RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3080
(118 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.005
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 22/95 (23%)
Query: 4 LLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQ--EMFVNIF----YLRHLCD 57
+ IA I D +N ++ V +L E +N+ Y +
Sbjct: 328 RRLSIIAESIRDGLATW--DN---WKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 58 TAKFP-DWPINQPIMLLKDVLEAWKAEVERKPPEM 91
+ FP I P +LL ++ W ++ +
Sbjct: 378 LSVFPPSAHI--PTILLS-LI--WFDVIKSDVMVV 407
Score = 27.5 bits (60), Expect = 1.1
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 31 CG-----IPAVRYPQLEQEMFVNIFYLR-HLCDTAKFPDWPINQPIMLLKDVLEAWKAEV 84
G + +++ +M IF+L C++ P+ + LL + W +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRS 217
Query: 85 ER-KPPEMSVDDAYEAL 100
+ ++ + L
Sbjct: 218 DHSSNIKLRIHSIQAEL 234
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 31.2 bits (71), Expect = 0.015
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 89 PEMSVDDAYEALGLTRGSHHEENIVRKAYY 118
P+M+ +A + L LT + ++ + ++ +
Sbjct: 9 PKMNSKEALQILNLTENTLTKKKL-KEVHR 37
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 28.2 bits (63), Expect = 0.39
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+++ Y+ L + R ++ + KAY
Sbjct: 12 CGLENCYDVLEVNREEFDKQKL-AKAY 37
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 27.4 bits (61), Expect = 0.69
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
S + Y LGL + + ++ ++K+Y
Sbjct: 14 TSGESLYHVLGLDKNATSDD--IKKSY 38
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 27.0 bits (59), Expect = 1.7
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+ Y LG+++ + E +R+A+
Sbjct: 18 RHDQNFYSLLGVSKTASSRE--IRQAF 42
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 25.7 bits (57), Expect = 1.7
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
S D YE LG++RG+ E+ ++KAY
Sbjct: 4 GSSGDYYEILGVSRGASDED--LKKAY 28
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 26.3 bits (58), Expect = 1.8
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 90 EMSVDDAYEALGLTRGSHHEENIVRKAY 117
+M D Y LG ++ + +++ Y
Sbjct: 6 QMPKKDWYSILGADPSANISD--LKQKY 31
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 25.7 bits (57), Expect = 1.9
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
S Y+ LG+ + + + ++KA+
Sbjct: 4 GSSGSYYDILGVPKSASERQ--IKKAF 28
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 26.5 bits (59), Expect = 2.0
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 14/44 (31%)
Query: 51 YLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERK-PPEMSV 93
+R C P + L +L+A K V R+ PE +
Sbjct: 279 LIRSTC-----PRF--------LLGLLDAGKMYVHRQVKPEAWL 309
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 25.8 bits (57), Expect = 2.0
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAYY 118
S Y+ LG+ + + ++ AYY
Sbjct: 14 YSRTALYDLLGVPSTATQAQ--IKAAYY 39
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 25.3 bits (56), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAYY 118
S D Y+ LG+ R + +E ++KAYY
Sbjct: 4 GSSGDYYQILGVPRNASQKE--IKKAYY 29
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 25.7 bits (57), Expect = 2.4
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+ + YE LG+ + E+ ++KAY
Sbjct: 6 SGMANYYEVLGVQASASPED--IKKAY 30
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 25.1 bits (55), Expect = 3.2
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+ D+++ LG+ G+ +E V KAY
Sbjct: 24 RNSKDSWDMLGVKPGASRDE--VNKAY 48
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 24.9 bits (55), Expect = 3.2
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+ D YE L + R + E ++KAY
Sbjct: 6 SGMVDYYEVLDVPRQASSEA--IKKAY 30
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 26.0 bits (58), Expect = 3.2
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 51 YLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERK-PPEMSV 93
+L H+ ++ FP++ + + E + ++ER+ PP V
Sbjct: 161 FLEHIF-SSSFPNY--------ILMLHEEGRTDLERRVPPMAVV 195
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 26.0 bits (58), Expect = 3.3
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 51 YLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERK-PPEMSV 93
L C P + ++ +LEA K+++E++ P +
Sbjct: 163 LLNDTC-----PLF--------VRGLLEAGKSDLEKQEKPVAWL 193
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia
coli} PDB: 2eb5_A 2eb6_A
Length = 267
Score = 25.5 bits (56), Expect = 4.3
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 71 MLLKDVLEA-----WKAEVERKP--------PEMSVDDAYE 98
M K +AE +R+ PE++++DAY
Sbjct: 1 MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYA 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 4.3
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 33/102 (32%)
Query: 22 GNN-------RAVYQFCGIPAVRYPQLEQEMFVNIF-YLRHLCDTAKFPDWPINQPIMLL 73
GN R +YQ Y L ++ L L T + Q +
Sbjct: 164 GNTDDYFEELRDLYQ-------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--- 213
Query: 74 KDVLEAWKAEVERKPPEMSVDDAYEA--------LGLTRGSH 107
++L W P D Y +G+ + +H
Sbjct: 214 -NIL-EWLENPSNTP-----DKDYLLSIPISCPLIGVIQLAH 248
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 25.3 bits (55), Expect = 5.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 95 DAYEALGLTRGSHHEENIVRKAY 117
+ LGL R + ++RKAY
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAY 34
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 24.8 bits (54), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 95 DAYEALGLTRGSHHEENIVRKAY 117
+ LGL R + ++RKAY
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAY 31
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 24.7 bits (54), Expect = 5.7
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 91 MSVDDAYEALGLTRGSHHEENIVRKAY 117
+D Y LG S E+ + +
Sbjct: 17 EDTEDYYTLLGCDELSSVEQ--ILAEF 41
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic
hydrocarbons catabolism; 2.80A {Escherichia coli} PDB:
1sv6_A
Length = 270
Score = 25.1 bits (55), Expect = 5.8
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 13/41 (31%)
Query: 71 MLLKDVLEA-----WKAEVERKP--------PEMSVDDAYE 98
++ K LE +A + + + + AY
Sbjct: 1 LMTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYA 41
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 24.1 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 95 DAYEALGLTRGSHHEENIVRKAY 117
D YE LG+++ + E +RKAY
Sbjct: 4 DYYEILGVSKTAEERE--IRKAY 24
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 25.1 bits (56), Expect = 7.8
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 7/54 (12%)
Query: 72 LLKDVLEAWKAEVERKPPEMSVDDAYEALGLT-------RGSHHEENIVRKAYY 118
+ + W+ EM+ + A+ + R Y
Sbjct: 10 FQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNY 63
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix,
oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis}
SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Length = 209
Score = 24.9 bits (54), Expect = 8.4
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 52 LRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALG 101
+ P+ + L+ E + E+ + +A+G
Sbjct: 60 YKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPYEAGNKAIG 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.442
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,424
Number of extensions: 108770
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 43
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)