (121)
T ss_dssp HHHHHHHHHHHHHHHH-HSSEEHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHH-CCCccHHHHHHHHCCcH
Confidence 4555555555554433 47899999999999774
No 58
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=25.93 E-value=1.8e+02 Score=20.58 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=14.9
Q ss_pred HHHHHcCCCCCC-------CCChHHHHhhc
Q psy3080 95 DAYEALGLTRGS-------HHEENIVRKAY 117 (118)
Q Consensus 95 dAy~vLGL~~~a-------~~se~~IRrAY 117 (118)
=|...+|.+... +.++.+||++|
T Consensus 151 lA~~~~~~~~~~~~i~~~~~v~~~tI~~~~ 180 (207)
T 1c9b_A 151 MASQASAEKRTQKEIGDIAGVADVTIRQSY 180 (207)
T ss_dssp HHHHTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 356667766422 34788888877
No 59
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=25.70 E-value=55 Score=19.85 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCCCCccHHHHHHHH-HHHHHHHhhcCC------CCCCHHHHHHHcCCCC
Q psy3080 61 FPDWPINQPIMLLKDV-LEAWKAEVERKP------PEMSVDDAYEALGLTR 104 (118)
Q Consensus 61 fp~wpI~dpv~lL~~l-L~~Wr~E~~kkp------~~mS~edAy~vLGL~~ 104 (118)
+++|...|-...|+++ +.....-+.++. ..||.+| .+.||++.
T Consensus 4 v~~Ws~~~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~d-L~~lGI~~ 53 (74)
T 2gle_A 4 VHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNK-LKALGMTS 53 (74)
T ss_dssp GGGCCSGGGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHH-HHTTTCCC
T ss_pred cccCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHH-HHHcCCCC
Confidence 5689999999998876 344444444431 1567777 89999985
No 60
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=25.64 E-value=47 Score=23.61 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHc
Q psy3080 52 LRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEAL 100 (118)
Q Consensus 52 Lr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vL 100 (118)
|..++.....++.+=..-..-+..++..|...+...|. ..+||+.|
T Consensus 96 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~---i~~~Y~~L 141 (149)
T 3g2s_A 96 LIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVK---IAEAYQML 141 (149)
T ss_dssp HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCHH---HHHHHHHH
T ss_pred HHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCch---HHHHHHHH
Confidence 45555432112333344456788899999998754443 89999987
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=25.62 E-value=23 Score=26.36 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=17.9
Q ss_pred HHHHHcCCCCCCCCChHHHHhhc
Q psy3080 95 DAYEALGLTRGSHHEENIVRKAY 117 (118)
Q Consensus 95 dAy~vLGL~~~a~~se~~IRrAY 117 (118)
+.|++||+...+ +.++++++|
T Consensus 383 ~~y~~lg~~~~~--~~~~~~~~y 403 (450)
T 2y4t_A 383 DYYKILGVKRNA--KKQEIIKAY 403 (450)
T ss_dssp CSGGGSCSSTTC--CTTHHHHHH
T ss_pred hHHHHhCCCccC--CHHHHHHHH
Confidence 568889999888 888999887
No 62
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=25.43 E-value=48 Score=24.10 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=35.0
Q ss_pred hHHHHHHHhccCCCCCCC--------------------CccHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHcCCC
Q psy3080 48 NIFYLRHLCDTAKFPDWP--------------------INQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLT 103 (118)
Q Consensus 48 ~~yYLr~lcd~~rfp~wp--------------------I~dpv~lL~~lL~~Wr~E~~kkp~~mS~edAy~vLGL~ 103 (118)
-.-|+..+|+.+| .+|. -+|......++|..|+..-.+++...+.-+|..-.|..
T Consensus 97 ~~~~~~~ia~~lg-~~Wk~Lar~Lgl~~~~I~~I~~~~~~d~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~~~ 171 (191)
T 2gf5_A 97 LCAAFNVICDNVG-KDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMN 171 (191)
T ss_dssp HHHHHHHHHHSCC-TTHHHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHccc-hhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcCcH
Confidence 4456667777777 6665 14667888889999987643333333456666666644
No 63
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator, nucleus, hydrolase; 2.48A {Homo sapiens}
Probab=25.24 E-value=1.4e+02 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=28.2
Q ss_pred CccHHHHHHHHHHHHHHHhhcC--------------CCCCCHHHHHHHcCCCCCC
Q psy3080 66 INQPIMLLKDVLEAWKAEVERK--------------PPEMSVDDAYEALGLTRGS 106 (118)
Q Consensus 66 I~dpv~lL~~lL~~Wr~E~~kk--------------p~~mS~edAy~vLGL~~~a 106 (118)
|-++-.++-++-.+-....+.+ +|+=.+.||++.+|++++.
T Consensus 50 I~s~~hll~Ai~kAl~~~~~g~l~Tr~l~sEIl~~LSp~~nI~eAlkrfGI~~~~ 104 (177)
T 3enp_A 50 IVDPFQILVAANKAVHLYKLGKMKTRTLSTEIIFNLSPNNNISEALKKFGISAND 104 (177)
T ss_dssp CSCHHHHHHHHHHHHHHHTTTCCSSSSHHHHHHHHHCSSSCHHHHHHHHBCCTTC
T ss_pred hCCHHHHHHHHHHHHHHHHcCCcCcCChHHHHhhhhCccccHHHHHHHhCCCCCC
Confidence 5666677777777766654332 2233499999999999974
No 64
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=24.78 E-value=95 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHc
Q psy3080 73 LKDVLEAWKAEVERKPPEMSVDDAYEAL 100 (118)
Q Consensus 73 L~~lL~~Wr~E~~kkp~~mS~edAy~vL 100 (118)
++.+++-.+.-++.+++.||.+|+-++|
T Consensus 54 ~dav~~Gl~Dal~Gk~~~ls~eei~~~l 81 (88)
T 3b09_A 54 IPAVQAGLADAFAGKESAVSMEELQVAF 81 (88)
T ss_dssp HHHHHHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3444444455566688899999987766
No 65
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=23.91 E-value=24 Score=21.12 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=12.7
Q ss_pred CCHHHHHHHcCCCCC
Q psy3080 91 MSVDDAYEALGLTRG 105 (118)
Q Consensus 91 mS~edAy~vLGL~~~ 105 (118)
||..|+.+.|||++.
T Consensus 3 lt~~e~a~~LgvS~~ 17 (68)
T 1j9i_A 3 VNKKQLADIFGASIR 17 (68)
T ss_dssp EEHHHHHHHTTCCHH
T ss_pred cCHHHHHHHHCcCHH
Confidence 578999999999863
No 66
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=22.73 E-value=67 Score=20.89 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHHHHHhhcC-CCCCC
Q psy3080 67 NQPIMLLKDVLEAWKAEVERK-PPEMS 92 (118)
Q Consensus 67 ~dpv~lL~~lL~~Wr~E~~kk-p~~mS 92 (118)
.+||.| +++|++.+.-. ||.|.
T Consensus 2 v~pvgf----~eaW~aqfp~~epp~m~ 24 (72)
T 1k1f_A 2 VDPVGF----AEAWKAQFPDSEPPRME 24 (72)
T ss_dssp CCHHHH----HHHHHHHCTTSCCCCCC
T ss_pred CchhHH----HHHHHHhCCCCCCcHhH
Confidence 478876 46899998664 77774
No 67
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=21.39 E-value=67 Score=23.98 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred hccCCCCCCCCccHHHHHHHHHHHHHHHhhcC--------CCCCCHHHHHH
Q psy3080 56 CDTAKFPDWPINQPIMLLKDVLEAWKAEVERK--------PPEMSVDDAYE 98 (118)
Q Consensus 56 cd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kk--------p~~mS~edAy~ 98 (118)
.++++|++ =+..|+..|..||.+...+ ..+||.+|...
T Consensus 78 l~~LgF~~-----fv~~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~ 123 (179)
T 1jfi_B 78 LESLGFGS-----YISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLR 123 (179)
T ss_dssp HHHHTTGG-----GHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHH
T ss_pred HHhcChHH-----HHHHHHHHHHHHHHHHHhCccccchhhccCCCHHHHHH
Confidence 34778886 3567889999999876543 66788887654
No 68
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.39 E-value=25 Score=20.24 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHcCCCCCC
Q psy3080 88 PPEMSVDDAYEALGLTRGS 106 (118)
Q Consensus 88 p~~mS~edAy~vLGL~~~a 106 (118)
-.++|.+|.-+.||+++++
T Consensus 29 ~~g~s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGT 47 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHH
T ss_pred HcCCCHHHHHHHHCcCHHH
Confidence 3468999999999998765
No 69
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=20.60 E-value=36 Score=25.23 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=16.2
Q ss_pred cCCCCCCCCccHHHHHHHHH
Q psy3080 58 TAKFPDWPINQPIMLLKDVL 77 (118)
Q Consensus 58 ~~rfp~wpI~dpv~lL~~lL 77 (118)
+--|-+||.+||+++++.+.
T Consensus 97 ~WQFk~w~~~~P~elF~~v~ 116 (170)
T 3v46_A 97 TWQFNNYQWNSPQELFQRCK 116 (170)
T ss_dssp GGGGTTSSSCSHHHHHHHSE
T ss_pred hhhcCCCCCCChHHHhccce
Confidence 34588999999999988754
No 70
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=20.59 E-value=21 Score=28.30 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHhccCCCCCCCCccHHHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHcCCCCC-------CCCChHHHHhhc
Q psy3080 50 FYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMS---VDDAYEALGLTRG-------SHHEENIVRKAY 117 (118)
Q Consensus 50 yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~Wr~E~~kkp~~mS---~edAy~vLGL~~~-------a~~se~~IRrAY 117 (118)
-|+.++|..+++++--.+.-..+++..+..|-- ..++|.++. +==|..++|.... ++.++.+||++|
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~-~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEI-AGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchh-cCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 568888999988864444555666666666642 234455442 2233444554421 134777888776
Done!