RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3081
(327 letters)
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 71.6 bits (176), Expect = 6e-14
Identities = 69/316 (21%), Positives = 133/316 (42%), Gaps = 22/316 (6%)
Query: 11 AFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISV 70
+ S + + + + L ++L GL+LD LRR+W ++L L L + A+ +
Sbjct: 46 PGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGI 105
Query: 71 VIATHYFL-NLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMG 129
+ H+ L +P AFL G+I + P V P K V K I T++ S +
Sbjct: 106 GLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIF-----KRVRVPKRIRTILEGESLLN 160
Query: 130 DATSVAIFGIVHSFMFSE------DSLLYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGD 183
D + +F + + + +LL ++ +++GL G + G L + + +G
Sbjct: 161 DGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW 220
Query: 184 PFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSW-SKQGWNIEDNPVA 242
+ ++ LL + A LG +G L V+ + V + ++
Sbjct: 221 TSPLLETLLTLLLAFAAYLLAEA---LGVSGILAVVVAGLVLGEAVRINLSPASARLRLS 277
Query: 243 TAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILITVLVAVGS--- 299
+ +E+ + +LF L G Q LS L + + ++ ++ R L L GS
Sbjct: 278 SFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLK 337
Query: 300 ---SLNLKEKLFVAFS 312
L +E+LF++++
Sbjct: 338 LRDPLPWRERLFLSWA 353
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 64.9 bits (159), Expect = 8e-12
Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 18/285 (6%)
Query: 32 LVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVE-AISVVIATHYFLNLPWIWAFLTGS 90
L ++L AGL+LD LR+ ++L L L+ + + +++A L +P + A L G+
Sbjct: 55 LPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLEALLFGA 114
Query: 91 IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSL 150
+A SP VV+ L + + + TL++ S + DA +V + ++ + +
Sbjct: 115 ALSATSPVVVLAILKERG----RLNTRLGTLILGESVLNDAVAVVLLAVLLAL--AGVGG 168
Query: 151 LYNIVLGPSSLIIGLAFGIIWGSLAKVVPEKGDPF---VVPLRIIMLLGGGLIVIFASEH 207
L ++ L ++ G++ G + + F L ++++L L+ +E
Sbjct: 169 LSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAEL 228
Query: 208 LGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLS 267
LGL G LG + V S + + P F P+ F G LS
Sbjct: 229 LGLSGI--LGAFLAGLVLSNYAFANELSEKLEPFGYGL------FLPLFFVSVGLSLDLS 280
Query: 268 ELDPQIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFS 312
L ++ + ++++ ++ ++L L+A L+L+E L V F
Sbjct: 281 SLLLSLLLLVLLLLVAILLGKLLGVFLLARLLGLSLREALIVGFG 325
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 35.2 bits (82), Expect = 0.043
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 17/148 (11%)
Query: 31 ALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGS 90
AL VIL GL + R L L + + A + H+ L L W+ L G+
Sbjct: 66 ALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGA 125
Query: 91 IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSV----------AIFGIV 140
I + A V LR KG + + + + + SG D +V
Sbjct: 126 IVGSTDAAAV---FSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETG 182
Query: 141 HSFMFSEDSLLYNIVLGPSSLIIGLAFG 168
S+ F L LG +IGL G
Sbjct: 183 LSWGFLL-LFLQQFGLG---ALIGLLGG 206
>gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent)
[Amino acid transport and metabolism].
Length = 330
Score = 33.4 bits (77), Expect = 0.14
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 9 FGAFIGGNSEMVLDEFSSYRKMALVVILTRAG---LDLDPPALRRLWSTVLKLGLVPWAV 65
F + E+ D + R V L AG + +D PALR + WAV
Sbjct: 142 FNRYYISREELAKDIALALRD--EVKDLEDAGIKIIQIDEPALREGLPLRRDDDYLEWAV 199
Query: 66 EAISVVIA 73
EAI++ A
Sbjct: 200 EAINLAAA 207
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 32.9 bits (76), Expect = 0.16
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 23/66 (34%)
Query: 11 AFIGGNSEMVLDEFSSYRKMALVVILTRAGLDLDPPALRR-LWSTVLKLGLVPWAVEAIS 69
A IGG S ++LDE +S GLD PA RR +W +L++ + S
Sbjct: 147 ALIGGPSVLLLDEPTS-------------GLD---PASRRAIWDLILEV------RKGRS 184
Query: 70 VVIATH 75
+++ TH
Sbjct: 185 IILTTH 190
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family. [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 273
Score = 32.2 bits (74), Expect = 0.31
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 32 LVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSI 91
+++++ GL+LD L +L +G++ V + + + + L L A + G I
Sbjct: 51 VILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGII 110
Query: 92 FAAVSPAVVV 101
A S AVVV
Sbjct: 111 LALSSTAVVV 120
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 31.6 bits (72), Expect = 0.60
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 30 MALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTG 89
+AL +IL G + R L L + + + +A Y LNL W+ L G
Sbjct: 66 LALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIG 125
Query: 90 SIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDS 149
+I + A V L G + + + + + SG D +A+F + +
Sbjct: 126 AIVGSTDAAAVFSLL-----GGKNLNERVASTLEIESGSND--PMAVFLTI--------T 170
Query: 150 LLYNIVLGPSSLIIGLAFGIIW 171
L+ I G ++L G G +
Sbjct: 171 LIELIAGGETNLSWGFLLGFLQ 192
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 31.1 bits (71), Expect = 0.84
Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 23/281 (8%)
Query: 39 AGLDLDPPALRR-LWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAVSP 97
GL+ D L++ S L + V + ++ L L I A G+ A S
Sbjct: 73 IGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSST 132
Query: 98 AVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIV-- 155
A+V+ L +L L++ D ++ + IV + + I+
Sbjct: 133 AIVLKILMELGLLKTREG----QLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGL 188
Query: 156 LGPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLG---G 212
L + L + L + L I+ +L L + +E LGL G
Sbjct: 189 LLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELLGLSMILG 248
Query: 213 AGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIF-WMIFEPILFGLTGTQFKLSELDP 271
A G++ S + + E F +F P+ F G L L
Sbjct: 249 AFLAGLLLSESE-----------YRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE 297
Query: 272 QIVSIAAIIVIGGVVTRILITVLVAVGSSLNLKEKLFVAFS 312
++ I ++ + ++ +IL L A + + L +
Sbjct: 298 NLLLILLLVAL-AILGKILGAYLAARLLGFSKRLALGIGLL 337
>gnl|CDD|180801 PRK07033, PRK07033, hypothetical protein; Provisional.
Length = 427
Score = 30.8 bits (70), Expect = 1.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 44 DPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGSIFAAV 95
D P R L + L W A+++++A F+ L W A + +FAA+
Sbjct: 216 DVPVARVLLRPTVPL----WVCVALALLLALLLFIGLRWRLADRSDPVFAAI 263
>gnl|CDD|239695 cd03725, SOCS_ASB6, SOCS (suppressors of cytokine signaling) box
of ASB6-like proteins. ASB family members have a
C-terminal SOCS box and an N-terminal ankyrin-related
sequence. ASB6 interacts with the adaptor protein APS
and recruits elongin B/C to the insulin receptor
signaling complex. The general function of the SOCS box
is the recruitment of the ubiquitin-transferase system.
The SOCS box interacts with Elongins B and C, Cullin-5
or Cullin-2, Rbx-1, and E2. Therefore,
SOCS-box-containing proteins probably function as E3
ubiquitin ligases and mediate the degradation of
proteins associated through their N-terminal regions.
Length = 44
Score = 27.0 bits (60), Expect = 2.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 45 PPALRRLWSTVLKLGLVPWAVEA 67
PP L+ L ++L L PW V+
Sbjct: 3 PPPLKHLCRVFIRLCLRPWPVDV 25
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 29.0 bits (66), Expect = 3.3
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 172 GSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHL---GLGGAGPL----GVIASAFV 224
G+ P + L + L GG+++I E + G+G L GV + FV
Sbjct: 133 GAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFV 192
Query: 225 SSYSWSKQGWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGG 284
++W G +F I G L+ ++ + IVI
Sbjct: 193 GLFNWLTGG-------QGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLGLITTIVIFL 245
Query: 285 VV 286
+V
Sbjct: 246 IV 247
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 29.4 bits (66), Expect = 3.3
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 85 AFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSF- 143
L GS+ +AV P V+ + V + + ++ S + DA +V ++ F
Sbjct: 134 NLLFGSLISAVDPVAVLAVFEEYH-----VNEKLYIIIFGESLLNDAVTVVLYNTFIKFH 188
Query: 144 -MFSEDSLLYNIVLGPSSLII----GLAFGIIWGSLA 175
E + ++ G +S + GL G+++G L
Sbjct: 189 KTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLV 225
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 29.4 bits (66), Expect = 3.4
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 111 GYGVAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLG--PSSLIIGLAF 167
GY A G +V+ SG G AT+ I GI ++M DS+ ++ G PS+LI AF
Sbjct: 60 GYARATGKVGVVLVTSGPG-ATN-TITGIATAYM---DSIPMVVLSGQVPSNLIGNDAF 113
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family. At least
five major families of cryptochomes and photolyases
share FAD cofactor binding, sequence homology, and the
ability to react to short wavelengths of visible light.
Photolysases are responsible for light-dependent DNA
repair by removal of two types of uv-induced DNA
dimerizations. Cryptochromes have other functions, often
regulatory and often largely unknown, which may include
circadian clock entrainment and control of development.
Members of this subfamily are known so far only in
plants; they may show some photolyase activity in vitro
but appear mostly to be regulatory proteins that respond
to blue light.
Length = 475
Score = 29.1 bits (65), Expect = 3.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 22 DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY--FLN 79
+ F ++R+ R G L +R LW+T W + I VV+++ + L
Sbjct: 315 NYFKAWRQ-------GRTGYPLVDAGMRELWAT-------GWLHDRIRVVVSSFFVKVLQ 360
Query: 80 LPWIW 84
LPW W
Sbjct: 361 LPWRW 365
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 28.6 bits (64), Expect = 5.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 91 IFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIAVSGM 128
IFA +S AVV+P L KL +GY LV+ SG+
Sbjct: 319 IFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGL 356
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 28.5 bits (63), Expect = 5.5
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 233 GWNIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQIVSIAAIIVIGGVVTRILIT 292
G NP A ++F+ + PI F F + EL+P + ILI
Sbjct: 68 GTCFLKNPTAL-IKLFYGVEAPIFFICLLRLFLIRELNPA-------------SSHILIN 113
Query: 293 VLVAV 297
+ +A+
Sbjct: 114 IGIAI 118
>gnl|CDD|236764 PRK10808, PRK10808, outer membrane protein A; Reviewed.
Length = 351
Score = 28.1 bits (63), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 112 YGVAKGIPTLVIAVSGMGDATSV 134
Y V+KGIP I+ GMG + V
Sbjct: 289 YLVSKGIPADKISARGMGKSNPV 311
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 28.1 bits (62), Expect = 9.3
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 65 VEAISVVIATHYFLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRSKGYGVAKGIPTLVIA 124
++ IS V T Y W+ FL + AVS +VV + K Y + +P LV
Sbjct: 1712 LQFISGVSPTTY-----WLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVAL 1766
Query: 125 VSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGL 165
+ G A ++ SF+F S Y + L ++L IG+
Sbjct: 1767 LMLYGWAVIPMMYPA--SFLFDVPSTAY-VALSCANLFIGI 1804
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.434
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,638,428
Number of extensions: 1857942
Number of successful extensions: 3172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3106
Number of HSP's successfully gapped: 253
Length of query: 327
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 230
Effective length of database: 6,635,264
Effective search space: 1526110720
Effective search space used: 1526110720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)