RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3080
(118 letters)
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 86 RKPPEMSVDDAYEALGLTRGSHHEENIVRKAY 117
+ +++DAY+ LG++ +E +++AY
Sbjct: 192 QAQRGPTLEDAYKVLGVSESDDDQE--IKRAY 221
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 25.6 bits (57), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 95 DAYEALGLTRGSHHEENIVRKAYY 118
D Y+ LG+ + EE ++KAY
Sbjct: 1 DYYDILGVPPDASDEE--IKKAYR 22
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 25.6 bits (57), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 95 DAYEALGLTRGSHHEENIVRKAYY 118
D YE LG+ R + EE ++KAY
Sbjct: 1 DYYEILGVPRDASDEE--IKKAYR 22
>gnl|CDD|148604 pfam07092, DUF1356, Protein of unknown function (DUF1356). This
family consists of several hypothetical mammalian
proteins of around 250 residues in length. The function
of this family is unknown.
Length = 231
Score = 26.7 bits (59), Expect = 2.7
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 4 LLIGKIAAHIADFT--PRLRGNNRAVYQFCGIPAVRYPQ--LEQEMFVNIFYLRH 54
I ++ ++T + +Y FC +P+++ L + V YL H
Sbjct: 158 THIHPLSEKQVNYTVKAEIGDELSYLYFFCTLPSIKVHNIVLFMQTTVTTSYLGH 212
>gnl|CDD|236909 PRK11424, PRK11424, DNA-binding transcriptional activator TdcR;
Provisional.
Length = 114
Score = 26.1 bits (57), Expect = 2.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 6 IGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFY--LRHLCDTAKFP 62
I A HI F+ L N YQ+ I LEQ + VN F C+ +FP
Sbjct: 58 INNAARHI--FSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP 114
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 26.5 bits (58), Expect = 3.6
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 95 DAYEALGLTRGSHHEENIVRKAY 117
D YE LGL++G+ +E ++KAY
Sbjct: 4 DYYEILGLSKGASKDE--IKKAY 24
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 26.6 bits (59), Expect = 3.9
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
M+ D YE LG+++ + +E ++KAY
Sbjct: 1 MAKRDYYEVLGVSKSASKDE--IKKAY 25
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 26.3 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 89 PEMSVDDAYEALGLTRGSHHE-ENIVRK 115
P S ++A E LGL S E E I+ +
Sbjct: 552 PGKSAEEAAEELGLKGLSEEEVEKIIDE 579
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 26.0 bits (57), Expect = 4.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 72 LLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRG 105
L +LEA +A +E PPE+S D + LT G
Sbjct: 254 SLLHILEAIRATLEDCPPELSGDIVDRGVILTGG 287
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 24.9 bits (55), Expect = 4.9
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 95 DAYEALGLTRGSHHEENIVRKAYY 118
D YE LG+ R + +E ++KAY
Sbjct: 2 DYYEILGVPRDASLDE--IKKAYR 23
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 25.8 bits (56), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 80 WKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKA 116
W+ + PP M+ DD Y A R + +++++ A
Sbjct: 113 WRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDA 149
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family
consists of the SPRY domain-containing SOCS box protein
family (SPSB1-4, also known as SSB-1 to -4) as well as
F-box protein 45 (Fbxo45), a novel synaptic E3 and
ubiquitin ligase. The SPSB protein is composed of a
central SPRY protein interaction domain and a C-terminal
SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate
apoptosis response protein 4 (Par-4) and are negative
regulators that recruit the ECS E3 ubiquitin ligase
complex to polyubiquitinate inducible nitric-oxide
synthase (iNOS), resulting in its proteasomal
degradation. Fbxo45 is related to this family; it is
located N-terminal to the SPRY domain, and known to
induce the degradation of a synaptic vesicle-priming
factor, Munc13-1, via the SPRY domain, thus playing an
important role in the regulation of neurotransmission by
modulating Munc13-1 at the synapse. Suppressor of
cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of
immune homeostasis.
Length = 171
Score = 25.8 bits (57), Expect = 5.8
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 84 VERKPPEMSVDDAYEALGLTRGSH 107
R+P S D +G +RG H
Sbjct: 21 FHRRPVAQSTDAIRGKIGYSRGLH 44
>gnl|CDD|164905 PHA02265, PHA02265, hypothetical protein.
Length = 103
Score = 25.5 bits (55), Expect = 5.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 74 KDVLEAWKAEVERKPPEMSVDDAYEAL 100
+ + K E+ + P E+ + A+
Sbjct: 7 RAIYTEMKVELHKFPKEVDITSKSTAI 33
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 25.9 bits (57), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
M+ D YE LGL +G+ +E ++KA+
Sbjct: 1 MASKDYYEVLGLEKGASDDE--IKKAF 25
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase
inhibitor.
Length = 509
Score = 25.7 bits (56), Expect = 7.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 22 GNNRAVYQFCGIPAVRYPQLEQEMFV 47
GN AV+QFC I A R P + Q +
Sbjct: 351 GNAAAVFQFCQIVA-RQPMMGQSNVI 375
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 25.7 bits (56), Expect = 7.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
MS D YE LG+ R + +E V+KAY
Sbjct: 1 MSKRDYYEVLGVDRNASVDE--VKKAY 25
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 25.4 bits (56), Expect = 8.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 53 RHLCDT--AKFPDWPINQPIMLLKDVLEAWKAEVE 85
+ LC + I LL+ ++A K E E
Sbjct: 32 QQLCLYNLENLNENNIKDEHDLLEAFIKAAKYEGE 66
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 25.6 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 103 TRGSHH-EENIVRKAY 117
+RGS H + I+RKAY
Sbjct: 37 SRGSSHGQSRIIRKAY 52
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 25.5 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
MS D YE LG++R + +E ++KAY
Sbjct: 1 MSQRDYYEVLGVSRDASEDE--IKKAY 25
>gnl|CDD|236264 PRK08432, PRK08432, flagellar motor switch protein FliY; Validated.
Length = 283
Score = 25.4 bits (56), Expect = 9.2
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 66 INQPIMLLKDVL 77
I Q MLLKDVL
Sbjct: 214 IGQKKMLLKDVL 225
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 25.3 bits (56), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAYY 118
M+ D YE LG+++ + EE ++KAY
Sbjct: 1 MAKRDYYEILGVSKDASEEE--IKKAYR 26
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.442
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,390,364
Number of extensions: 557877
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 38
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)