Query psy3081
Match_columns 327
No_of_seqs 151 out of 1160
Neff 8.7
Searched_HMMs 46136
Date Sat Aug 17 01:12:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05326 potassium/proton anti 100.0 7.5E-38 1.6E-42 309.4 28.0 310 3-324 33-350 (562)
2 COG0475 KefB Kef-type K+ trans 100.0 1.8E-34 4E-39 272.8 27.1 307 3-324 33-349 (397)
3 COG0025 NhaP NhaP-type Na+/H+ 100.0 4.3E-34 9.2E-39 272.4 27.6 313 3-325 33-365 (429)
4 PLN03159 cation/H(+) antiporte 100.0 1.3E-33 2.8E-38 288.0 28.4 308 3-324 70-400 (832)
5 PRK03562 glutathione-regulated 100.0 2.3E-33 5.1E-38 279.1 27.7 306 3-323 32-343 (621)
6 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 3.3E-33 7.2E-38 275.7 28.1 306 4-320 42-374 (810)
7 PRK03659 glutathione-regulated 100.0 1E-32 2.2E-37 273.9 27.6 302 3-323 32-340 (601)
8 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3.5E-32 7.5E-37 266.0 26.4 308 4-324 26-362 (525)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 8E-36 1.7E-40 282.4 -1.9 308 3-324 23-342 (380)
10 TIGR00840 b_cpa1 sodium/hydrog 100.0 1.6E-31 3.5E-36 261.5 25.9 307 4-325 39-376 (559)
11 PRK10669 putative cation:proto 100.0 4.3E-31 9.3E-36 261.4 28.1 307 3-324 33-352 (558)
12 TIGR00932 2a37 transporter, mo 100.0 1.9E-30 4.2E-35 234.9 25.0 250 3-265 19-273 (273)
13 COG3263 NhaP-type Na+/H+ and K 100.0 2.8E-30 6E-35 235.2 20.8 307 3-324 34-348 (574)
14 KOG1965|consensus 99.9 2.4E-23 5.1E-28 197.7 20.5 291 26-327 100-415 (575)
15 KOG4505|consensus 99.9 5.6E-23 1.2E-27 181.7 16.1 304 6-321 44-374 (467)
16 COG4651 RosB Kef-type K+ trans 99.8 1.1E-19 2.3E-24 159.2 17.4 304 3-320 33-348 (408)
17 KOG1650|consensus 99.8 8.3E-20 1.8E-24 184.6 17.0 306 4-322 51-383 (769)
18 KOG1966|consensus 99.8 3.3E-19 7.1E-24 169.0 6.3 308 5-323 73-406 (670)
19 PRK14853 nhaA pH-dependent sod 99.5 4.5E-12 9.7E-17 119.0 24.2 254 25-309 64-343 (423)
20 TIGR00773 NhaA Na+/H+ antiport 99.3 3.1E-10 6.6E-15 104.8 17.6 252 25-309 54-324 (373)
21 PRK09560 nhaA pH-dependent sod 98.6 1.4E-06 2.9E-11 81.0 16.0 252 25-309 61-333 (389)
22 PF06965 Na_H_antiport_1: Na+/ 98.6 1.5E-07 3.2E-12 87.1 8.2 256 23-309 55-331 (378)
23 PRK14854 nhaA pH-dependent sod 98.3 2.6E-05 5.7E-10 72.2 16.3 250 25-309 58-328 (383)
24 COG3004 NhaA Na+/H+ antiporter 98.3 3.2E-05 6.9E-10 69.5 15.8 252 26-309 65-334 (390)
25 PRK14855 nhaA pH-dependent sod 98.3 2.7E-05 5.7E-10 73.3 15.5 249 25-309 65-363 (423)
26 PRK09561 nhaA pH-dependent sod 98.3 4.5E-05 9.7E-10 71.0 16.2 250 25-309 61-331 (388)
27 PRK14856 nhaA pH-dependent sod 98.3 5E-05 1.1E-09 71.8 16.5 252 25-309 70-378 (438)
28 PF03616 Glt_symporter: Sodium 97.6 0.076 1.6E-06 50.2 25.1 102 209-315 244-346 (368)
29 PF05684 DUF819: Protein of un 97.2 0.22 4.7E-06 47.3 23.1 80 245-326 265-344 (378)
30 COG0385 Predicted Na+-dependen 97.1 0.078 1.7E-06 48.6 18.3 163 6-177 18-186 (319)
31 TIGR00210 gltS sodium--glutama 97.0 0.31 6.8E-06 46.4 24.6 103 209-316 242-345 (398)
32 PF01758 SBF: Sodium Bile acid 96.8 0.086 1.9E-06 44.8 14.9 141 30-180 2-149 (187)
33 TIGR00832 acr3 arsenical-resis 96.4 0.75 1.6E-05 42.8 19.7 103 30-141 47-153 (328)
34 PF03956 DUF340: Membrane prot 96.3 0.0078 1.7E-07 51.3 5.6 88 5-93 3-95 (191)
35 PF13593 DUF4137: SBF-like CPA 95.9 0.81 1.8E-05 42.3 17.1 142 25-174 30-180 (313)
36 PF03601 Cons_hypoth698: Conse 95.9 1.4 3.1E-05 40.5 19.7 127 4-142 30-167 (305)
37 COG0798 ACR3 Arsenite efflux p 95.1 1.3 2.9E-05 40.8 15.0 132 5-145 22-165 (342)
38 TIGR00841 bass bile acid trans 95.0 2.8 6E-05 38.2 19.0 103 30-143 12-119 (286)
39 COG2431 Predicted membrane pro 94.4 0.1 2.3E-06 46.3 5.9 89 3-93 109-202 (297)
40 PRK12460 2-keto-3-deoxyglucona 94.1 0.27 5.8E-06 44.9 8.2 84 5-89 171-254 (312)
41 TIGR00698 conserved hypothetic 94.0 5.3 0.00011 37.3 23.6 128 5-144 36-175 (335)
42 COG0786 GltS Na+/glutamate sym 93.7 6.4 0.00014 37.2 21.7 104 202-309 235-342 (404)
43 PF03601 Cons_hypoth698: Conse 93.7 1.2 2.6E-05 40.9 11.8 114 194-314 6-123 (305)
44 PF06826 Asp-Al_Ex: Predicted 93.1 0.55 1.2E-05 39.3 7.8 78 7-84 30-115 (169)
45 TIGR01625 YidE_YbjL_dupl AspT/ 92.3 1.1 2.5E-05 36.7 8.6 93 5-99 26-130 (154)
46 COG2855 Predicted membrane pro 91.0 2.1 4.6E-05 39.5 9.7 97 211-314 36-132 (334)
47 TIGR00698 conserved hypothetic 90.3 5.4 0.00012 37.2 11.9 115 195-314 11-129 (335)
48 PF05145 AmoA: Putative ammoni 90.2 15 0.00033 33.9 23.2 118 191-320 157-276 (318)
49 PRK03659 glutathione-regulated 88.9 6.1 0.00013 40.0 12.1 90 7-97 244-335 (601)
50 PRK03562 glutathione-regulated 88.6 4.6 0.0001 41.0 11.0 116 190-314 9-124 (621)
51 PRK03818 putative transporter; 88.5 2.6 5.7E-05 42.1 9.0 78 6-84 36-121 (552)
52 PRK12460 2-keto-3-deoxyglucona 88.5 1.6 3.4E-05 40.0 6.8 83 218-310 172-254 (312)
53 TIGR03802 Asp_Ala_antiprt aspa 87.8 2.6 5.7E-05 42.2 8.5 82 6-91 41-127 (562)
54 PRK10669 putative cation:proto 87.7 7.7 0.00017 38.8 11.9 71 26-97 276-346 (558)
55 TIGR00932 2a37 transporter, mo 86.0 5.9 0.00013 35.5 9.2 105 201-314 7-112 (273)
56 PRK05326 potassium/proton anti 85.3 12 0.00026 37.6 11.8 111 198-315 18-129 (562)
57 COG0475 KefB Kef-type K+ trans 85.1 7.7 0.00017 37.1 9.9 115 191-314 11-128 (397)
58 TIGR00783 ccs citrate carrier 84.8 34 0.00074 32.0 21.2 61 27-88 26-86 (347)
59 TIGR00946 2a69 he Auxin Efflux 84.4 6.1 0.00013 36.5 8.7 95 8-105 189-288 (321)
60 TIGR03082 Gneg_AbrB_dup membra 84.4 21 0.00046 29.2 11.1 112 197-320 6-119 (156)
61 TIGR00844 c_cpa1 na(+)/h(+) an 82.1 17 0.00037 37.8 11.3 71 248-319 74-146 (810)
62 PRK04972 putative transporter; 81.8 6.4 0.00014 39.5 8.1 74 7-84 44-120 (558)
63 TIGR03802 Asp_Ala_antiprt aspa 81.7 6.9 0.00015 39.2 8.4 72 26-99 448-523 (562)
64 PRK04972 putative transporter; 80.6 7.9 0.00017 38.8 8.3 73 25-99 442-518 (558)
65 PF03812 KdgT: 2-keto-3-deoxyg 80.6 47 0.001 30.5 12.5 126 5-138 17-157 (314)
66 PF03390 2HCT: 2-hydroxycarbox 79.6 60 0.0013 31.2 20.7 61 27-88 95-155 (414)
67 COG2855 Predicted membrane pro 79.4 53 0.0012 30.5 21.4 97 3-104 40-146 (334)
68 TIGR00831 a_cpa1 Na+/H+ antipo 77.0 27 0.00058 34.8 10.8 108 202-319 14-122 (525)
69 KOG3826|consensus 77.0 2.2 4.8E-05 37.2 2.7 84 25-108 157-240 (252)
70 PRK03818 putative transporter; 76.2 11 0.00024 37.7 7.9 92 6-99 406-509 (552)
71 COG2985 Predicted permease [Ge 76.0 9.2 0.0002 37.2 6.8 76 29-105 62-142 (544)
72 PLN03159 cation/H(+) antiporte 75.4 38 0.00081 35.8 11.8 71 26-97 322-394 (832)
73 PF03956 DUF340: Membrane prot 75.1 8.2 0.00018 32.9 5.8 87 217-312 3-93 (191)
74 PRK09903 putative transporter 69.7 26 0.00055 32.2 8.2 79 23-105 199-278 (314)
75 KOG2718|consensus 67.3 76 0.0017 30.0 10.7 107 27-141 114-223 (371)
76 PF03812 KdgT: 2-keto-3-deoxyg 67.1 8.3 0.00018 35.3 4.2 51 210-269 166-219 (314)
77 TIGR03082 Gneg_AbrB_dup membra 66.4 42 0.00091 27.4 8.0 65 23-87 44-110 (156)
78 COG3493 CitS Na+/citrate sympo 61.7 1.5E+02 0.0032 28.2 19.2 59 29-88 114-172 (438)
79 TIGR00793 kdgT 2-keto-3-deoxyg 59.3 12 0.00025 34.3 3.6 42 219-269 178-219 (314)
80 PF05982 DUF897: Domain of unk 58.1 31 0.00067 31.9 6.2 95 8-106 188-287 (327)
81 COG2985 Predicted permease [Ge 57.4 44 0.00095 32.7 7.3 73 25-99 427-503 (544)
82 TIGR00793 kdgT 2-keto-3-deoxyg 56.0 20 0.00043 32.8 4.6 61 5-68 176-239 (314)
83 PF00375 SDF: Sodium:dicarboxy 52.3 1.2E+02 0.0026 28.8 9.6 92 28-122 184-283 (390)
84 TIGR00808 malonate_madM malona 52.1 28 0.0006 29.9 4.5 56 26-86 83-138 (254)
85 PF09930 DUF2162: Predicted tr 51.9 1.5E+02 0.0034 25.9 9.3 89 7-96 46-145 (224)
86 PF03390 2HCT: 2-hydroxycarbox 50.7 68 0.0015 30.8 7.4 71 25-95 303-375 (414)
87 COG3493 CitS Na+/citrate sympo 50.7 94 0.002 29.5 8.1 70 25-94 322-393 (438)
88 TIGR00210 gltS sodium--glutama 50.5 1.9E+02 0.0041 27.7 10.5 114 23-140 274-393 (398)
89 COG0679 Predicted permeases [G 50.3 1.8E+02 0.004 26.6 10.2 130 7-141 174-307 (311)
90 TIGR00783 ccs citrate carrier 46.1 1.1E+02 0.0025 28.6 8.0 69 26-94 237-307 (347)
91 PF03616 Glt_symporter: Sodium 42.9 1.1E+02 0.0025 28.8 7.7 84 23-108 276-363 (368)
92 PF00999 Na_H_Exchanger: Sodiu 41.7 4.7 0.0001 38.0 -1.8 103 205-315 15-121 (380)
93 PF05145 AmoA: Putative ammoni 41.6 1.1E+02 0.0025 28.2 7.4 63 25-87 203-267 (318)
94 KOG1650|consensus 40.2 3.9E+02 0.0085 28.1 11.7 70 26-97 310-379 (769)
95 KOG3826|consensus 35.0 33 0.00072 30.1 2.5 138 32-183 99-236 (252)
96 PF06912 DUF1275: Protein of u 34.2 2.9E+02 0.0063 23.4 11.1 30 117-146 2-32 (209)
97 PF05982 DUF897: Domain of unk 33.9 3.9E+02 0.0085 24.8 12.1 128 4-136 3-134 (327)
98 PF06181 DUF989: Protein of un 30.4 4.3E+02 0.0092 24.2 14.0 38 251-288 231-268 (300)
99 COG1346 LrgB Putative effector 30.3 3.8E+02 0.0082 23.6 9.0 25 42-66 80-104 (230)
100 COG0765 HisM ABC-type amino ac 26.9 3.5E+02 0.0076 23.6 7.6 22 305-326 109-130 (222)
101 PF06295 DUF1043: Protein of u 26.6 64 0.0014 25.5 2.7 20 162-181 3-22 (128)
102 PRK10457 hypothetical protein; 26.5 2.5E+02 0.0055 20.3 7.8 19 164-182 6-24 (82)
103 COG0025 NhaP NhaP-type Na+/H+ 25.9 6.1E+02 0.013 24.5 10.7 68 250-318 64-133 (429)
104 TIGR00946 2a69 he Auxin Efflux 25.3 4.9E+02 0.011 23.7 8.8 101 214-321 183-285 (321)
105 PF13593 DUF4137: SBF-like CPA 24.4 3.3E+02 0.007 25.1 7.3 50 216-269 4-53 (313)
106 KOG3787|consensus 23.0 97 0.0021 30.1 3.6 38 84-123 304-341 (507)
107 PRK13628 serine/threonine tran 22.5 6.9E+02 0.015 23.9 11.5 107 26-134 188-303 (402)
108 COG5336 Uncharacterized protei 21.9 3.8E+02 0.0082 20.7 6.1 25 156-180 47-71 (116)
109 PRK11677 hypothetical protein; 21.2 1.1E+02 0.0025 24.4 3.2 20 161-180 6-25 (134)
110 COG1301 GltP Na+/H+-dicarboxyl 20.9 6.7E+02 0.015 24.2 8.8 91 29-121 192-289 (415)
111 PF03547 Mem_trans: Membrane t 20.8 6.7E+02 0.015 23.3 9.0 69 237-307 25-95 (385)
No 1
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=7.5e-38 Score=309.43 Aligned_cols=310 Identities=21% Similarity=0.228 Sum_probs=251.6
Q ss_pred chhhhhhhheecccccccc--c---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 3 KHLFSLFGAFIGGNSEMVL--D---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~--~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
+..|+++|+++||++++.. + ..+.++++++++++|.+|+|+|++++||+++++..+++.++++++...+..++++
T Consensus 33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l 112 (562)
T PRK05326 33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL 112 (562)
T ss_pred HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998732 2 3468999999999999999999999999999999999999999988878888899
Q ss_pred cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCc--hHHHHHH
Q psy3081 78 LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSED--SLLYNIV 155 (327)
Q Consensus 78 ~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~--~~~~~~~ 155 (327)
++++|..++++|+++++|||+++.++++|.+ ...++|+++++++||.+||.++++++.++.++..++. .....+.
T Consensus 113 ~g~~~~~alllgai~s~Td~a~v~~iL~~~~---l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~ 189 (562)
T PRK05326 113 LGLDWLEGLLLGAIVGSTDAAAVFSLLRGKG---LNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLL 189 (562)
T ss_pred hcCCHHHHHHHhhhhccCchHHHHHHHhccC---CCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999999999987754 2246799999999999999999999988887665433 2222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081 156 LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN 235 (327)
Q Consensus 156 ~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~ 235 (327)
.+..++..++++|.+.+++..++.||.+...++.+..++++.++.++..+|.+ |.|+++|++++|++++|...
T Consensus 190 ~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~~l~~~~~a~~l--g~Sg~la~~iaGl~l~n~~~----- 262 (562)
T PRK05326 190 LFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLIFALTAAL--GGSGFLAVYLAGLVLGNRPI----- 262 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHhCCcc-----
Confidence 56777888888898889888888777643223345667777888899999987 77999999999999987321
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081 236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAI-IVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~-~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
+.++++++..+.+..+++|+||+++|+++|++.+.. ..+..++ .++..+++|+++++++.+..+++|||+.+++.. .
T Consensus 263 ~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g 340 (562)
T PRK05326 263 RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-G 340 (562)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-c
Confidence 123345555566777899999999999999988743 3333333 344567899999999999999999999999664 4
Q ss_pred cchhhhhhcc
Q psy3081 315 AKASVQLFLY 324 (327)
Q Consensus 315 pr~~v~~al~ 324 (327)
+||+++.++|
T Consensus 341 ~RG~v~i~lA 350 (562)
T PRK05326 341 LRGAVPIVLA 350 (562)
T ss_pred chhHHHHHHH
Confidence 8999998876
No 2
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=272.77 Aligned_cols=307 Identities=19% Similarity=0.173 Sum_probs=234.1
Q ss_pred chhhhhhhheecccccc-cc---ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhh-hhhhchhHHHHHHHHHHHHHHH-
Q psy3081 3 KHLFSLFGAFIGGNSEM-VL---DEFSSYRKMALVVILTRAGLDLDPPALRRLWST-VLKLGLVPWAVEAISVVIATHY- 76 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~-~~---~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~- 76 (327)
+..|+++|+++||.+.. .. +..+.++|+|++++||.+|+|.|++++||++|+ ....+..++..+..... ...+
T Consensus 33 vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 111 (397)
T COG0475 33 VLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGL-LLLLG 111 (397)
T ss_pred HHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHH-HHHHH
Confidence 46799999999995543 22 234579999999999999999999999999999 66555666665543322 2222
Q ss_pred hcCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy3081 77 FLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVL 156 (327)
Q Consensus 77 ~~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~ 156 (327)
.+++++..++++|.+++.||.+++.++++|+++. ++|.+|.+++.+.+||+.++++++++..+.+++......+..
T Consensus 112 ~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~----~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~ 187 (397)
T COG0475 112 ILGLSLIAALFLGAALALSSTAIVLKILMELGLL----KTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILG 187 (397)
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHH
Confidence 4899999999999999999999999999987654 379999999999999999999999999887665432222222
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhcCCCCC-CccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCC
Q psy3081 157 GPSSLIIGLAFGIIWG-SLAKVVPEKGDP-FVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGW 234 (327)
Q Consensus 157 ~~~~i~~g~~~g~~~g-~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~ 234 (327)
....+..-..+-...+ |+.++..|+..+ +.++.....++..++...+.+|.. +.|..+|+|++|.+++...
T Consensus 188 ~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~--gls~ilGAFlaGl~ls~~~----- 260 (397)
T COG0475 188 LLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELL--GLSMILGAFLAGLLLSESE----- 260 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--ChhHHHHHHHHHHHhcccc-----
Confidence 2222221111112223 555666665543 223445566677888889999998 5579999999998887421
Q ss_pred CCCC-chHHhHHHHHHH-HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhc
Q psy3081 235 NIED-NPVATAFEIFWM-IFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFS 312 (327)
Q Consensus 235 ~~~~-~~l~~~~~~~~~-~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~ 312 (327)
.+ ++++++++++.+ ++.|+||+.+|+++|++.+.. .+...+......+++|.+++++.++..|+++|++...|.+
T Consensus 261 --~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~-~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~ 337 (397)
T COG0475 261 --YRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE-NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLL 337 (397)
T ss_pred --cchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhh
Confidence 23 689999999998 999999999999999998844 3445677778889999999999999999999999999888
Q ss_pred cccchhhhhhcc
Q psy3081 313 WMAKASVQLFLY 324 (327)
Q Consensus 313 ~~pr~~v~~al~ 324 (327)
+.++||++.++.
T Consensus 338 ~~~~ge~~~v~~ 349 (397)
T COG0475 338 LRQGGEFAFVLA 349 (397)
T ss_pred hhhhhHHHHHHH
Confidence 888888886543
No 3
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-34 Score=272.38 Aligned_cols=313 Identities=24% Similarity=0.369 Sum_probs=250.0
Q ss_pred chhhhhhhheeccccccccc-----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD-----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~-----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
.+.+++.|++.||.+++..+ +.+.+..+.++.++|..|+|+|.+++||+++++..+++.+++++....++..|++
T Consensus 33 i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l 112 (429)
T COG0025 33 IPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL 112 (429)
T ss_pred hHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999998877322 3446669999999999999999999999999999999999999999999998887
Q ss_pred c-CCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHHHH
Q psy3081 78 L-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLYNI 154 (327)
Q Consensus 78 ~-~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~~~ 154 (327)
+ ++|+..|+++|++++||||+++.|+.++ .+.|||+.+++.+||.+||..+++.+.+..+...+++. ..+..
T Consensus 113 ~~~i~~~~a~l~gAilspTDPv~v~~i~~~-----~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~ 187 (429)
T COG0025 113 LPGIPLAAAFLLGAILSPTDPVAVSPIFKR-----VRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWAL 187 (429)
T ss_pred hCChhHHHHHHHhHHhcCCCchhhHHHHhc-----CCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHH
Confidence 6 7889999999999999999999998755 44788999999999999999999999999887764332 24556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcc
Q psy3081 155 VLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSK 231 (327)
Q Consensus 155 ~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~ 231 (327)
..+...+.+|+++|.+.|++..|+.|+.+++ +...+....+..++..+..+|.+ |.||++|++++|++.++. .+
T Consensus 188 ~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l--~~SGilAvvvaG~~~~~~-~~ 264 (429)
T COG0025 188 LLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL--GVSGILAVVVAGLVLGEA-VR 264 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHh--CcchHHHHHHHHHHHhhh-hh
Confidence 6678888888888888888877777665532 23456677788899999999998 789999999999988721 11
Q ss_pred cCCCCCC-chHHh-HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCh
Q psy3081 232 QGWNIED-NPVAT-AFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS------SLNL 303 (327)
Q Consensus 232 ~~~~~~~-~~l~~-~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~------~~~~ 303 (327)
.+.+..+ ++..+ .-|.++.+++.+.|++.|.+++....+...++..++.+...++.|++++++..+.+ ..+|
T Consensus 265 ~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~ 344 (429)
T COG0025 265 INLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPW 344 (429)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCH
Confidence 1101111 11222 22455568999999999999999887443356666777788999999999998874 3799
Q ss_pred hhHHHHhhccc-cchhhhhhccC
Q psy3081 304 KEKLFVAFSWM-AKASVQLFLYL 325 (327)
Q Consensus 304 ~e~~~~~~~~~-pr~~v~~al~~ 325 (327)
||+.++ +|. |||.+++|++.
T Consensus 345 ~~~~~l--~w~G~RG~vsla~al 365 (429)
T COG0025 345 RERLFL--SWAGPRGVVSLALAL 365 (429)
T ss_pred HHHHHH--hhcccccHHHHHHHH
Confidence 999999 555 89999988764
No 4
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.3e-33 Score=287.98 Aligned_cols=308 Identities=13% Similarity=0.176 Sum_probs=230.5
Q ss_pred chhhhhhhheeccccccccc-------------cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHH
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD-------------EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAIS 69 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~-------------~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~ 69 (327)
+..|+++|+++||+++|..+ ..+.++++|++++||.+|+|+|++.+||++|+++.+++.++++++.+
T Consensus 70 ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~l 149 (832)
T PLN03159 70 VISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCI 149 (832)
T ss_pred hHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 45799999999999988432 35689999999999999999999999999999999999999999765
Q ss_pred HHHHHHHhcCCc------HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy3081 70 VVIATHYFLNLP------WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSF 143 (327)
Q Consensus 70 ~~~~~~~~~~~~------~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~ 143 (327)
.....++ ++.. ...++++|.+++.||.+++.++++|++..+ ++.+++.++.+.+||+++|++++++.++
T Consensus 150 g~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~----s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 150 GLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLIN----TELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred HHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4434333 2321 335789999999999999999999987654 7999999999999999999999988776
Q ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Q psy3081 144 MFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF--VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIAS 221 (327)
Q Consensus 144 ~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~ 221 (327)
...+......+...+..+...++..++..++.+|+.|+..+. ..+....+++...+.+.+++|.+|+ +..+|+|++
T Consensus 225 ~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl--~~ilGAFla 302 (832)
T PLN03159 225 AENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGT--HSVFGAFVF 302 (832)
T ss_pred HhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCc--cHHHHHHHH
Confidence 554332211121111112222222223344555665554321 1233445555566777888999865 589998888
Q ss_pred HHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy3081 222 AFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELDP-QIVSIAAIIVIGGVVTRILITVLVAVGS 299 (327)
Q Consensus 222 g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~-~~~~~~~~~~~~~~i~r~~~~~l~~~~~ 299 (327)
|+++.. . +..+++.++++.+. .++.|+||+.+|+++|+..+.. ..+...+++++.++++|++++++.++..
T Consensus 303 Gl~lp~----~---~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~ 375 (832)
T PLN03159 303 GLVIPN----G---PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFY 375 (832)
T ss_pred hhccCC----c---chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887652 1 13456788888874 6999999999999999987743 2344556667778899999999999999
Q ss_pred CCChhhHHHHhhccccchhhhhhcc
Q psy3081 300 SLNLKEKLFVAFSWMAKASVQLFLY 324 (327)
Q Consensus 300 ~~~~~e~~~~~~~~~pr~~v~~al~ 324 (327)
++++||++.+|+.|.+||+++..++
T Consensus 376 g~~~~eal~lG~lm~~kG~~~Lii~ 400 (832)
T PLN03159 376 TMPFREGITLGFLMNTKGLVEMIVL 400 (832)
T ss_pred CCCHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999999999999987553
No 5
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.3e-33 Score=279.08 Aligned_cols=306 Identities=16% Similarity=0.143 Sum_probs=231.3
Q ss_pred chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
+..|+++|+++||++++..+ ..+.++|+|++++||.+|+|+|++++++.+++++.++..++.+++...+ ...+.+|
T Consensus 32 vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~-~~~~~~g 110 (621)
T PRK03562 32 VLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLG-LFCMLLG 110 (621)
T ss_pred HHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence 56899999999999988543 3568999999999999999999999999999999999998888866544 4456789
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch-HHHHHHHHH
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS-LLYNIVLGP 158 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~-~~~~~~~~~ 158 (327)
++|..++++|.+++.||+++++++++|.+.. +++.++..++.+.+||+.++++++++..+...+.. .....+...
T Consensus 111 ~~~~~al~ig~~la~SStaiv~~~L~e~~~l----~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~ 186 (621)
T PRK03562 111 LRWQVALLIGLGLALSSTAIAMQAMNERNLM----VTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA 186 (621)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH
Confidence 9999999999999999999999998886544 36999999999999999999998887655432111 111111111
Q ss_pred HHHHHHHHHHHHH-HHHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCC
Q psy3081 159 SSLIIGLAFGIIW-GSLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNI 236 (327)
Q Consensus 159 ~~i~~g~~~g~~~-g~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~ 236 (327)
...+..++..++. .|+.+++.++..+. ..+.....++.+++.++.++|.+| .|..+|+|++|+++++. +
T Consensus 187 ~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~G--ls~~lGAFlAGl~l~~~-------~ 257 (621)
T PRK03562 187 LKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVG--LSMALGAFLAGVLLASS-------E 257 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHhcCC-------c
Confidence 1111112222222 23444444433211 123334444556666777889884 57999999999988741 2
Q ss_pred CCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccc
Q psy3081 237 EDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAK 316 (327)
Q Consensus 237 ~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr 316 (327)
.++++++.++++.+++.|+||+.+|+++|+..+.. .++..+..++..+++|.++++..++..|++++|+..+|+.+.+|
T Consensus 258 ~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~-~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~ 336 (621)
T PRK03562 258 YRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE-NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQG 336 (621)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhcc
Confidence 46778888999989999999999999999988733 34445555666789999999999999999999999999999999
Q ss_pred hhhhhhc
Q psy3081 317 ASVQLFL 323 (327)
Q Consensus 317 ~~v~~al 323 (327)
|+.+..+
T Consensus 337 Gef~~vl 343 (621)
T PRK03562 337 GEFAFVV 343 (621)
T ss_pred ccHHHHH
Confidence 9987554
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=3.3e-33 Score=275.72 Aligned_cols=306 Identities=12% Similarity=0.125 Sum_probs=227.0
Q ss_pred hhhhhhhheeccccccccccHH---------HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHH
Q psy3081 4 HLFSLFGAFIGGNSEMVLDEFS---------SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIAT 74 (327)
Q Consensus 4 ~~~ll~GillGp~~~~~~~~~~---------~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 74 (327)
++|+++|+++||++++.++..+ .+.++++++++|.+|+++|.+.++|+|+.+.++...++.++..++++++
T Consensus 42 ~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a 121 (810)
T TIGR00844 42 MVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFV 121 (810)
T ss_pred HHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999887554221 3889999999999999999999999999999999999999988888888
Q ss_pred HHh-cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC--Cc--h
Q psy3081 75 HYF-LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS--ED--S 149 (327)
Q Consensus 75 ~~~-~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~--~~--~ 149 (327)
+++ .|++|..|+++|++++||||+.+.++++.-. ....|+++++++.+||++||.++.+++.+.+.+... .+ .
T Consensus 122 ~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~--~~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~ 199 (810)
T TIGR00844 122 WILVPGLNFPASLLMGACITATDPVLAQSVVSGTF--AQKVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEI 199 (810)
T ss_pred HHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccc--cccCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccc
Confidence 887 5999999999999999999988777764211 123678999999999999999998877666544431 11 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy3081 150 -LLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVS 225 (327)
Q Consensus 150 -~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~ 225 (327)
..|....+++.+++|+++|+++|++..++.++.+++ ..+....+.+++++.++..++.+ |+|+++|+|++|+++
T Consensus 200 ~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lL--ggSGfLAVFVAGl~~ 277 (810)
T TIGR00844 200 VKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSML--GVDDLLVSFFAGTAF 277 (810)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHH
Confidence 123345577788888888888888777766544321 11122334455677778888876 889999999999999
Q ss_pred hhhhcccCCCCCCchHHhHH-HHHHHHHHHHHHHHhcccccccccch-----hhHHHHHHHHHHHHHHHHHHHHHHH--h
Q psy3081 226 SYSWSKQGWNIEDNPVATAF-EIFWMIFEPILFGLTGTQFKLSELDP-----QIVSIAAIIVIGGVVTRILITVLVA--V 297 (327)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~plfF~~~G~~i~~~~l~~-----~~~~~~~~~~~~~~i~r~~~~~l~~--~ 297 (327)
++..... ++.-++.+ +.+..+++..+|+++|+.+++..+.. ..|...++.+++.++.|+..+++.. .
T Consensus 278 gn~~~~~-----~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li 352 (810)
T TIGR00844 278 AWDGWFA-----QKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLI 352 (810)
T ss_pred hcccchh-----hhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8632101 11111223 33345789999999999998876632 2333445556667789988888763 3
Q ss_pred CCCCChhhHHHHhhccc-cchhhh
Q psy3081 298 GSSLNLKEKLFVAFSWM-AKASVQ 320 (327)
Q Consensus 298 ~~~~~~~e~~~~~~~~~-pr~~v~ 320 (327)
....+|||++++ +|. |||..+
T Consensus 353 ~~~~s~rErlFi--gWFGpRGIGS 374 (810)
T TIGR00844 353 PDIKSWREAMFI--GHFGPIGVGA 374 (810)
T ss_pred ccCCCHHHHHHh--eeeccccHHH
Confidence 345799999999 788 687765
No 7
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1e-32 Score=273.95 Aligned_cols=302 Identities=19% Similarity=0.139 Sum_probs=230.1
Q ss_pred chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
+..|+++|+++||++++..+ ..+.++|+|++++||.+|+|+|++++++.++++..++..++.++..+.+.. .+.+|
T Consensus 32 ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~-~~~~g 110 (601)
T PRK03659 32 VLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGL-LMLTD 110 (601)
T ss_pred HHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 46799999999999988543 356899999999999999999999999999999999999999887665544 44579
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHHHHHHH
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLYNIVLG 157 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~~~~~~ 157 (327)
++|..++++|.+++.||++++.++++|.+.. +++.|++.++...+||+.+++++.+...+...+.. .+.....
T Consensus 111 ~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~----~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~- 185 (601)
T PRK03659 111 FSWQAAVVGGIGLAMSSTAMALQLMREKGMN----RSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGM- 185 (601)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH-
Confidence 9999999999999999999999999886654 36899999999999999999888877655433222 1111111
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081 158 PSSLIIGLAFGIIWG-SLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN 235 (327)
Q Consensus 158 ~~~i~~g~~~g~~~g-~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~ 235 (327)
.+. .++..+..+ ++.+++.++..+. ..+.....++..++.+...+|.+ +.|..+|+|++|+++++.
T Consensus 186 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~--Gls~~LGAFlaGl~l~~s------- 253 (601)
T PRK03659 186 --KVL-AFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDAL--GLSMALGTFIAGVLLAES------- 253 (601)
T ss_pred --HHH-HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHhcCC-------
Confidence 111 111111222 3444444433211 12333444444556666778887 557999999999998751
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081 236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMA 315 (327)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~p 315 (327)
+.+++++++++++.+++.|+||+.+|+++|+..+.. .++..+.+++..+++|.+++++.++..|+++||++.+|..+.|
T Consensus 254 ~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~-~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~ 332 (601)
T PRK03659 254 EYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT-HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQ 332 (601)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 245677888999989999999999999999987733 3455556667778999999999999999999999999999999
Q ss_pred chhhhhhc
Q psy3081 316 KASVQLFL 323 (327)
Q Consensus 316 r~~v~~al 323 (327)
||+++..+
T Consensus 333 ~Gef~~vl 340 (601)
T PRK03659 333 GGEFAFVL 340 (601)
T ss_pred cccHHHHH
Confidence 99998655
No 8
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=3.5e-32 Score=266.03 Aligned_cols=308 Identities=17% Similarity=0.185 Sum_probs=228.7
Q ss_pred hhhhhhhheecccccc-cc-ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCc
Q psy3081 4 HLFSLFGAFIGGNSEM-VL-DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLP 81 (327)
Q Consensus 4 ~~~ll~GillGp~~~~-~~-~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (327)
..++++|+++||...+ .. .+.+.+..+++.+++|.+|+|+|++++||+++++..+++.++++++..++...++.+++|
T Consensus 26 v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~ 105 (525)
T TIGR00831 26 IALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGIP 105 (525)
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999986443 22 234566779999999999999999999999999999999999999988888888888999
Q ss_pred HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC-Cc-hHHHHHHHHHH
Q psy3081 82 WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS-ED-SLLYNIVLGPS 159 (327)
Q Consensus 82 ~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~-~~-~~~~~~~~~~~ 159 (327)
|..|+++|+++++|||+++.+++++. +.|+|+.+++.+||.+||..+++++.+..++..+ +. +.......+..
T Consensus 106 ~~~alllGails~TDpvav~~il~~~-----~~p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~ 180 (525)
T TIGR00831 106 LALALILGAVLSPTDAVAVLGTFKSI-----RAPKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAV 180 (525)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcC-----CCCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999999999999999999987653 3567999999999999999999999998877753 22 22233445666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCc
Q psy3081 160 SLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDN 239 (327)
Q Consensus 160 ~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~ 239 (327)
...+|+++|.++||+..++.|+..+ ....+..++++.++.+|..+|.+ |.||++|++++|+++++..++.. .++
T Consensus 181 ~~~~gi~vG~~~g~~~~~l~~~~~~-~~~~~~~l~l~~~~~~y~lAe~l--g~SgilAvv~aGl~l~~~~~~~~---~~~ 254 (525)
T TIGR00831 181 VCVGGIAAGLAVGYLAYRLLRAKID-DPLVEIALTILAPFAGFLLAERF--HFSGVIAVVAAGLILTNYGRDFS---MSP 254 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcccccccc---CCH
Confidence 7788888998888887776644322 23345667777889999999997 88999999999999997543211 222
Q ss_pred hHHhHHHHHH----HHHHHHHHHHhcccccccccc--h-h--hH---HH-----HHHHHHHHHHHHHHHHHHHH------
Q psy3081 240 PVATAFEIFW----MIFEPILFGLTGTQFKLSELD--P-Q--IV---SI-----AAIIVIGGVVTRILITVLVA------ 296 (327)
Q Consensus 240 ~l~~~~~~~~----~~~~plfF~~~G~~i~~~~l~--~-~--~~---~~-----~~~~~~~~~i~r~~~~~l~~------ 296 (327)
+..+..+.+| .++++++|+++|++++....+ . . .+ .. .+++.......|++.++...
T Consensus 255 ~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~ 334 (525)
T TIGR00831 255 TTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLK 334 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223334444 478999999999998752111 0 0 00 01 12222334456765544331
Q ss_pred -hCCCCChhhHHHHhhccc-cchhhhhhcc
Q psy3081 297 -VGSSLNLKEKLFVAFSWM-AKASVQLFLY 324 (327)
Q Consensus 297 -~~~~~~~~e~~~~~~~~~-pr~~v~~al~ 324 (327)
...+.+|||+.++ +|. +||.|+.|+|
T Consensus 335 ~~~~~~~~r~~~v~--~w~G~RG~vslA~a 362 (525)
T TIGR00831 335 KKPMEFGTRWKHVV--SWAGLRGAIPLALA 362 (525)
T ss_pred cccCCCChhhHHHh--eeccchHHHHHHHH
Confidence 1235789999999 555 5999998876
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=8e-36 Score=282.42 Aligned_cols=308 Identities=26% Similarity=0.417 Sum_probs=75.3
Q ss_pred chhhhhhhheecccccccc----ccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH--
Q psy3081 3 KHLFSLFGAFIGGNSEMVL----DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY-- 76 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~----~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 76 (327)
...|+++|+++||.+++.. +..+.++++++.+++|.+|+|+|.+++||++++....++.++..+....+...++
T Consensus 23 ~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (380)
T PF00999_consen 23 IIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFL 102 (380)
T ss_dssp -------------------------S-SSHHHHS--SSHHHHTTGGGG--------------------------------
T ss_pred HHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHHHhh
Confidence 4679999999999988732 3456899999999999999999999999999999999999999997765666664
Q ss_pred -hcCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCC-chH-HHH
Q psy3081 77 -FLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE-DSL-LYN 153 (327)
Q Consensus 77 -~~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~-~~~-~~~ 153 (327)
..|+++..++++|.++++|||+++.++++|.+. .+++.++++.+|+.+||..+++.+.+..+..+.+ ... .+.
T Consensus 103 ~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~----~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (380)
T PF00999_consen 103 FILGLSWAEALLLGAILSATSPAIVSPVLKELGL----LPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSLGQL 178 (380)
T ss_dssp -----------TTHHHHTT--HHHHHHHH-HHHT-----SSTTHHHHTTTTTTTTTTTTTTT------------------
T ss_pred ccchhhhHHHhhhHHhhhcccccchhhhhhhhhc----ccccccchhhhhchhhccchhhhhhhhhhhhcccccccccch
Confidence 578999999999999999999999999876543 3479999999999999999999999888766221 111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccC
Q psy3081 154 IVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQG 233 (327)
Q Consensus 154 ~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~ 233 (327)
...+...+..+.+.|...+|+.++..|+.++ .++.+...+++..+..+..+|.+ |.|+.++++++|+.+++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~a~~~--g~s~~l~af~~Gl~~~~~~---- 251 (380)
T PF00999_consen 179 LLSFLWIILIGIVIGLLFGWLLRRLIRRASP-SSEIFILLVLALILLLYGLAEIL--GLSGILGAFIAGLILSNSP---- 251 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchhhhhhhheeeecccchHHHHhhhhccc-cchhhHHHHHHHHhhhccccccc--cccccceeeeeehcccccc----
Confidence 3334555566666666667776666665421 23455666677788888999987 7789999999999988321
Q ss_pred CCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHh
Q psy3081 234 WNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELD--PQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVA 310 (327)
Q Consensus 234 ~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~--~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~ 310 (327)
.++++++++++++ .++.|+||+.+|+++|.+.+. .+.+...+.+.+..+++|.+++++..+..+.++||+..++
T Consensus 252 ---~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 328 (380)
T PF00999_consen 252 ---FAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIG 328 (380)
T ss_dssp --------------------------------------------------------------------------HHHHTT
T ss_pred ---ccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHH
Confidence 3445777888998 799999999999999998873 5556666666777779999999999999999999999999
Q ss_pred hccccchhhhhhcc
Q psy3081 311 FSWMAKASVQLFLY 324 (327)
Q Consensus 311 ~~~~pr~~v~~al~ 324 (327)
.++.|||+++.+++
T Consensus 329 ~~~~~~g~~~l~la 342 (380)
T PF00999_consen 329 LGMLPRGEVSLALA 342 (380)
T ss_dssp TTSS--HHHHHHHH
T ss_pred HhhcCccHHHHHHH
Confidence 99999999998876
No 10
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=1.6e-31 Score=261.51 Aligned_cols=307 Identities=16% Similarity=0.188 Sum_probs=231.4
Q ss_pred hhhhhhhheecccccc-----ccc-cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 4 HLFSLFGAFIGGNSEM-----VLD-EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 4 ~~~ll~GillGp~~~~-----~~~-~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
.+.++.|+++|+.... ..+ +.+.+-.+.+..++|++|+++|.+.++|+++++..++..+++++++.++...++.
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999985322 111 3457777899999999999999999999999999999999999998888877754
Q ss_pred --------cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC--C
Q psy3081 78 --------LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS--E 147 (327)
Q Consensus 78 --------~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~--~ 147 (327)
.++||..|+++|+++++|||+++.+++++. +.|+++.+++.+||.+||+++++++.+..++... +
T Consensus 119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~-----~v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~ 193 (559)
T TIGR00840 119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEY-----HVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADE 193 (559)
T ss_pred HhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhc-----CCCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCC
Confidence 256899999999999999999999987654 3567999999999999999999999988887642 1
Q ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy3081 148 DSLL----YNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAF 223 (327)
Q Consensus 148 ~~~~----~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~ 223 (327)
.... ..+..+....++|+++|.++|++..++.|+.+.. +..+..+++..++++|..+|.+ |.||++|++++|+
T Consensus 194 ~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~-~~~e~~l~l~~~yl~Y~lAE~l--~~SGiLAvv~aGl 270 (559)
T TIGR00840 194 PVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI-RQIEPLFVFLISYLSYLFAETL--HLSGILALIFCGI 270 (559)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHH
Confidence 1111 1223344455668889988888887777766532 3456777788899999999987 8999999999999
Q ss_pred HHhhhhcccCCCCCCchHHhHH----HHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--
Q psy3081 224 VSSYSWSKQGWNIEDNPVATAF----EIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV-- 297 (327)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~-- 297 (327)
++++..++ + .+++..+.. +.+..+.+.+.|+++|+++....... .+...+..++..++.|+++++..+.
T Consensus 271 ~~~~y~~~-n---~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~ 345 (559)
T TIGR00840 271 TMKKYVEA-N---MSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWIT 345 (559)
T ss_pred HHHhhhcc-c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99875421 1 122222222 33445789999999999874332212 2334444555667999999988753
Q ss_pred ----CCCCChhhHHHHhhccc-cchhhhhhccC
Q psy3081 298 ----GSSLNLKEKLFVAFSWM-AKASVQLFLYL 325 (327)
Q Consensus 298 ----~~~~~~~e~~~~~~~~~-pr~~v~~al~~ 325 (327)
..+.++||+.++ +|. +||.|+.|+|.
T Consensus 346 ~~~~~~~~~~~e~~il--~w~GlRGaVa~aLAl 376 (559)
T TIGR00840 346 NEFRPVEIPYKDQLVI--FYAGLRGAVAFALAL 376 (559)
T ss_pred HHhccCCCChhhhhhe--eeeccccHHHHHHHH
Confidence 346899999999 554 59999988863
No 11
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=4.3e-31 Score=261.37 Aligned_cols=307 Identities=14% Similarity=0.057 Sum_probs=220.0
Q ss_pred chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
+..|+++|+++||++++..+ ..+.++++|++++||.+|+|+|++++||.++.....+..+++.+.. .+....+.++
T Consensus 33 ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 111 (558)
T PRK10669 33 LVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATL-LGMALSAVLG 111 (558)
T ss_pred HHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 46799999999999988543 3569999999999999999999999999987766666667666654 4455567789
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC---CchHH----H
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS---EDSLL----Y 152 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~---~~~~~----~ 152 (327)
+++..++++|++++.||++++.+.++|.+.. +++.+++.++.+.+||..+++++.++..+... +.... .
T Consensus 112 ~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l----~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~ 187 (558)
T PRK10669 112 WSLMTGIVFGLCLSTASTVVLLRALEERQLI----DSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAV 187 (558)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----cCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHH
Confidence 9999999999999999999999998876543 46899999999999999999888877655431 11111 1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc-cchhHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHhhhh
Q psy3081 153 NIV-LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFV-VPLRIIMLLGGGLIVIF-ASEHLGLGGAGPLGVIASAFVSSYSW 229 (327)
Q Consensus 153 ~~~-~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~-~ae~~g~~~s~~la~~i~g~~~~~~~ 229 (327)
.+. .....+.......++..+..+|+.|+..+.. ++.....++..++.+.. .+|.+ +.|..+|+|++|.++++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~~~l--Gls~~lGAflaGl~l~~~- 264 (558)
T PRK10669 188 DLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGAVELF--DVSFALGAFFAGMVLNES- 264 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHhCC-
Confidence 111 1111111111122233344455544433211 22233333444444443 35777 557999999999988641
Q ss_pred cccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHH
Q psy3081 230 SKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFV 309 (327)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~ 309 (327)
+..+++++...++.+++.|+||+.+|+++|+..+.. .+...+.+++..+++|.++++..++..|+++||++..
T Consensus 265 ------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~-~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~ 337 (558)
T PRK10669 265 ------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQ-QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTI 337 (558)
T ss_pred ------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 134455555566778899999999999999987632 2334445566678999999999999999999999999
Q ss_pred hhccccchhhhhhcc
Q psy3081 310 AFSWMAKASVQLFLY 324 (327)
Q Consensus 310 ~~~~~pr~~v~~al~ 324 (327)
|+++.+||+.+..++
T Consensus 338 gl~l~~~Gef~lii~ 352 (558)
T PRK10669 338 AASLAQIGEFAFILA 352 (558)
T ss_pred HHHHhcccchHHHHH
Confidence 999999999886544
No 12
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.98 E-value=1.9e-30 Score=234.90 Aligned_cols=250 Identities=18% Similarity=0.153 Sum_probs=192.9
Q ss_pred chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
...|+++|+++||+.+|..+ ..+.++++++.+++|.+|+|+|++++||++|+...++..++.++.+..+...++.++
T Consensus 19 ~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (273)
T TIGR00932 19 VLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLG 98 (273)
T ss_pred HHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46799999999999888443 356899999999999999999999999999999999999999996666666677899
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHH-HH
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVL-GP 158 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~-~~ 158 (327)
+++..++++|+++++||++++.++++|++.. +++.++++++++.+||..+++.+.+......+++........ ..
T Consensus 99 ~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~----~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (273)
T TIGR00932 99 LALGAAVVIGIILALSSTAVVVQVLKERGLL----KTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLL 174 (273)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 9999999999999999999999999887643 368999999999999999999999888766532211112111 22
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCC-ccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC
Q psy3081 159 SSLIIGLAFGIIWGSLAKVVPEKGDPF-VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE 237 (327)
Q Consensus 159 ~~i~~g~~~g~~~g~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~ 237 (327)
..+....+.+.+.+|..+|..|+.+++ +.+.....++...+..+..+|.+ |.|+++|++++|+++++.. .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~--g~s~~lgaf~aGl~~~~~~-------~ 245 (273)
T TIGR00932 175 KVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLL--GLSMALGAFLAGVVLSESE-------Y 245 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHcCCc-------h
Confidence 223333344455556666655543321 12344555566677778889988 6679999999999988521 2
Q ss_pred CchHHhHHHHHHHHHHHHHHHHhccccc
Q psy3081 238 DNPVATAFEIFWMIFEPILFGLTGTQFK 265 (327)
Q Consensus 238 ~~~l~~~~~~~~~~~~plfF~~~G~~i~ 265 (327)
+++++++++++.+++.|+||+++|+++|
T Consensus 246 ~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 246 RHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 3567788888889999999999999876
No 13
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.8e-30 Score=235.21 Aligned_cols=307 Identities=21% Similarity=0.266 Sum_probs=253.5
Q ss_pred chhhhhhhheecccccc--ccccH---HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 3 KHLFSLFGAFIGGNSEM--VLDEF---SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~--~~~~~---~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
+.+|+..|++.|-.+.+ .++.+ ..+.+++++.++|..|+..+++.+|...++++.++..+++++..+.+..++|.
T Consensus 34 LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l 113 (574)
T COG3263 34 LLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL 113 (574)
T ss_pred HHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999887 34444 37889999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCC-ch-HHHHHH
Q psy3081 78 LNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSE-DS-LLYNIV 155 (327)
Q Consensus 78 ~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~-~~-~~~~~~ 155 (327)
++.+|.+++++|+++.+||.+.+.+.+.+ .+.++|++.+++.||.=||.+++.+--.+..+...+ .+ ++...+
T Consensus 114 l~l~wle~~LiGAiVgSTDAAAVF~lL~~-----~nl~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll 188 (574)
T COG3263 114 LNLDWLEGLLIGAIVGSTDAAAVFSLLGG-----KNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLL 188 (574)
T ss_pred hccHHHHHHHHHHhhccccHHHHHHHHcc-----CChhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHH
Confidence 99999999999999999999999988743 235569999999999999999987755555554433 32 233345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC
Q psy3081 156 LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN 235 (327)
Q Consensus 156 ~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~ 235 (327)
.+..+...|.++|...||+..+..+|.+ .++.....++++.+++.+..++.+ ++||+++++++|+..||.--
T Consensus 189 ~f~~q~glG~l~G~~gg~l~~~~Inr~n-Ld~GL~pil~la~~Ll~fs~t~ai--GGsG~LaVYl~Gll~GN~~i----- 260 (574)
T COG3263 189 GFLQQFGLGLLLGLGGGKLLLQLINRIN-LDSGLYPILALAGGLLIFSLTGAI--GGSGILAVYLAGLLLGNRPI----- 260 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHhCCCcc-----
Confidence 5788999999999999999888888875 334566777788888999999998 78999999999999998311
Q ss_pred CCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081 236 IEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMA 315 (327)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~p 315 (327)
+.++.+.+.++.+..+.+...|...|+.++++++........++.+...++.|++.+|++....++++||+.++ +|.+
T Consensus 261 ~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fv--SWvG 338 (574)
T COG3263 261 RARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFV--SWVG 338 (574)
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchhee--ehhh
Confidence 13455656667787889999999999999999884433333444555668999999999999999999999999 8886
Q ss_pred -chhhhhhcc
Q psy3081 316 -KASVQLFLY 324 (327)
Q Consensus 316 -r~~v~~al~ 324 (327)
||-|+.-+|
T Consensus 339 LRGAv~IilA 348 (574)
T COG3263 339 LRGAVPIILA 348 (574)
T ss_pred cccchhhhHh
Confidence 888886665
No 14
>KOG1965|consensus
Probab=99.91 E-value=2.4e-23 Score=197.72 Aligned_cols=291 Identities=17% Similarity=0.184 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh------cCCcHHHHHHHHhHhhccchhh
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF------LNLPWIWAFLTGSIFAAVSPAV 99 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~alllg~~ls~Ts~~v 99 (327)
.+-.+-+..+.|..|++++.+.++||..++...+..++.+++.+.+...+++ .++++.+++.+|+++|+|||+.
T Consensus 100 ~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVt 179 (575)
T KOG1965|consen 100 LFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVT 179 (575)
T ss_pred HHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchH
Confidence 6778889999999999999999999999999999999999988777776665 3678999999999999999999
Q ss_pred hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHH--H-HHH----HHHHHHHHHHHHHHHHH
Q psy3081 100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLL--Y-NIV----LGPSSLIIGLAFGIIWG 172 (327)
Q Consensus 100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~--~-~~~----~~~~~i~~g~~~g~~~g 172 (327)
++++++|++. ++++..++.|||++||+++++++..+......+.+.. . .+. .+..+...|+.+|++.+
T Consensus 180 vLaIfnel~v-----d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA 254 (575)
T KOG1965|consen 180 VLAIFNELGV-----DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISA 254 (575)
T ss_pred HHHHHHHhCC-----CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988654 3588899999999999999999999887766544322 1 122 24445556666666666
Q ss_pred HHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCc-hHHhHHHHHHHH
Q psy3081 173 SLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDN-PVATAFEIFWMI 251 (327)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 251 (327)
++.++..-| + ....+..+.+.+++..|+.||.. |.||+++++.+|+..+.+-. .+...+++ ...+.++.+..+
T Consensus 255 ~~lK~~~l~-~--~~~lE~al~ll~sY~sY~lAE~~--~lSGIvtVlFcGI~msHYt~-~NlS~~Sqit~kh~f~~lsfl 328 (575)
T KOG1965|consen 255 LVLKFLYLR-R--TPSLESALMLLMSYLSYLLAEGC--GLSGIVTVLFCGIVMSHYTY-HNLSGESQITTKHFFRTLSFL 328 (575)
T ss_pred HHHHHHHhc-C--CcHHHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHH
Confidence 666655443 1 23456777788899999999987 77999999999988875432 22111222 233345666678
Q ss_pred HHHHHHHHhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CChhhHHHHhhccccchhhh
Q psy3081 252 FEPILFGLTGT-QFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSS----------LNLKEKLFVAFSWMAKASVQ 320 (327)
Q Consensus 252 ~~plfF~~~G~-~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~----------~~~~e~~~~~~~~~pr~~v~ 320 (327)
.+.+.|.++|+ .++.+.+.....+......++..++|.+-++......+ .|.|+...+++...=||-++
T Consensus 329 AEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs 408 (575)
T KOG1965|consen 329 AETFIFIYLGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVS 408 (575)
T ss_pred HHHHHHHHHhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHH
Confidence 99999999995 46666664443345666677778999999998865443 34455566655544599999
Q ss_pred hhccCCC
Q psy3081 321 LFLYLGK 327 (327)
Q Consensus 321 ~al~~~~ 327 (327)
.|+|.++
T Consensus 409 ~ALa~~~ 415 (575)
T KOG1965|consen 409 FALALGD 415 (575)
T ss_pred HHHHhhh
Confidence 9998763
No 15
>KOG4505|consensus
Probab=99.90 E-value=5.6e-23 Score=181.75 Aligned_cols=304 Identities=15% Similarity=0.157 Sum_probs=216.9
Q ss_pred hhhhhheeccccccccccH---------HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy3081 6 FSLFGAFIGGNSEMVLDEF---------SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY 76 (327)
Q Consensus 6 ~ll~GillGp~~~~~~~~~---------~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 76 (327)
-.+.|+++||+.++.+++. .-++.+-++.-.|..+.|++.+.+.+||+.+..+-+..+....+..+.+.|.
T Consensus 44 a~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~ 123 (467)
T KOG4505|consen 44 AVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYA 123 (467)
T ss_pred hhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999855422 2677888999999999999999999999999887666666665555556665
Q ss_pred hc-CCcHHHHHHHHhHhhccchhhhHHHHHHhh-hcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch----H
Q psy3081 77 FL-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLR-SKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS----L 150 (327)
Q Consensus 77 ~~-~~~~~~alllg~~ls~Ts~~v~~~~l~~l~-~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~----~ 150 (327)
+. +++...++.+++++++|||....++..+-+ .|+ +|.|+++++.+||..||.+++..+-....+...... -
T Consensus 124 l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akr--vPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~r 201 (467)
T KOG4505|consen 124 LIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKR--VPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGR 201 (467)
T ss_pred HhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhh--ChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCC
Confidence 55 899999999999999999988777765322 232 688999999999999999999887766665554322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc-chhH--HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhh
Q psy3081 151 LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVV-PLRI--IMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSY 227 (327)
Q Consensus 151 ~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~ 227 (327)
-|.....+++...|.++|.+.|++.|...|..++++. +.+. ..-+.+++.|..+.+.+ +++..+-.+.+|..++.
T Consensus 202 dwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtii--GvddLl~sFfAGi~Fsw 279 (467)
T KOG4505|consen 202 DWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTII--GVDDLLVSFFAGIVFSW 279 (467)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhee--chhHHHHHHHhhhhcch
Confidence 2344557788889999999999988877664432221 1222 22234567777778877 56788888888877652
Q ss_pred hhcccCCCCCCchH-HhHHHHHH-HHHHHHHHHHhcccccccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHh--C
Q psy3081 228 SWSKQGWNIEDNPV-ATAFEIFW-MIFEPILFGLTGTQFKLSELDPQ-----IVSIAAIIVIGGVVTRILITVLVAV--G 298 (327)
Q Consensus 228 ~~~~~~~~~~~~~l-~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~~-----~~~~~~~~~~~~~i~r~~~~~l~~~--~ 298 (327)
++| ..++. +.+.+.+. .++...||.+.|..++++..+.. .|-..++-+...++-|+..+++.-- .
T Consensus 280 ----d~w--Fsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iP 353 (467)
T KOG4505|consen 280 ----DEW--FSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIP 353 (467)
T ss_pred ----hHH--hhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCc
Confidence 222 11111 23444444 36888999999999999987542 3334444455556677777766532 2
Q ss_pred CCCChhhHHHHhhccccchhhhh
Q psy3081 299 SSLNLKEKLFVAFSWMAKASVQL 321 (327)
Q Consensus 299 ~~~~~~e~~~~~~~~~pr~~v~~ 321 (327)
.-.+|||++++ |+.++-+|.|
T Consensus 354 dikswkEALFv--GhFGPIGVgA 374 (467)
T KOG4505|consen 354 DIKSWKEALFV--GHFGPIGVGA 374 (467)
T ss_pred chhhHHHHHHh--ccCCCccHHH
Confidence 23699999999 8998877765
No 16
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.1e-19 Score=159.19 Aligned_cols=304 Identities=14% Similarity=0.101 Sum_probs=203.8
Q ss_pred chhhhhhhheeccccccccc---cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 3 KHLFSLFGAFIGGNSEMVLD---EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~---~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
+..|+++|++.||+.+|... -.+.++|+|++++||-.|++++.+++...+.-..--++.+.... ...+....+..|
T Consensus 33 LVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~a-t~lg~gL~~~lg 111 (408)
T COG4651 33 LVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALA-TLLGMGLSSLLG 111 (408)
T ss_pred hHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHH-HHHHhHHHHHcC
Confidence 45799999999999988332 34589999999999999999999998877543332233332222 223334456789
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC---CchH----HH
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS---EDSL----LY 152 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~---~~~~----~~ 152 (327)
+++...+++|.++|..|+.+..+.++| |+. .+++=+++.++.-.++|...++.+..+-++++. +... .+
T Consensus 112 ws~~~glvfGlaLS~aSTVvllraLqE---r~l-idt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~ 187 (408)
T COG4651 112 WSFGTGIVFGLALSVASTVVLLRALEE---RQL-IDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLV 187 (408)
T ss_pred CCcccceeeeehhhhHHHHHHHHHHHH---hcc-ccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHH
Confidence 999999999999999998877766654 432 345668899999999999998877766555441 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCCCc-cchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhc
Q psy3081 153 NIVLGPSSLIIGLAFGIIWGS-LAKVVPEKGDPFV-VPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWS 230 (327)
Q Consensus 153 ~~~~~~~~i~~g~~~g~~~g~-l~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~ 230 (327)
.+.....+....+.++.+.|. +..|+.++....- .+.-...++++++...+++..+ ++.|.-+|++++|+++...
T Consensus 188 ~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga~~L-fgvsfaLGAffaGMvL~es-- 264 (408)
T COG4651 188 DLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAEL-FGVSFALGAFFAGMVLAES-- 264 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhcccee-eccchhHHHHHHHHHhcch--
Confidence 222122233333444444443 3445544443210 1222333444555555544443 4778999999999888632
Q ss_pred ccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHh
Q psy3081 231 KQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVA 310 (327)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~ 310 (327)
+.+++..+..-++.+.|..+||+.+|+..|+..+..+ ....+....+.+.+|-...+...+..+.+.|.++.++
T Consensus 265 -----elshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~-pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis 338 (408)
T COG4651 265 -----ELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQ-PLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTIS 338 (408)
T ss_pred -----hhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcc-hHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHH
Confidence 1234444444467789999999999999999887333 3455556666789999999999999999999999888
Q ss_pred hccccchhhh
Q psy3081 311 FSWMAKASVQ 320 (327)
Q Consensus 311 ~~~~pr~~v~ 320 (327)
.+...-||..
T Consensus 339 ~SLaqigEFs 348 (408)
T COG4651 339 ASLAQIGEFS 348 (408)
T ss_pred HHHHhhhhHH
Confidence 7766666654
No 17
>KOG1650|consensus
Probab=99.83 E-value=8.3e-20 Score=184.61 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=218.5
Q ss_pred hhhhhhhheeccccccc--------cc-----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHH
Q psy3081 4 HLFSLFGAFIGGNSEMV--------LD-----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV 70 (327)
Q Consensus 4 ~~~ll~GillGp~~~~~--------~~-----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 70 (327)
...+++|+++||+.++. ++ ..+.++.+|..+++|..|+|+|.+.+||+.++...++..++++|+...
T Consensus 51 ~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g 130 (769)
T KOG1650|consen 51 ISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLG 130 (769)
T ss_pred HHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhh
Confidence 46789999999998771 11 345889999999999999999999999999999999999999986543
Q ss_pred HHHHHHhcC-----C-c----HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHH
Q psy3081 71 VIATHYFLN-----L-P----WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIV 140 (327)
Q Consensus 71 ~~~~~~~~~-----~-~----~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~ 140 (327)
........+ . + ..+=.....+.+.|+.++...++.|+|..+ +++|++.++++.+||..+|.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~----se~Grla~saa~v~dv~~~~ll~~~ 206 (769)
T KOG1650|consen 131 FGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN----SELGRLALSAAVVNDVAGWILLALA 206 (769)
T ss_pred hhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh----chhhhhhhhhhhhhhHHHHHHHHHH
Confidence 333333211 1 1 114467778999999999999999998765 7999999999999999999888777
Q ss_pred HHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--ccchhHHHHHHHHHHHHHHHHhhcCCCChHHH
Q psy3081 141 HSFMFSEDS-LLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF--VVPLRIIMLLGGGLIVIFASEHLGLGGAGPLG 217 (327)
Q Consensus 141 ~~~~~~~~~-~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la 217 (327)
....+.+.. ...........+...+..-.+.-....|+.||..+. ..+.....++...+.+....+.++ +..+..|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~-~i~~~~G 285 (769)
T KOG1650|consen 207 LAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIG-GIHSIFG 285 (769)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhc-cccccch
Confidence 766654432 211222211111111111112345566666664321 123334455555666666677775 1234445
Q ss_pred HHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3081 218 VIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVA 296 (327)
Q Consensus 218 ~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~ 296 (327)
+ +..|...|+++ +....+.++++.+. .++.|+||...|.+.|+..+.. +......+.....+|++++...+
T Consensus 286 a----f~~Gl~iP~~~--p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~--~~~~~~~i~~~~~~K~l~t~~~s 357 (769)
T KOG1650|consen 286 A----FILGLAIPHGP--PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK--WGALIRTILIFGAVKLLSTLGTS 357 (769)
T ss_pred h----heEEEecCCCC--chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555555543 35567888888775 6999999999999999998844 45555667777899999999999
Q ss_pred hCCCCChhhHHHHhhccccchhhhhh
Q psy3081 297 VGSSLNLKEKLFVAFSWMAKASVQLF 322 (327)
Q Consensus 297 ~~~~~~~~e~~~~~~~~~pr~~v~~a 322 (327)
...+.++||++.+|..|..||.++..
T Consensus 358 l~~k~p~~~~l~l~~lm~~kgl~el~ 383 (769)
T KOG1650|consen 358 LYCKLPLRDSLALGLLMSTKGLVELI 383 (769)
T ss_pred HHhcCchhHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999998864
No 18
>KOG1966|consensus
Probab=99.77 E-value=3.3e-19 Score=169.02 Aligned_cols=308 Identities=17% Similarity=0.205 Sum_probs=224.3
Q ss_pred hhhhhhheecccccc--ccc----cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH--
Q psy3081 5 LFSLFGAFIGGNSEM--VLD----EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY-- 76 (327)
Q Consensus 5 ~~ll~GillGp~~~~--~~~----~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 76 (327)
+.++.|+++|-...+ ..+ +.+.+--.-+..+++.+|+-++-+.+..|..+++..+.++.+..++..+...+.
T Consensus 73 lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~ 152 (670)
T KOG1966|consen 73 LLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAIS 152 (670)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888875433 111 223566677899999999999999999999999999999888876554433222
Q ss_pred ---hcC--CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchH-
Q psy3081 77 ---FLN--LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSL- 150 (327)
Q Consensus 77 ---~~~--~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~- 150 (327)
+++ .+...-++.|+..|+.||+.+.++..|+. +++-+--++.|||.+||.+.++++....+...-++..
T Consensus 153 ~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-----VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~ 227 (670)
T KOG1966|consen 153 LSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-----VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNL 227 (670)
T ss_pred HhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-----cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccce
Confidence 345 34788999999999999999999987754 3346667889999999999999999988876542211
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy3081 151 -----LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVS 225 (327)
Q Consensus 151 -----~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~ 225 (327)
......+..-.++|.++|+++|++.....|..++ ..-.+..+++.+++++|..+|.. |.|+++|..++|..+
T Consensus 228 ~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~-vrviePvfif~~pYlaYL~aEm~--hlSgIlAii~CG~~m 304 (670)
T KOG1966|consen 228 TTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH-VRVLEPVFIFLLPYLAYLTAEMF--HLSGILAIIFCGLCM 304 (670)
T ss_pred eEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc-eeeecchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 1223344444577888898888877666665543 23456778888999999999987 889999999999998
Q ss_pred hhhhcccCCCCCCchHHhHHHH-HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Q psy3081 226 SYSWSKQGWNIEDNPVATAFEI-FWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS----- 299 (327)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~----- 299 (327)
....+ .+.+++...-.+.+-+ .....+++.|++.|.+.--+...++ +.+.++-++...+.|.+++...++..
T Consensus 305 ~~Yv~-~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd-~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~ 382 (670)
T KOG1966|consen 305 KKYVE-ANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD-FAFICLTLVFCLIYRAIGVVVLTWFLNKFRM 382 (670)
T ss_pred HHHHh-cccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee-hhhhhhHHHHHHHHHHHHhhhhhhhhhhhhe
Confidence 87764 3322222222233322 3346799999999998765554443 45666777778899999988877553
Q ss_pred -CCChhhHHHHhhccccchhhhhhc
Q psy3081 300 -SLNLKEKLFVAFSWMAKASVQLFL 323 (327)
Q Consensus 300 -~~~~~e~~~~~~~~~pr~~v~~al 323 (327)
+++.+|...++.|.+ ||-++-+|
T Consensus 383 ~k~~~~DQfimsyGGL-RGAiaF~L 406 (670)
T KOG1966|consen 383 VKLEFVDQFIMSYGGL-RGAIAFGL 406 (670)
T ss_pred eeccccceeeeecCCc-chhhheeE
Confidence 568899999988766 77666544
No 19
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.53 E-value=4.5e-12 Score=119.05 Aligned_cols=254 Identities=13% Similarity=0.071 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHhccCCChH-------HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPP-------ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~-------~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~ 97 (327)
+.+.|.-+.+..|.+|+|++.+ +.||...+ ..-++.++++|.. .|+.++..-..+.--=++-++||.
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n~~~~~~~~GW~Ip~ATDI 137 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVNLAGGGALRGWAIPTATDI 137 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHhCCchhhhhhhhhhhhhHH
Confidence 4788889999999999999654 33333322 2345567776642 234444322222222246789999
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+.++.++..+..+ .|++++..+++.+++||+.++++.+++. +++.....+. . .. .....-+++++
T Consensus 138 AFalgvLallG~r---vp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i~~~~L~---~--a~---~~~~~l~~l~~ 202 (423)
T PRK14853 138 AFALAVLAVIGTH---LPSALRTFLLTLAVVDDLLAITVIAVFY----TSELNLEALL---L--AL---VPLALFWLLVQ 202 (423)
T ss_pred HHHHHHHHHhccc---cCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCCCHHHHH---H--HH---HHHHHHHHHHH
Confidence 9999998776543 5678999999999999999999988766 2222211111 0 00 11112233332
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC-----CCCchHHhHHHHHH-HH
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN-----IEDNPVATAFEIFW-MI 251 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~ 251 (327)
. +.+ +...-.+ ..+.+++..+..|+| +.+|+++.|+.+-..-++++.+ +..+++++++++.. .+
T Consensus 203 ~--~V~----~~~~Y~i--lg~~lW~~~~~sGiH--atiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ 272 (423)
T PRK14853 203 K--RVR----KWWLLLP--LGVATWILVHESGVH--ATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGV 272 (423)
T ss_pred c--CCc----hhhHHHH--HHHHHHHHHHHhCCC--HHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence 1 111 1111122 234556667777776 7888777777764311100000 01245667777776 58
Q ss_pred HHHHH-HHHhcccccc-ccc-chhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 252 FEPIL-FGLTGTQFKL-SEL-DPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 252 ~~plf-F~~~G~~i~~-~~l-~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
+.|+| |...|.++|. +.+ +...-.....+++..+++|++|++..++. .+.+|++-.-+
T Consensus 273 ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv 343 (423)
T PRK14853 273 AVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV 343 (423)
T ss_pred HHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence 89999 9999999986 434 11111245566777889999998887532 35678875554
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.27 E-value=3.1e-10 Score=104.85 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-+....+ +.. .-++.++++|.. .|..++.+-.. ..-| ++=.+||.
T Consensus 54 ~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~~~~~-~~~GW~IP~ATDi 127 (373)
T TIGR00773 54 HWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNANDPI-TREGWAIPAATDI 127 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCCc-ccCccccccHHHH
Confidence 47888899999999999999887654332 221 224445555532 23344331100 0111 34567888
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-+..++.-+. .+.|.+++..+++-+++||+.+++..+++.+ ++.....+ ..+. .....-++++|
T Consensus 128 AFalgvlallG---~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~i~~~~L-------~~a~-~~~~~l~~~~~ 192 (373)
T TIGR00773 128 AFALGVMALLG---KRVPLALKIFLLALAIIDDLGAIVIIALFYT----NDLSMAAL-------LVAA-VAIAVLAVLNR 192 (373)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CCCCHHHH-------HHHH-HHHHHHHHHHH
Confidence 87777765443 3478888999999999999999988876552 22111111 1111 11111223333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHH
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPIL 256 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plf 256 (327)
. +.+ ......+...++.+.. +..|+| +.+|+++.|+.+.... +..++..+++++.+++.. .++.|+|
T Consensus 193 ~----~v~---~~~~y~~lgvllW~~~-~~sGVH--atiaGvllGl~iP~~~--~~~~~pl~rleh~L~p~v~~lilPlF 260 (373)
T TIGR00773 193 C----GVR---RLGPYMLVGVILWFAV-LKSGVH--ATLAGVIIGFFIPLKG--KKGESPLKRLEHVLHPWVAYLILPLF 260 (373)
T ss_pred c----CCc---hhhHHHHHHHHHHHHH-HHcCCc--HHHHHHHHeeeecccc--cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 1122222223333333 566776 6667666665554311 110001234555556555 4688999
Q ss_pred -HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 257 -FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 257 -F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
|...|.++|...++....+....+++..+++|+++++..++. .+.+|+|-.-+
T Consensus 261 AFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv 324 (373)
T TIGR00773 261 AFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAV 324 (373)
T ss_pred HHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 999999998765533222335566777889999999998632 35678875544
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.64 E-value=1.4e-06 Score=81.04 Aligned_cols=252 Identities=17% Similarity=0.136 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhhh---hh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWST---VL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-.....+. .. .-++.++++|+. .|+.++.+-. ...-| .+=.+||.
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~-~~~~GWgIPmATDI 134 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNP-ETLRGWAIPAATDI 134 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCC-cccCccccccHHHH
Confidence 478888999999999999998876543322 21 223445555532 2333432100 00111 24568898
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-++.++.-+. .+.|.+++..+++-+++||+.+++..+++.+ ++.....+ ..+. .+...-++++|
T Consensus 135 AFAlgvL~llG---~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~~~~L-------~~a~-~~~~~l~~ln~ 199 (389)
T PRK09560 135 AFALGVLALLG---KRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLSLPAL-------ALAA-IAIAVLFLLNR 199 (389)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCCHHHH-------HHHH-HHHHHHHHHHH
Confidence 88888776433 3378888999999999999999988876552 22111111 1111 11111223333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHHH-HHH
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWMI-FEP 254 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~p 254 (327)
. +.+ ......+....+.+. -..-|.| +-+|.++.|++.-... +++ +++ .+++++.+++...+ ..|
T Consensus 200 ~--~v~-----~~~~Y~~~G~~lW~~-~l~SGvH--aTiAGV~la~~iP~~~-~~~-~~~~pl~rleh~L~p~v~~~IlP 267 (389)
T PRK09560 200 L--GVT-----KLTPYLIVGAILWFA-VLKSGVH--ATLAGVVLAFCIPLKG-KKG-DEESPLHHLEHALHPWVAFAILP 267 (389)
T ss_pred c--CCc-----cchHHHHHHHHHHHH-HHHcccc--HHHHHHHHHHhccccC-CCC-CCCCHHHHHHHHhhhhhhhhhHH
Confidence 2 111 111222222233333 3334666 5666666665554311 111 001 13455666666554 466
Q ss_pred HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
+| |.-.|..++-..+....-.....+.+..+++|++|++..++. .+.+|++-.-+
T Consensus 268 lFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv 333 (389)
T PRK09560 268 LFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGV 333 (389)
T ss_pred HHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 65 555666664323321111234456666789999999988632 35678875544
No 22
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.59 E-value=1.5e-07 Score=87.14 Aligned_cols=256 Identities=13% Similarity=0.109 Sum_probs=120.2
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHH--HHHHHhcCCcHHHHHHHH-hHhhccchhh
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVV--IATHYFLNLPWIWAFLTG-SIFAAVSPAV 99 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~alllg-~~ls~Ts~~v 99 (327)
..+.+.|.-+.+..|..|+|++.+-.....++.- -+..+.+.....+. ...|..++.+-.. ..-| ++=.+||.+-
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r-~a~lP~~AAlGGm~vPalIyl~~n~~~~~-~~~GW~IP~ATDIAF 132 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPR-KAALPIIAALGGMLVPALIYLAFNAGGPE-AAHGWAIPMATDIAF 132 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTT-TSHHHHHHHHHHTTTTHHHHGGG--SSTT-HHHHTSSSS---HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChh-hhhhHHHHHHhcchHHHHHHheeecCCCC-cCceEEecccccHHH
Confidence 3457889999999999999999887654333321 12223332221111 1334445432111 1222 4567899988
Q ss_pred hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3081 100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVP 179 (327)
Q Consensus 100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~ 179 (327)
+..++.-+. .+.|++++..+++-+.+||+.+++..+++.+ ++.....+ ..+.. ....-+.++|.
T Consensus 133 Algvlal~G---~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~i~~~~L-------~~a~~-~~~~l~~l~r~- 196 (378)
T PF06965_consen 133 ALGVLALLG---KRVPASLRVFLLALAIVDDLGAILVIALFYT----DGISLLWL-------LLAAA-ALLLLFVLNRL- 196 (378)
T ss_dssp HHHHHHSS----SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHH-------HHHHH-HHHHHHHHHHT-
T ss_pred HHHHHHHhc---CCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CCCCHHHH-------HHHHH-HHHHHHHHHHC-
Confidence 877775333 3468889999999999999999998887653 22111111 11111 11112233331
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCC---CCC---chHHhHHHHHHH-HH
Q psy3081 180 EKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN---IED---NPVATAFEIFWM-IF 252 (327)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~---~~~---~~l~~~~~~~~~-~~ 252 (327)
+.+ ......+. +...++.-..-|.| +- ++|.+.+...|.++.. +.+ +++++.+++..+ +.
T Consensus 197 -~v~-----~~~~Y~~~-G~~lW~~~l~SGvH--aT----iAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~I 263 (378)
T PF06965_consen 197 -GVR-----SLWPYLLL-GILLWYAVLKSGVH--AT----IAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVI 263 (378)
T ss_dssp -T--------THHHHHH-HHHHHHHTTTSHHH--HH----HHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTH
T ss_pred -CCc-----eehHHHHH-HHHHHHHHHHcCCC--HH----HHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhh
Confidence 111 11122222 22333322222333 33 4455555555432211 111 234455555544 44
Q ss_pred HHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCChhhHHHH
Q psy3081 253 EPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS----------SLNLKEKLFV 309 (327)
Q Consensus 253 ~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~----------~~~~~e~~~~ 309 (327)
.|+| |.-.|.+++-..++...-.....+.+..+++|++|++..++.. +.+|++-.-+
T Consensus 264 lPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv 331 (378)
T PF06965_consen 264 LPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGV 331 (378)
T ss_dssp HHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTH
T ss_pred HHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 6655 6667777666554322212233455566799999999886432 4567765444
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.35 E-value=2.6e-05 Score=72.24 Aligned_cols=250 Identities=16% Similarity=0.189 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhh---hhhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLW---STVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~---~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-..... |+.. .-++.++++|.. .|..++.+ ....-| ++=.+||.
T Consensus 58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n~~--~~~~~GW~IP~ATDI 130 (383)
T PRK14854 58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSINHD--IKVINGWAIPSATDI 130 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhccC--CcccCccccccHHHH
Confidence 4788889999999999999887655322 2222 224445555542 23344332 111112 34668898
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-+..++.-+. .+.|..++-.+++-+.+||+.+++..+++.+ ++.....+ ..+.. ....-+.++|
T Consensus 131 AFAlgvLallG---~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~A~~-~~~~l~~~nr 195 (383)
T PRK14854 131 AFTLGILALLG---TRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSLSLLSL-------SLGTL-FILAMIICNR 195 (383)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCccHHHH-------HHHHH-HHHHHHHHHH
Confidence 88777765443 3368889999999999999999988876552 22211111 11111 1111122333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHH-HHHH
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWM-IFEP 254 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~-~~~p 254 (327)
.. +.++ .....+. ++..++.-..-|.| +-+|.++.|+..-. +..+.+ .+++++.+++... +..|
T Consensus 196 ~~-~v~~-----~~~Y~~~-G~~lW~~~l~SGvH--aTiAGV~~a~~iP~----~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 196 IF-KINR-----SSVYVVL-GFFAWFCTIKSGVH--ATLAGFTTALCIPF----RENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred hc-CCce-----ehHHHHH-HHHHHHHHHHhccc--HHHHHHHHHHhccc----CCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 21 1111 1112222 23333333344667 56665555555433 211111 2345566666654 4566
Q ss_pred HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
+| |.-.|.+++-...+...-.....+.+..+++|.+|++..++. .+.+|||-.-+
T Consensus 263 lFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv 328 (383)
T PRK14854 263 VFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGI 328 (383)
T ss_pred HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 55 555666663222211111234455666789999999988532 35678875544
No 24
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.33 E-value=3.2e-05 Score=69.52 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhh
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAV 99 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v 99 (327)
.+-|--+....+..|+|++.+.+..+.+ +.. .-+..+++.|. ..|..++.+-..+.===++=++||.+-
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n~~~p~~~~GWaIP~ATDiAF 139 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALNAGDPATLEGWAIPMATDIAF 139 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheeecCChhhhcCcCcccHHHHHH
Confidence 5566677788889999999888765433 222 12333444442 224444433221111113567888888
Q ss_pred hHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3081 100 VVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVP 179 (327)
Q Consensus 100 ~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~ 179 (327)
+..++.-+.. .+|..+.-.+++-+.+||.-+++..++..+ ++-+.. .+ ...++.+.++ ..++|
T Consensus 140 AlGvlaLLG~---rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~-al------~~a~~~i~vL--~~lN~-- 202 (390)
T COG3004 140 ALGVLALLGS---RVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMA-AL------GIAALAIAVL--AVLNR-- 202 (390)
T ss_pred HHHHHHHhcC---CCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHH-HH------HHHHHHHHHH--HHHHH--
Confidence 7777765443 378888899999999999999998876553 222211 10 1111111111 11222
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHH-HHHHHHH-H
Q psy3081 180 EKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFW-MIFEPIL-F 257 (327)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~plf-F 257 (327)
.+-. ....-++.. ..+...+-+ -|.| +-++.++.|++.-..- ++.+..-+++++.+++-. .+..|+| |
T Consensus 203 --~~v~--~l~~Y~~~g-viLW~~vlk-SGVH--ATLAGVi~~f~IPl~~--k~~~spl~~leh~L~pwvaf~IlPlFaF 272 (390)
T COG3004 203 --LGVR--RLSPYLLVG-VILWIAVLK-SGVH--ATLAGVILAFFIPLKT--KEGESPLERLEHALHPWVAFFILPLFAF 272 (390)
T ss_pred --hCch--hhhHHHHHH-HHHHHHHHH-hhhH--HHHHHHHHHeeeeccC--CCCCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 1110 011112222 222222222 2455 5566556665554321 111112344555555543 3556765 5
Q ss_pred HHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 258 GLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 258 ~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
.-.|.+++-.+.+...-...+.+....+++|.++++..++. .+.||++-.-+
T Consensus 273 aNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v 334 (390)
T COG3004 273 ANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGV 334 (390)
T ss_pred ccCCcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHH
Confidence 66666655333332222344556667789999999887632 35688875443
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.31 E-value=2.7e-05 Score=73.34 Aligned_cols=249 Identities=17% Similarity=0.098 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-+....+ +.. .-++.++++|. ..|+.++.+-.. .-| ++=.+||.
T Consensus 65 ~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPA-----lIy~~~n~~~~~--~~GWgIPmATDI 137 (423)
T PRK14855 65 HWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPA-----ALYTALNAGGPG--ASGWGVPMATDI 137 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHH-----HHHheeecCCCc--cCccccccHHHH
Confidence 47788889999999999999887654332 221 12344555553 223444332111 112 35678998
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-+..++.-+. .+.|+.++..+++-+++||+.+++..+++.+ ++-+. ..+ ..+.. ....-++++|
T Consensus 138 AFAlgvLallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~-~~L-------~~a~~-~~~~l~~ln~ 202 (423)
T PRK14855 138 AFALGVLALLG---SRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNL-LAL-------LLAAL-TWALALLAGR 202 (423)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCH-HHH-------HHHHH-HHHHHHHHHH
Confidence 88888775543 3367788899999999999999988776552 22211 111 11111 1111223333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhh-hcccCC----------------------
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYS-WSKQGW---------------------- 234 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~-~~~~~~---------------------- 234 (327)
. +.+ ......+....+.+. -..-|.| +-+|.++.|++.-.. .++.+.
T Consensus 203 ~--~v~-----~~~~Y~~~G~~lW~~-~l~SGVH--aTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 203 L--GVT-----SLKIYAVLGALLWFF-VLKSGLH--PTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred c--CCc-----cccHHHHHHHHHHHH-HHHhccc--HHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 2 111 111222222333333 3344667 667766677666431 010000
Q ss_pred -C----C-C--CchHHhHHHHHHH-HHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC------
Q psy3081 235 -N----I-E--DNPVATAFEIFWM-IFEPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG------ 298 (327)
Q Consensus 235 -~----~-~--~~~l~~~~~~~~~-~~~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~------ 298 (327)
+ + + .+++++.+++... +..|+| |.-.|..++-+... .....+.+..+++|.+|++..++.
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~ 348 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGL 348 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC----cHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Confidence 0 0 0 1234444555444 356655 55566666432221 234455666789999999988632
Q ss_pred ----CCCChhhHHHH
Q psy3081 299 ----SSLNLKEKLFV 309 (327)
Q Consensus 299 ----~~~~~~e~~~~ 309 (327)
.+.+|++-.-+
T Consensus 349 a~lP~g~~w~~l~gv 363 (423)
T PRK14855 349 ASLPRRVNWLHMLGA 363 (423)
T ss_pred CCCCCCCCHHHHHHH
Confidence 35778875544
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.28 E-value=4.5e-05 Score=70.96 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhh---hhh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWS---TVL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-+....+ +.. .-++.+++.|+. .|+.++.+-. ...-| ++=.+||.
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~~~~-~~~~GWaIP~ATDI 134 (388)
T PRK09561 61 LWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNYADP-VTREGWAIPAATDI 134 (388)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheecCCC-cccCccccccHHHH
Confidence 46788889999999999999887654332 221 224445555532 2334433110 00111 34567898
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-+..++.-+. .+.|.+++..+++-+.+||+.+++..+++.+ ++.....+ ..+.. ....-++++|
T Consensus 135 AFalgvlallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~a~~-~~~~l~~ln~ 199 (388)
T PRK09561 135 AFALGVLALLG---SRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDLSMVSL-------GVAAV-AIAVLAVLNL 199 (388)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCccHHHH-------HHHHH-HHHHHHHHHH
Confidence 88887774433 3368888999999999999999988876552 22211111 11111 1111122333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCC--CchHHhHHHHHHHH-HHH
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIE--DNPVATAFEIFWMI-FEP 254 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~p 254 (327)
. +.+ ......+. +...++.-..-|.| +-+|.++.|+..-. +..+.+ -+++++.+++...+ ..|
T Consensus 200 ~--~v~-----~~~~Y~~~-G~~lW~~~l~SGvH--aTiAGV~la~~iP~----~~~~~~~pl~rleh~L~p~v~~~IlP 265 (388)
T PRK09561 200 C--GVR-----RTSVYILV-GVVLWVAVLKSGVH--ATLAGVIVGFFIPL----KEKHGRSPAERLEHGLHPWVAFLILP 265 (388)
T ss_pred c--CCc-----cchHHHHH-HHHHHHHHHHcccc--HHHHHHHHHhhccc----cCCCCCCHHHHHHHHhhhhhhheeHH
Confidence 2 111 11122222 23333333344667 55665555554432 210111 23456666666554 566
Q ss_pred HH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCChhhHHHH
Q psy3081 255 IL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG----------SSLNLKEKLFV 309 (327)
Q Consensus 255 lf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~----------~~~~~~e~~~~ 309 (327)
+| |.-.|..++-..++...-.....+.+..+++|.+|++..++. .+.+|++-.-+
T Consensus 266 lFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv 331 (388)
T PRK09561 266 LFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAV 331 (388)
T ss_pred HHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 54 555566653222221111233455666789999999988532 35678885544
No 27
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.27 E-value=5e-05 Score=71.83 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhhh---hh---hhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH-hHhhccch
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWST---VL---KLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG-SIFAAVSP 97 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg-~~ls~Ts~ 97 (327)
+.+.|.-+.+..|..|+|++.+-+....+. .. .-++.++++|. ..|+.++.+-.. .-| .+=.+||.
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPA-----lIY~~~n~~~~~--~~GWgIPmATDI 142 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPG-----LIYFFLNADTPS--QHGFGIPMATDI 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHH-----HHHhheecCCCc--cCccccccHHHH
Confidence 478889999999999999988766543322 21 22444555553 224444332111 112 34668898
Q ss_pred hhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3081 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 98 ~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~ 177 (327)
+-+..++.-+. .+.|..++..+++-+++||+.+++..+++.+ ++.....+ ..+. .....-++++|
T Consensus 143 AFAlgvLallG---~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i~~~~L-------~~a~-~~~~~l~~ln~ 207 (438)
T PRK14856 143 AFALGVIMLLG---KRVPTALKVFLITLAVADDLGAIVVIALFYT----TNLKFAWL-------LGAL-GVVLVLAVLNR 207 (438)
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCCcHHHH-------HHHH-HHHHHHHHHHH
Confidence 88887774433 3367888899999999999999998876552 22111111 1111 11112223333
Q ss_pred hcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcc--cCC--------------------C
Q psy3081 178 VPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSK--QGW--------------------N 235 (327)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~--~~~--------------------~ 235 (327)
. +.+ ......+. ++..++.-..-|.| +-+|.++.|++.-...++ +.. +
T Consensus 208 ~--~v~-----~~~~Y~~~-G~~lW~~~l~SGVH--aTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 208 L--NVR-----SLIPYLLL-GVLLWFCVHQSGIH--ATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred c--CCc-----cccHHHHH-HHHHHHHHHHccCc--HHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 2 111 11122222 23333333344666 667777777666432111 000 0
Q ss_pred C-------------C---CchHHhHHHHHHH-HHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081 236 I-------------E---DNPVATAFEIFWM-IFEPIL-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV 297 (327)
Q Consensus 236 ~-------------~---~~~l~~~~~~~~~-~~~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~ 297 (327)
+ . -+++++.+++... +..|+| |.-.|..++.+.. ...-.....+.+..+++|.+|++..++
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~-~~~~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN-LEVDKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh-hccCcHHHHHHHHHHhcchHHHHHHHH
Confidence 0 0 0223334444444 456665 6667777764422 111124455566678999999998863
Q ss_pred C----------CCCChhhHHHH
Q psy3081 298 G----------SSLNLKEKLFV 309 (327)
Q Consensus 298 ~----------~~~~~~e~~~~ 309 (327)
. .+.+|++-.-+
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv 378 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGA 378 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHH
Confidence 2 35678886554
No 28
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.57 E-value=0.076 Score=50.18 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=56.9
Q ss_pred cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHH-H
Q psy3081 209 GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVV-T 287 (327)
Q Consensus 209 g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i-~ 287 (327)
+++...++.+++.|.+++|..++.+..+.+++. ++.+.+...-+|=...=+++++..+. +...+.++++....+ .
T Consensus 244 ~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~---i~~I~~~sL~~fl~~almsl~l~~l~-~~a~Plliil~~q~i~~ 319 (368)
T PF03616_consen 244 GLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKT---IDRISGISLDLFLAMALMSLKLWVLA-DYALPLLIILAVQTILM 319 (368)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHhCcccCCHHH---HHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 567788999999999999988765432223223 34444443333323333456666663 333444443333333 3
Q ss_pred HHHHHHHHHhCCCCChhhHHHHhhcccc
Q psy3081 288 RILITVLVAVGSSLNLKEKLFVAFSWMA 315 (327)
Q Consensus 288 r~~~~~l~~~~~~~~~~e~~~~~~~~~p 315 (327)
=....+...+..+.|+ |+..++.|+.+
T Consensus 320 ~~f~~fv~fr~~gkdy-daavm~~G~~G 346 (368)
T PF03616_consen 320 VLFAYFVTFRVMGKDY-DAAVMSAGFCG 346 (368)
T ss_pred HHHHHHHhhhhhCCCh-hHHHHhhhhhc
Confidence 3444555667778887 55555444443
No 29
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.19 E-value=0.22 Score=47.26 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhhhhcc
Q psy3081 245 FEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQLFLY 324 (327)
Q Consensus 245 ~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~~al~ 324 (327)
-+++..++.=+||..+|+..|++.+.. .+..++.....+..-.+..+...+..|.|++|....+-+-.+-.+-++++|
T Consensus 265 ~~~lg~~lly~ffa~IGa~a~i~~l~~--ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~AnIGGpaTA~a~A 342 (378)
T PF05684_consen 265 ASELGTFLLYLFFAVIGASADISELLD--APSLFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNANIGGPATAPAVA 342 (378)
T ss_pred hHHHHHHHHHHHHHHHccccCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhcccCCcchHHHHH
Confidence 367778888899999999999998733 233334444556777788888889899999999999877775544455555
Q ss_pred CC
Q psy3081 325 LG 326 (327)
Q Consensus 325 ~~ 326 (327)
+.
T Consensus 343 ~a 344 (378)
T PF05684_consen 343 AA 344 (378)
T ss_pred Hh
Confidence 43
No 30
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.12 E-value=0.078 Score=48.57 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=98.9
Q ss_pred hhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHHHHHHhcCCcH
Q psy3081 6 FSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVIATHYFLNLPW 82 (327)
Q Consensus 6 ~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~ 82 (327)
..+..-.++|...+.....+......+.++||.-|+.++.+++++..++.... +.+...++. +.++.....+. .
T Consensus 18 ~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~~--l 94 (319)
T COG0385 18 WVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLFP--L 94 (319)
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 34455566676665555555566899999999999999999999866655432 223333332 22333333444 4
Q ss_pred HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCch--HHH-HHHHHHH
Q psy3081 83 IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS--LLY-NIVLGPS 159 (327)
Q Consensus 83 ~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~--~~~-~~~~~~~ 159 (327)
..-+..|.++..+.|+.+.+.......|| ++ ..-.+.+.++...+...-..+..+..+++. +.+ .+..+..
T Consensus 95 ~~~l~~Gl~ll~~~Pggv~S~~~t~lAkG-----nV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~ 168 (319)
T COG0385 95 PPELAVGLLLLGCCPGGVASNAMTYLAKG-----NV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILL 168 (319)
T ss_pred CHHHHHhHHheeeCCCchhHHHHHHHhcC-----cH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 45567788888888877766554545565 43 344566778888887777766665444321 222 3444555
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy3081 160 SLIIGLAFGIIWGSLAKV 177 (327)
Q Consensus 160 ~i~~g~~~g~~~g~l~~~ 177 (327)
.+..-+.+|.+......+
T Consensus 169 ~vllP~~LG~~~r~~~~~ 186 (319)
T COG0385 169 QVLLPFVLGQLLRPLLPK 186 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555556666555444333
No 31
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.05 E-value=0.31 Score=46.44 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=63.6
Q ss_pred cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH
Q psy3081 209 GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTR 288 (327)
Q Consensus 209 g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r 288 (327)
+.+...+..+++.|.+++|..++.+..+. .++.++.+.+...-+|-...=+++++.++ .+.+.+.++++...++.-
T Consensus 242 ~~~lP~fv~am~~giiirni~~~~~~~~~---~~~~i~~I~~~sLdlfl~~AlmsL~L~~l-~~~a~Plliil~~q~i~~ 317 (398)
T TIGR00210 242 ALMLPTFVWCLFVGVILRNPLSFKKFPWV---AERAVSVIGNVSLSLFLAIALMSLQLWEL-ADLAGPIALILLVQVMFM 317 (398)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999876542212 22344555555555555444456777777 344555555555555444
Q ss_pred H-HHHHHHHhCCCCChhhHHHHhhccccc
Q psy3081 289 I-LITVLVAVGSSLNLKEKLFVAFSWMAK 316 (327)
Q Consensus 289 ~-~~~~l~~~~~~~~~~e~~~~~~~~~pr 316 (327)
. ...++..+..+.+ .|+..++-+..+.
T Consensus 318 ~l~~~fv~fr~mg~~-ydaaV~~ag~~G~ 345 (398)
T TIGR00210 318 ALYAIFVTFRLMGKD-YDAAVLCAGHCGF 345 (398)
T ss_pred HHHHHHHhHHhccch-HHHHHHhcccccc
Confidence 4 4445556667777 7777765555543
No 32
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=96.77 E-value=0.086 Score=44.81 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHHHHH-HhcCCcHHHHHHHHhHhhccchhhhH-HHH
Q psy3081 30 MALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVIATH-YFLNLPWIWAFLTGSIFAAVSPAVVV-PCL 104 (327)
Q Consensus 30 ~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~-~~~~~~~~~alllg~~ls~Ts~~v~~-~~l 104 (327)
+.+...||..|+++|++++++..|+.-.+. .+.+.... +.++... ..++. ......|.++.+.+|.... +..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~-~~l~~~~~i~Plla~~l~~~~~~~--~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLL-IGLLAQFLIMPLLAFGLAWLLLPL--SPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHH-HHTT----HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHhcCCcHHHHHHH
Confidence 467889999999999999998876654432 12222222 1222222 34444 3445666666666664433 333
Q ss_pred HHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3081 105 FKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLY--NIVLGPSSLIIGLAFGIIWGSLAKVVPE 180 (327)
Q Consensus 105 ~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~--~~~~~~~~i~~g~~~g~~~g~l~~~~~~ 180 (327)
.++ .+| |. +...+...++...+.........+..++..... .......+....+++-...|.+.|+..+
T Consensus 79 t~l-~~G-----d~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 79 TYL-AGG-----DV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHH-TT-------H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHH-hCC-----Cc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 332 333 33 356666778888888777777766554332111 1223333444444444556666665544
No 33
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.41 E-value=0.75 Score=42.80 Aligned_cols=103 Identities=13% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH---HHHH-HHHHhcCCcHHHHHHHHhHhhccchhhhHHHHH
Q psy3081 30 MALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI---SVVI-ATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLF 105 (327)
Q Consensus 30 ~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~-~~~~~~~~~~~~alllg~~ls~Ts~~v~~~~l~ 105 (327)
+.+.++||-.|+++++++++|..|+.-... .+...... +.++ +++.+++.+.. +..|.++.+..|..+.+..-
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~-~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~ 123 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLI-LSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVW 123 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHH
Confidence 456689999999999999998766654321 22222221 1222 33333455543 77888887777766555443
Q ss_pred HhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHH
Q psy3081 106 KLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVH 141 (327)
Q Consensus 106 ~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~ 141 (327)
..-.|| ++. .-.....+|...+.+......
T Consensus 124 T~lAkG-----nva-lsv~lt~~stLl~~~~~P~l~ 153 (328)
T TIGR00832 124 NQLAKG-----DPE-YTLVLVAVNSLFQVFLYAPLA 153 (328)
T ss_pred HHHcCC-----CHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333444 433 445555788888876665544
No 34
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.34 E-value=0.0078 Score=51.33 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=65.3
Q ss_pred hhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCCh-----HHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 5 LFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDP-----PALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 5 ~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~-----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
..+++|+++|-......+..+...+..+..++|..|.|+.. +++|+..++.+.+.+...+-+. ..+.+...+++
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSl-lgg~l~~~ll~ 81 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSL-LGGLLASLLLG 81 (191)
T ss_pred eeHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 46788999997765543444788999999999999998854 3566666788877776665554 45566667779
Q ss_pred CcHHHHHHHHhHhh
Q psy3081 80 LPWIWAFLTGSIFA 93 (327)
Q Consensus 80 ~~~~~alllg~~ls 93 (327)
+|+.+++.+++-..
T Consensus 82 ~~~~~~lav~sG~G 95 (191)
T PF03956_consen 82 LSLKESLAVASGFG 95 (191)
T ss_pred CCHHHHHHHHccCc
Confidence 99999998876544
No 35
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.91 E-value=0.81 Score=42.26 Aligned_cols=142 Identities=12% Similarity=0.094 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHH---HHHHHHhcCCcHHHHHHHHhHhhccchhhhH
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV---VIATHYFLNLPWIWAFLTGSIFAAVSPAVVV 101 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~ 101 (327)
|.....++..+.|..|+.+|.+++++..++.-.... ....++... +.....+.+......+..|....+.-|.++.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~ 108 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVS 108 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhh
Confidence 467788899999999999999999986665433222 222332222 2222223321112336666555555554322
Q ss_pred H-H-HHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcC-Cc--hHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy3081 102 P-C-LFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFS-ED--SLLYN-IVLGPSSLIIGLAFGIIWGSL 174 (327)
Q Consensus 102 ~-~-l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~-~~--~~~~~-~~~~~~~i~~g~~~g~~~g~l 174 (327)
+ + +.+ ..+| + ....+..+.++...++++......+..+ ++ .+..+ +.+....+..-.++|.+..+.
T Consensus 109 S~v~~T~-~AgG-----N-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~ 180 (313)
T PF13593_consen 109 SSVVLTR-LAGG-----N-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRW 180 (313)
T ss_pred HHHHHHH-HcCC-----C-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 222 2232 2 2456778888899998888877765552 22 12222 334555555555555554433
No 36
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.89 E-value=1.4 Score=40.49 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=75.5
Q ss_pred hhhhhhhheeccccccccccH--------HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy3081 4 HLFSLFGAFIGGNSEMVLDEF--------SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH 75 (327)
Q Consensus 4 ~~~ll~GillGp~~~~~~~~~--------~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (327)
..-++.|+++++...+..+.. +.+-+.|+++ .|.+++++++.+.+.+........+..+......+..
T Consensus 30 ~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~ 105 (305)
T PF03601_consen 30 LIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGR 105 (305)
T ss_pred HHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999996222222211 2455555554 5999999999999988777766666666544444443
Q ss_pred HhcCCcHHHHHHHHh---HhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHH
Q psy3081 76 YFLNLPWIWAFLTGS---IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHS 142 (327)
Q Consensus 76 ~~~~~~~~~alllg~---~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~ 142 (327)
-.+++|...+.++|+ ++.+++...+.|+++ .+ ++++. ...+.-.+=+..+++++..+..
T Consensus 106 r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~---a~----~~~~a-~ava~V~lfg~vam~~~P~l~~ 167 (305)
T PF03601_consen 106 RLFGLDRKLAILIAAGTSICGASAIAATAPVIK---AK----EEDVA-YAVATVFLFGTVAMFLYPLLGH 167 (305)
T ss_pred HHhCCCHHHHHHHHhhcccchHHHHHHHccccc---CC----CCcee-eeehHHHHHHHHHHHHHHHHHH
Confidence 678999999999985 555555544555542 22 12322 2233333444555555555444
No 37
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.10 E-value=1.3 Score=40.79 Aligned_cols=132 Identities=15% Similarity=0.273 Sum_probs=79.8
Q ss_pred hhhhhhheeccccccc--------cccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhh---hhchhHHHHHHHHHHHH
Q psy3081 5 LFSLFGAFIGGNSEMV--------LDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVL---KLGLVPWAVEAISVVIA 73 (327)
Q Consensus 5 ~~ll~GillGp~~~~~--------~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~---~l~~~~~~~~~~~~~~~ 73 (327)
+-++.|+.+|-+.++. ....+.--.+++.+.|+--=.++|++++++..++.= ..-....++.=+....+
T Consensus 22 l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~l 101 (342)
T COG0798 22 LAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFAL 101 (342)
T ss_pred HHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999766551 123346667888888888888999999987555422 22222333322233344
Q ss_pred HHHhcCCcHHHHHHHHhHhhccchhhhH-HHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHc
Q psy3081 74 THYFLNLPWIWAFLTGSIFAAVSPAVVV-PCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMF 145 (327)
Q Consensus 74 ~~~~~~~~~~~alllg~~ls~Ts~~v~~-~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~ 145 (327)
++..++. ...+..|.++-.-+|-+.+ .+..++. ++ =.+.....-.+||...+++++......-
T Consensus 102 a~~fl~~--~pey~~GlILlglApC~aMVivw~~La-~G------d~~~tlv~Va~n~l~qiv~y~~~~~~~l 165 (342)
T COG0798 102 AWFFLPD--EPEYRAGLILLGLAPCIAMVIVWSGLA-KG------DRELTLVLVAFNSLLQIVLYAPLGKFFL 165 (342)
T ss_pred HHHHhCC--CHHHHHHHHHHHhhhhHHHHHHHHhhc-cC------cHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 2267777777766665443 2333443 22 1245566778999999999987665443
No 38
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.98 E-value=2.8 Score=38.18 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCCChHHHHhhhhhh--hhhchh--HHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhhhHH-HH
Q psy3081 30 MALVVILTRAGLDLDPPALRRLWSTV--LKLGLV--PWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVP-CL 104 (327)
Q Consensus 30 ~gl~lllF~~Gle~~~~~l~~~~~~~--~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~~-~l 104 (327)
..+.+.||..|+.++.+++++..++. ...+.. -.+.|.. ++.....++.+ .....|..+.+..|..+.. ++
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll--a~~l~~~~~l~--~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT--GFLLAKVFKLP--PELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH--HHHHHHHhCCC--HHHHHHHHheeeCCCchHHHHH
Confidence 34889999999999999999877643 222222 2234432 23333456655 3445666666666654443 33
Q ss_pred HHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHH
Q psy3081 105 FKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSF 143 (327)
Q Consensus 105 ~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~ 143 (327)
.+. .++ +.+ ...+...++...+++...+...+
T Consensus 88 t~~-~~g---n~~---la~~~~~~stlls~vt~Pl~l~~ 119 (286)
T TIGR00841 88 TYL-LKG---DMA---LSISMTTCSTLLALGMMPLLLYI 119 (286)
T ss_pred HHH-hCC---CHh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 332 222 223 33344445666665555554433
No 39
>COG2431 Predicted membrane protein [Function unknown]
Probab=94.36 E-value=0.1 Score=46.35 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=61.6
Q ss_pred chhhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCC---hH--HHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 3 KHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLD---PP--ALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~---~~--~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
...+.+.|+++|-......+..+...|..+.+++|.+|.++. .. +.+=| |+......... ++-...+..+.++
T Consensus 109 ~~~~vl~g~~~G~l~~~~~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i~i-lssliGG~iaa~~ 186 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFLNFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFITL-LSSLIGGLIAAFL 186 (297)
T ss_pred HHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHHHH-HHHHHHHHHHHHH
Confidence 356778888888776665556778899999999999999888 22 22222 44444444444 3445567777888
Q ss_pred cCCcHHHHHHHHhHhh
Q psy3081 78 LNLPWIWAFLTGSIFA 93 (327)
Q Consensus 78 ~~~~~~~alllg~~ls 93 (327)
+++|+.+++.+++-..
T Consensus 187 l~lpl~~~lAmasG~G 202 (297)
T COG2431 187 LDLPLTTGLAMASGFG 202 (297)
T ss_pred HhccHHHHHHHHhccc
Confidence 8999999887765443
No 40
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.11 E-value=0.27 Score=44.90 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=58.8
Q ss_pred hhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHH
Q psy3081 5 LFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84 (327)
Q Consensus 5 ~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (327)
+-++.|+++|....+..+..+.=..+++.+..|..|.++|++++.+.+.+-+.++...+..+........ -+++.+...
T Consensus 171 lpILiGmilGNld~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rllg~~~~~ 249 (312)
T PRK12460 171 LPLVLGMILGNLDPDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLVGGTGIA 249 (312)
T ss_pred HHHHHHHHHhccchhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHhCCChhH
Confidence 5677888888733221222221123478888999999999999999999988888877777655444444 456888888
Q ss_pred HHHHH
Q psy3081 85 AFLTG 89 (327)
Q Consensus 85 alllg 89 (327)
+.++|
T Consensus 250 g~li~ 254 (312)
T PRK12460 250 GAAAS 254 (312)
T ss_pred HHHHH
Confidence 88877
No 41
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.00 E-value=5.3 Score=37.25 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=73.7
Q ss_pred hhhhhhheeccccc-ccccc----H----HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy3081 5 LFSLFGAFIGGNSE-MVLDE----F----SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH 75 (327)
Q Consensus 5 ~~ll~GillGp~~~-~~~~~----~----~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (327)
.=++.|+++|.... +..+. . +.+-+.++++ .|.+++++++.+.+.+.+......+..+.........
T Consensus 36 ~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~ 111 (335)
T TIGR00698 36 LAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGS 111 (335)
T ss_pred HHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888877431 11111 1 2445566554 5999999999999988876656555544443333443
Q ss_pred HhcCCcHHHHHHHHh---HhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy3081 76 YFLNLPWIWAFLTGS---IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFM 144 (327)
Q Consensus 76 ~~~~~~~~~alllg~---~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~ 144 (327)
-.+++|...+.++|+ ++.+++...+.|+++ .+ +++. ....+.-.+=+..++.++..+....
T Consensus 112 k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~---A~----~~~~-a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 112 SRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK---AE----KEKV-SVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHhCCChhHHHHHHcchhHHHHHHHHHhccccC---CC----ccce-eeeehHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999984 555555555555542 12 1222 2223333344555566665555443
No 42
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=93.68 E-value=6.4 Score=37.15 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=63.1
Q ss_pred HHHHHhh---cCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH
Q psy3081 202 IFASEHL---GLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAA 278 (327)
Q Consensus 202 ~~~ae~~---g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~ 278 (327)
+.+.+.+ ++....+..+++.|.+.+|..++.++++ -.++..+.+.+....+|-.+.=+++.+.++.. .+...+
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~---v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~ 310 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR---VFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLL 310 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc---ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHH
Confidence 3444444 3456788999999999999987654221 12234566777777777666666777776632 333444
Q ss_pred HHHHHHHHHHHH-HHHHHHhCCCCChhhHHHH
Q psy3081 279 IIVIGGVVTRIL-ITVLVAVGSSLNLKEKLFV 309 (327)
Q Consensus 279 ~~~~~~~i~r~~-~~~l~~~~~~~~~~e~~~~ 309 (327)
+++.+-.+.-.. ..+...|..|.|+.++..+
T Consensus 311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~ 342 (404)
T COG0786 311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVLA 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHh
Confidence 444444444333 3344457778888777764
No 43
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.67 E-value=1.2 Score=40.93 Aligned_cols=114 Identities=14% Similarity=0.043 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHhh-hhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc
Q psy3081 194 LLGGGLIVIFASEH--LGLGGAGPLGVIASAFVSSY-SWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD 270 (327)
Q Consensus 194 ~l~~~~~~~~~ae~--~g~~~s~~la~~i~g~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~ 270 (327)
+..++...+.+++. ...+.++.+=+++.|+.++| .++. .++.++-.+.-.+.+...==+..|.+++++++
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~------~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i- 78 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGL------PARFKPGIKFSSKKLLRLGIVLLGFRLSFSDI- 78 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCC------cHHHHhHHHHHHHHHHHHHHHHHCccccHHHH-
Confidence 34445555555552 12356777777888888887 4432 12233223322234444444566999999987
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081 271 PQIVSIAAIIVIGGVV-TRILITVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 271 ~~~~~~~~~~~~~~~i-~r~~~~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
.+..+..+......+. .=..+.+++.+..|.|+|.+..++.|..
T Consensus 79 ~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~Gts 123 (305)
T PF03601_consen 79 LALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTS 123 (305)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 3333434444333333 3344445555889999999999988765
No 44
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.07 E-value=0.55 Score=39.26 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=54.1
Q ss_pred hhhhheecccccc-----ccccHHHHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhc
Q psy3081 7 SLFGAFIGGNSEM-----VLDEFSSYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFL 78 (327)
Q Consensus 7 ll~GillGp~~~~-----~~~~~~~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 78 (327)
+++|+++|-.... ..+..+.+.|+++.+.++..|++--++ .+||++.+...++..-..++........++++
T Consensus 30 L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~ 109 (169)
T PF06826_consen 30 LFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLF 109 (169)
T ss_pred HHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5566666654321 123446899999999999999988765 45566666666677766677666666666688
Q ss_pred CCcHHH
Q psy3081 79 NLPWIW 84 (327)
Q Consensus 79 ~~~~~~ 84 (327)
++|+..
T Consensus 110 ~l~~~~ 115 (169)
T PF06826_consen 110 KLNPGI 115 (169)
T ss_pred CCCHHH
Confidence 888654
No 45
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.32 E-value=1.1 Score=36.74 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred hhhhhhheecccccc-----c--cccHHHHHHHHHHHHHHHhccCCChHHHH---hhh-hhhhhhchhHHHHHHHHHHHH
Q psy3081 5 LFSLFGAFIGGNSEM-----V--LDEFSSYRKMALVVILTRAGLDLDPPALR---RLW-STVLKLGLVPWAVEAISVVIA 73 (327)
Q Consensus 5 ~~ll~GillGp~~~~-----~--~~~~~~l~~~gl~lllF~~Gle~~~~~l~---~~~-~~~~~l~~~~~~~~~~~~~~~ 73 (327)
.-+++|+++|-.... . .+..+.+.|+++.++++..|++--.+-+. |+. .....++....+++.......
T Consensus 26 G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~ 105 (154)
T TIGR01625 26 GVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVA 105 (154)
T ss_pred HHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888765532 1 12345899999999999999998876544 433 122223333344454556667
Q ss_pred HHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081 74 THYFLNLPWIWAFLTGSI-FAAVSPAV 99 (327)
Q Consensus 74 ~~~~~~~~~~~alllg~~-ls~Ts~~v 99 (327)
.++.+++|+.. ..|.+ =+-|+++.
T Consensus 106 ~~~~~~~~~~~--~~G~~aGa~T~tpa 130 (154)
T TIGR01625 106 LIKLLRINYAL--TAGMLAGATTNTPA 130 (154)
T ss_pred HHHHhCCCHHH--HHHHHhccccChHH
Confidence 77788988753 34443 34445443
No 46
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.01 E-value=2.1 Score=39.50 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHH
Q psy3081 211 GGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRIL 290 (327)
Q Consensus 211 ~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~ 290 (327)
|.++..=+.+.|+++++..++ .++...-++.-.+.+..+==+..|.+++++++ .+.....+.+....+..-++
T Consensus 36 ~l~al~lAIllGi~l~~l~~~------~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i-~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 36 GLSALTLAILLGILLGILPQI------PAQTSAGITFSSKKLLRLGIVLLGFRLTLSDI-ADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred CchHHHHHHHHHHHHhccccc------hhhhccchhhhHHHHHHHHHHHHcceeeHHHH-HHcCccHHHHHHHHHHHHHH
Confidence 444666667777777743321 11222222222233333333455999999988 33445556666666677777
Q ss_pred HHHHHHhCCCCChhhHHHHhhccc
Q psy3081 291 ITVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 291 ~~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
.++...+..|+|+|++..++.|..
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~Gss 132 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSS 132 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccch
Confidence 777777788999999999988755
No 47
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=90.31 E-value=5.4 Score=37.19 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhc---CCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccch
Q psy3081 195 LGGGLIVIFASEHLG---LGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDP 271 (327)
Q Consensus 195 l~~~~~~~~~ae~~g---~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~ 271 (327)
..++.....+++.-. .+.|+.+=++..|+.++|....+. +++...-.+-..+.+.-.==+..|.+++++++ .
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~----~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i-~ 85 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQR----DEEKKRGVLFAKPFLLRIGITLYGFRLTFPYI-A 85 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccc----hhhccchHHHHHHHHHHHHHHHHCccccHHHH-H
Confidence 334445555554321 246677777788888888542111 11111111111111111112345999999988 4
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHhCCCCChhhHHHHhhccc
Q psy3081 272 QIVSIAAIIVIGGVVTRILI-TVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 272 ~~~~~~~~~~~~~~i~r~~~-~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
+..+..+......+..=+.. .+++.+..|.|++.+..++.|..
T Consensus 86 ~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~Gts 129 (335)
T TIGR00698 86 DVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSS 129 (335)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchh
Confidence 44455555444444444444 44555778999999999987654
No 48
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=90.18 E-value=15 Score=33.92 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc
Q psy3081 191 IIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD 270 (327)
Q Consensus 191 ~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~ 270 (327)
...+...+.....+++.++++.+.+++.++.+.........+ .+..+.+.. ..+-+.=..+|.+++.+.+.
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~------~~~P~~l~~---~aqv~iG~~iG~~f~~~~l~ 227 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS------FSLPPWLVN---AAQVLIGASIGSRFTRETLR 227 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC------CCCCHHHHH---HHHHHHHHHHHccccHHHHH
Confidence 344445666777888888888888899988887776542211 111121222 22333334568888887663
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhh
Q psy3081 271 --PQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320 (327)
Q Consensus 271 --~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~ 320 (327)
.+.....+......+..=....++..+..+.|+.+.++. +.|-|--|
T Consensus 228 ~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~e 276 (318)
T PF05145_consen 228 ELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAE 276 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHH
Confidence 234455555566666677777778888889999988876 56655444
No 49
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.89 E-value=6.1 Score=39.97 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=61.5
Q ss_pred hhhhheecccccc--ccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHH
Q psy3081 7 SLFGAFIGGNSEM--VLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIW 84 (327)
Q Consensus 7 ll~GillGp~~~~--~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (327)
.++|++++.+-.. ..+..+.+.++.+.++....|+++|++.+.+++.....+.+...+.-.. ..+.....+++++..
T Consensus 244 FlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~-~~~~~~~~~g~~~~~ 322 (601)
T PRK03659 244 FIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGL-VLYLLARLYGLRSSE 322 (601)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHH
Confidence 4567777653211 1123446778889999999999999999988876555443333333333 334445578999999
Q ss_pred HHHHHhHhhccch
Q psy3081 85 AFLTGSIFAAVSP 97 (327)
Q Consensus 85 alllg~~ls~Ts~ 97 (327)
++.+|..+++...
T Consensus 323 al~~g~~L~~~Ge 335 (601)
T PRK03659 323 RMQFAGVLSQGGE 335 (601)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988865
No 50
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.61 E-value=4.6 Score=41.04 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081 190 RIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL 269 (327)
Q Consensus 190 ~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l 269 (327)
+..+.+..+.+...+++.+ +.+.+++-+++|+++|-..- ++ .++ .+.++.+..+-..++-+.+|+++|++.+
T Consensus 9 ~~~~~l~~a~i~~~l~~rl--~lp~vlgyilaGillGP~~l--g~--i~~--~~~i~~laelGvv~LlF~iGLEl~~~~l 80 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRL--GLGSVLGYLIAGCIIGPWGL--RL--VTD--VESILHFAEFGVVLMLFVIGLELDPQRL 80 (621)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhCcccc--cC--CCC--HHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 3445555666667777877 55689999999999884221 10 111 2235566677777888889999999977
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081 270 DPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
.. ..-.....-...++.=....+...+..+++|.+++++|.+..
T Consensus 81 ~~-~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la 124 (621)
T PRK03562 81 WK-LRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLA 124 (621)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 21 111111111111111112222333445789999988876543
No 51
>PRK03818 putative transporter; Validated
Probab=88.47 E-value=2.6 Score=42.09 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=51.2
Q ss_pred hhhhhheecc----ccccccc-cHHHHHHHHHHHHHHHhccCCChHHH---HhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 6 FSLFGAFIGG----NSEMVLD-EFSSYRKMALVVILTRAGLDLDPPAL---RRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 6 ~ll~GillGp----~~~~~~~-~~~~l~~~gl~lllF~~Gle~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
-+++|+++|- .+....+ ..+.+.++|+.+++|..|++.-++-+ ||++.+...++.+-.+.+.. .++..+++
T Consensus 36 ~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (552)
T PRK03818 36 VLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGL-VTAILHKL 114 (552)
T ss_pred HHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3567787776 3322222 23469999999999999999988754 44444555555555555543 35566778
Q ss_pred cCCcHHH
Q psy3081 78 LNLPWIW 84 (327)
Q Consensus 78 ~~~~~~~ 84 (327)
+++|+..
T Consensus 115 ~~~~~~~ 121 (552)
T PRK03818 115 FGIPLPV 121 (552)
T ss_pred hCCCHHH
Confidence 8988653
No 52
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.47 E-value=1.6 Score=40.02 Aligned_cols=83 Identities=7% Similarity=-0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081 218 VIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV 297 (327)
Q Consensus 218 ~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~ 297 (327)
+++.|++.||.. ++..+.+++-.++..|++-+..|.++|++++ .+....++++-+..++.=....+...+
T Consensus 172 pILiGmilGNld---------~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I-~~~G~~GIlL~v~vv~~t~~~~~~i~r 241 (312)
T PRK12460 172 PLVLGMILGNLD---------PDMRKFLTKGGPLLIPFFAFALGAGINLSML-LQAGLAGILLGVLVTIVTGFFNIFADR 241 (312)
T ss_pred HHHHHHHHhccc---------hhhHHHHhccceEeHHHHHHHhcCCeeHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666632 2233444444445889999999999999988 334445555544444555555555556
Q ss_pred CCCCChhhHHHHh
Q psy3081 298 GSSLNLKEKLFVA 310 (327)
Q Consensus 298 ~~~~~~~e~~~~~ 310 (327)
..|.+.+....++
T Consensus 242 llg~~~~~g~li~ 254 (312)
T PRK12460 242 LVGGTGIAGAAAS 254 (312)
T ss_pred HhCCChhHHHHHH
Confidence 6688888888876
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=87.78 E-value=2.6 Score=42.23 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred hhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhh---hhhhhchhHHHHHHHHHHHHHHHhcCCcH
Q psy3081 6 FSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWS---TVLKLGLVPWAVEAISVVIATHYFLNLPW 82 (327)
Q Consensus 6 ~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
=+++|+++|-.+.. ..+.+.++++.+++|..|++.-++-++.-+| +...+++.-++.. ..+++...+++|+|.
T Consensus 41 vLfvgl~~G~~g~~---i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~-~~~~~~~~~~~g~~~ 116 (562)
T TIGR03802 41 SLIVAVLIGQLGIQ---IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSG-LITVYALAKIFGLDK 116 (562)
T ss_pred HHHHHHHHHhcCCC---CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence 35667777765442 3346889999999999999999876554443 4444444433333 445566677888875
Q ss_pred HH--HHHHHhH
Q psy3081 83 IW--AFLTGSI 91 (327)
Q Consensus 83 ~~--alllg~~ 91 (327)
.. .++-|+.
T Consensus 117 ~~~~Gl~aGal 127 (562)
T TIGR03802 117 GTAAGLAAGGL 127 (562)
T ss_pred HHHHHHHhchh
Confidence 43 3444443
No 54
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.66 E-value=7.7 Score=38.83 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP 97 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~ 97 (327)
.+.++.+.++....|+++|++.+.+++.....+.....+.-. ..+......+|+++..++.+|..+++-+.
T Consensus 276 ~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~-~~~~~~~~~~g~~~~~a~~~gl~l~~~Ge 346 (558)
T PRK10669 276 PLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKS-LAAFFLVRLFGHSRRTALTIAASLAQIGE 346 (558)
T ss_pred hHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCChhhHHHHHHHHhcccc
Confidence 456777888888999999999988765443332222222222 23344455679999999999999987665
No 55
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=86.03 E-value=5.9 Score=35.52 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHH
Q psy3081 201 VIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAII 280 (327)
Q Consensus 201 ~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~ 280 (327)
...+++.+ +.+..++-+++|+.+|...-+. .++ ++.++.+.++-..++....|.++|++.+.. .......+
T Consensus 7 ~~~l~~~l--~lP~~v~~il~GillGp~~lg~----i~~--~~~~~~l~~igl~~llF~~Gl~~d~~~l~~-~~~~~~~~ 77 (273)
T TIGR00932 7 AVPLSRRL--GIPSVLGYLLAGVLIGPSGLGL----ISN--VEGVNHLAEFGVILLMFLIGLELDLERLWK-LRKAAFGV 77 (273)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHhCcccccC----CCC--hHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHH
Confidence 34556666 5568888888898888532111 111 124566677777788889999999998732 22222222
Q ss_pred HHHHHHHH-HHHHHHHHhCCCCChhhHHHHhhccc
Q psy3081 281 VIGGVVTR-ILITVLVAVGSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 281 ~~~~~i~r-~~~~~l~~~~~~~~~~e~~~~~~~~~ 314 (327)
....++.= ....+...+..+.++.++..+|....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls 112 (273)
T TIGR00932 78 GVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILA 112 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22222222 22223233445788899988877544
No 56
>PRK05326 potassium/proton antiporter; Reviewed
Probab=85.31 E-value=12 Score=37.55 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHH
Q psy3081 198 GLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIA 277 (327)
Q Consensus 198 ~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~ 277 (327)
+..+..+++.+ +.+.+++-+..|+.+|...... .+ .+ + .+..+.+.++..+++....|.++|++.+.. .+...
T Consensus 18 ~~~~~~l~~r~--~~P~ll~~il~GillGp~~lg~-i~-~~-~-~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~-~~~~~ 90 (562)
T PRK05326 18 SILASRLSSRL--GIPSLLLFLAIGMLAGEDGLGG-IQ-FD-N-YPLAYLVGNLALAVILFDGGLRTRWSSFRP-ALGPA 90 (562)
T ss_pred HHHHHHHHHHc--CCcHHHHHHHHHHHhCccccCC-cc-cC-c-HHHHHHHHHHHHHHHHHcCccCCCHHHHHH-HHHHH
Confidence 33444455555 4456777777777777422110 00 11 1 123456677888888899999999998833 33444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhCCCCChhhHHHHhhcccc
Q psy3081 278 AIIVIGGVVTRILI-TVLVAVGSSLNLKEKLFVAFSWMA 315 (327)
Q Consensus 278 ~~~~~~~~i~r~~~-~~l~~~~~~~~~~e~~~~~~~~~p 315 (327)
..+....++.=... .+...+..+++|.+++++|....+
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~ 129 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGS 129 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhcc
Confidence 33333332222222 233344568899999999775543
No 57
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=85.13 E-value=7.7 Score=37.11 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhh-hhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081 191 IIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSY-SWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL 269 (327)
Q Consensus 191 ~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l 269 (327)
....+..+.......+.+++ ++++|-+++|.++|. .... ..++ ++.++.+.++=.-++...+|++.|++.+
T Consensus 11 ~~iiL~~a~i~~~l~~rl~l--p~vlg~llaGiilGp~~~~~---~~~~---~~~i~~laelGvi~LlF~~GLE~~~~~l 82 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGL--PPVLGYLLAGIILGPWGLLL---IIES---SEIIELLAELGVVFLLFLIGLEFDLERL 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHhcCcccccc---cCCc---hHHHHHHHHHhHHHHHHHHHHCcCHHHH
Confidence 34444455555577788754 689999999999996 1110 0112 2334445555555667788999999988
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHHh-CCCCChhhHHHHhhccc
Q psy3081 270 DPQIVSI-AAIIVIGGVVTRILITVLVAV-GSSLNLKEKLFVAFSWM 314 (327)
Q Consensus 270 ~~~~~~~-~~~~~~~~~i~r~~~~~l~~~-~~~~~~~e~~~~~~~~~ 314 (327)
.. .... ........+..=+........ ..++++++++++|..+.
T Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~ 128 (397)
T COG0475 83 KK-VGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA 128 (397)
T ss_pred HH-hchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 32 2222 222222222222122211111 47899999999987654
No 58
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=84.84 E-value=34 Score=32.00 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy3081 27 YRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLT 88 (327)
Q Consensus 27 l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alll 88 (327)
+.++-...+.--.=+.+|.+.++|...+.....+.+.+... ..+.....++|+++..+++.
T Consensus 26 Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~~~~ 86 (347)
T TIGR00783 26 FLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAV-IVGILVGTLFGLGFDHSLMY 86 (347)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHhHhhhe
Confidence 34455555555556799999999999988877666666554 45556677899998887754
No 59
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=84.38 E-value=6.1 Score=36.46 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=53.2
Q ss_pred hhhheecccccc----ccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHH-HHHHHHHHHHHHHhcCCcH
Q psy3081 8 LFGAFIGGNSEM----VLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPW-AVEAISVVIATHYFLNLPW 82 (327)
Q Consensus 8 l~GillGp~~~~----~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (327)
+.|+++...+.. ..+..+.+++....+-|+..|..++.++.+++++........-. +.|.. .......++.+.
T Consensus 189 i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i--~~~~~~~~~l~~ 266 (321)
T TIGR00946 189 LLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAV--MAGISKLIGLRG 266 (321)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHH--HHHHHHHhCCCh
Confidence 445555443332 12345689999999999999999999888877666654444322 33332 223334566553
Q ss_pred HHHHHHHhHhhccchhhhHHHHH
Q psy3081 83 IWAFLTGSIFAAVSPAVVVPCLF 105 (327)
Q Consensus 83 ~~alllg~~ls~Ts~~v~~~~l~ 105 (327)
.. .-...+.++.-+++...++.
T Consensus 267 ~~-~~~~vl~aa~P~a~~~~i~A 288 (321)
T TIGR00946 267 LE-LSVAILQAALPGGAVAAVLA 288 (321)
T ss_pred HH-HHHHHHHHcCChhhHHHHHH
Confidence 22 22223344444444444443
No 60
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=84.37 E-value=21 Score=29.21 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccc--hhhH
Q psy3081 197 GGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELD--PQIV 274 (327)
Q Consensus 197 ~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~--~~~~ 274 (327)
.+.....+.+.++++....+|.++.+......... +.+..+.... ..+.+.=..+|.+++.+.+. .+.+
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~------~~~~P~~~~~---~~qviiG~~iG~~f~~~~l~~~~~~~ 76 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGL------EITLPPWLLA---LAQVVIGILIGSRFTREVLAELKRLW 76 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCc------cCCCCHHHHH---HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34445555677777777778888888776543211 1112222222 23333334568998887763 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHhhccccchhhh
Q psy3081 275 SIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFSWMAKASVQ 320 (327)
Q Consensus 275 ~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v~ 320 (327)
...+...+..+..=....++..+..++|+.++++. ..|-|--|
T Consensus 77 ~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La---~~PGGl~~ 119 (156)
T TIGR03082 77 PAALLSTVLLLALSALLAWLLARLTGVDPLTAFLA---TSPGGASE 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCchHHH
Confidence 44555555666677777788888899999999755 56655433
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=82.13 E-value=17 Score=37.85 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCChhhHHHHhhccccchhh
Q psy3081 248 FWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAV-G-SSLNLKEKLFVAFSWMAKASV 319 (327)
Q Consensus 248 ~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~-~-~~~~~~e~~~~~~~~~pr~~v 319 (327)
+..+..++--+..|.+++...+.. .|.....++...+..-.+.+.+..+ . .+++|.+++.+|-...|-..|
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr-~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK-HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 566677777778899999998833 3333333333333333333333332 3 689999999999877775433
No 62
>PRK04972 putative transporter; Provisional
Probab=81.80 E-value=6.4 Score=39.47 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=47.5
Q ss_pred hhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHH---HhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHH
Q psy3081 7 SLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPAL---RRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWI 83 (327)
Q Consensus 7 ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
+++|+++|-.+.. ..+.+.++++.+++|..|++.-++-+ ||++.+...++...++.+.. ++....+++++++.
T Consensus 44 L~vgl~~g~~~~~---~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 119 (558)
T PRK04972 44 LVVSLLLGQQHFS---INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALV-IALGLGKLFGWDIG 119 (558)
T ss_pred HHHHHHHHhCCCC---CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHH
Confidence 4566666654432 23456799999999999999987754 44445555555555555433 34445567888765
Q ss_pred H
Q psy3081 84 W 84 (327)
Q Consensus 84 ~ 84 (327)
.
T Consensus 120 ~ 120 (558)
T PRK04972 120 L 120 (558)
T ss_pred H
Confidence 4
No 63
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=81.74 E-value=6.9 Score=39.25 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081 26 SYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSI-FAAVSPAV 99 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~-ls~Ts~~v 99 (327)
.+.++|+.++++..|++--.+ .+|+++.+...++..-.+++........++.+++++.. ..|.+ =+-|+|+.
T Consensus 448 ~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~~aG~~t~t~~ 523 (562)
T TIGR03802 448 LLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPAL--LLGALAGARTATPA 523 (562)
T ss_pred HHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHhhccCCCcHH
Confidence 799999999999999988875 44555666666666666666555666776788888663 44443 34455543
No 64
>PRK04972 putative transporter; Provisional
Probab=80.58 E-value=7.9 Score=38.80 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081 25 SSYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSI-FAAVSPAV 99 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~-ls~Ts~~v 99 (327)
..++|+|+.+++...|++--.+ .+++++.+....+..-.+++.....+++++.+++++.. .+|++ =+-|+|+.
T Consensus 442 ~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~~--~~G~~aG~~t~~~~ 518 (558)
T PRK04972 442 NMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRAL--LFGAIMGARTCAPA 518 (558)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHhCCCCCcHH
Confidence 3899999999999999987765 44555666666666666677666777888899998773 44543 44556554
No 65
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=80.55 E-value=47 Score=30.53 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=77.4
Q ss_pred hhhhhhheeccccccccc---cHH-HH---HHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHh
Q psy3081 5 LFSLFGAFIGGNSEMVLD---EFS-SY---RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYF 77 (327)
Q Consensus 5 ~~ll~GillGp~~~~~~~---~~~-~l---~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 77 (327)
..++.|.++--..++.++ ... -+ +.--+.+++|-.|-++|+++..+..||-..+.+.=+.+... .++....+
T Consensus 17 VPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~-lgl~~~~~ 95 (314)
T PF03812_consen 17 VPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGAL-LGLLVGKF 95 (314)
T ss_pred HHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 445566665544444322 111 11 13446788999999999999999888887776666665543 44555556
Q ss_pred cCCc-------H-HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHH
Q psy3081 78 LNLP-------W-IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFG 138 (327)
Q Consensus 78 ~~~~-------~-~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~ 138 (327)
+|.+ + ..++.+=++++.+.++.=.+...|+.+ ++|. -..+...+||.=-+.++.
T Consensus 96 fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-----~~D~--gA~~i~sl~~GPf~tMl~ 157 (314)
T PF03812_consen 96 FGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-----EEDV--GAFSILSLNDGPFFTMLA 157 (314)
T ss_pred cCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-----HHHh--HHHHHHHhhhhHHHHHHH
Confidence 6543 1 356666677888888876676655443 3343 334556677776655543
No 66
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=79.61 E-value=60 Score=31.17 Aligned_cols=61 Identities=7% Similarity=-0.011 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy3081 27 YRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLT 88 (327)
Q Consensus 27 l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alll 88 (327)
+-++-...+.--.=+.+|.+.++|...|.....+.+.+... +.+.....++|+++..+++.
T Consensus 95 Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~-~~g~lvG~l~G~~~~~~i~~ 155 (414)
T PF03390_consen 95 FLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAF-LLGGLVGMLFGYSFKDAIFY 155 (414)
T ss_pred hHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHH
Confidence 33455555555556799999999999988877677666554 44556677899998887755
No 67
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.42 E-value=53 Score=30.49 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=65.3
Q ss_pred chhhhhhhheeccccccc------cc-cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH
Q psy3081 3 KHLFSLFGAFIGGNSEMV------LD-EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH 75 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~------~~-~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (327)
+.+-++.|+++|...... .+ ..+.+-++|++++ |.+++++++.+.+.+.+.+.......++...... .
T Consensus 40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~l-g 114 (334)
T COG2855 40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFL-G 114 (334)
T ss_pred HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHH----cceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHH-H
Confidence 345678899999433221 11 2236677777764 8999999999999988877666665554443344 4
Q ss_pred HhcCCcHHHHHHHHh---HhhccchhhhHHHH
Q psy3081 76 YFLNLPWIWAFLTGS---IFAAVSPAVVVPCL 104 (327)
Q Consensus 76 ~~~~~~~~~alllg~---~ls~Ts~~v~~~~l 104 (327)
-.+|+|+..++++|+ ++.+.+.+.+-|++
T Consensus 115 ~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 115 KLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 489999999999985 55555554445554
No 68
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=77.00 E-value=27 Score=34.75 Aligned_cols=108 Identities=17% Similarity=0.158 Sum_probs=60.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHH
Q psy3081 202 IFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIV 281 (327)
Q Consensus 202 ~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~ 281 (327)
...++.. +.+..++-++.|+.+|..... + ..+.+. +.+..++.|......|.++|.+.+.. .+.....+.
T Consensus 14 ~~l~~r~--~lP~~v~lil~Gi~lg~~~~~-~----~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~-~~~~i~~la 83 (525)
T TIGR00831 14 AVTVKFI--RLPYPIALILAGLLLGLAGLL-P----EVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRE-NFRPIALIA 83 (525)
T ss_pred HHHhccc--CCCHHHHHHHHHHHHHhcccc-C----CCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHH
Confidence 3445554 445667777778877742110 0 001111 12334678888889999999998833 333333333
Q ss_pred HHHHHH-HHHHHHHHHhCCCCChhhHHHHhhccccchhh
Q psy3081 282 IGGVVT-RILITVLVAVGSSLNLKEKLFVAFSWMAKASV 319 (327)
Q Consensus 282 ~~~~i~-r~~~~~l~~~~~~~~~~e~~~~~~~~~pr~~v 319 (327)
....+. =....+...+..+++|..++.+|....|-..+
T Consensus 84 ~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpv 122 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAV 122 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHH
Confidence 322222 22223333335689999999998877765443
No 69
>KOG3826|consensus
Probab=76.97 E-value=2.2 Score=37.20 Aligned_cols=84 Identities=29% Similarity=0.436 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhhhHHHH
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCL 104 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~~~l 104 (327)
+.+..+..-.+.-..|++.+.+.+++.......+...+..++.-..+...++..+.+|.+++..|.+.....+....|-.
T Consensus 157 s~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 157 SPLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred hhhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccc
Confidence 36677888899999999999999999988888877777777766667778888999999999999999999998776654
Q ss_pred HHhh
Q psy3081 105 FKLR 108 (327)
Q Consensus 105 ~~l~ 108 (327)
...+
T Consensus 237 ~h~~ 240 (252)
T KOG3826|consen 237 QHTQ 240 (252)
T ss_pred hhhc
Confidence 4433
No 70
>PRK03818 putative transporter; Validated
Probab=76.21 E-value=11 Score=37.74 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=57.6
Q ss_pred hhhhhheeccccccc-----cc--cHHHHHHHHHHHHHHHhccCCChHHHHh----hhhhhhhhchhHHHHHHHHHHHHH
Q psy3081 6 FSLFGAFIGGNSEMV-----LD--EFSSYRKMALVVILTRAGLDLDPPALRR----LWSTVLKLGLVPWAVEAISVVIAT 74 (327)
Q Consensus 6 ~ll~GillGp~~~~~-----~~--~~~~l~~~gl~lllF~~Gle~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~ 74 (327)
-+++|+++|-..... .+ ....+.++|+.+++...|++--.+-+.. .+.+...++.....++.......+
T Consensus 406 ~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~ 485 (552)
T PRK03818 406 PLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILA 485 (552)
T ss_pred HHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666544321 11 1348999999999999999887765543 344555555665666655555666
Q ss_pred HHhcCCcHHHHHHHHhH-hhccchhh
Q psy3081 75 HYFLNLPWIWAFLTGSI-FAAVSPAV 99 (327)
Q Consensus 75 ~~~~~~~~~~alllg~~-ls~Ts~~v 99 (327)
++.+++++.. ..|.+ =+-|+|+.
T Consensus 486 ~~~~~~~~~~--~~G~~aG~~t~tp~ 509 (552)
T PRK03818 486 RMLAKMNYLT--LCGMLAGSMTDPPA 509 (552)
T ss_pred HHHHcCCHHH--HHHHHhccCCCcHH
Confidence 7889998763 44543 44455544
No 71
>COG2985 Predicted permease [General function prediction only]
Probab=75.99 E-value=9.2 Score=37.15 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHH--HHHHHHhHhhccchhhhHHH
Q psy3081 29 KMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWI--WAFLTGSIFAAVSPAVVVPC 103 (327)
Q Consensus 29 ~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~alllg~~ls~Ts~~v~~~~ 103 (327)
|+|++++.+..|+|.-+. .+||.+++-..+++.-+ +.....+...+.++++|.. ..++-|+.-+....+.+..+
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alliv-i~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~ 140 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIV-IAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDI 140 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHH
Confidence 899999999999999875 66777777776666643 3334445555667777754 34555554443333333344
Q ss_pred HH
Q psy3081 104 LF 105 (327)
Q Consensus 104 l~ 105 (327)
+.
T Consensus 141 L~ 142 (544)
T COG2985 141 LR 142 (544)
T ss_pred HH
Confidence 43
No 72
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=75.36 E-value=38 Score=35.85 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhh--hhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWS--TVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP 97 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~ 97 (327)
...++.+.++....|+++|++.+..... ....+.+..++.-. +.+.++..++++|+..++.+|..+++-.-
T Consensus 322 ~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~-~g~~l~a~~~g~~~~eal~lG~lm~~kG~ 394 (832)
T PLN03159 322 FVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKI-MGTIIIAFFYTMPFREGITLGFLMNTKGL 394 (832)
T ss_pred HHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHhcccH
Confidence 3356778888889999999988754221 11111222222222 34455566789999999999999998764
No 73
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=75.11 E-value=8.2 Score=32.91 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccc--ccc--hhhHHHHHHHHHHHHHHHHHHH
Q psy3081 217 GVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS--ELD--PQIVSIAAIIVIGGVVTRILIT 292 (327)
Q Consensus 217 a~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~--~l~--~~~~~~~~~~~~~~~i~r~~~~ 292 (327)
++++.|+..|...+.+ + +. .++..+...-+.-..+|+++-.+ .++ .+..+..+.+-+..+++=.++.
T Consensus 3 ~~li~Gi~lG~~~~~~-~-----~~---~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg 73 (191)
T PF03956_consen 3 IALILGILLGYFLRPP-F-----SL---IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGG 73 (191)
T ss_pred eeHHHHHHHHHHhccc-c-----cc---cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567788888765422 1 01 12333322333333456665444 221 2233566667777788999999
Q ss_pred HHHHhCCCCChhhHHHHhhc
Q psy3081 293 VLVAVGSSLNLKEKLFVAFS 312 (327)
Q Consensus 293 ~l~~~~~~~~~~e~~~~~~~ 312 (327)
++.....+.++||++-++.|
T Consensus 74 ~l~~~ll~~~~~~~lav~sG 93 (191)
T PF03956_consen 74 LLASLLLGLSLKESLAVASG 93 (191)
T ss_pred HHHHHHhcCCHHHHHHHHcc
Confidence 99988889999998887654
No 74
>PRK09903 putative transporter YfdV; Provisional
Probab=69.65 E-value=26 Score=32.24 Aligned_cols=79 Identities=14% Similarity=0.004 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchh-HHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhhhH
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLV-PWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVV 101 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~ 101 (327)
..+.+++....+-||..|..++..+++++++ ....... -.+.|... ....+.++.+-.. .-...+.++.-+++..
T Consensus 199 ~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~--~~~~~~~~l~~~~-~~v~vl~aa~P~a~~~ 274 (314)
T PRK09903 199 TFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLAL--LLVGMACHLNSEH-LQMMVLAGALPPAFSG 274 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHH--HHHHHHcCCCcHH-HHHHHHHHcccHHHHH
Confidence 4468889999999999999887766554332 2221121 22234322 2223345665322 2233345555445555
Q ss_pred HHHH
Q psy3081 102 PCLF 105 (327)
Q Consensus 102 ~~l~ 105 (327)
.++.
T Consensus 275 ~i~A 278 (314)
T PRK09903 275 IIIA 278 (314)
T ss_pred HHHH
Confidence 5554
No 75
>KOG2718|consensus
Probab=67.32 E-value=76 Score=30.04 Aligned_cols=107 Identities=19% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHH---HhcCCcHHHHHHHHhHhhccchhhhHHH
Q psy3081 27 YRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATH---YFLNLPWIWAFLTGSIFAAVSPAVVVPC 103 (327)
Q Consensus 27 l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~alllg~~ls~Ts~~v~~~~ 103 (327)
....++...++.-|.+.|.+.+++..++...+.+. ++....+.-...+ ..+.+|...+ ..+...+..+|+-....
T Consensus 114 ~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG-~v~q~~i~pl~~f~~~~~~~lP~~~~-ag~~Lvtc~~p~g~~~~ 191 (371)
T KOG2718|consen 114 CFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG-FVPQYLIMPLLGFLLSKVLLLPAALA-AGLLLVTCVSPGGGGNY 191 (371)
T ss_pred ccccHHHHHHHHHhcCccHHHHhhHhhCCcceeeh-HHHHHHHHHHHHHhhhhHhhCCcccc-ceeEEEEeccCCcchhh
Confidence 33477889999999999999999999998865443 2222222222222 2334554443 34445666666544443
Q ss_pred HHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHH
Q psy3081 104 LFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVH 141 (327)
Q Consensus 104 l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~ 141 (327)
+.....+ .-..+...+...+-+.++++.-...
T Consensus 192 ~~~~~~~------g~v~lsilmT~~stv~avi~~pl~s 223 (371)
T KOG2718|consen 192 LTSKRLP------GDVTLSILMTTISTVLAVILTPLLS 223 (371)
T ss_pred heeecCC------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3221111 2224555566666666665554433
No 76
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=67.10 E-value=8.3 Score=35.30 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=37.2
Q ss_pred CCCChHHHH---HHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081 210 LGGAGPLGV---IASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL 269 (327)
Q Consensus 210 ~~~s~~la~---~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l 269 (327)
++...++++ ++.|+++||. +++.++.+++-...+.|+|-...|..+|++++
T Consensus 166 ip~~~lv~~llP~iiG~iLGNL---------D~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i 219 (314)
T PF03812_consen 166 IPWMSLVAALLPIIIGMILGNL---------DPDFRKFLAPGVPILIPFFGFALGAGINLSNI 219 (314)
T ss_pred CCHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHhcCCCeeeehhhhhhcCCCCHHHH
Confidence 344445444 4577888763 45566666666678999999999999999987
No 77
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=66.40 E-value=42 Score=27.43 Aligned_cols=65 Identities=18% Similarity=-0.025 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhch--hHHHHHHHHHHHHHHHhcCCcHHHHHH
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGL--VPWAVEAISVVIATHYFLNLPWIWAFL 87 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~all 87 (327)
.-+.+.+.+.+++-...|.+++.+.+++..+....... ...+......+...+...++|+.++++
T Consensus 44 ~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 44 LPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 34588899999999999999999988876654432211 111112233444555567889988863
No 78
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=61.68 E-value=1.5e+02 Score=28.19 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy3081 29 KMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLT 88 (327)
Q Consensus 29 ~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alll 88 (327)
++-..-+.--.=+.+|.+.+-|..++.....+.+++.. ...+.+...++|.++..+++.
T Consensus 114 ~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~G~~~~d~~m~ 172 (438)
T COG3493 114 DFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLFGLSFQDTMMY 172 (438)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhCCChHHeeee
Confidence 34444444444468899988888888776666666544 445666677889998887643
No 79
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=59.32 E-value=12 Score=34.26 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081 219 IASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL 269 (327)
Q Consensus 219 ~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l 269 (327)
++.|+++||. +++.++.+++-...+.|+|-...|..+|++++
T Consensus 178 lliG~ilGNL---------D~~~r~fl~~~~~~lIpFf~FaLGaginl~~i 219 (314)
T TIGR00793 178 FLVGFALGNL---------DPELRDFFSKAVQTLIPFFAFALGNTIDLGVI 219 (314)
T ss_pred HHHHHHHhcC---------CHHHHHHhccCCCeeeehhhhhhcCCCCHHHH
Confidence 3567888873 44566666666678999999999999999876
No 80
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=58.13 E-value=31 Score=31.90 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=54.6
Q ss_pred hhhheecccccccccc-HHHHHHHHHHHHHHHhccCC--ChHHHHhhhhhhhhhchhHHHHHHH--HHHHHHHHhcCCcH
Q psy3081 8 LFGAFIGGNSEMVLDE-FSSYRKMALVVILTRAGLDL--DPPALRRLWSTVLKLGLVPWAVEAI--SVVIATHYFLNLPW 82 (327)
Q Consensus 8 l~GillGp~~~~~~~~-~~~l~~~gl~lllF~~Gle~--~~~~l~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (327)
+.|.+-||.+....+. ...+-+-.++++|.+-|++- +++++||........ +.++|.+ ..+....++.|++.
T Consensus 188 iIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~F---gi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 188 IIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAF---GILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHhheeCccchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455555655442322 24555667888888888854 445666666655544 4444432 23444456789998
Q ss_pred HHHHHHHhHhhccchhhhHHHHHH
Q psy3081 83 IWAFLTGSIFAAVSPAVVVPCLFK 106 (327)
Q Consensus 83 ~~alllg~~ls~Ts~~v~~~~l~~ 106 (327)
..+.+++...++.| =+.+|.-.+
T Consensus 265 Gg~~llavLaASAS-YIAvPAAmR 287 (327)
T PF05982_consen 265 GGAVLLAVLAASAS-YIAVPAAMR 287 (327)
T ss_pred ccHHHHHHHHhhHh-hhhhhHHHH
Confidence 88888876555443 344554433
No 81
>COG2985 Predicted permease [General function prediction only]
Probab=57.39 E-value=44 Score=32.67 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhccCCChH---HHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHh-Hhhccchhh
Q psy3081 25 SSYRKMALVVILTRAGLDLDPP---ALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGS-IFAAVSPAV 99 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~-~ls~Ts~~v 99 (327)
..++|+|+.++|=..|++---+ .+-..+-.....+..-.++|...+.+++++.++++|.. +.|+ +=+-|||+.
T Consensus 427 ~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~kmn~~~--l~G~laGs~T~ppa 503 (544)
T COG2985 427 LALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLKMNWLL--LCGALAGSMTDPPA 503 (544)
T ss_pred HHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHhccHHH--HhhHHhcCCCChHH
Confidence 4889999998887777755432 23344445555566666677777888899999998865 4444 445677764
No 82
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=55.98 E-value=20 Score=32.78 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=40.1
Q ss_pred hhhhhhheeccccccccccHHHHH---HHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHH
Q psy3081 5 LFSLFGAFIGGNSEMVLDEFSSYR---KMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAI 68 (327)
Q Consensus 5 ~~ll~GillGp~~~~~~~~~~~l~---~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~ 68 (327)
+.++.|+++|..-.+ ..++++ ..-..+.-|..|-.+|++++.+.+-+=..+++...+++..
T Consensus 176 lPlliG~ilGNLD~~---~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~ 239 (314)
T TIGR00793 176 LPFLVGFALGNLDPE---LRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGI 239 (314)
T ss_pred HHHHHHHHHhcCCHH---HHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH
Confidence 456777777743221 122333 3556788899999999999988877766676666665543
No 83
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=52.34 E-value=1.2e+02 Score=28.84 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH-hcCCcH-------HHHHHHHhHhhccchhh
Q psy3081 28 RKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY-FLNLPW-------IWAFLTGSIFAAVSPAV 99 (327)
Q Consensus 28 ~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-------~~alllg~~ls~Ts~~v 99 (327)
+-+|+..++-..-.+.+.+.+.+..+-....- ....+-.+.......+ .-+.++ ..+++. +++..|+..
T Consensus 184 ~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~-~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~--Af~T~SS~a 260 (390)
T PF00375_consen 184 APIGVFGLIANSIATQGLSILGALGKFVLTVY-VALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLT--AFSTSSSAA 260 (390)
T ss_dssp HHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHH-HHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHH--HHHHT-TTT
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHH--HhhccCCCC
Confidence 34666677777777788888887765444332 2222221222222222 334332 234443 456666777
Q ss_pred hHHHHHHhhhcCCCCCCChhHHH
Q psy3081 100 VVPCLFKLRSKGYGVAKGIPTLV 122 (327)
Q Consensus 100 ~~~~l~~l~~~~~~~~~~~~~~l 122 (327)
+.|...|..+++++.++++.+..
T Consensus 261 tlP~~~~~~~~~~gv~~~i~~fv 283 (390)
T PF00375_consen 261 TLPVTIECLEENLGVSRSIASFV 283 (390)
T ss_dssp SHHHHHHHHHT-TT--HHHHHHH
T ss_pred CchhHHHHHHHhcCCCcccceee
Confidence 88988887677677887777665
No 84
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=52.09 E-value=28 Score=29.93 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHH
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAF 86 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~al 86 (327)
.++|++++ .-.+|.|.++.||.+..-..--+.+.++++.. +....+.||+.-..++
T Consensus 83 MlRDfAIv----aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~-Ga~vA~afGY~DavS~ 138 (254)
T TIGR00808 83 MLRDLAIV----ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVI-GAMVAWAFGYRDAVSM 138 (254)
T ss_pred HHHHHHHH----HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHH-HHHHHHHHcCCCchhh
Confidence 55555544 45679999999998876655556677788654 4455567888655444
No 85
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=51.87 E-value=1.5e+02 Score=25.88 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=46.0
Q ss_pred hhhhheeccccccc---cccHHHHHHHHHHHHHHHhccCCChHHHHhhhhhh----hhhchhHHHHHHHHHHHHH---HH
Q psy3081 7 SLFGAFIGGNSEMV---LDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTV----LKLGLVPWAVEAISVVIAT---HY 76 (327)
Q Consensus 7 ll~GillGp~~~~~---~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~----~~l~~~~~~~~~~~~~~~~---~~ 76 (327)
.+.+.+.+++..+. ...+.......+.+.+...|...-.+. |++.+.. ...-..|+..+.....+.. .-
T Consensus 46 ~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W-~~~~~~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~ 124 (224)
T PF09930_consen 46 LLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKW-KKSGKDSSRRTFLALSLPCPVCLTAIFFSIMLLAP 124 (224)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-cccCCCCcccchhhhhcCchHHHHHHHHHHHHHHH
Confidence 34455555542221 123345667778888999998776443 2332332 2222233333322222222 22
Q ss_pred hcCCc-HHHHHHHHhHhhccc
Q psy3081 77 FLNLP-WIWAFLTGSIFAAVS 96 (327)
Q Consensus 77 ~~~~~-~~~alllg~~ls~Ts 96 (327)
.++.+ |..+...|.++..+.
T Consensus 125 ~~~~s~~~ig~~~g~if~i~i 145 (224)
T PF09930_consen 125 SIGLSGWEIGLVLGLIFFILI 145 (224)
T ss_pred hcCchHHHHHHHHHHHHHHHH
Confidence 34554 778888888887776
No 86
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=50.75 E-value=68 Score=30.83 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhccC-CChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHhHhhcc
Q psy3081 25 SSYRKMALVVILTRAGLD-LDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNL-PWIWAFLTGSIFAAV 95 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~alllg~~ls~T 95 (327)
+++..--...+|+-.|.. +|++++.+.......+-....++.....+.+...++|+ |.+.|..-|.|.+.-
T Consensus 303 ~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~ 375 (414)
T PF03390_consen 303 KFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANM 375 (414)
T ss_pred HHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCC
Confidence 366677778999999999 99999999887776665555666666666666778886 555566655465543
No 87
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=50.68 E-value=94 Score=29.49 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhccC-CChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHhHhhc
Q psy3081 25 SSYRKMALVVILTRAGLD-LDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNL-PWIWAFLTGSIFAA 94 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~alllg~~ls~ 94 (327)
++++.=-.-.+|+-.|.. .|++++-+.....-.+....+++.....+.+..+++|+ |.+.|..-|.|.+.
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~ 393 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMAN 393 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcC
Confidence 366666677899999997 99999998777766666667777777777777778885 56666666677764
No 88
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=50.54 E-value=1.9e+02 Score=27.74 Aligned_cols=114 Identities=15% Similarity=0.100 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHH----HHHhHhhccchh
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAF----LTGSIFAAVSPA 98 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~al----llg~~ls~Ts~~ 98 (327)
..+.++++.+-+++-.+=..+|+.++.+.+.+...+...+++.......++....+|-+.+.|. .+|..+.+|..+
T Consensus 274 ~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatpta 353 (398)
T TIGR00210 274 AVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTA 353 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHH
Confidence 3458889999999999999999999999999999999999888876666676777776644433 566777777655
Q ss_pred hhHHHHHHhhhcCCCCCCChhH--HHHHHhhhhhHHHHHHHHHH
Q psy3081 99 VVVPCLFKLRSKGYGVAKGIPT--LVIAVSGMGDATSVAIFGIV 140 (327)
Q Consensus 99 v~~~~l~~l~~~~~~~~~~~~~--~l~~~a~l~D~~~v~l~~~~ 140 (327)
+ ..++... ++||- ++..- .=+..+.+-|.........+
T Consensus 354 i--anm~av~-~~yg~-s~~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 354 I--ANMQAVT-ERFGP-SHQAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred H--HHHHHHH-hccCC-CCcceehhhhHHHHHHHHhhHHHHHHH
Confidence 3 3444444 33553 23222 22445667777665554433
No 89
>COG0679 Predicted permeases [General function prediction only]
Probab=50.30 E-value=1.8e+02 Score=26.61 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhhhheeccccccccccHH----HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcH
Q psy3081 7 SLFGAFIGGNSEMVLDEFS----SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPW 82 (327)
Q Consensus 7 ll~GillGp~~~~~~~~~~----~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (327)
.+.|+++-..+....+..+ .+++....+.|+..|..++.+..++...+........=.+-.-+........+|++-
T Consensus 174 ~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~ 253 (311)
T COG0679 174 LILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSG 253 (311)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q ss_pred HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHH
Q psy3081 83 IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVH 141 (327)
Q Consensus 83 ~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~ 141 (327)
.+. -.....++.-+++..-++ .++++.+++........+.+--...+......+
T Consensus 254 ~~~-~v~vl~~a~P~A~~~~v~----a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 254 LAL-QVLVLLSAMPTAVNAYVL----ARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHH-HHHHHHhhCcHHhHHHHH----HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
No 90
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=46.10 E-value=1.1e+02 Score=28.58 Aligned_cols=69 Identities=14% Similarity=0.014 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhccC-CChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHhHhhc
Q psy3081 26 SYRKMALVVILTRAGLD-LDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNL-PWIWAFLTGSIFAA 94 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~alllg~~ls~ 94 (327)
++..-....++.-.|+. .|++++-+.............++...+.+.+...++|+ |.+.|..-|.|.+.
T Consensus 237 F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~ 307 (347)
T TIGR00783 237 FISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSG 307 (347)
T ss_pred HHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccC
Confidence 44455556777778987 89999999884444444444445555556566677875 56666666655553
No 91
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=42.89 E-value=1.1e+02 Score=28.84 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHH----HHHhHhhccchh
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAF----LTGSIFAAVSPA 98 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~al----llg~~ls~Ts~~ 98 (327)
..+.++++.+-+++..+=..+|+..+.+...+...+...+.++......+.....+|-++..+. .+|..+.+|..+
T Consensus 276 ~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a 355 (368)
T PF03616_consen 276 TIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNA 355 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHH
Confidence 3458899999999999999999999999999988777777776655555555667777776544 344556666544
Q ss_pred hhHHHHHHhh
Q psy3081 99 VVVPCLFKLR 108 (327)
Q Consensus 99 v~~~~l~~l~ 108 (327)
++.++...
T Consensus 356 --~anm~~v~ 363 (368)
T PF03616_consen 356 --MANMQAVT 363 (368)
T ss_pred --HHHHHHHH
Confidence 44444443
No 92
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=41.72 E-value=4.7 Score=37.97 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHH
Q psy3081 205 SEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGG 284 (327)
Q Consensus 205 ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~ 284 (327)
.+.+ +.+..++-++.|++.|...-.- .+++ .+..+.+.++..++.....|.++|.+.+.. .+..........
T Consensus 15 ~~r~--~iP~~i~~i~~Gi~lg~~~~~~----~~~~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~~-~~~~~~~~~~~~ 86 (380)
T PF00999_consen 15 FRRL--GIPSIIGYILVGIVLGPSGLGL----LEPD-NPSFELLAEIGLAFLLFEAGLELDIKELRR-NWRRALALGLVG 86 (380)
T ss_dssp ----------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------
T ss_pred HHHh--CCCHHHHHHHheeehhhhhhhh----ccch-hhHHHHHHHHHHHHHHHHHHHhhccccccc-ccccccccccce
Confidence 4444 3445666667777777543210 0111 233455667777777788999999998843 233333333333
Q ss_pred HHHHHHH-HHHHHh---CCCCChhhHHHHhhcccc
Q psy3081 285 VVTRILI-TVLVAV---GSSLNLKEKLFVAFSWMA 315 (327)
Q Consensus 285 ~i~r~~~-~~l~~~---~~~~~~~e~~~~~~~~~p 315 (327)
...-... .+.... ..++++.+++.+|..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ 121 (380)
T PF00999_consen 87 FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSA 121 (380)
T ss_dssp ---------------------------TTHHHHTT
T ss_pred eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhc
Confidence 3333333 333332 468899999999876654
No 93
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=41.60 E-value=1.1e+02 Score=28.17 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhccCCChHHHHhhhhhhhhh--chhHHHHHHHHHHHHHHHhcCCcHHHHHH
Q psy3081 25 SSYRKMALVVILTRAGLDLDPPALRRLWSTVLKL--GLVPWAVEAISVVIATHYFLNLPWIWAFL 87 (327)
Q Consensus 25 ~~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~all 87 (327)
+.+...+-+++=...|.++|.+.+|+..|..... .....+......+...+.+.++|+.++++
T Consensus 203 ~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L 267 (318)
T PF05145_consen 203 PWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678888888889999999999988776554332 12222222334455556667888888763
No 94
>KOG1650|consensus
Probab=40.16 E-value=3.9e+02 Score=28.12 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccch
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP 97 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~ 97 (327)
...++.+.+.....|++.|...+.+ +.............. ++.+....++.++|+..++.+|.+++.-..
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K-~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl 379 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVK-LLSTLGTSLYCKLPLRDSLALGLLMSTKGL 379 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHhcCchhHHHHHHHHHHhhhH
Confidence 3446788889999999999999998 433333333333333 344444455789999999999999987764
No 95
>KOG3826|consensus
Probab=34.97 E-value=33 Score=30.09 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=70.3
Q ss_pred HHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccchhhhHHHHHHhhhcC
Q psy3081 32 LVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKG 111 (327)
Q Consensus 32 l~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~ 111 (327)
++.+.-..|+..|.+.+-+..+...........-. .. ..+...+.++....+...+ -+++..+++..-..++++
T Consensus 99 l~~~iV~~~lA~~g~~lle~A~~P~~i~l~~aige-l~---a~fLiiNI~~~~~~~~~~i--v~s~l~t~a~~I~~ik~g 172 (252)
T KOG3826|consen 99 LFGLIVIWGLATDGGFLLELARVPVTIGLPTAIGE-LL---AGFLIINISFVNGAVCAPI--VVSPLRTVALTIIKIKAG 172 (252)
T ss_pred eEeeehhhhHhhchHhhHhhccccccccccchHHH-HH---HHHHheecchhhhceeeee--eehhhhhccchHHHHHhh
Confidence 34455556677777777777776665544433322 11 2244557777665554442 234444444333445667
Q ss_pred CCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3081 112 YGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGD 183 (327)
Q Consensus 112 ~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~~~~~~~~ 183 (327)
.+..+|..+-+...... +.+......+......+....-..+.-+...|.+.+++.+++.|...
T Consensus 173 Lgt~~r~~~nv~~vc~~--------~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 173 LGTLPRAPENVLAVCCV--------LMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred hcccccchhhhhHHHhh--------hhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccc
Confidence 77666655544333222 44444444443332222222122334455666677777777766544
No 96
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=34.20 E-value=2.9e+02 Score=23.41 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=21.0
Q ss_pred ChhHHHHHHhhhhhHHHHHHH-HHHHHHHcC
Q psy3081 117 GIPTLVIAVSGMGDATSVAIF-GIVHSFMFS 146 (327)
Q Consensus 117 ~~~~~l~~~a~l~D~~~v~l~-~~~~~~~~~ 146 (327)
++.-.+...+.+-|..+.... .+..+...+
T Consensus 2 ~l~~lLtf~aG~iDa~~fl~~~~~F~s~~TG 32 (209)
T PF06912_consen 2 RLALLLTFIAGFIDAYSFLALGGVFVSFMTG 32 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHhHH
Confidence 344566777889999998887 566665444
No 97
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=33.89 E-value=3.9e+02 Score=24.83 Aligned_cols=128 Identities=19% Similarity=0.144 Sum_probs=61.3
Q ss_pred hhhhhhhheeccccccccccHHHHHHHHHHHHHHHhcc----CCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcC
Q psy3081 4 HLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGL----DLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLN 79 (327)
Q Consensus 4 ~~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gl----e~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (327)
.+|.+.|++.+-..-+ ++.-+.+.+.--+++|+.+|+ |+.-..+.....+...--..+.++|... ......+.+
T Consensus 3 vLFF~LG~~A~~~kSd-L~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~-~~iLr~~~~ 80 (327)
T PF05982_consen 3 VLFFILGIIAALLKSD-LEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIA-FPILRRLGK 80 (327)
T ss_pred hHHHHHHHHHHHHcCC-CcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHccC
Confidence 3566667766643332 333335555556666666665 4443333333333222223344444322 122233456
Q ss_pred CcHHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHH
Q psy3081 80 LPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAI 136 (327)
Q Consensus 80 ~~~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l 136 (327)
++...+.-+++--.+.|.++-.....-++.++.. --+.+....+..+-...++.
T Consensus 81 l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~---yeg~m~a~~alME~PAIiva 134 (327)
T PF05982_consen 81 LDRADAAAIAAHYGSVSAVTFAAALAFLESQGIS---YEGYMVALLALMESPAIIVA 134 (327)
T ss_pred CChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCC---ccccHHHHHHHHhhhHHHHH
Confidence 8888888888777666654333333334444321 22344444444544444433
No 98
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.44 E-value=4.3e+02 Score=24.17 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHH
Q psy3081 251 IFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTR 288 (327)
Q Consensus 251 ~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r 288 (327)
+-.|+.|.++.-+-+...-+...|....++.+.....|
T Consensus 231 lTlPvLf~MiSnHyp~~y~~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 231 LTLPVLFLMISNHYPMTYGHPYNWLILALIMLAGALIR 268 (300)
T ss_pred eHHHHHHHHHhccCccccccchhHHHHHHHHHHHHHHH
Confidence 56899999987777766655555544444444445555
No 99
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=30.34 E-value=3.8e+02 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=12.7
Q ss_pred CCChHHHHhhhhhhhhhchhHHHHH
Q psy3081 42 DLDPPALRRLWSTVLKLGLVPWAVE 66 (327)
Q Consensus 42 e~~~~~l~~~~~~~~~l~~~~~~~~ 66 (327)
-=+++.+||+|+++..-...+..+.
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~a 104 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVA 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666665554444444444
No 100
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=26.90 E-value=3.5e+02 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.9
Q ss_pred hHHHHhhccccchhhhhhccCC
Q psy3081 305 EKLFVAFSWMAKASVQLFLYLG 326 (327)
Q Consensus 305 e~~~~~~~~~pr~~v~~al~~~ 326 (327)
|...-|+--.|||..+||.|.|
T Consensus 109 Ei~R~GI~aVpkGQ~EAA~aLG 130 (222)
T COG0765 109 EIVRAGIQSVPKGQWEAARALG 130 (222)
T ss_pred HHHHHHHhcCCHhHHHHHHHcC
Confidence 8889999999999999998876
No 101
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.59 E-value=64 Score=25.47 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q psy3081 162 IIGLAFGIIWGSLAKVVPEK 181 (327)
Q Consensus 162 ~~g~~~g~~~g~l~~~~~~~ 181 (327)
++++++|+++|+++.|+.++
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45666777777766665543
No 102
>PRK10457 hypothetical protein; Provisional
Probab=26.46 E-value=2.5e+02 Score=20.28 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q psy3081 164 GLAFGIIWGSLAKVVPEKG 182 (327)
Q Consensus 164 g~~~g~~~g~l~~~~~~~~ 182 (327)
-+++|.+.||+.+++++..
T Consensus 6 ~iiiG~iaG~lA~~i~pg~ 24 (82)
T PRK10457 6 WIIFGLIAGILAKWIMPGK 24 (82)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4556777788888776643
No 103
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=25.88 E-value=6.1e+02 Score=24.49 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCCChhhHHHHhhccccchh
Q psy3081 250 MIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVG--SSLNLKEKLFVAFSWMAKAS 318 (327)
Q Consensus 250 ~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~--~~~~~~e~~~~~~~~~pr~~ 318 (327)
.++.|..-.--|.++|.+++.. .+.....+.....+.-..+.....+. .+.++.+++..|-...|-..
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~-~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDP 133 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR-VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDP 133 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCc
Confidence 6666666667899999988833 33333333333344444444443332 38888888888776666433
No 104
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=25.26 E-value=4.9e+02 Score=23.71 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy3081 214 GPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITV 293 (327)
Q Consensus 214 ~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~ 293 (327)
+.+-+.+.|+.+...-- + ..+.+++.++.+.+...|+--+.+|++++......+ +..........++.-+..++
T Consensus 183 P~iia~i~Gl~~~~~~i--~---lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~-~~~~~~~~~~klil~P~i~~ 256 (321)
T TIGR00946 183 PPLWAPLLSVILSLVGF--K---MPGLILKSISILSGATTPMALFSLGLALSPRKIKLG-VRDAILALIVRFLVQPAVMA 256 (321)
T ss_pred CChHHHHHHHHHHHHhh--c---CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccC-hHHHHHHHHHHHHHHHHHHH
Confidence 44445566665543211 1 234566677888888999999999999887766332 23444445555666666666
Q ss_pred HHHhCCCCCh--hhHHHHhhccccchhhhh
Q psy3081 294 LVAVGSSLNL--KEKLFVAFSWMAKASVQL 321 (327)
Q Consensus 294 l~~~~~~~~~--~e~~~~~~~~~pr~~v~~ 321 (327)
......+.+. ++...+- +-+|-+....
T Consensus 257 ~~~~~~~l~~~~~~~~vl~-aa~P~a~~~~ 285 (321)
T TIGR00946 257 GISKLIGLRGLELSVAILQ-AALPGGAVAA 285 (321)
T ss_pred HHHHHhCCChHHHHHHHHH-HcCChhhHHH
Confidence 6554444443 2222221 3456555443
No 105
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=24.41 E-value=3.3e+02 Score=25.08 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHHHHHHHHHHHhccccccccc
Q psy3081 216 LGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSEL 269 (327)
Q Consensus 216 la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~plfF~~~G~~i~~~~l 269 (327)
+-+++.+..++..+|..+. ....++ .|...+....+.|...|++++.+++
T Consensus 4 l~~l~~ai~la~~~P~~g~--~~~~~~--~~~~~~~~v~~iFf~~Gl~L~~~~l 53 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGA--AGGVIK--PEYVIKYGVALIFFISGLSLPTEEL 53 (313)
T ss_pred HHHHHHHHHHHHHcCcccc--cCCccc--hhhhHHHHHHHHHHHHcCCCCHHHH
Confidence 4445666667776664321 111121 1344455688888889999999987
No 106
>KOG3787|consensus
Probab=22.96 E-value=97 Score=30.06 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=24.2
Q ss_pred HHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHHH
Q psy3081 84 WAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVI 123 (327)
Q Consensus 84 ~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l~ 123 (327)
+++..+ ++..|.+.+.|+-.+.-+++.|+++|+++.++
T Consensus 304 Qal~TA--~gTsSSsATLPitfkCleEn~gVD~RiTRFVL 341 (507)
T KOG3787|consen 304 QALATA--FGTASSSATLPITFKCLEENLGVDKRVTRFVL 341 (507)
T ss_pred HHHHHH--HhcccccccchHHHHHHHHhCCCCcceeeeec
Confidence 444443 33344445677766666777899999888654
No 107
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=22.48 E-value=6.9e+02 Score=23.92 Aligned_cols=107 Identities=10% Similarity=0.056 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHH-HHHHHHHhcCCc-HHH-----HHHHHhHhhccchh
Q psy3081 26 SYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAIS-VVIATHYFLNLP-WIW-----AFLTGSIFAAVSPA 98 (327)
Q Consensus 26 ~l~~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~-----alllg~~ls~Ts~~ 98 (327)
.++-+|+.-++-..--+.+.+.+....+-.... ..+.++-.+. .....+...+.+ +.. .=..-.+++..|.+
T Consensus 188 ~laPiGVfaliA~~v~~~g~~~l~~l~~~v~~~-~~~~~i~~~vv~~~i~~~~~~~~p~~~~~k~~~~~~~~AfsT~SS~ 266 (402)
T PRK13628 188 RFAPIGIFGLVASTLAETGFSALAGYAQLLAVL-VGCMLFVALVVNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSSA 266 (402)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHheehhHH
Confidence 344566766666666667888888766544322 2222221111 122222223443 221 11233467777888
Q ss_pred hhHHHHHHhhhcCCCCCCChhHHHH--HHhhhhhHHHH
Q psy3081 99 VVVPCLFKLRSKGYGVAKGIPTLVI--AVSGMGDATSV 134 (327)
Q Consensus 99 v~~~~l~~l~~~~~~~~~~~~~~l~--~~a~l~D~~~v 134 (327)
.+.|+..|..+ +.|.++++.+..+ +.+.=.|..++
T Consensus 267 AtLPv~m~~~~-~lGv~~~i~~fvlPLGat~nmdG~al 303 (402)
T PRK13628 267 ANIPVNMALCE-KLGLDEDTYSVSIPLGATINMAGAAI 303 (402)
T ss_pred hHHHHHHHHHH-HcCcCccceeEEeecccccCCCccHH
Confidence 88998766433 5788888887655 44444565553
No 108
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=3.8e+02 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3081 156 LGPSSLIIGLAFGIIWGSLAKVVPE 180 (327)
Q Consensus 156 ~~~~~i~~g~~~g~~~g~l~~~~~~ 180 (327)
.+...++.|+++|..+||++-++..
T Consensus 47 klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 47 KLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455678889999999988766544
No 109
>PRK11677 hypothetical protein; Provisional
Probab=21.19 E-value=1.1e+02 Score=24.38 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q psy3081 161 LIIGLAFGIIWGSLAKVVPE 180 (327)
Q Consensus 161 i~~g~~~g~~~g~l~~~~~~ 180 (327)
.+.++++|+++|+++.|+..
T Consensus 6 a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34567777778877666544
No 110
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=20.91 E-value=6.7e+02 Score=24.21 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCChHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcH-------HHHHHHHhHhhccchhhhH
Q psy3081 29 KMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPW-------IWAFLTGSIFAAVSPAVVV 101 (327)
Q Consensus 29 ~~gl~lllF~~Gle~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~alllg~~ls~Ts~~v~~ 101 (327)
-+|..-++...--+..++.+..-.+-...+-....+.-+.....+.++..|.+. ..++++ +++..|...+.
T Consensus 192 Pigvf~~~a~~v~~~G~~~L~~l~~~v~~~~~~~~l~~~vvl~~~~~~~~g~s~~~~~r~~~~~~~~--Af~T~SS~atL 269 (415)
T COG1301 192 PIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLGLLLKLLSGFSPFKFLRYISEALLL--AFSTSSSEATL 269 (415)
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHhcchhhhhh
Confidence 344444444443444556666655554433222222222222333333446542 234444 56666777789
Q ss_pred HHHHHhhhcCCCCCCChhHH
Q psy3081 102 PCLFKLRSKGYGVAKGIPTL 121 (327)
Q Consensus 102 ~~l~~l~~~~~~~~~~~~~~ 121 (327)
|...|..+++.|.+|++.+.
T Consensus 270 Pv~m~~~e~~~Gv~~~i~~f 289 (415)
T COG1301 270 PVTMEKAEKSLGVPKSIVSF 289 (415)
T ss_pred HHHHHHHHHhcCCCcceeEE
Confidence 99888777778888887653
No 111
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.83 E-value=6.7e+02 Score=23.27 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCchHHhHHHHHH-HHHHH-HHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy3081 237 EDNPVATAFEIFW-MIFEP-ILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKL 307 (327)
Q Consensus 237 ~~~~l~~~~~~~~-~~~~p-lfF~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~~~l~~~~~~~~~~e~~ 307 (327)
.+++-.+.++.+. +++.| +.|..+.-..+.+.+ .+ ++...+...+..+.=....++..+..+.+.+++.
T Consensus 25 l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (385)
T PF03547_consen 25 LDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDL-LS-LWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRG 95 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh-hh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce
Confidence 3444556676665 57777 456666655555544 22 2233222222222223334444454455554443
Done!