RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3080
         (118 letters)



>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
           {Simian virus 40, Sv40 [TaxId: 10633]}
          Length = 114

 Score = 28.2 bits (62), Expect = 0.13
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 95  DAYEALGLTRGSHHEENIVRKAYY 118
              + LGL R +     ++RKAY 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYL 32


>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
           {Murine polyomavirus [TaxId: 10634]}
          Length = 79

 Score = 26.9 bits (59), Expect = 0.25
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 95  DAYEALGLTRGSHHEENIVRKAYY 118
              E L L R    +   +++AY 
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYK 35


>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
           (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 94

 Score = 25.4 bits (55), Expect = 0.94
 Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 95  DAYEALGLTRGSHHEENIVRKAYY 118
           D Y  LG    ++  +  +++ Y 
Sbjct: 17  DWYSILGADPSANMSD--LKQKYQ 38


>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
           {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 24.6 bits (53), Expect = 1.9
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 95  DAYEALGLTRGSHHEENIVRKAYY 118
           D YE LG+++ +   E  +RKAY 
Sbjct: 4   DYYEILGVSKTAEERE--IRKAYK 25


>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 24.6 bits (53), Expect = 2.0
 Identities = 3/31 (9%), Positives = 7/31 (22%), Gaps = 2/31 (6%)

Query: 88  PPEMSVDDAYEALGLTRGSHHEENIVRKAYY 118
           P    + +    +         E   +K   
Sbjct: 10  PRGSILKEVTSVVEQAWKLPESE--RKKIIR 38


>d2dcya1 b.29.1.11 (A:1-185) Xylanase II {Bacillus subtilis [TaxId:
           1423]}
          Length = 185

 Score = 24.7 bits (54), Expect = 2.7
 Identities = 4/19 (21%), Positives = 12/19 (63%)

Query: 95  DAYEALGLTRGSHHEENIV 113
           +A+++ G+  GS+    ++
Sbjct: 151 NAWKSHGMNLGSNWAYQVM 169


>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid
           3/5-O-methyltransferase {Alfalfa (Medicago sativa)
           [TaxId: 3879]}
          Length = 243

 Score = 24.8 bits (53), Expect = 3.4
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 7   GKIAAHIADFTPRLRGNNRAVYQFCGIPAV--RYPQLEQEMFVNIFYLRHLCDTAKFPDW 64
           G +   I    P ++G N  +               +  +MFV+I     +       DW
Sbjct: 93  GAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDW 152

Query: 65  PINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHH 108
                +  LK+  EA     +    E  +  A ++   T+G  H
Sbjct: 153 SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVH 196


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
           {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 23.4 bits (50), Expect = 3.8
 Identities = 3/24 (12%), Positives = 7/24 (29%)

Query: 95  DAYEALGLTRGSHHEENIVRKAYY 118
           D +   GL      +   +   + 
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQ 25


>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score = 24.2 bits (52), Expect = 4.6
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 5   LIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLC 56
               I +  ++F P+LR     +YQ     + R+PQ       +  +LR + 
Sbjct: 141 FFHAIISSSSEFPPQLRSVCHCLYQVV---SQRFPQNSIGAVGSAMFLRFIN 189


>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
          {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 24.0 bits (52), Expect = 5.1
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 33 IPAVRYPQLEQEMFVNIF 50
          +P +R+   ++  F N F
Sbjct: 2  LPRLRHIWFDKAQFRNGF 19


>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 542

 Score = 23.5 bits (49), Expect = 9.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 19 RLRGNNRAVYQFCGIP 34
          RL+     V  F GIP
Sbjct: 21 RLKAPGGPVSAFLGIP 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 474,164
Number of extensions: 20410
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 20
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.8 bits)