Query psy3081
Match_columns 327
No_of_seqs 151 out of 1160
Neff 8.7
Searched_HMMs 13730
Date Sat Aug 17 01:12:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3081.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3081hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 24.0 1.3E+02 0.0093 22.1 8.3 90 42-138 71-165 (173)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 13.3 2.1E+02 0.015 23.6 7.2 36 84-122 256-291 (405)
3 d2axtk1 f.23.36.1 (K:10-46) Ph 4.4 2.6E+02 0.019 14.5 2.1 18 243-260 7-26 (37)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 4.3 4.1E+02 0.03 16.0 6.8 19 200-218 55-73 (86)
5 d2c4ba2 g.3.2.1 (A:117-144) Tr 3.6 1.6E+02 0.012 14.0 0.6 11 8-18 15-25 (28)
6 d1mcvi_ g.3.2.1 (I:) Trypsin i 3.3 1.5E+02 0.011 14.2 0.3 11 8-18 16-26 (28)
7 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.2 2.2E+02 0.016 20.4 1.6 19 162-180 167-185 (189)
8 d2gaua1 a.4.5.4 (A:152-232) Tr 3.0 3.6E+02 0.026 15.9 2.3 21 92-112 38-58 (81)
9 d1i5za1 a.4.5.4 (A:138-206) Ca 3.0 3.8E+02 0.027 15.4 2.4 21 92-112 38-58 (69)
10 d2glia5 g.37.1.1 (A:229-257) F 2.9 3E+02 0.022 13.6 1.3 12 43-54 15-26 (29)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=24.00 E-value=1.3e+02 Score=22.06 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=41.0
Q ss_pred CCChHHHHhhhhhhhhhchh-HHHHHHHHHHHHHHHhcCCc----HHHHHHHHhHhhccchhhhHHHHHHhhhcCCCCCC
Q psy3081 42 DLDPPALRRLWSTVLKLGLV-PWAVEAISVVIATHYFLNLP----WIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAK 116 (327)
Q Consensus 42 e~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~----~~~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~ 116 (327)
|++.++.+|..++=...++. +..... ......++..+.. ...+++.....++ -.++..|.+.+ +- +.|.
T Consensus 71 ~i~~~~~~~~l~kE~~vgll~G~~l~~-i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~-~~G~~lPlll~--kl--g~DP 144 (173)
T d2yvxa3 71 DLDLRDWRRVFLKEMGVGLLLGLTLSF-LLVGKVYWDGHPLLLPVVGVSLVLIVFFAN-LVGAMLPFLLR--RL--GVDP 144 (173)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCCSSCHHHHHHHHHHHHHHH-HHHHHHHHHHH--HT--SCCG
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--Hh--CCCh
Confidence 67777777766665555443 333332 2223333322221 2233433333333 34556776643 11 1211
Q ss_pred ChhHHHHHHhhhhhHHHHHHHH
Q psy3081 117 GIPTLVIAVSGMGDATSVAIFG 138 (327)
Q Consensus 117 ~~~~~l~~~a~l~D~~~v~l~~ 138 (327)
....- --.+.++|+.++..+-
T Consensus 145 A~aS~-P~itti~Di~g~~iyf 165 (173)
T d2yvxa3 145 ALVSN-PLVATLSDVTGLLIYL 165 (173)
T ss_dssp GGSCS-TTHHHHHHHHHHHHHH
T ss_pred hhhhh-hHHHHHHHHHHHHHHH
Confidence 11110 1245689999976654
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.30 E-value=2.1e+02 Score=23.62 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=23.5
Q ss_pred HHHHHHhHhhccchhhhHHHHHHhhhcCCCCCCChhHHH
Q psy3081 84 WAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLV 122 (327)
Q Consensus 84 ~alllg~~ls~Ts~~v~~~~l~~l~~~~~~~~~~~~~~l 122 (327)
.+++. +.+..|.+.+.|+..|.. |++|.++++.+..
T Consensus 256 ~~~~~--Af~T~SS~atlP~~~~~~-~~~gv~~~i~~fv 291 (405)
T d2nwwa1 256 DAMLT--AFVTRSSSGTLPVTMRVA-KEMGISEGIYSFT 291 (405)
T ss_dssp HHHHH--HHHHCCTGGGHHHHHHHH-HTTTCCTTTHHHH
T ss_pred chhhe--eeeccccccccHHHHHHH-HHcCCCcccccee
Confidence 34444 455566667789887754 4578888887654
No 3
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.42 E-value=2.6e+02 Score=14.50 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=11.1
Q ss_pred hHHHHHHHH--HHHHHHHHh
Q psy3081 243 TAFEIFWMI--FEPILFGLT 260 (327)
Q Consensus 243 ~~~~~~~~~--~~plfF~~~ 260 (327)
..++++.+. .+|+||...
T Consensus 7 ~~f~PivdvlPiIPv~f~lL 26 (37)
T d2axtk1 7 AIFDPLVDVLPVIPVLFLAL 26 (37)
T ss_dssp GGCHHHHHHGGGHHHHHHHH
T ss_pred hhhchHHHHhccHHHHHHHH
Confidence 345666653 578887654
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=4.31 E-value=4.1e+02 Score=15.99 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.2
Q ss_pred HHHHHHHhhcCCCChHHHH
Q psy3081 200 IVIFASEHLGLGGAGPLGV 218 (327)
Q Consensus 200 ~~~~~ae~~g~~~s~~la~ 218 (327)
......+.+|.+.+++++.
T Consensus 55 ~~~~~L~~~Gi~~t~l~a~ 73 (86)
T d2vv5a3 55 TLIAALGRVGVQTASVIAV 73 (86)
T ss_dssp HHHHHHHTTTCCSTTHHHH
T ss_pred HHHHHHHHhCCCHHHHHHH
Confidence 3344456778888877664
No 5
>d2c4ba2 g.3.2.1 (A:117-144) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=3.56 E-value=1.6e+02 Score=13.98 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=8.6
Q ss_pred hhhheeccccc
Q psy3081 8 LFGAFIGGNSE 18 (327)
Q Consensus 8 l~GillGp~~~ 18 (327)
++|-+-||.++
T Consensus 15 lagcvcgpngf 25 (28)
T d2c4ba2 15 LAGCVCGPNGF 25 (28)
T ss_dssp CTTCEECTTSB
T ss_pred cccceecCCCc
Confidence 57888898764
No 6
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=3.28 E-value=1.5e+02 Score=14.20 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=8.6
Q ss_pred hhhheeccccc
Q psy3081 8 LFGAFIGGNSE 18 (327)
Q Consensus 8 l~GillGp~~~ 18 (327)
++|-+-||.++
T Consensus 16 lagcvcgpngf 26 (28)
T d1mcvi_ 16 LAGCVCGPNGF 26 (28)
T ss_dssp CTTCCBCTTSB
T ss_pred cccceecCCCc
Confidence 67888898764
No 7
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.18 E-value=2.2e+02 Score=20.40 Aligned_cols=19 Identities=37% Similarity=0.816 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy3081 162 IIGLAFGIIWGSLAKVVPE 180 (327)
Q Consensus 162 ~~g~~~g~~~g~l~~~~~~ 180 (327)
..|.+.|.+.+++.++..|
T Consensus 167 l~G~l~G~~~g~~~~~~~k 185 (189)
T d2nr9a1 167 ISGLIVGLIWGFIDSKLRK 185 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3466677777777666544
No 8
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.00 E-value=3.6e+02 Score=15.92 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=15.6
Q ss_pred hhccchhhhHHHHHHhhhcCC
Q psy3081 92 FAAVSPAVVVPCLFKLRSKGY 112 (327)
Q Consensus 92 ls~Ts~~v~~~~l~~l~~~~~ 112 (327)
+..+++..+..+++++++++.
T Consensus 38 ~~G~sretvsr~L~~l~~~gl 58 (81)
T d2gaua1 38 LSNMTVSNAIRTLSTFVSERM 58 (81)
T ss_dssp HTTSCHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHCCC
Confidence 445567778899999987763
No 9
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.98 E-value=3.8e+02 Score=15.40 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=15.3
Q ss_pred hhccchhhhHHHHHHhhhcCC
Q psy3081 92 FAAVSPAVVVPCLFKLRSKGY 112 (327)
Q Consensus 92 ls~Ts~~v~~~~l~~l~~~~~ 112 (327)
+..++...+..+++++++++.
T Consensus 38 ~~G~sRetvsr~L~~l~~~gl 58 (69)
T d1i5za1 38 IVGCSRETVGRILKMLEDQNL 58 (69)
T ss_dssp HHTCCHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHCCC
Confidence 344667778899999887763
No 10
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.89 E-value=3e+02 Score=13.58 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=9.0
Q ss_pred CChHHHHhhhhh
Q psy3081 43 LDPPALRRLWST 54 (327)
Q Consensus 43 ~~~~~l~~~~~~ 54 (327)
.|++.+||+.+.
T Consensus 15 tdPSSLRKH~k~ 26 (29)
T d2glia5 15 TDPSSLRKHVKT 26 (29)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 578888887664
Done!