Query psy3081
Match_columns 327
No_of_seqs 151 out of 1160
Neff 8.7
Searched_HMMs 29240
Date Sat Aug 17 01:12:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.8 3.4E-19 1.2E-23 165.2 9.9 269 23-323 59-345 (388)
2 3zux_A Transporter, ASBTNM; tr 97.1 0.0073 2.5E-07 54.9 13.4 165 3-179 20-189 (332)
3 2l0e_A Sodium/hydrogen exchang 96.4 0.00029 1E-08 40.9 -1.0 29 81-109 2-30 (33)
4 2htg_A NHE-1, NHE1 isoform of 95.0 0.0016 5.4E-08 36.1 -1.7 25 114-138 2-26 (28)
5 2k3c_A TMIX peptide; membrane 49.8 0.063 2.2E-06 31.0 -7.5 26 199-226 4-29 (33)
6 2zy9_A Mg2+ transporter MGTE; 24.3 1.9E+02 0.0064 26.9 7.5 91 42-139 369-464 (473)
7 3zux_A Transporter, ASBTNM; tr 23.5 2.1E+02 0.0072 25.2 7.3 40 285-324 238-278 (332)
8 2nwl_A GLTPH, glutamate sympor 16.5 3E+02 0.01 25.2 6.8 31 91-122 272-302 (422)
9 4dx5_A Acriflavine resistance 7.8 1.6E+03 0.055 22.8 10.5 33 49-83 359-391 (1057)
10 1xl4_A Inward rectifier potass 3.8 1.8E+03 0.061 18.7 10.8 10 48-57 42-51 (301)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.78 E-value=3.4e-19 Score=165.24 Aligned_cols=269 Identities=14% Similarity=0.149 Sum_probs=174.6
Q ss_pred cHHHHHHHHHHHHHHHhccCCChHHH----Hhhhh--hhhhhchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHhhccc
Q psy3081 23 EFSSYRKMALVVILTRAGLDLDPPAL----RRLWS--TVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVS 96 (327)
Q Consensus 23 ~~~~l~~~gl~lllF~~Gle~~~~~l----~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~alllg~~ls~Ts 96 (327)
..+.+.|-.+.+++|.+|+|+|.+.+ |+.+| .+...+..++++|+.+ +..++.+...+..-+.+.++||
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~~~~~~~~~~gw~ip~ATd 133 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAFNYADPITREGWAIPAATD 133 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGGCCSSTTHHHHTSSSSCCC
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHhcCChhhhhhhHHHHHHH
Confidence 34578899999999999999999977 55544 3566677788888543 4567776666778889999999
Q ss_pred hhhhHHHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3081 97 PAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAK 176 (327)
Q Consensus 97 ~~v~~~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~g~~~g~l~~ 176 (327)
.+.++.++..+.++ .|++.++.+++.+.+||+.+|++++++.+ ++.+ ..... .. +.....-+..+
T Consensus 134 IAfal~vL~~lg~~---~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~-~~~l~-------~~-~~~~~~~~~l~ 198 (388)
T 1zcd_A 134 IAFALGVLALLGSR---VPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS-MASLG-------VA-AVAIAVLAVLN 198 (388)
T ss_dssp HHHHHHHHHSSCSS---SCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC-HHHHH-------HH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc-HHHHH-------HH-HHHHHHHHHHH
Confidence 99998888776533 57788899999999999999999988753 2221 11111 00 11111112222
Q ss_pred hhcCCCCCCccchhHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHhhhhcccCCCCCCchHHhHHHHHHH-HHHHH
Q psy3081 177 VVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWM-IFEPI 255 (327)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ae~~g~~~s~~la~~i~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~pl 255 (327)
|. +.+ + ......+ ++.++..+|..|+| +.+|++++|+++....+ ++ +...+++++++++... ++.|+
T Consensus 199 r~--~v~---~-~~~y~~l--gl~~w~~~~~sGvH--atigg~l~Gl~ip~~~~-~~-~~~~~~le~~l~p~v~~~ilPl 266 (388)
T 1zcd_A 199 LC--GAR---R-TGVYILV--GVVLWTAVLKSGVH--ATLAGVIVGFFIPLKEK-HG-RSPAKRLEHVLHPWVAYLILPL 266 (388)
T ss_dssp HT--TCC---C-THHHHHH--HHHHHHHTTTSHHH--HHHHHHHHHHHSCCCGG-GS-SCHHHHHHHHHHHHHHHTHHHH
T ss_pred Hh--cch---h-HHHHHHH--HHHHHHHHHHhCcc--HHHHHHHHHHhccCCCc-cC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 1 1111222 33445556777666 67776666666543111 11 1124567778888774 78999
Q ss_pred H-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHH----HHHHHhCC------CCChhhHHHHhhccccchhhhhhc
Q psy3081 256 L-FGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILI----TVLVAVGS------SLNLKEKLFVAFSWMAKASVQLFL 323 (327)
Q Consensus 256 f-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~i~r~~~----~~l~~~~~------~~~~~e~~~~~~~~~pr~~v~~al 323 (327)
| |...|.++|....+...-.....+.+..+++|+++ +++..+.. |++|||..-+|+.+.-+++++.-+
T Consensus 267 FaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~I 345 (388)
T 1zcd_A 267 FAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFI 345 (388)
T ss_dssp HHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHH
T ss_pred HHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHH
Confidence 9 99999999985432110111123444558999999 55554544 899999988877666678887654
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.11 E-value=0.0073 Score=54.94 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=90.4
Q ss_pred chhhhhhhheeccccccccccHHHHHHHHHHHHHHHhccCCChHHHHhhhhh---hhhhchhHH-HHHHHHHHHHHHHhc
Q psy3081 3 KHLFSLFGAFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWST---VLKLGLVPW-AVEAISVVIATHYFL 78 (327)
Q Consensus 3 ~~~~ll~GillGp~~~~~~~~~~~l~~~gl~lllF~~Gle~~~~~l~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~~~ 78 (327)
.++.++.++++|-..++..+..+......+.+.||..|+++|.+++++..++ ......... +.|.. ++.....+
T Consensus 20 ~~l~i~~~~~lg~~~P~~~~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll--~~~l~~~~ 97 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPAT--AWCLSKLL 97 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 4566777888886555534444455567899999999999999999954443 322222222 23322 22333355
Q ss_pred CCcHHHHHHHHhHhhccchhhhH-HHHHHhhhcCCCCCCChhHHHHHHhhhhhHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy3081 79 NLPWIWAFLTGSIFAAVSPAVVV-PCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLG 157 (327)
Q Consensus 79 ~~~~~~alllg~~ls~Ts~~v~~-~~l~~l~~~~~~~~~~~~~~l~~~a~l~D~~~v~l~~~~~~~~~~~~~~~~~~~~~ 157 (327)
+.+. .+..|.++.+..|..+. .++.++ .++ +. ........+++..+++...+...+..++... .+....
T Consensus 98 ~l~~--~~~~Glil~~~~P~~~~s~v~t~~-a~G-----d~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~-v~~~~~ 167 (332)
T 3zux_A 98 NLPA--EIAVGVILVGCCPGGTASNVMTYL-ARG-----NV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE-IQAAGM 167 (332)
T ss_dssp TCCH--HHHHHHHHHHHSCCCTHHHHHHHH-TTC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred CCCh--HHHHHHHHHhcCCchhHHHHHHHH-hCC-----CH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CCHHHH
Confidence 6554 34445554444443333 333332 233 32 5667778899999988888777665543321 112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q psy3081 158 PSSLIIGLAFGIIWGSLAKVVP 179 (327)
Q Consensus 158 ~~~i~~g~~~g~~~g~l~~~~~ 179 (327)
..++..-+++-.+.|.+.|+..
T Consensus 168 ~~~l~~~vllP~~lG~l~r~~~ 189 (332)
T 3zux_A 168 LMSIVKMVLLPIVLGLIVHKVL 189 (332)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333334444555555443
No 3
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=96.43 E-value=0.00029 Score=40.92 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.4
Q ss_pred cHHHHHHHHhHhhccchhhhHHHHHHhhh
Q psy3081 81 PWIWAFLTGSIFAAVSPAVVVPCLFKLRS 109 (327)
Q Consensus 81 ~~~~alllg~~ls~Ts~~v~~~~l~~l~~ 109 (327)
+|..++++|+++++|||+.+.+++++++.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45568899999999999999999887653
No 4
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=94.98 E-value=0.0016 Score=36.06 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCChhHHHHHHhhhhhHHHHHHHH
Q psy3081 114 VAKGIPTLVIAVSGMGDATSVAIFG 138 (327)
Q Consensus 114 ~~~~~~~~l~~~a~l~D~~~v~l~~ 138 (327)
.++++..++.+||.+||.++++++.
T Consensus 2 V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 2 INELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCceEEEEEEeeeeecccEEEEEEe
Confidence 4678999999999999999988763
No 5
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=49.80 E-value=0.063 Score=30.98 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHh
Q psy3081 199 LIVIFASEHLGLGGAGPLGVIASAFVSS 226 (327)
Q Consensus 199 ~~~~~~ae~~g~~~s~~la~~i~g~~~~ 226 (327)
+..+..+|.+ |.||+++++.+|+..+
T Consensus 4 y~~Yl~AE~~--~lSGIlavv~~Gi~~~ 29 (33)
T 2k3c_A 4 YMAYLSAELF--HLSGIMALIASGVVMR 29 (33)
T ss_dssp STTTGGGSSS--TTTTTTTTTTTTSCCC
T ss_pred HHHHHHHHHh--CcChHHHHHHHHHHHh
Confidence 3456778876 8899999888887654
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.31 E-value=1.9e+02 Score=26.90 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCChHHHHhhhhhhhhhchh-HHHHHHHHHHHHHHHhcCCcH----HHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCC
Q psy3081 42 DLDPPALRRLWSTVLKLGLV-PWAVEAISVVIATHYFLNLPW----IWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAK 116 (327)
Q Consensus 42 e~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~----~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~ 116 (327)
|++.+..+|..++=+..++. +.++. .+.+..++++++... ..|+++..++ ++-.+..+|.+.+ +.+ .+.
T Consensus 369 ~~~~~~~~~~~~ke~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-a~~~g~~~p~~~~--~~~--~DP 442 (473)
T 2zy9_A 369 DLDLRDWRRVFLKEMGVGLLLGLTLS-FLLVGKVYWDGHPLLLPVVGVSLVLIVFF-ANLVGAMLPFLLR--RLG--VDP 442 (473)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCTTSHHHHHHHHHHHHHH-HHHHHTTHHHHHH--HHT--CCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HcC--CCc
Confidence 57766655555554444443 33333 334444455555211 1222222222 2333445676543 121 222
Q ss_pred ChhHHHHHHhhhhhHHHHHHHHH
Q psy3081 117 GIPTLVIAVSGMGDATSVAIFGI 139 (327)
Q Consensus 117 ~~~~~l~~~a~l~D~~~v~l~~~ 139 (327)
.+... --.+.++|+++++.+..
T Consensus 443 a~~s~-p~itt~~D~~g~~~~~~ 464 (473)
T 2zy9_A 443 ALVSN-PLVATLSDVTGLLIYLS 464 (473)
T ss_dssp GGSCH-HHHHHHHHHHHHHHHHH
T ss_pred ccccc-chHHHHHHHHHHHHHHH
Confidence 22211 22456889988666543
No 7
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=23.49 E-value=2.1e+02 Score=25.16 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHhh-ccccchhhhhhcc
Q psy3081 285 VVTRILITVLVAVGSSLNLKEKLFVAF-SWMAKASVQLFLY 324 (327)
Q Consensus 285 ~i~r~~~~~l~~~~~~~~~~e~~~~~~-~~~pr~~v~~al~ 324 (327)
...-+...+..++..|++++|+.-+++ ....+.+.+.++|
T Consensus 238 ~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA 278 (332)
T 3zux_A 238 NGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALA 278 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHH
Confidence 344555566667778999999888877 3345555555443
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=16.47 E-value=3e+02 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=22.3
Q ss_pred HhhccchhhhHHHHHHhhhcCCCCCCChhHHH
Q psy3081 91 IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLV 122 (327)
Q Consensus 91 ~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l 122 (327)
+++..|.+.+.|+..|..++ .|.++++.+..
T Consensus 272 Af~T~SS~AtLPv~m~~~~~-lGv~~~i~~fv 302 (422)
T 2nwl_A 272 AFVTRSSSGTLPVTMRVAKE-MGISEGIYSFT 302 (422)
T ss_dssp HHHHCCHHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred HHHhccHHhHHHHHHHHHHH-cCcCcceeeEE
Confidence 45666667789988876666 78888776654
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.83 E-value=1.6e+03 Score=22.84 Aligned_cols=33 Identities=9% Similarity=-0.080 Sum_probs=16.3
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHhcCCcHH
Q psy3081 49 RRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWI 83 (327)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (327)
.|+++..+.. ..+..++. +.++...+++|.+..
T Consensus 359 ~~s~~~~li~-~~~ip~~~-~~~~~~l~~~g~~ln 391 (1057)
T 4dx5_A 359 LQNFRATLIP-TIAVPVVL-LGTFAVLAAFGFSIN 391 (1057)
T ss_dssp HCCHHHHHHH-HHHHHHHH-HHHHHHHHHTTCCBC
T ss_pred HhhhHHHHHH-HHHHHHHH-HHHHHHHHHhCCcHH
Confidence 3555555432 33344442 344555566776643
No 10
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=3.76 E-value=1.8e+03 Score=18.73 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=4.8
Q ss_pred HHhhhhhhhh
Q psy3081 48 LRRLWSTVLK 57 (327)
Q Consensus 48 l~~~~~~~~~ 57 (327)
++..++..+.
T Consensus 42 l~~~~~~ll~ 51 (301)
T 1xl4_A 42 LTVSWPVFIT 51 (301)
T ss_dssp HHSCHHHHHH
T ss_pred HHhhHHHHHH
Confidence 4455555443
Done!