RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3081
(327 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-10
Identities = 73/406 (17%), Positives = 133/406 (32%), Gaps = 129/406 (31%)
Query: 2 NKHLFSLFGAFIG-GNSEMVLDE----FSSYRKMALVVILTRAGLDL-----DPPALRRL 51
N L ++FG G GN++ +E + +Y + + ++ + L ++
Sbjct: 153 NAQLVAIFG---GQGNTDDYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKV 208
Query: 52 WSTVLK----------------LGLVPWAVEAISVVIATHYFL----------NLPWIWA 85
++ L L +P + I V+ HY + L
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 86 FLTG---SIFAAVSPAV-------------VVPCLFK--LRS-KGYGVA----------- 115
TG + AV+ A + LF +R + Y
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 116 ---KGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSL---LYN-----IVLG-PSSLII 163
+G+P+ ++++S + +S + + + L N +V G P SL
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-Y 387
Query: 164 GLAFGIIWGSLAKV-VPEKGDPFVVPL--RIIMLLGGGLIVIFASEH--LGLGGAGPLGV 218
GL +L K P D +P R + L + + H L L A L +
Sbjct: 388 GLNL-----TLRKAKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHL-LVPASDL-I 439
Query: 219 IASAFVSSYSWSKQGWNIEDNPV-AT-------------AFEIFWMIF-EPILFGLTGTQ 263
++ S++ + I PV T + I I P+ + T TQ
Sbjct: 440 NKDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT-TQ 495
Query: 264 FKLS---ELDPQIVSIAAIIVIGGVVTRIL----ITVLVAVGSSLN 302
FK + + P S +G + R + V+VA +L+
Sbjct: 496 FKATHILDFGPGGAS-----GLGVLTHRNKDGTGVRVIVA--GTLD 534
Score = 56.2 bits (135), Expect = 7e-09
Identities = 62/362 (17%), Positives = 111/362 (30%), Gaps = 100/362 (27%)
Query: 22 DEFSSYRKMALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVV-------IAT 74
++F+ L D +P L L G V VE V +
Sbjct: 35 EQFNK----ILPEPTEGFAADDEPTTPAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCL 88
Query: 75 HYFLNLPWIWAFLTGS-I--FAAVSPAVVVPCLFKLRS--KGYGVAKGI----------P 119
F N +L G+ I AA L K + K Y A+ +
Sbjct: 89 TEFEN-----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 120 TLVIAVSGMGDATSVAIFG---------------------IVHSFMFSEDSLLYNIVLGP 158
L AV G+A VAIFG +V + L ++
Sbjct: 144 ALFRAVGE-GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 159 SSL--IIGLAFGII-WGSLAKVVPEKGD----PFVVPLRIIMLLGGGLIVIFASEHLGL- 210
+ I+ W P+K P PL I ++ V+ A + LG
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTA-KLLGFT 259
Query: 211 ---------GGAGPL-GVIASAFVS-SYSWSKQGWNIEDNPVATAFEI-FWMIFEPILFG 258
G G G++ + ++ + SW + + V A + F++ G
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVS-VRKAITVLFFI-------G 307
Query: 259 LTGTQ-FKLSELDPQIVSIAA---------IIVIGGVVTRILITVLVAVGSSLNLKEKLF 308
+ + + + L P I+ + ++ I + + + S L +++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 309 VA 310
++
Sbjct: 368 IS 369
Score = 35.4 bits (81), Expect = 0.032
Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 87/219 (39%)
Query: 131 ATSVAIF------GIV--------HSFMFSEDSLLYNIVLGP-SSLIIGLAFGIIWGSLA 175
A F G++ HS LG ++L LA ++ S+
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHS-------------LGEYAAL-ASLA-DVM--SIE 1780
Query: 176 KVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWN 235
+V VV R G+ + A G G+IA
Sbjct: 1781 SLVE------VVFYR-------GMTMQVAVPR-DELGRSNYGMIA--------------- 1811
Query: 236 IEDNPVATAF--EIFWMIFEPILFGLTGTQFKLSELDPQIVSIA------AIIVIGGVVT 287
I VA +F E + E + + +V I V G
Sbjct: 1812 INPGRVAASFSQEALQYVVERV-----------GKRTGWLVEIVNYNVENQQYVAAG--D 1858
Query: 288 RILITVLVAVGSSLNLK----EKLFVAFSWMAKASVQLF 322
+ + V + + L+ +L + S + + LF
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLF 1896
Score = 27.7 bits (61), Expect = 7.0
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 77/210 (36%)
Query: 127 GMG----DATSVA--IF-----GIVHSFMFSEDSLLYNIVLG-PSSLIIGLAFGIIWGSL 174
GMG + A ++ ++ FS + +IV+ P +L I FG
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFS----ILDIVINNPVNLTI--HFG------ 1677
Query: 175 AKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGW 234
EKG RI +IF + G + + +SY++ +
Sbjct: 1678 ----GEKG------KRIRENYSA---MIFETIVDGKLKTEKIFKEINEHSTSYTFRSE-- 1722
Query: 235 NIEDNPVATAFEIFWMIFEPILFGLTGTQFKLSELDPQI--VSIAAIIVI---GGVVTRI 289
+ AT F TQ P + + AA + G +
Sbjct: 1723 --KGLLSATQF----------------TQ-------PALTLMEKAAFEDLKSKGLIPADA 1757
Query: 290 LI--------TVLVAVGSSLNLKEKLFVAF 311
L ++ ++++ + V F
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVF 1787
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.019
Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 77/184 (41%)
Query: 35 ILTRAGLD--LDPP----ALRRLWSTVLKLG--LVPWAVEAISVVIATHYFLNLPWIWA- 85
IL++ +D + RL+ T+L +V VE V+ +Y ++ +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINY----KFLMSP 97
Query: 86 ----------------------FLTGSIFAAVSPAVVVP----------CLFKLRSKGYG 113
+ +FA + V L +LR
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKN- 152
Query: 114 VAKGIPTLVIAVSGMGDATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGS 173
+ + G+ G + + V + + F I W +
Sbjct: 153 ---------VLIDGVLG------SG---------KTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 174 LAKV 177
L
Sbjct: 189 LKNC 192
Score = 32.9 bits (74), Expect = 0.15
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Query: 196 GGGLIVIFASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVATAFEIFWM 250
+++ G+ G+G +A SY ++ F+IFW+
Sbjct: 150 AKNVLI-----D-GVLGSGK-TWVALDVCLSYK-------VQCKM---DFKIFWL 187
Score = 30.6 bits (68), Expect = 0.82
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 77 FLNLPWIWAFLTGSIFAAVSPAVVVPCLFKLRS-KGYGVAKGIPTLVIAVSGMGDATSVA 135
FL+ ++ + A + ++ L +L+ K Y + P V+ + D
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILD----- 550
Query: 136 IFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAF 167
F+ + N++ + ++ +A
Sbjct: 551 -------FLPKIEE---NLICSKYTDLLRIAL 572
Score = 28.7 bits (63), Expect = 3.3
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 5 LFSLFGAFIGGNSEMV--LDEFSSYRKMALVVILTRAGLD-LDPPALRRLWSTVLKLGLV 61
S+ I + + D + L I+ + L+ L+P R+++ +L +
Sbjct: 329 RLSIIAESI---RDGLATWDNWKHVNCDKLTTII-ESSLNVLEPAEYRKMF---DRLSVF 381
Query: 62 P 62
P
Sbjct: 382 P 382
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.13
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 20/69 (28%)
Query: 167 FGIIWGS----------LAKVVPEKGD---PFVVPLRIIMLLGGGLIVIFASEHLGLGGA 213
G GS + K + + I + + ++ + +
Sbjct: 1044 VGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINT-MSAWVNMLL------ISSS 1096
Query: 214 GPLGVIASA 222
GP+ A
Sbjct: 1097 GPIKTPVGA 1105
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 29.2 bits (66), Expect = 1.6
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 259 LTGTQFKLSELDPQIVSIAAIIVIGGVVTRI 289
L + P++ + ++++G TR
Sbjct: 211 SVVE---LRDATPEMADMRTVVLVGNAATRR 238
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 29.4 bits (65), Expect = 2.0
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 133 SVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWGSLAK--VVPEKGDPFVVPLR 190
S A + + + D NI++ + + FG K + PFV+
Sbjct: 923 SCAGYCVATFILGIGDRHNSNIMVKDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQD 982
Query: 191 IIMLLGGGLIVIFASEH 207
++++ G +
Sbjct: 983 FLIVISKGAQECTKTRE 999
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein;
3.30A {Streptococcus phage C1}
Length = 465
Score = 29.1 bits (64), Expect = 2.2
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 204 ASEHLGLGGAGPLGVIASAFVSSYSWSKQGWNIEDNPVAT 243
S + G+ A + + WS I + PV T
Sbjct: 351 YSTGDPMLPLIGDGMNAHSIHLGWDWSIANTGIVNYPVGT 390
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 28.4 bits (64), Expect = 3.6
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 8/134 (5%)
Query: 161 LIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEHL---GLGGAGPL- 216
+ A I G V + L I+ L GG+++I E + G+G L
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSKWGIGSGISLF 180
Query: 217 ---GVIASAFVSSYSWSKQGWNIEDNPVATAFE-IFWMIFEPILFGLTGTQFKLSELDPQ 272
GV + S + I+ A + IL G P
Sbjct: 181 IAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAPD 240
Query: 273 IVSIAAIIVIGGVV 286
++S+ A IV+ +V
Sbjct: 241 MLSVVATIVVFFIV 254
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 28.0 bits (63), Expect = 3.7
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Query: 31 ALVVILTRAGLDLDPPALRRLWSTVLKLGLVPWAVEAISVVIATHYFLNLPWIWAFLTGS 90
LV+ T A L R+ + + + A + + +
Sbjct: 120 RLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFR-A 178
Query: 91 IFAAVSPAVVVPCLFKLRSKGY-GVAKGI--PTLVIAVSGMGD-ATSVA 135
+ A + + +R I PTLVIA G D T+ +
Sbjct: 179 MLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIA--GAYDTVTAAS 225
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 27.8 bits (62), Expect = 4.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 266 LSELDPQIVSIAAIIVIGGVVTRI 289
L L + +VIG +R
Sbjct: 227 LEGLREAEAGMLTTVVIGNRQSRF 250
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics,
PSI-2, protein STRU initiative; NMR {Archaeoglobus
fulgidus}
Length = 161
Score = 27.5 bits (60), Expect = 4.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 157 GPSSLIIGLAFGIIWGSLAKVVPEKGDPFVVPLRIIMLLGGGLIVIFASEH 207
G S I+G+ + I + + + D FV P + L G+ +F H
Sbjct: 21 GHMSKIVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSH 71
>3rpd_A Methionine synthase (B12-independent); structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Length = 357
Score = 28.1 bits (63), Expect = 4.5
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 17/53 (32%)
Query: 36 LTRAGLD---LDPPALRRLWSTVLKLGLVPWAVEAI---------SVVIATHY 76
L AG+D D PA + V W + + + Y
Sbjct: 180 LEAAGVDIIQFDEPAFNVFFDEVND-----WGIACLERAIEGLKCETAVHICY 227
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 26.7 bits (60), Expect = 10.0
Identities = 5/34 (14%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 43 LDPPALRRLWSTVLKLGLVPWAVEAISVVIATHY 76
LD R + + + + E +++++++H
Sbjct: 177 LDVLNAREVRKILKQA-----SQEGLTILVSSHN 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.434
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,243,094
Number of extensions: 340646
Number of successful extensions: 779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 44
Length of query: 327
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 233
Effective length of database: 4,077,219
Effective search space: 949992027
Effective search space used: 949992027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.4 bits)