RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3081
         (327 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 31.6 bits (71), Expect = 0.11
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 131 ATSVAIFGIVHSFMFSEDSLLYNIVLGPSSLIIGLAFGIIWG---SLAKVVPEKGDPFVV 187
             S A + +    +   D    NI++  +  +  + FG I G   S   +  E+  PFV+
Sbjct: 204 VYSCAGYCVATFVLGIGDRHNDNIMISETGNLFHIDFGHILGNYKSFLGINKER-VPFVL 262

Query: 188 PLRIIMLLGGG 198
               + ++G  
Sbjct: 263 TPDFLFVMGTS 273


>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2
           protein PsbD2 {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 340

 Score = 27.5 bits (61), Expect = 2.6
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 118 IPTLVIAVSGMGDATSVAIFGIVHSFMFS--EDSLLYNIVLGPSSLIIGLAFGIIWGSLA 175
            P   +A+ G    T+       H    S  E      + +   +  +G +  ++WG  A
Sbjct: 26  FPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEA 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,238,139
Number of extensions: 58976
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 12
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)