Query psy3086
Match_columns 90
No_of_seqs 116 out of 1220
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 01:17:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00135 COesterase: Carboxyle 99.9 2.6E-28 5.6E-33 178.2 2.8 83 4-89 104-192 (535)
2 COG2272 PnbA Carboxylesterase 99.9 1.4E-26 3E-31 169.4 7.2 82 3-89 74-164 (491)
3 KOG4389|consensus 99.9 5.2E-24 1.1E-28 156.0 5.7 82 3-89 115-202 (601)
4 cd00312 Esterase_lipase Estera 99.9 4.2E-23 9.1E-28 151.2 7.9 83 4-89 74-160 (493)
5 KOG1516|consensus 99.9 6.7E-23 1.5E-27 151.8 6.0 82 4-89 92-179 (545)
6 KOG1515|consensus 99.7 1E-16 2.2E-21 114.2 6.5 76 5-89 70-149 (336)
7 COG0657 Aes Esterase/lipase [L 99.2 2.1E-11 4.5E-16 85.2 4.9 59 9-71 64-124 (312)
8 PRK10162 acetyl esterase; Prov 99.2 8.7E-11 1.9E-15 82.8 6.3 55 9-70 69-125 (318)
9 PF07859 Abhydrolase_3: alpha/ 98.9 5.4E-10 1.2E-14 73.5 1.5 39 31-69 1-41 (211)
10 KOG4627|consensus 98.0 1.9E-05 4E-10 53.9 5.1 55 9-71 56-111 (270)
11 KOG4388|consensus 97.6 8.7E-05 1.9E-09 57.0 3.9 44 27-70 395-440 (880)
12 COG1506 DAP2 Dipeptidyl aminop 97.3 0.0011 2.4E-08 50.9 6.6 43 25-68 391-434 (620)
13 TIGR01840 esterase_phb esteras 97.2 0.00044 9.5E-09 45.9 3.8 51 12-67 2-53 (212)
14 PF10340 DUF2424: Protein of u 97.0 0.00064 1.4E-08 49.6 3.3 48 26-75 120-175 (374)
15 PF03403 PAF-AH_p_II: Platelet 96.8 0.0019 4.1E-08 47.1 4.1 40 26-69 98-139 (379)
16 KOG3847|consensus 96.2 0.0073 1.6E-07 43.7 3.8 44 22-69 112-157 (399)
17 TIGR02821 fghA_ester_D S-formy 95.7 0.025 5.5E-07 38.9 4.9 52 8-66 26-81 (275)
18 PF10503 Esterase_phd: Esteras 95.6 0.015 3.2E-07 39.6 3.2 49 10-65 2-54 (220)
19 PLN02442 S-formylglutathione h 95.5 0.03 6.5E-07 38.9 4.6 55 8-66 31-86 (283)
20 PLN00021 chlorophyllase 95.1 0.055 1.2E-06 38.5 4.9 48 9-66 39-88 (313)
21 PF03991 Prion_octapep: Copper 94.0 0.022 4.9E-07 19.1 0.4 6 35-40 2-7 (8)
22 PRK10115 protease 2; Provision 93.6 0.19 4.1E-06 39.4 5.4 41 26-68 443-485 (686)
23 PRK10566 esterase; Provisional 93.0 0.22 4.7E-06 33.2 4.4 38 26-67 25-64 (249)
24 COG4099 Predicted peptidase [G 92.0 0.28 6.1E-06 35.5 4.0 31 7-40 172-203 (387)
25 TIGR00976 /NonD putative hydro 91.1 0.92 2E-05 34.4 6.2 52 8-66 8-62 (550)
26 PF12740 Chlorophyllase2: Chlo 90.9 0.22 4.8E-06 34.9 2.5 45 11-65 6-52 (259)
27 PLN02298 hydrolase, alpha/beta 90.1 1.2 2.6E-05 31.1 5.7 37 26-66 57-96 (330)
28 PF02129 Peptidase_S15: X-Pro 89.6 0.62 1.3E-05 32.0 3.9 60 8-76 4-72 (272)
29 PLN02385 hydrolase; alpha/beta 89.6 0.69 1.5E-05 32.7 4.2 37 26-66 85-124 (349)
30 PRK10439 enterobactin/ferric e 89.4 0.5 1.1E-05 34.9 3.5 53 9-65 194-249 (411)
31 PF00756 Esterase: Putative es 89.3 0.29 6.3E-06 32.7 2.1 31 7-40 6-37 (251)
32 PHA02857 monoglyceride lipase; 87.9 1.4 3E-05 29.7 4.7 48 8-66 12-61 (276)
33 PF12695 Abhydrolase_5: Alpha/ 86.6 0.63 1.4E-05 28.0 2.2 35 30-68 1-37 (145)
34 PF05448 AXE1: Acetyl xylan es 86.5 0.79 1.7E-05 32.8 2.9 51 8-66 68-118 (320)
35 KOG2564|consensus 86.3 1.2 2.5E-05 32.1 3.6 53 8-66 59-111 (343)
36 PF12146 Hydrolase_4: Putative 86.0 0.89 1.9E-05 25.9 2.5 48 8-66 3-52 (79)
37 KOG3101|consensus 81.4 3.8 8.3E-05 28.6 4.4 56 6-66 25-83 (283)
38 TIGR03101 hydr2_PEP hydrolase, 81.1 2.5 5.4E-05 29.5 3.5 40 26-66 23-65 (266)
39 TIGR03100 hydr1_PEP hydrolase, 80.0 4.9 0.00011 27.5 4.7 37 29-66 28-66 (274)
40 KOG2100|consensus 79.6 7.3 0.00016 31.2 6.0 44 25-69 523-570 (755)
41 PLN02652 hydrolase; alpha/beta 79.3 2.8 6.2E-05 30.7 3.5 38 25-66 133-172 (395)
42 PLN02872 triacylglycerol lipas 78.9 4.5 9.8E-05 29.8 4.5 42 26-68 72-118 (395)
43 TIGR03611 RutD pyrimidine util 78.8 2.5 5.5E-05 27.3 2.9 36 26-66 11-48 (257)
44 PRK10985 putative hydrolase; P 78.7 3.5 7.5E-05 29.0 3.7 38 26-66 56-96 (324)
45 TIGR01738 bioH putative pimelo 77.5 6.1 0.00013 25.1 4.4 34 28-66 4-39 (245)
46 PLN02211 methyl indole-3-aceta 74.9 4.1 8.8E-05 28.0 3.1 37 26-66 16-54 (273)
47 TIGR01250 pro_imino_pep_2 prol 73.5 2.8 6.2E-05 27.4 2.0 36 28-66 25-62 (288)
48 PF04083 Abhydro_lipase: Parti 71.6 8.1 0.00018 21.1 3.3 31 7-37 21-52 (63)
49 PF11144 DUF2920: Protein of u 71.6 6.6 0.00014 29.3 3.7 56 2-66 15-74 (403)
50 PRK05077 frsA fermentation/res 70.8 6.4 0.00014 29.0 3.5 37 26-66 192-231 (414)
51 cd00707 Pancreat_lipase_like P 70.7 5.2 0.00011 27.8 2.9 42 25-68 33-77 (275)
52 KOG2281|consensus 70.5 18 0.0004 29.1 5.9 59 5-67 622-686 (867)
53 PF07224 Chlorophyllase: Chlor 69.9 4.7 0.0001 28.8 2.5 38 25-66 43-82 (307)
54 COG3509 LpqC Poly(3-hydroxybut 69.2 9 0.00019 27.7 3.8 37 27-66 60-101 (312)
55 TIGR02427 protocat_pcaD 3-oxoa 69.2 8.2 0.00018 24.5 3.5 35 27-66 12-48 (251)
56 PRK10673 acyl-CoA esterase; Pr 68.5 14 0.0003 24.2 4.5 36 26-66 14-51 (255)
57 PRK00870 haloalkane dehalogena 68.0 5.4 0.00012 27.3 2.5 35 28-66 46-82 (302)
58 COG2819 Predicted hydrolase of 67.6 9.5 0.00021 26.9 3.6 54 10-67 24-77 (264)
59 PLN02511 hydrolase 67.1 11 0.00024 27.4 4.0 38 26-66 98-138 (388)
60 PF02230 Abhydrolase_2: Phosph 65.2 5.3 0.00012 26.3 2.0 15 25-39 11-25 (216)
61 COG2382 Fes Enterochelin ester 64.8 9.6 0.00021 27.4 3.3 57 7-66 80-139 (299)
62 PRK03204 haloalkane dehalogena 63.4 9.7 0.00021 26.1 3.1 34 28-66 34-69 (286)
63 TIGR03695 menH_SHCHC 2-succiny 62.5 9 0.00019 24.2 2.6 33 29-66 2-36 (251)
64 PLN02894 hydrolase, alpha/beta 62.3 8.4 0.00018 28.2 2.7 35 27-66 104-140 (402)
65 PRK10349 carboxylesterase BioH 61.4 10 0.00023 25.1 2.9 34 28-66 13-48 (256)
66 TIGR03343 biphenyl_bphD 2-hydr 60.4 7.4 0.00016 26.0 2.0 37 29-66 31-69 (282)
67 KOG1455|consensus 60.1 17 0.00036 26.3 3.8 38 26-66 52-91 (313)
68 TIGR01249 pro_imino_pep_1 prol 58.3 17 0.00037 25.1 3.6 35 29-66 28-62 (306)
69 TIGR03056 bchO_mg_che_rel puta 58.2 10 0.00022 25.0 2.4 34 28-66 28-63 (278)
70 COG3458 Acetyl esterase (deace 57.3 29 0.00062 25.1 4.5 39 25-66 80-118 (321)
71 PRK11126 2-succinyl-6-hydroxy- 56.8 12 0.00026 24.3 2.5 33 28-66 2-36 (242)
72 PRK11460 putative hydrolase; P 56.3 11 0.00024 25.3 2.3 13 26-38 14-26 (232)
73 PF12697 Abhydrolase_6: Alpha/ 55.6 11 0.00025 23.3 2.2 31 31-66 1-33 (228)
74 PLN02679 hydrolase, alpha/beta 54.4 14 0.0003 26.4 2.7 34 28-66 88-123 (360)
75 PF07082 DUF1350: Protein of u 52.5 14 0.00031 25.9 2.4 37 30-67 18-57 (250)
76 PRK07581 hypothetical protein; 52.5 28 0.0006 24.3 3.9 39 27-66 40-80 (339)
77 PF10142 PhoPQ_related: PhoPQ- 51.5 57 0.0012 24.1 5.5 50 9-63 50-104 (367)
78 PF01738 DLH: Dienelactone hyd 51.3 14 0.0003 24.1 2.2 40 26-69 12-53 (218)
79 TIGR01836 PHA_synth_III_C poly 51.1 57 0.0012 23.0 5.4 17 50-67 88-104 (350)
80 PLN02824 hydrolase, alpha/beta 50.5 22 0.00047 24.1 3.1 39 29-76 30-70 (294)
81 PLN02965 Probable pheophorbida 50.2 23 0.0005 23.6 3.1 33 30-66 5-39 (255)
82 PRK06489 hypothetical protein; 49.6 37 0.0008 24.1 4.2 39 28-66 69-114 (360)
83 PRK10749 lysophospholipase L2; 49.5 16 0.00035 25.7 2.3 36 27-66 53-90 (330)
84 PTZ00472 serine carboxypeptida 49.2 23 0.0005 26.6 3.3 13 25-37 74-86 (462)
85 PLN03087 BODYGUARD 1 domain co 48.1 27 0.0006 26.5 3.5 36 28-66 201-241 (481)
86 TIGR02240 PHA_depoly_arom poly 48.1 22 0.00048 23.9 2.8 33 29-66 26-60 (276)
87 PF12715 Abhydrolase_7: Abhydr 46.9 29 0.00063 25.9 3.4 54 7-66 99-169 (390)
88 PRK05855 short chain dehydroge 46.4 20 0.00043 26.6 2.5 34 28-66 25-60 (582)
89 PRK03592 haloalkane dehalogena 45.8 22 0.00048 24.1 2.5 39 29-76 28-68 (295)
90 COG2939 Carboxypeptidase C (ca 43.3 39 0.00084 26.1 3.6 28 11-41 87-114 (498)
91 PLN03084 alpha/beta hydrolase 42.3 29 0.00062 25.5 2.8 34 28-66 127-162 (383)
92 PF14041 Lipoprotein_21: LppP/ 42.0 13 0.00028 21.5 0.8 37 29-66 26-63 (89)
93 KOG4391|consensus 42.0 38 0.00082 23.9 3.1 47 25-76 75-121 (300)
94 COG4188 Predicted dienelactone 41.9 60 0.0013 24.1 4.3 56 8-67 51-108 (365)
95 PF00450 Peptidase_S10: Serine 41.9 26 0.00056 25.1 2.5 13 25-37 37-49 (415)
96 TIGR03502 lipase_Pla1_cef extr 38.6 33 0.00072 27.9 2.8 37 26-66 447-485 (792)
97 KOG1552|consensus 38.3 44 0.00096 23.6 3.1 45 26-76 58-103 (258)
98 COG2936 Predicted acyl esteras 37.1 1.2E+02 0.0025 23.9 5.4 52 8-66 31-89 (563)
99 PRK11675 LexA regulated protei 35.5 10 0.00022 22.5 -0.4 20 1-20 1-20 (90)
100 PF05990 DUF900: Alpha/beta hy 35.5 28 0.00062 23.6 1.8 16 25-40 15-30 (233)
101 KOG3967|consensus 35.2 31 0.00067 24.2 1.9 18 26-43 99-116 (297)
102 KOG2542|consensus 34.7 34 0.00073 25.9 2.1 17 59-77 180-196 (500)
103 PRK14875 acetoin dehydrogenase 33.5 51 0.0011 23.0 2.9 34 28-66 131-166 (371)
104 cd02421 Peptidase_C39_likeD A 31.3 37 0.00081 19.9 1.6 17 25-41 67-83 (124)
105 COG0412 Dienelactone hydrolase 31.0 1.1E+02 0.0024 20.7 4.1 38 29-70 28-69 (236)
106 TIGR02806 clostrip clostripain 29.9 44 0.00096 25.6 2.1 16 26-41 113-128 (476)
107 PF13899 Thioredoxin_7: Thiore 29.9 30 0.00066 19.1 1.0 40 25-66 15-61 (82)
108 PF10686 DUF2493: Protein of u 29.6 28 0.0006 19.4 0.8 13 26-38 29-41 (71)
109 PF03283 PAE: Pectinacetyleste 29.2 50 0.0011 24.1 2.3 19 26-44 48-66 (361)
110 cd05892 Ig_Myotilin_C C-termin 28.2 46 0.001 18.3 1.6 17 25-41 9-25 (75)
111 KOG1282|consensus 27.7 77 0.0017 24.1 3.1 18 25-42 70-87 (454)
112 COG0400 Predicted esterase [Ge 26.5 66 0.0014 21.7 2.3 14 25-38 15-28 (207)
113 KOG0895|consensus 26.4 72 0.0016 27.0 2.9 37 4-47 895-931 (1101)
114 KOG4153|consensus 26.0 54 0.0012 23.6 1.9 14 25-38 254-267 (358)
115 COG3727 Vsr DNA G:T-mismatch r 25.9 49 0.0011 21.2 1.5 18 26-43 55-72 (150)
116 TIGR03230 lipo_lipase lipoprot 25.8 1.1E+02 0.0024 23.2 3.6 40 26-66 39-82 (442)
117 cd02417 Peptidase_C39_likeA A 25.8 51 0.0011 19.2 1.5 17 25-41 67-83 (121)
118 cd02958 UAS UAS family; UAS is 25.2 42 0.00092 19.7 1.1 15 25-39 15-29 (114)
119 COG0596 MhpC Predicted hydrola 25.1 74 0.0016 19.6 2.3 38 28-66 21-59 (282)
120 PF04443 LuxE: Acyl-protein sy 24.5 42 0.00091 24.6 1.2 16 30-45 222-237 (365)
121 PF03852 Vsr: DNA mismatch end 24.1 55 0.0012 18.7 1.4 14 27-40 55-68 (75)
122 PF05577 Peptidase_S28: Serine 23.4 41 0.00089 24.6 1.0 56 7-66 12-68 (434)
123 PRK11071 esterase YqiA; Provis 23.1 53 0.0011 21.3 1.3 36 28-66 1-41 (190)
124 KOG3703|consensus 22.6 29 0.00062 27.6 0.0 26 62-87 154-194 (873)
125 cd05855 Ig_TrkB_d5 Fifth domai 22.5 51 0.0011 18.5 1.0 19 25-43 9-27 (79)
126 TIGR01607 PST-A Plasmodium sub 22.4 2.5E+02 0.0054 19.8 4.8 16 50-66 68-83 (332)
127 TIGR00632 vsr DNA mismatch end 22.1 69 0.0015 19.8 1.6 16 25-40 53-68 (117)
128 PF03415 Peptidase_C11: Clostr 22.0 30 0.00066 25.5 0.0 14 26-39 97-110 (397)
129 TIGR00706 SppA_dom signal pept 21.7 73 0.0016 21.1 1.8 42 27-75 61-102 (207)
130 COG3531 Predicted protein-disu 21.7 96 0.0021 21.2 2.3 20 29-48 30-49 (212)
131 KOG0429|consensus 21.7 1.6E+02 0.0035 20.6 3.4 28 4-34 62-89 (258)
132 PF00326 Peptidase_S9: Prolyl 21.6 89 0.0019 20.1 2.2 19 50-69 8-26 (213)
133 PF05576 Peptidase_S37: PS-10 20.6 1.6E+02 0.0035 22.5 3.5 56 26-90 61-118 (448)
134 PLN02578 hydrolase 20.3 99 0.0021 21.9 2.4 33 29-66 87-121 (354)
135 COG4843 Uncharacterized protei 20.3 32 0.0007 22.3 -0.1 11 33-43 162-172 (179)
136 PLN02209 serine carboxypeptida 20.1 1.5E+02 0.0033 22.2 3.4 13 25-37 65-77 (437)
No 1
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.94 E-value=2.6e-28 Score=178.24 Aligned_cols=83 Identities=34% Similarity=0.604 Sum_probs=63.0
Q ss_pred cceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCC--CCCcHHHhcCCCeEEEEeCCCCCCccCccCCC---C
Q psy3086 4 TQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLGKLIIVK---K 78 (90)
Q Consensus 4 ~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~--~~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~~---~ 78 (90)
++|+||+||||+|..... ..++||+||||||||..|+.+ .+....++.+.++|+|++|||||+||||.+++ +
T Consensus 104 ~sEDCL~LnI~~P~~~~~---~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~ 180 (535)
T PF00135_consen 104 QSEDCLYLNIYTPSNASS---NSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP 180 (535)
T ss_dssp BES---EEEEEEETSSSS---TTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH
T ss_pred CCchHHHHhhhhcccccc---ccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC
Confidence 488999999999998764 338999999999999999983 45666777777899999999999999999986 4
Q ss_pred -Cchhhhhhhhc
Q psy3086 79 -INEGVNDLVFQ 89 (90)
Q Consensus 79 -~n~gl~D~~~a 89 (90)
+|+||+||++|
T Consensus 181 ~gN~Gl~Dq~~A 192 (535)
T PF00135_consen 181 SGNYGLLDQRLA 192 (535)
T ss_dssp BSTHHHHHHHHH
T ss_pred chhhhhhhhHHH
Confidence 99999999987
No 2
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.93 E-value=1.4e-26 Score=169.37 Aligned_cols=82 Identities=34% Similarity=0.614 Sum_probs=73.7
Q ss_pred CcceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC--CCcHHHhcCCCeEEEEeCCCCCCccCccCCC---
Q psy3086 3 KTQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP--YDGSILASYGHLIVVTVNFRLGVLGKLIIVK--- 77 (90)
Q Consensus 3 ~~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~--~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~~--- 77 (90)
+-+|+||+||||.|. .. .+++|||||||||+|..|+... |+++.|+.++++|+|++|||||+||||....
T Consensus 74 ~~sEDCL~LNIwaP~-~~----a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~ 148 (491)
T COG2272 74 TGSEDCLYLNIWAPE-VP----AEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDT 148 (491)
T ss_pred CccccceeEEeeccC-CC----CCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccc
Confidence 468999999999998 22 3569999999999999999985 8899999999999999999999999999985
Q ss_pred ----CCchhhhhhhhc
Q psy3086 78 ----KINEGVNDLVFQ 89 (90)
Q Consensus 78 ----~~n~gl~D~~~a 89 (90)
..|.||+||++|
T Consensus 149 ~~~~~~n~Gl~DqilA 164 (491)
T COG2272 149 EDAFASNLGLLDQILA 164 (491)
T ss_pred cccccccccHHHHHHH
Confidence 369999999987
No 3
>KOG4389|consensus
Probab=99.90 E-value=5.2e-24 Score=155.97 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=72.1
Q ss_pred CcceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCC--CCCcHHHhcCCCeEEEEeCCCCCCccCccCCC---
Q psy3086 3 KTQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLGKLIIVK--- 77 (90)
Q Consensus 3 ~~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~--~~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~~--- 77 (90)
..+|+||+||||+|...+ ...-|+|||.||||..|+++ .|+.+.++..+++|||++|||+||||||.++.
T Consensus 115 ~lSEDCLYlNVW~P~~~p-----~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~e 189 (601)
T KOG4389|consen 115 ELSEDCLYLNVWAPAADP-----YNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPE 189 (601)
T ss_pred CcChhceEEEEeccCCCC-----CCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCC
Confidence 368999999999997432 22339999999999999998 48999999999999999999999999999942
Q ss_pred -CCchhhhhhhhc
Q psy3086 78 -KINEGVNDLVFQ 89 (90)
Q Consensus 78 -~~n~gl~D~~~a 89 (90)
|||-||+||++|
T Consensus 190 aPGNmGl~DQqLA 202 (601)
T KOG4389|consen 190 APGNMGLLDQQLA 202 (601)
T ss_pred CCCccchHHHHHH
Confidence 899999999987
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.89 E-value=4.2e-23 Score=151.15 Aligned_cols=83 Identities=31% Similarity=0.568 Sum_probs=72.5
Q ss_pred cceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcCCC-eEEEEeCCCCCCccCccCCC---CC
Q psy3086 4 TQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGH-LIVVTVNFRLGVLGKLIIVK---KI 79 (90)
Q Consensus 4 ~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~-~ivv~v~YRl~p~Gfl~~~~---~~ 79 (90)
.+|+||+|+||.|.... ..+++|||||||||||..|+...+....++...+ ++||+++|||+++||+...+ ++
T Consensus 74 ~sEdcl~l~i~~p~~~~---~~~~~pv~v~ihGG~~~~g~~~~~~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~ 150 (493)
T cd00312 74 GSEDCLYLNVYTPKNTK---PGNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG 150 (493)
T ss_pred CCCcCCeEEEEeCCCCC---CCCCCCEEEEEcCCccccCCCCCCChHHHHhcCCCEEEEEecccccccccccCCCCCCCc
Confidence 47999999999997543 2467899999999999999988777778887766 99999999999999998875 79
Q ss_pred chhhhhhhhc
Q psy3086 80 NEGVNDLVFQ 89 (90)
Q Consensus 80 n~gl~D~~~a 89 (90)
|+|++||++|
T Consensus 151 n~g~~D~~~a 160 (493)
T cd00312 151 NYGLKDQRLA 160 (493)
T ss_pred chhHHHHHHH
Confidence 9999999987
No 5
>KOG1516|consensus
Probab=99.88 E-value=6.7e-23 Score=151.83 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=71.3
Q ss_pred cceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC---CCcHHHhcCCCeEEEEeCCCCCCccCccCCC---
Q psy3086 4 TQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP---YDGSILASYGHLIVVTVNFRLGVLGKLIIVK--- 77 (90)
Q Consensus 4 ~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~---~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~~--- 77 (90)
.+|+||+||||+|...... + +||+||||||+|..|++.. +.........++|+|+++||||+|||++.++
T Consensus 92 ~sEDCLylNV~tp~~~~~~---~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~ 167 (545)
T KOG1516|consen 92 GSEDCLYLNVYTPQGCSES---K-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAA 167 (545)
T ss_pred CcCCCceEEEeccCCCccC---C-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCC
Confidence 5799999999999877542 3 9999999999999999753 4456677777899999999999999999986
Q ss_pred CCchhhhhhhhc
Q psy3086 78 KINEGVNDLVFQ 89 (90)
Q Consensus 78 ~~n~gl~D~~~a 89 (90)
++|+||+||++|
T Consensus 168 ~gN~gl~Dq~~A 179 (545)
T KOG1516|consen 168 PGNLGLFDQLLA 179 (545)
T ss_pred CCcccHHHHHHH
Confidence 699999999987
No 6
>KOG1515|consensus
Probab=99.67 E-value=1e-16 Score=114.24 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=60.6
Q ss_pred ceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC--CC--cHHHhcCCCeEEEEeCCCCCCccCccCCCCCc
Q psy3086 5 QTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP--YD--GSILASYGHLIVVTVNFRLGVLGKLIIVKKIN 80 (90)
Q Consensus 5 ~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~--~~--~~~la~~~~~ivv~v~YRl~p~Gfl~~~~~~n 80 (90)
+.+.+.++||.|..... .+++|++||||||||+.|++.. |+ +++++.+.++++|+|+|||+| +.+..
T Consensus 70 ~~~~l~vRly~P~~~~~---~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAP------Eh~~P 140 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSSS---ETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAP------EHPFP 140 (336)
T ss_pred CCCCeEEEEEcCCCCCc---ccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCC------CCCCC
Confidence 45578899999887764 3789999999999999999763 43 789999999999999999877 44555
Q ss_pred hhhhhhhhc
Q psy3086 81 EGVNDLVFQ 89 (90)
Q Consensus 81 ~gl~D~~~a 89 (90)
.++.|...|
T Consensus 141 a~y~D~~~A 149 (336)
T KOG1515|consen 141 AAYDDGWAA 149 (336)
T ss_pred ccchHHHHH
Confidence 566666554
No 7
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.20 E-value=2.1e-11 Score=85.16 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=47.6
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC--CcHHHhcCCCeEEEEeCCCCCCcc
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY--DGSILASYGHLIVVTVNFRLGVLG 71 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~--~~~~la~~~~~ivv~v~YRl~p~G 71 (90)
.-+++|.|. .......|+++|+|||||+.|+...+ .+..++...+++|++++|||+|-.
T Consensus 64 ~~~~~y~p~----~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~ 124 (312)
T COG0657 64 VPVRVYRPD----RKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH 124 (312)
T ss_pred eeEEEECCC----CCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC
Confidence 346777771 12245689999999999999999877 367888888899999999999966
No 8
>PRK10162 acetyl esterase; Provisional
Probab=99.16 E-value=8.7e-11 Score=82.79 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=43.4
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCCCc
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLGVL 70 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~p~ 70 (90)
+.+++|.|.. ...|++||+|||||..|+.+.+. ++.++...++.|++++||++|-
T Consensus 69 i~~~~y~P~~-------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape 125 (318)
T PRK10162 69 VETRLYYPQP-------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPE 125 (318)
T ss_pred eEEEEECCCC-------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCC
Confidence 5566666531 23599999999999999987664 5788887789999999999884
No 9
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.89 E-value=5.4e-10 Score=73.48 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=28.7
Q ss_pred EEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCCC
Q psy3086 31 LILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 31 iv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~p 69 (90)
|||||||||+.|+...+. +..++.+.++++++++|||+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p 41 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAP 41 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TT
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccc
Confidence 689999999999988653 577887667999999999887
No 10
>KOG4627|consensus
Probab=97.97 E-value=1.9e-05 Score=53.89 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=41.8
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC-CCcHHHhcCCCeEEEEeCCCCCCcc
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP-YDGSILASYGHLIVVTVNFRLGVLG 71 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~-~~~~~la~~~~~ivv~v~YRl~p~G 71 (90)
-.++||-|+ ..-|+.||||||.|..|+... .....-+.+.++.|+++.|-++|-+
T Consensus 56 q~VDIwg~~--------~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~ 111 (270)
T KOG4627|consen 56 QLVDIWGST--------NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV 111 (270)
T ss_pred eEEEEecCC--------CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc
Confidence 346777653 234799999999999998764 3445555566799999999999977
No 11
>KOG4388|consensus
Probab=97.57 E-value=8.7e-05 Score=56.99 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCCccCCCCCCCc--HHHhcCCCeEEEEeCCCCCCc
Q psy3086 27 PMPALILIHGESYEWNSGNPYDG--SILASYGHLIVVTVNFRLGVL 70 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~~~~--~~la~~~~~ivv~v~YRl~p~ 70 (90)
.+-.+++.|||||+--+...|+. +.++...++.+++|+|.|+|-
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE 440 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE 440 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC
Confidence 34588999999999888877764 678887889999999998873
No 12
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0011 Score=50.89 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCceEEEEEcCCCCccCCCC-CCCcHHHhcCCCeEEEEeCCCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGN-PYDGSILASYGHLIVVTVNFRLG 68 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~-~~~~~~la~~~~~ivv~v~YRl~ 68 (90)
.++.|++||+|||=...-... .+..+.++..+ ++|+.+|||=+
T Consensus 391 ~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G-~~V~~~n~RGS 434 (620)
T COG1506 391 RKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAG-YAVLAPNYRGS 434 (620)
T ss_pred CCCCCEEEEeCCCCccccccccchhhHHHhcCC-eEEEEeCCCCC
Confidence 345899999999953332222 23467777765 99999999933
No 13
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.24 E-value=0.00044 Score=45.85 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEcccCCCCCCCCCCceEEEEEcCCCCccCCCC-CCCcHHHhcCCCeEEEEeCCCC
Q psy3086 12 FFFAFSQNSMDDIGSPMPALILIHGESYEWNSGN-PYDGSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 12 ~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~-~~~~~~la~~~~~ivv~v~YRl 67 (90)
.+|+|... .++.|+||++||++....... ......++++.+++|+.++||-
T Consensus 2 ~ly~P~~~-----~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g 53 (212)
T TIGR01840 2 YVYVPAGL-----TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTS 53 (212)
T ss_pred EEEcCCCC-----CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcC
Confidence 46666553 356899999999986533221 1123456666789999999984
No 14
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.04 E-value=0.00064 Score=49.60 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCCCccCCCCCC-C----cHHHhcCCCeEEEEeCCCCCC---ccCccC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY-D----GSILASYGHLIVVTVNFRLGV---LGKLII 75 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~-~----~~~la~~~~~ivv~v~YRl~p---~Gfl~~ 75 (90)
+.-||++|+|||||..+..... . -..+.. ++.++.++|.|.+ .|+...
T Consensus 120 k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~~yP 175 (374)
T PF10340_consen 120 KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGHKYP 175 (374)
T ss_pred CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCCcCc
Confidence 3359999999999999976532 1 112222 5689999999888 655443
No 15
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=96.81 E-value=0.0019 Score=47.11 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCCccCCCCCC--CcHHHhcCCCeEEEEeCCCCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY--DGSILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~--~~~~la~~~~~ivv~v~YRl~p 69 (90)
.+.|||||-||-| |+...| .|..||+.+ +||+++++|-+.
T Consensus 98 ~~~PvvIFSHGlg---g~R~~yS~~~~eLAS~G-yVV~aieHrDgS 139 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---GSRTSYSAICGELASHG-YVVAAIEHRDGS 139 (379)
T ss_dssp S-EEEEEEE--TT-----TTTTHHHHHHHHHTT--EEEEE---SS-
T ss_pred CCCCEEEEeCCCC---cchhhHHHHHHHHHhCC-eEEEEeccCCCc
Confidence 7799999999977 555556 378999976 999999999865
No 16
>KOG3847|consensus
Probab=96.19 E-value=0.0073 Score=43.66 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCCC
Q psy3086 22 DDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 22 ~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~p 69 (90)
.+++.+.|++||-||=| |+.+.|. |..+|+.+ ++|.++++|-..
T Consensus 112 ~tk~~k~PvvvFSHGLg---gsRt~YSa~c~~LAShG-~VVaavEHRD~S 157 (399)
T KOG3847|consen 112 STKNDKYPVVVFSHGLG---GSRTLYSAYCTSLASHG-FVVAAVEHRDRS 157 (399)
T ss_pred CCCCCCccEEEEecccc---cchhhHHHHhhhHhhCc-eEEEEeecccCc
Confidence 34578899999999966 5566553 78999876 999999999543
No 17
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.73 E-value=0.025 Score=38.94 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.4
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC----CcHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY----DGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~----~~~~la~~~~~ivv~v~YR 66 (90)
.....||.|.... .++.|+|+++||.+ ++...+ ....++.+.+++||.+++.
T Consensus 26 ~~~~~v~~P~~~~----~~~~P~vvllHG~~---~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 26 PMTFGVFLPPQAA----AGPVPVLWYLSGLT---CTHENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred ceEEEEEcCCCcc----CCCCCEEEEccCCC---CCccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 3456777776532 24579999999987 222222 1246766667999999984
No 18
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=95.58 E-value=0.015 Score=39.64 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=34.8
Q ss_pred EEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC----CcHHHhcCCCeEEEEeCC
Q psy3086 10 FIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY----DGSILASYGHLIVVTVNF 65 (90)
Q Consensus 10 ~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~----~~~~la~~~~~ivv~v~Y 65 (90)
.-.+|+|.... ..+.|+||.+||.+-. ++.+ .-..++++.+++++.++-
T Consensus 2 ~Y~lYvP~~~~----~~~~PLVv~LHG~~~~---a~~~~~~s~~~~lAd~~GfivvyP~~ 54 (220)
T PF10503_consen 2 SYRLYVPPGAP----RGPVPLVVVLHGCGQS---AEDFAAGSGWNALADREGFIVVYPEQ 54 (220)
T ss_pred cEEEecCCCCC----CCCCCEEEEeCCCCCC---HHHHHhhcCHHHHhhcCCeEEEcccc
Confidence 45788888543 3468999999999753 2322 235788888999998863
No 19
>PLN02442 S-formylglutathione hydrolase
Probab=95.53 E-value=0.03 Score=38.93 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=33.3
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC-CCcHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP-YDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~-~~~~~la~~~~~ivv~v~YR 66 (90)
...+.||+|.. ..+++.||++++||.+..-..... .....+.+..+++||.++..
T Consensus 31 ~~~~~vy~P~~----~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 31 SMTFSVYFPPA----SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred ceEEEEEcCCc----ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 55677777762 125678999999986532111001 12234555567999999864
No 20
>PLN00021 chlorophyllase
Probab=95.09 E-value=0.055 Score=38.51 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=31.8
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
+-+.|+.|.. ....|++||+||+++. ...+. ...+++. +++|+.++++
T Consensus 39 ~p~~v~~P~~------~g~~PvVv~lHG~~~~---~~~y~~l~~~Las~-G~~VvapD~~ 88 (313)
T PLN00021 39 KPLLVATPSE------AGTYPVLLFLHGYLLY---NSFYSQLLQHIASH-GFIVVAPQLY 88 (313)
T ss_pred ceEEEEeCCC------CCCCCEEEEECCCCCC---cccHHHHHHHHHhC-CCEEEEecCC
Confidence 4455665542 3568999999999864 22332 3566665 5999999965
No 21
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=94.02 E-value=0.022 Score=19.10 Aligned_cols=6 Identities=33% Similarity=0.861 Sum_probs=4.9
Q ss_pred cCCCCc
Q psy3086 35 HGESYE 40 (90)
Q Consensus 35 HGGg~~ 40 (90)
|||+|-
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 899983
No 22
>PRK10115 protease 2; Provisional
Probab=93.61 E-value=0.19 Score=39.36 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLG 68 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~ 68 (90)
.+.|+++++|||-.....+. +. -..+++++ ++|+.+++|=+
T Consensus 443 ~~~P~ll~~hGg~~~~~~p~-f~~~~~~l~~rG-~~v~~~n~RGs 485 (686)
T PRK10115 443 GHNPLLVYGYGSYGASIDAD-FSFSRLSLLDRG-FVYAIVHVRGG 485 (686)
T ss_pred CCCCEEEEEECCCCCCCCCC-ccHHHHHHHHCC-cEEEEEEcCCC
Confidence 45699999999664443332 33 24577764 99999999944
No 23
>PRK10566 esterase; Provisional
Probab=93.03 E-value=0.22 Score=33.16 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=26.4
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl 67 (90)
++.|++|++||.+ ++...+. .+.++.+ ++.++.++||-
T Consensus 25 ~~~p~vv~~HG~~---~~~~~~~~~~~~l~~~-G~~v~~~d~~g 64 (249)
T PRK10566 25 TPLPTVFFYHGFT---SSKLVYSYFAVALAQA-GFRVIMPDAPM 64 (249)
T ss_pred CCCCEEEEeCCCC---cccchHHHHHHHHHhC-CCEEEEecCCc
Confidence 4579999999964 2333332 3566554 59999999994
No 24
>COG4099 Predicted peptidase [General function prediction only]
Probab=92.02 E-value=0.28 Score=35.54 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=22.9
Q ss_pred eeEEEEEEcccCCCCCCCCCC-ceEEEEEcCCCCc
Q psy3086 7 SVIFIFFFAFSQNSMDDIGSP-MPALILIHGESYE 40 (90)
Q Consensus 7 ~~l~l~i~~p~~~~~~~~~~~-~Pviv~iHGGg~~ 40 (90)
..|--++|+|....+ +++ .|.++|+||+|=.
T Consensus 172 neLkYrly~Pkdy~p---dkky~PLvlfLHgagq~ 203 (387)
T COG4099 172 NELKYRLYTPKDYAP---DKKYYPLVLFLHGAGQG 203 (387)
T ss_pred ceeeEEEecccccCC---CCccccEEEEEecCCCC
Confidence 466678888866544 444 4999999999954
No 25
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=91.12 E-value=0.92 Score=34.42 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=34.0
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCC--CC-CcHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGN--PY-DGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~--~~-~~~~la~~~~~ivv~v~YR 66 (90)
.|..+++.|.. .++.|+||++||-+...+... .. ....++.+ ++.++.+++|
T Consensus 8 ~L~~~~~~P~~------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~-Gy~vv~~D~R 62 (550)
T TIGR00976 8 RLAIDVYRPAG------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQ-GYAVVIQDTR 62 (550)
T ss_pred EEEEEEEecCC------CCCCCEEEEecCCCCchhhccccccccHHHHHhC-CcEEEEEecc
Confidence 56777887753 246899999998765332111 11 23455665 5999999999
No 26
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=90.87 E-value=0.22 Score=34.86 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=30.9
Q ss_pred EEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCC
Q psy3086 11 IFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNF 65 (90)
Q Consensus 11 l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~Y 65 (90)
|.|+.|+.. ...||++|+||=. +..+ .|. .+++++-+ +|||.+++
T Consensus 6 l~v~~P~~~------g~yPVv~f~~G~~-~~~s--~Ys~ll~hvAShG-yIVV~~d~ 52 (259)
T PF12740_consen 6 LLVYYPSSA------GTYPVVLFLHGFL-LINS--WYSQLLEHVASHG-YIVVAPDL 52 (259)
T ss_pred eEEEecCCC------CCcCEEEEeCCcC-CCHH--HHHHHHHHHHhCc-eEEEEecc
Confidence 567766654 4589999999866 3222 353 46787754 99999983
No 27
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=90.07 E-value=1.2 Score=31.06 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCccCCCCC-CC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNP-YD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~-~~--~~~la~~~~~ivv~v~YR 66 (90)
...|+||++||.+ ++... +. ...++.. ++.|+.+|+|
T Consensus 57 ~~~~~VvllHG~~---~~~~~~~~~~~~~L~~~-Gy~V~~~D~r 96 (330)
T PLN02298 57 PPRALIFMVHGYG---NDISWTFQSTAIFLAQM-GFACFALDLE 96 (330)
T ss_pred CCceEEEEEcCCC---CCcceehhHHHHHHHhC-CCEEEEecCC
Confidence 3568999999986 11221 21 2345554 5999999999
No 28
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=89.58 E-value=0.62 Score=31.95 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=35.5
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCC---CCCcH------HHhcCCCeEEEEeCCCCCCccCccCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGN---PYDGS------ILASYGHLIVVTVNFRLGVLGKLIIV 76 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~---~~~~~------~la~~~~~ivv~v~YRl~p~Gfl~~~ 76 (90)
.|..+||.| .. ...++.|+|+..|+=+-...... ..... .++.++ +++|..+-| |+-.++
T Consensus 4 ~L~adv~~P-~~---~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~G-Y~vV~~D~R----G~g~S~ 72 (272)
T PF02129_consen 4 RLAADVYRP-GA---DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERG-YAVVVQDVR----GTGGSE 72 (272)
T ss_dssp EEEEEEEEE------TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT--EEEEEE-T----TSTTS-
T ss_pred EEEEEEEec-CC---CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCC-CEEEEECCc----ccccCC
Confidence 588899999 22 23678999999988762211111 11111 266655 999999999 666554
No 29
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=89.58 E-value=0.69 Score=32.74 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCccCCCCCC-C--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY-D--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~-~--~~~la~~~~~ivv~v~YR 66 (90)
+..|+||++||.+-. ...+ . ...++.. ++.|+.+|||
T Consensus 85 ~~~~~iv~lHG~~~~---~~~~~~~~~~~l~~~-g~~v~~~D~~ 124 (349)
T PLN02385 85 RPKAAVCFCHGYGDT---CTFFFEGIARKIASS-GYGVFAMDYP 124 (349)
T ss_pred CCCeEEEEECCCCCc---cchHHHHHHHHHHhC-CCEEEEecCC
Confidence 456999999996532 2222 2 2355543 5999999999
No 30
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=89.44 E-value=0.5 Score=34.93 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=30.9
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcCC---CeEEEEeCC
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYG---HLIVVTVNF 65 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~---~~ivv~v~Y 65 (90)
..+.||.|.... .+++||++++||+.|............+.+.+ .+++|.++-
T Consensus 194 r~v~VY~P~~y~----~~~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~ 249 (411)
T PRK10439 194 RRVWIYTTGDAA----PEERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDA 249 (411)
T ss_pred eEEEEEECCCCC----CCCCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECC
Confidence 446677765442 35789999999999853221110122343333 467788864
No 31
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=89.35 E-value=0.29 Score=32.70 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=23.5
Q ss_pred eeEEEEEEcccCCCCCCCCCCceEEEEEcC-CCCc
Q psy3086 7 SVIFIFFFAFSQNSMDDIGSPMPALILIHG-ESYE 40 (90)
Q Consensus 7 ~~l~l~i~~p~~~~~~~~~~~~Pviv~iHG-Gg~~ 40 (90)
....+.||+|... ...++.|||+++|| ++|.
T Consensus 6 ~~~~~~VylP~~y---~~~~~~PvlylldG~~~~~ 37 (251)
T PF00756_consen 6 RDRRVWVYLPPGY---DPSKPYPVLYLLDGQSGWF 37 (251)
T ss_dssp EEEEEEEEECTTG---GTTTTEEEEEEESHTTHHH
T ss_pred CeEEEEEEECCCC---CCCCCCEEEEEccCCcccc
Confidence 3456788888876 23788999999999 5554
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=87.90 E-value=1.4 Score=29.70 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=31.0
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|+..+|.|. ..+.|+++++||.+- +...+. ...++.. ++.++.+|+|
T Consensus 12 ~l~~~~~~~~-------~~~~~~v~llHG~~~---~~~~~~~~~~~l~~~-g~~via~D~~ 61 (276)
T PHA02857 12 YIYCKYWKPI-------TYPKALVFISHGAGE---HSGRYEELAENISSL-GILVFSHDHI 61 (276)
T ss_pred EEEEEeccCC-------CCCCEEEEEeCCCcc---ccchHHHHHHHHHhC-CCEEEEccCC
Confidence 4666667553 134588988999753 223332 3456554 5999999999
No 33
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=86.59 E-value=0.63 Score=27.99 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=24.5
Q ss_pred EEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCC
Q psy3086 30 ALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLG 68 (90)
Q Consensus 30 viv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~ 68 (90)
+||++||.+.. ...+. ...+++. ++.++.++||..
T Consensus 1 ~vv~~HG~~~~---~~~~~~~~~~l~~~-G~~v~~~~~~~~ 37 (145)
T PF12695_consen 1 VVVLLHGWGGS---RRDYQPLAEALAEQ-GYAVVAFDYPGH 37 (145)
T ss_dssp EEEEECTTTTT---THHHHHHHHHHHHT-TEEEEEESCTTS
T ss_pred CEEEECCCCCC---HHHHHHHHHHHHHC-CCEEEEEecCCC
Confidence 58999999862 22232 3466666 699999999844
No 34
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=86.52 E-value=0.79 Score=32.78 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=26.4
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YR 66 (90)
.++-.+.+|... +.++|+||.+||-|-..+. ..+...++..+ +++++++-|
T Consensus 68 ~V~g~l~~P~~~-----~~~~Pavv~~hGyg~~~~~--~~~~~~~a~~G-~~vl~~d~r 118 (320)
T PF05448_consen 68 RVYGWLYRPKNA-----KGKLPAVVQFHGYGGRSGD--PFDLLPWAAAG-YAVLAMDVR 118 (320)
T ss_dssp EEEEEEEEES-S-----SSSEEEEEEE--TT--GGG--HHHHHHHHHTT--EEEEE--T
T ss_pred EEEEEEEecCCC-----CCCcCEEEEecCCCCCCCC--cccccccccCC-eEEEEecCC
Confidence 344445555422 4689999999998854221 12234566654 999999888
No 35
>KOG2564|consensus
Probab=86.30 E-value=1.2 Score=32.12 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=36.5
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YR 66 (90)
.+..++|.--+. ...-|++++.||||...-+.. ..++.+..+..+.++++|-|
T Consensus 59 ~~t~n~Y~t~~~-----~t~gpil~l~HG~G~S~LSfA-~~a~el~s~~~~r~~a~DlR 111 (343)
T KOG2564|consen 59 DLTFNVYLTLPS-----ATEGPILLLLHGGGSSALSFA-IFASELKSKIRCRCLALDLR 111 (343)
T ss_pred cceEEEEEecCC-----CCCccEEEEeecCcccchhHH-HHHHHHHhhcceeEEEeecc
Confidence 456677764433 345799999999997544311 23567777777888999988
No 36
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=86.01 E-value=0.89 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=32.4
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|+.+.|.|... .+.+++.+||-+--.+ .|. ...++.. ++.|+..|+|
T Consensus 3 ~L~~~~w~p~~~-------~k~~v~i~HG~~eh~~---ry~~~a~~L~~~-G~~V~~~D~r 52 (79)
T PF12146_consen 3 KLFYRRWKPENP-------PKAVVVIVHGFGEHSG---RYAHLAEFLAEQ-GYAVFAYDHR 52 (79)
T ss_pred EEEEEEecCCCC-------CCEEEEEeCCcHHHHH---HHHHHHHHHHhC-CCEEEEECCC
Confidence 466667665533 4789999999863222 232 3566664 5999999999
No 37
>KOG3101|consensus
Probab=81.45 E-value=3.8 Score=28.55 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=35.0
Q ss_pred eeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC---CcHHHhcCCCeEEEEeCCC
Q psy3086 6 TSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY---DGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 6 ~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~---~~~~la~~~~~ivv~v~YR 66 (90)
.......||.|...+. +++.|+++|+-|= .....+.. ..+..|++.+.+||.++-.
T Consensus 25 ~c~Mtf~vylPp~a~~---~k~~P~lf~LSGL--TCT~~Nfi~Ksg~qq~As~hgl~vV~PDTS 83 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPR---GKRCPVLFYLSGL--TCTHENFIEKSGFQQQASKHGLAVVAPDTS 83 (283)
T ss_pred ccceEEEEecCCCccc---CCcCceEEEecCC--cccchhhHhhhhHHHhHhhcCeEEECCCCC
Confidence 3456788998854443 6789999998542 11111111 1256778888999988653
No 38
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=81.05 E-value=2.5 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCccCC-CCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNS-GNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~-~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
+++|++|++||-|-.... ...+. ...++. .++.++.+|||
T Consensus 23 ~~~~~VlllHG~g~~~~~~~~~~~~la~~La~-~Gy~Vl~~Dl~ 65 (266)
T TIGR03101 23 GPRGVVIYLPPFAEEMNKSRRMVALQARAFAA-GGFGVLQIDLY 65 (266)
T ss_pred CCceEEEEECCCcccccchhHHHHHHHHHHHH-CCCEEEEECCC
Confidence 347999999995432111 11111 245554 45999999999
No 39
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=80.05 E-value=4.9 Score=27.54 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
+++++.||.++..|+...+. .+.++.. ++.++.+|+|
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~-G~~v~~~Dl~ 66 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEA-GFPVLRFDYR 66 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHC-CCEEEEeCCC
Confidence 44444444456666544321 3455554 5999999999
No 40
>KOG2100|consensus
Probab=79.60 E-value=7.3 Score=31.21 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCCceEEEEEcCCCCccCCCC-CC--C-cHHHhcCCCeEEEEeCCCCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGN-PY--D-GSILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~-~~--~-~~~la~~~~~ivv~v~YRl~p 69 (90)
.++.|++|+.|||=- ..... .+ + ...++...+++|+.+|||=..
T Consensus 523 ~~kyPllv~~yGGP~-sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~ 570 (755)
T KOG2100|consen 523 SKKYPLLVVVYGGPG-SQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSG 570 (755)
T ss_pred CCCCCEEEEecCCCC-cceeeeeEEecHHHHhhccCCeEEEEEcCCCcC
Confidence 458999999999975 11111 11 1 234567778999999999444
No 41
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=79.33 E-value=2.8 Score=30.72 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.+.+|+||++||.+- +...+. ...++.. ++.++.+++|
T Consensus 133 ~~~~~~Vl~lHG~~~---~~~~~~~~a~~L~~~-Gy~V~~~D~r 172 (395)
T PLN02652 133 GEMRGILIIIHGLNE---HSGRYLHFAKQLTSC-GFGVYAMDWI 172 (395)
T ss_pred CCCceEEEEECCchH---HHHHHHHHHHHHHHC-CCEEEEeCCC
Confidence 345789999999652 222232 3455544 5999999999
No 42
>PLN02872 triacylglycerol lipase
Probab=78.93 E-value=4.5 Score=29.77 Aligned_cols=42 Identities=26% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCccCCCCCC----C-cHHHhcCCCeEEEEeCCCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY----D-GSILASYGHLIVVTVNFRLG 68 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~----~-~~~la~~~~~ivv~v~YRl~ 68 (90)
.+.|+++++||.+......... . ...+++. ++-|+..|.|=.
T Consensus 72 ~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~-GydV~l~n~RG~ 118 (395)
T PLN02872 72 QRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADH-GFDVWVGNVRGT 118 (395)
T ss_pred CCCCeEEEeCcccccccceeecCcccchHHHHHhC-CCCccccccccc
Confidence 3468899999976543322111 1 1245554 488999999843
No 43
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=78.84 E-value=2.5 Score=27.29 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCccCCCCCCC-c-HHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD-G-SILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~-~-~~la~~~~~ivv~v~YR 66 (90)
...|++|++||.+- +...+. . ..+. + ++.++.+|+|
T Consensus 11 ~~~~~iv~lhG~~~---~~~~~~~~~~~l~-~-~~~vi~~D~~ 48 (257)
T TIGR03611 11 ADAPVVVLSSGLGG---SGSYWAPQLDVLT-Q-RFHVVTYDHR 48 (257)
T ss_pred CCCCEEEEEcCCCc---chhHHHHHHHHHH-h-ccEEEEEcCC
Confidence 34689999999763 223332 2 2333 2 4889999999
No 44
>PRK10985 putative hydrolase; Provisional
Probab=78.67 E-value=3.5 Score=28.97 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCccCCCCCC---CcHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY---DGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~---~~~~la~~~~~ivv~v~YR 66 (90)
...|++|++||.+= ++...+ -...+++ .++.++..|||
T Consensus 56 ~~~p~vll~HG~~g--~~~~~~~~~~~~~l~~-~G~~v~~~d~r 96 (324)
T PRK10985 56 RHKPRLVLFHGLEG--SFNSPYAHGLLEAAQK-RGWLGVVMHFR 96 (324)
T ss_pred CCCCEEEEeCCCCC--CCcCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 45699999997641 111112 1234444 46999999999
No 45
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=77.55 E-value=6.1 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||.+- +...+. ...+.. ++.++.+++|
T Consensus 4 ~~~iv~~HG~~~---~~~~~~~~~~~l~~--~~~vi~~d~~ 39 (245)
T TIGR01738 4 NVHLVLIHGWGM---NAEVFRCLDEELSA--HFTLHLVDLP 39 (245)
T ss_pred CceEEEEcCCCC---chhhHHHHHHhhcc--CeEEEEecCC
Confidence 467899998532 223332 233432 4889999998
No 46
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=74.90 E-value=4.1 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
+..|.+|++||.+.. ...+. ...+... ++-++.+++|
T Consensus 16 ~~~p~vvliHG~~~~---~~~w~~~~~~L~~~-g~~vi~~dl~ 54 (273)
T PLN02211 16 RQPPHFVLIHGISGG---SWCWYKIRCLMENS-GYKVTCIDLK 54 (273)
T ss_pred CCCCeEEEECCCCCC---cCcHHHHHHHHHhC-CCEEEEeccc
Confidence 446889999997642 23333 2344443 5888999888
No 47
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=73.55 E-value=2.8 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCccCCCCCC-C-cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPY-D-GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~-~-~~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||+... ...+ . ...+....++.++.+++|
T Consensus 25 ~~~vl~~hG~~g~---~~~~~~~~~~~l~~~g~~vi~~d~~ 62 (288)
T TIGR01250 25 KIKLLLLHGGPGM---SHEYLENLRELLKEEGREVIMYDQL 62 (288)
T ss_pred CCeEEEEcCCCCc---cHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4778999997532 2222 1 233334435899999999
No 48
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=71.62 E-value=8.1 Score=21.14 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=14.2
Q ss_pred eeEEEEEEc-ccCCCCCCCCCCceEEEEEcCC
Q psy3086 7 SVIFIFFFA-FSQNSMDDIGSPMPALILIHGE 37 (90)
Q Consensus 7 ~~l~l~i~~-p~~~~~~~~~~~~Pviv~iHGG 37 (90)
|--.|.++. |.+........++|+++..||=
T Consensus 21 DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 21 DGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp TSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred CCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 334455554 2333233456778889999984
No 49
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=71.56 E-value=6.6 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCcceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCC----CCcHHHhcCCCeEEEEeCCC
Q psy3086 2 NKTQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP----YDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 2 ~~~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~----~~~~~la~~~~~ivv~v~YR 66 (90)
|...++.|--+|..... ++....++.|.|-| ++++. +....+|.+.++++|+|+|-
T Consensus 15 gikR~sKLEyri~ydd~------Ke~kaIvfiI~GfG---~dan~~~~d~~r~~iA~~fnvv~I~V~YH 74 (403)
T PF11144_consen 15 GIKRESKLEYRISYDDE------KEIKAIVFIIPGFG---ADANSNYLDFMREYIAKKFNVVVISVNYH 74 (403)
T ss_pred cccccceeeEEeecCCC------CCceEEEEEeCCcC---CCcchHHHHHHHHHHHHhCCEEEEEeeee
Confidence 34455555555532211 23344555554443 33332 23568899999999999997
No 50
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=70.80 E-value=6.4 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCccCCCC-CCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGN-PYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~-~~~--~~~la~~~~~ivv~v~YR 66 (90)
++.|+||..||.+ +... .+. ...++.+ ++.|+++|+|
T Consensus 192 ~~~P~Vli~gG~~---~~~~~~~~~~~~~La~~-Gy~vl~~D~p 231 (414)
T PRK05077 192 GPFPTVLVCGGLD---SLQTDYYRLFRDYLAPR-GIAMLTIDMP 231 (414)
T ss_pred CCccEEEEeCCcc---cchhhhHHHHHHHHHhC-CCEEEEECCC
Confidence 5678877654432 1111 222 2355554 5999999999
No 51
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=70.67 E-value=5.2 Score=27.77 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCCccCCCCCC-C--cHHHhcCCCeEEEEeCCCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNPY-D--GSILASYGHLIVVTVNFRLG 68 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~~-~--~~~la~~~~~ivv~v~YRl~ 68 (90)
....|++|++|| |.......+ . ...+..+.++.|+.+||+-.
T Consensus 33 ~~~~p~vilIHG--~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~ 77 (275)
T cd00707 33 NPSRPTRFIIHG--WTSSGEESWISDLRKAYLSRGDYNVIVVDWGRG 77 (275)
T ss_pred CCCCCcEEEEcC--CCCCCCCcHHHHHHHHHHhcCCCEEEEEECccc
Confidence 455789999999 332211221 1 12344456689999999843
No 52
>KOG2281|consensus
Probab=70.53 E-value=18 Score=29.11 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=40.5
Q ss_pred ceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC------CcHHHhcCCCeEEEEeCCCC
Q psy3086 5 QTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY------DGSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 5 ~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~------~~~~la~~~~~ivv~v~YRl 67 (90)
....++--||.|..-.+ .++.|+++++.||==+.--.+.+ ....+++.+ ++||.+|=|=
T Consensus 622 tg~~lYgmiyKPhn~~p---gkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslG-y~Vv~IDnRG 686 (867)
T KOG2281|consen 622 TGLTLYGMIYKPHNFQP---GKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLG-YVVVFIDNRG 686 (867)
T ss_pred CCcEEEEEEEccccCCC---CCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcc-eEEEEEcCCC
Confidence 34467777777765544 67899999999996544333332 234667765 9999999983
No 53
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=69.90 E-value=4.7 Score=28.81 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
....||++|+||=... ...|. -+++++- ++|+|+++--
T Consensus 43 ~G~yPVilF~HG~~l~---ns~Ys~lL~HIASH-GfIVVAPQl~ 82 (307)
T PF07224_consen 43 AGTYPVILFLHGFNLY---NSFYSQLLAHIASH-GFIVVAPQLY 82 (307)
T ss_pred CCCccEEEEeechhhh---hHHHHHHHHHHhhc-CeEEEechhh
Confidence 3558999999984432 22243 3567764 5999998643
No 54
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.24 E-value=9 Score=27.66 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCccCCCCC--C--CcHHHhcCCCeEEEEe-CCC
Q psy3086 27 PMPALILIHGESYEWNSGNP--Y--DGSILASYGHLIVVTV-NFR 66 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~--~--~~~~la~~~~~ivv~v-~YR 66 (90)
..|++|.+||++ ++... + .-..++++.+..|+.+ .|.
T Consensus 60 ~apLvv~LHG~~---~sgag~~~~sg~d~lAd~~gFlV~yPdg~~ 101 (312)
T COG3509 60 GAPLVVVLHGSG---GSGAGQLHGTGWDALADREGFLVAYPDGYD 101 (312)
T ss_pred CCCEEEEEecCC---CChHHhhcccchhhhhcccCcEEECcCccc
Confidence 349999999987 33332 2 2468999999999887 444
No 55
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=69.18 E-value=8.2 Score=24.50 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCccCCCCCCC-c-HHHhcCCCeEEEEeCCC
Q psy3086 27 PMPALILIHGESYEWNSGNPYD-G-SILASYGHLIVVTVNFR 66 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~~~-~-~~la~~~~~ivv~v~YR 66 (90)
..|++|++||-|-. ...+. . ..+. .++.++.+++|
T Consensus 12 ~~~~li~~hg~~~~---~~~~~~~~~~l~--~~~~v~~~d~~ 48 (251)
T TIGR02427 12 GAPVLVFINSLGTD---LRMWDPVLPALT--PDFRVLRYDKR 48 (251)
T ss_pred CCCeEEEEcCcccc---hhhHHHHHHHhh--cccEEEEecCC
Confidence 46899999986532 22232 1 2332 35899999998
No 56
>PRK10673 acyl-CoA esterase; Provisional
Probab=68.47 E-value=14 Score=24.20 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
...|.||++||.+- +...+. ...++. ++-++.+|.|
T Consensus 14 ~~~~~iv~lhG~~~---~~~~~~~~~~~l~~--~~~vi~~D~~ 51 (255)
T PRK10673 14 HNNSPIVLVHGLFG---SLDNLGVLARDLVN--DHDIIQVDMR 51 (255)
T ss_pred CCCCCEEEECCCCC---chhHHHHHHHHHhh--CCeEEEECCC
Confidence 34588999999642 222232 234443 4788999998
No 57
>PRK00870 haloalkane dehalogenase; Provisional
Probab=68.02 E-value=5.4 Score=27.35 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|.||++||.+ ++...+. ...++.. ++-|++++.|
T Consensus 46 ~~~lvliHG~~---~~~~~w~~~~~~L~~~-gy~vi~~Dl~ 82 (302)
T PRK00870 46 GPPVLLLHGEP---SWSYLYRKMIPILAAA-GHRVIAPDLI 82 (302)
T ss_pred CCEEEEECCCC---CchhhHHHHHHHHHhC-CCEEEEECCC
Confidence 47899999964 2222232 2345433 5899999999
No 58
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=67.55 E-value=9.5 Score=26.91 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=28.9
Q ss_pred EEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCCC
Q psy3086 10 FIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 10 ~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YRl 67 (90)
.+.|..|....+ ..+.||+. +|-|.=+++.........+++.-..+.|.+.|+-
T Consensus 24 ri~i~~P~~~~~---~~~YpVlY-~lDGn~vf~~~~~~~~~~~~~~~~~~iv~iGye~ 77 (264)
T COG2819 24 RIFIATPKNYPK---PGGYPVLY-MLDGNAVFNALTEIMLRILADLPPPVIVGIGYET 77 (264)
T ss_pred EEEecCCCCCCC---CCCCcEEE-EecchhhhchHHHHhhhhhhcCCCceEEEecccc
Confidence 345555555443 34488764 5555544554443333444444445678888874
No 59
>PLN02511 hydrolase
Probab=67.08 E-value=11 Score=27.40 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCccCCCCCCC---cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD---GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~---~~~la~~~~~ivv~v~YR 66 (90)
...|+||++||.+- ++...|. ...+. +.++.++.+|+|
T Consensus 98 ~~~p~vvllHG~~g--~s~~~y~~~~~~~~~-~~g~~vv~~d~r 138 (388)
T PLN02511 98 ADAPVLILLPGLTG--GSDDSYVRHMLLRAR-SKGWRVVVFNSR 138 (388)
T ss_pred CCCCEEEEECCCCC--CCCCHHHHHHHHHHH-HCCCEEEEEecC
Confidence 34689999998642 2222221 12233 346999999999
No 60
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=65.19 E-value=5.3 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=9.6
Q ss_pred CCCceEEEEEcCCCC
Q psy3086 25 GSPMPALILIHGESY 39 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~ 39 (90)
++..|++|++||-|-
T Consensus 11 ~~~~~lvi~LHG~G~ 25 (216)
T PF02230_consen 11 GKAKPLVILLHGYGD 25 (216)
T ss_dssp ST-SEEEEEE--TTS
T ss_pred CCCceEEEEECCCCC
Confidence 466899999999763
No 61
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=64.77 E-value=9.6 Score=27.36 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=33.1
Q ss_pred eeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCCCcHHHhcC---CCeEEEEeCCC
Q psy3086 7 SVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASY---GHLIVVTVNFR 66 (90)
Q Consensus 7 ~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~---~~~ivv~v~YR 66 (90)
+...+-++.|....+ ..++||++.+||--|.--..-.-....+... .++++|-++|-
T Consensus 80 ~~~~~vv~lppgy~~---~~k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai~vgid~~ 139 (299)
T COG2382 80 SERRRVVYLPPGYNP---LEKYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAILVGIDYI 139 (299)
T ss_pred cceeEEEEeCCCCCc---cccccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCceEEecCCC
Confidence 344556666665544 7889999999988774332111011222222 25778877774
No 62
>PRK03204 haloalkane dehalogenase; Provisional
Probab=63.40 E-value=9.7 Score=26.14 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||.+- +...+. ...+.+ ++-++.+++|
T Consensus 34 ~~~iv~lHG~~~---~~~~~~~~~~~l~~--~~~vi~~D~~ 69 (286)
T PRK03204 34 GPPILLCHGNPT---WSFLYRDIIVALRD--RFRCVAPDYL 69 (286)
T ss_pred CCEEEEECCCCc---cHHHHHHHHHHHhC--CcEEEEECCC
Confidence 378999999651 111122 123332 3889999999
No 63
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=62.51 E-value=9 Score=24.20 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
|++|++||.+. +...+. ...++ .++.++.+++|
T Consensus 2 ~~vv~~hG~~~---~~~~~~~~~~~L~--~~~~v~~~d~~ 36 (251)
T TIGR03695 2 PVLVFLHGFLG---SGADWQALIELLG--PHFRCLAIDLP 36 (251)
T ss_pred CEEEEEcCCCC---chhhHHHHHHHhc--ccCeEEEEcCC
Confidence 78999999642 333332 24454 35888999988
No 64
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=62.33 E-value=8.4 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 27 PMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
..|+||++||.+... ..+. ...++. ++.|+.+++|
T Consensus 104 ~~p~vvllHG~~~~~---~~~~~~~~~L~~--~~~vi~~D~r 140 (402)
T PLN02894 104 DAPTLVMVHGYGASQ---GFFFRNFDALAS--RFRVIAIDQL 140 (402)
T ss_pred CCCEEEEECCCCcch---hHHHHHHHHHHh--CCEEEEECCC
Confidence 458999999987532 2221 234544 3889999999
No 65
>PRK10349 carboxylesterase BioH; Provisional
Probab=61.39 E-value=10 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCccCCCCCCCc--HHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDG--SILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~--~~la~~~~~ivv~v~YR 66 (90)
.|.||++||.+. +...+.. ..+.. .+-++.+|+|
T Consensus 13 ~~~ivllHG~~~---~~~~w~~~~~~L~~--~~~vi~~Dl~ 48 (256)
T PRK10349 13 NVHLVLLHGWGL---NAEVWRCIDEELSS--HFTLHLVDLP 48 (256)
T ss_pred CCeEEEECCCCC---ChhHHHHHHHHHhc--CCEEEEecCC
Confidence 356999999542 2222332 34433 3788999988
No 66
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=60.43 E-value=7.4 Score=25.99 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCccCCCCCC-C-cHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPY-D-GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~-~-~~~la~~~~~ivv~v~YR 66 (90)
|.||++||.+.-......+ . ...++.. ++-|+.+|+|
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~-~~~vi~~D~~ 69 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDA-GYRVILKDSP 69 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhC-CCEEEEECCC
Confidence 6799999965322211111 1 2234433 5899999998
No 67
>KOG1455|consensus
Probab=60.07 E-value=17 Score=26.32 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
+++..|+++||.|--.. ..+. +..++.. ++.|..++|+
T Consensus 52 ~pr~lv~~~HG~g~~~s--~~~~~~a~~l~~~-g~~v~a~D~~ 91 (313)
T KOG1455|consen 52 EPRGLVFLCHGYGEHSS--WRYQSTAKRLAKS-GFAVYAIDYE 91 (313)
T ss_pred CCceEEEEEcCCcccch--hhHHHHHHHHHhC-CCeEEEeecc
Confidence 66788999999774221 1232 4566665 5999999999
No 68
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=58.26 E-value=17 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YR 66 (90)
+.+|++||+.-.. ............++-|+.+|+|
T Consensus 28 ~~lvllHG~~~~~---~~~~~~~~~~~~~~~vi~~D~~ 62 (306)
T TIGR01249 28 KPVVFLHGGPGSG---TDPGCRRFFDPETYRIVLFDQR 62 (306)
T ss_pred CEEEEECCCCCCC---CCHHHHhccCccCCEEEEECCC
Confidence 4579999964321 1111111122235889999999
No 69
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=58.25 E-value=10 Score=24.97 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|++|++||.+. +...+. ...++. ++-++.+|+|
T Consensus 28 ~~~vv~~hG~~~---~~~~~~~~~~~l~~--~~~vi~~D~~ 63 (278)
T TIGR03056 28 GPLLLLLHGTGA---STHSWRDLMPPLAR--SFRVVAPDLP 63 (278)
T ss_pred CCeEEEEcCCCC---CHHHHHHHHHHHhh--CcEEEeecCC
Confidence 488999999652 222232 234443 3788899999
No 70
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.30 E-value=29 Score=25.10 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCCceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YR 66 (90)
+.++|.+|.+||=+-..| ..++.-.++..+ +.++..+-|
T Consensus 80 ~~~~P~vV~fhGY~g~~g--~~~~~l~wa~~G-yavf~MdvR 118 (321)
T COG3458 80 KGKLPAVVQFHGYGGRGG--EWHDMLHWAVAG-YAVFVMDVR 118 (321)
T ss_pred CCccceEEEEeeccCCCC--Cccccccccccc-eeEEEEecc
Confidence 478999999998443322 345555666654 888888888
No 71
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=56.79 E-value=12 Score=24.34 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCccCCCCCCC-c-HHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD-G-SILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~-~-~~la~~~~~ivv~v~YR 66 (90)
.|+||++||.+... ..+. . ..+ .++-++++++|
T Consensus 2 ~p~vvllHG~~~~~---~~w~~~~~~l---~~~~vi~~D~~ 36 (242)
T PRK11126 2 LPWLVFLHGLLGSG---QDWQPVGEAL---PDYPRLYIDLP 36 (242)
T ss_pred CCEEEEECCCCCCh---HHHHHHHHHc---CCCCEEEecCC
Confidence 37899999986532 2232 1 233 25889999999
No 72
>PRK11460 putative hydrolase; Provisional
Probab=56.29 E-value=11 Score=25.27 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.9
Q ss_pred CCceEEEEEcCCC
Q psy3086 26 SPMPALILIHGES 38 (90)
Q Consensus 26 ~~~Pviv~iHGGg 38 (90)
+..|++|++||-|
T Consensus 14 ~~~~~vIlLHG~G 26 (232)
T PRK11460 14 PAQQLLLLFHGVG 26 (232)
T ss_pred CCCcEEEEEeCCC
Confidence 4568999999977
No 73
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=55.62 E-value=11 Score=23.30 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 31 LILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 31 iv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
||++||.+-.. ..+. ...++ .++-++.+++|
T Consensus 1 vv~~hG~~~~~---~~~~~~~~~l~--~~~~v~~~d~~ 33 (228)
T PF12697_consen 1 VVFLHGFGGSS---ESWDPLAEALA--RGYRVIAFDLP 33 (228)
T ss_dssp EEEE-STTTTG---GGGHHHHHHHH--TTSEEEEEECT
T ss_pred eEEECCCCCCH---HHHHHHHHHHh--CCCEEEEEecC
Confidence 68999988433 3333 24553 36999999999
No 74
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=54.43 E-value=14 Score=26.38 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCccCCCCCCCc--HHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDG--SILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~--~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||-+- +...+.. ..++. ++-++.+|+|
T Consensus 88 gp~lvllHG~~~---~~~~w~~~~~~L~~--~~~via~Dl~ 123 (360)
T PLN02679 88 GPPVLLVHGFGA---SIPHWRRNIGVLAK--NYTVYAIDLL 123 (360)
T ss_pred CCeEEEECCCCC---CHHHHHHHHHHHhc--CCEEEEECCC
Confidence 377999999763 2222322 33433 4899999999
No 75
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=52.52 E-value=14 Score=25.86 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=26.4
Q ss_pred EEEEEcCCCCccCCCCC-CC--cHHHhcCCCeEEEEeCCCC
Q psy3086 30 ALILIHGESYEWNSGNP-YD--GSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 30 viv~iHGGg~~~g~~~~-~~--~~~la~~~~~ivv~v~YRl 67 (90)
.+|+|-||.|..-.+.. |. ...++++ +++|++.-|..
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~-Gy~ViAtPy~~ 57 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADR-GYAVIATPYVV 57 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhC-CcEEEEEecCC
Confidence 57788899987554442 43 4677776 59999999964
No 76
>PRK07581 hypothetical protein; Validated
Probab=52.48 E-value=28 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCccCCCCC-CC-cHHHhcCCCeEEEEeCCC
Q psy3086 27 PMPALILIHGESYEWNSGNP-YD-GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~-~~-~~~la~~~~~ivv~v~YR 66 (90)
+.|++++.||+++....... .. ...+.. .++-|+++|+|
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~ 80 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDP-EKYFIIIPNMF 80 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCc-CceEEEEecCC
Confidence 34777777877764332111 01 123432 35889999999
No 77
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=51.53 E-value=57 Score=24.09 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=31.4
Q ss_pred EEEEEEcccCCCCCCCCCCceEEEEEcCCC---CccCCCCCC--CcHHHhcCCCeEEEEe
Q psy3086 9 IFIFFFAFSQNSMDDIGSPMPALILIHGES---YEWNSGNPY--DGSILASYGHLIVVTV 63 (90)
Q Consensus 9 l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg---~~~g~~~~~--~~~~la~~~~~ivv~v 63 (90)
-+|.|++|... ......+++|.||. +.....+.. ....+|...+.+++.+
T Consensus 50 H~l~I~vP~~~-----~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l 104 (367)
T PF10142_consen 50 HWLTIYVPKND-----KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAIL 104 (367)
T ss_pred EEEEEEECCCC-----CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEe
Confidence 46889998872 24567899999999 222211111 1356777777777666
No 78
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=51.32 E-value=14 Score=24.13 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCccCCCCCC--CcHHHhcCCCeEEEEeCCCCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY--DGSILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~--~~~~la~~~~~ivv~v~YRl~p 69 (90)
.+.|+||.+|+-. |-.... ...++++++ +.|+.+|+--+.
T Consensus 12 ~~~~~Vvv~~d~~---G~~~~~~~~ad~lA~~G-y~v~~pD~f~~~ 53 (218)
T PF01738_consen 12 GPRPAVVVIHDIF---GLNPNIRDLADRLAEEG-YVVLAPDLFGGR 53 (218)
T ss_dssp SSEEEEEEE-BTT---BS-HHHHHHHHHHHHTT--EEEEE-CCCCT
T ss_pred CCCCEEEEEcCCC---CCchHHHHHHHHHHhcC-CCEEecccccCC
Confidence 4689999999633 322211 246777765 999999875443
No 79
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=51.15 E-value=57 Score=23.04 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=12.0
Q ss_pred HHHhcCCCeEEEEeCCCC
Q psy3086 50 SILASYGHLIVVTVNFRL 67 (90)
Q Consensus 50 ~~la~~~~~ivv~v~YRl 67 (90)
..++.. ++.|+.++||-
T Consensus 88 ~~L~~~-G~~V~~~D~~g 104 (350)
T TIGR01836 88 RGLLER-GQDVYLIDWGY 104 (350)
T ss_pred HHHHHC-CCeEEEEeCCC
Confidence 455554 48899999973
No 80
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=50.53 E-value=22 Score=24.14 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCCCccCccCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLGVLGKLIIV 76 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~p~Gfl~~~ 76 (90)
|++|++||.+.. ...+. ...++.. .-++.+|.| ||=.++
T Consensus 30 ~~vlllHG~~~~---~~~w~~~~~~L~~~--~~vi~~Dlp----G~G~S~ 70 (294)
T PLN02824 30 PALVLVHGFGGN---ADHWRKNTPVLAKS--HRVYAIDLL----GYGYSD 70 (294)
T ss_pred CeEEEECCCCCC---hhHHHHHHHHHHhC--CeEEEEcCC----CCCCCC
Confidence 789999996542 22232 2455543 578889988 554443
No 81
>PLN02965 Probable pheophorbidase
Probab=50.18 E-value=23 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=21.5
Q ss_pred EEEEEcCCCCccCCCCCCC-c-HHHhcCCCeEEEEeCCC
Q psy3086 30 ALILIHGESYEWNSGNPYD-G-SILASYGHLIVVTVNFR 66 (90)
Q Consensus 30 viv~iHGGg~~~g~~~~~~-~-~~la~~~~~ivv~v~YR 66 (90)
.+|++||.+- +...+. . ..+.. .++-|+.+|+|
T Consensus 5 ~vvllHG~~~---~~~~w~~~~~~L~~-~~~~via~Dl~ 39 (255)
T PLN02965 5 HFVFVHGASH---GAWCWYKLATLLDA-AGFKSTCVDLT 39 (255)
T ss_pred EEEEECCCCC---CcCcHHHHHHHHhh-CCceEEEecCC
Confidence 4899999872 233333 2 34443 34899999998
No 82
>PRK06489 hypothetical protein; Provisional
Probab=49.55 E-value=37 Score=24.12 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCccCCCCCCCc-HHHh------cCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDG-SILA------SYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~-~~la------~~~~~ivv~v~YR 66 (90)
.|.+|++||.+-.......... ..+. ...++-|+.+|+|
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~ 114 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGI 114 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCC
Confidence 5789999998742211100011 1111 1235889999999
No 83
>PRK10749 lysophospholipase L2; Provisional
Probab=49.48 E-value=16 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 27 PMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
..|+|+++||-+ ++...|. ...++. .++.|+.+|+|
T Consensus 53 ~~~~vll~HG~~---~~~~~y~~~~~~l~~-~g~~v~~~D~~ 90 (330)
T PRK10749 53 HDRVVVICPGRI---ESYVKYAELAYDLFH-LGYDVLIIDHR 90 (330)
T ss_pred CCcEEEEECCcc---chHHHHHHHHHHHHH-CCCeEEEEcCC
Confidence 347899999953 2222232 234544 45999999999
No 84
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=49.24 E-value=23 Score=26.62 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.1
Q ss_pred CCCceEEEEEcCC
Q psy3086 25 GSPMPALILIHGE 37 (90)
Q Consensus 25 ~~~~Pviv~iHGG 37 (90)
.+..|+++|++||
T Consensus 74 ~~~~Pl~lwlnGG 86 (462)
T PTZ00472 74 NPEAPVLLWMTGG 86 (462)
T ss_pred CCCCCEEEEECCC
Confidence 4567999999999
No 85
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=48.14 E-value=27 Score=26.54 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCccCCCCCCCc---HHHhc--CCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDG---SILAS--YGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~---~~la~--~~~~ivv~v~YR 66 (90)
.|.+|++||.+.. ...+.. ..++. +.++-++.+|+|
T Consensus 201 k~~VVLlHG~~~s---~~~W~~~~~~~L~~~~~~~yrVia~Dl~ 241 (481)
T PLN03087 201 KEDVLFIHGFISS---SAFWTETLFPNFSDAAKSTYRLFAVDLL 241 (481)
T ss_pred CCeEEEECCCCcc---HHHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 4789999998632 222321 23332 235889999999
No 86
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=48.05 E-value=22 Score=23.92 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
|.+|++||-+. +...+. ...+.. .+-++.+|+|
T Consensus 26 ~plvllHG~~~---~~~~w~~~~~~L~~--~~~vi~~Dl~ 60 (276)
T TIGR02240 26 TPLLIFNGIGA---NLELVFPFIEALDP--DLEVIAFDVP 60 (276)
T ss_pred CcEEEEeCCCc---chHHHHHHHHHhcc--CceEEEECCC
Confidence 56899998442 222232 233433 4788999999
No 87
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=46.88 E-value=29 Score=25.88 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=25.4
Q ss_pred eeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCcc----CCC----C---CC-C-----cHHHhcCCCeEEEEeCCC
Q psy3086 7 SVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEW----NSG----N---PY-D-----GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 7 ~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~----g~~----~---~~-~-----~~~la~~~~~ivv~v~YR 66 (90)
......+.+|... +.+.|+|+.+||-|--. |.. + .+ + ...++.+ +++|++++-+
T Consensus 99 ~~vpaylLvPd~~-----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~-GYVvla~D~~ 169 (390)
T PF12715_consen 99 SRVPAYLLVPDGA-----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR-GYVVLAPDAL 169 (390)
T ss_dssp B-EEEEEEEETT-------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT-TSEEEEE--T
T ss_pred eeEEEEEEecCCC-----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC-CCEEEEEccc
Confidence 3444455555544 46799999999876432 111 1 01 1 2355555 5999999844
No 88
>PRK05855 short chain dehydrogenase; Validated
Probab=46.39 E-value=20 Score=26.62 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCccCCCCCCC-c-HHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD-G-SILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~-~-~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||.+-. ...+. . ..+ . .++-|+.+|+|
T Consensus 25 ~~~ivllHG~~~~---~~~w~~~~~~L-~-~~~~Vi~~D~~ 60 (582)
T PRK05855 25 RPTVVLVHGYPDN---HEVWDGVAPLL-A-DRFRVVAYDVR 60 (582)
T ss_pred CCeEEEEcCCCch---HHHHHHHHHHh-h-cceEEEEecCC
Confidence 5889999998732 22222 2 334 3 34889999999
No 89
>PRK03592 haloalkane dehalogenase; Provisional
Probab=45.81 E-value=22 Score=24.12 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCCCCCccCccCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFRLGVLGKLIIV 76 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YRl~p~Gfl~~~ 76 (90)
|.+|++||.+ ++...+. ...++.. .-+++++.| ||=.++
T Consensus 28 ~~vvllHG~~---~~~~~w~~~~~~L~~~--~~via~D~~----G~G~S~ 68 (295)
T PRK03592 28 DPIVFLHGNP---TSSYLWRNIIPHLAGL--GRCLAPDLI----GMGASD 68 (295)
T ss_pred CEEEEECCCC---CCHHHHHHHHHHHhhC--CEEEEEcCC----CCCCCC
Confidence 6799999865 2222232 3455554 378999988 554444
No 90
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=43.26 E-value=39 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=18.4
Q ss_pred EEEEcccCCCCCCCCCCceEEEEEcCCCCcc
Q psy3086 11 IFFFAFSQNSMDDIGSPMPALILIHGESYEW 41 (90)
Q Consensus 11 l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~ 41 (90)
...|.++... ...++|+++|+-||==|.
T Consensus 87 ~ffy~fe~~n---dp~~rPvi~wlNGGPGcS 114 (498)
T COG2939 87 FFFYTFESPN---DPANRPVIFWLNGGPGCS 114 (498)
T ss_pred EEEEEecCCC---CCCCCceEEEecCCCChH
Confidence 4455555432 256789999999985443
No 91
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=42.27 E-value=29 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|++|++||.+.. ...+. ...++. ++-|+++++|
T Consensus 127 ~~~ivllHG~~~~---~~~w~~~~~~L~~--~~~Via~Dlp 162 (383)
T PLN03084 127 NPPVLLIHGFPSQ---AYSYRKVLPVLSK--NYHAIAFDWL 162 (383)
T ss_pred CCeEEEECCCCCC---HHHHHHHHHHHhc--CCEEEEECCC
Confidence 4789999987632 22232 234433 4889999998
No 92
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=42.05 E-value=13 Score=21.52 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCccCCCC-CCCcHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGN-PYDGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~-~~~~~~la~~~~~ivv~v~YR 66 (90)
--+++||.|.|+.-... .+...... ..+---|.++||
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p~~~~~v~-~~~~~~V~V~Y~ 63 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDPYGYIDVI-RSTDDTVTVQYR 63 (89)
T ss_pred eEEEEEECCEEcccCCccccCceeEE-eeCCCEEEEEEE
Confidence 56778888888644322 23222222 222335666777
No 93
>KOG4391|consensus
Probab=42.05 E-value=38 Score=23.90 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCCCCCccCccCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRLGVLGKLIIV 76 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~ 76 (90)
++.+|.++++|+-+=.+|..-. ..+-+-...++.|..++|| ||=-++
T Consensus 75 E~S~pTlLyfh~NAGNmGhr~~-i~~~fy~~l~mnv~ivsYR----GYG~S~ 121 (300)
T KOG4391|consen 75 ESSRPTLLYFHANAGNMGHRLP-IARVFYVNLKMNVLIVSYR----GYGKSE 121 (300)
T ss_pred cCCCceEEEEccCCCcccchhh-HHHHHHHHcCceEEEEEee----ccccCC
Confidence 4578999999998766664221 1233334456899999999 664443
No 94
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=41.93 E-value=60 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=33.9
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC--CcHHHhcCCCeEEEEeCCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY--DGSILASYGHLIVVTVNFRL 67 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~--~~~~la~~~~~ivv~v~YRl 67 (90)
.+.+.++.|..........++|++++-||-|=. .+.+ ....+++.+ ++|...++--
T Consensus 51 ~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~---~~~f~~~A~~lAs~G-f~Va~~~hpg 108 (365)
T COG4188 51 ERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY---VTGFAWLAEHLASYG-FVVAAPDHPG 108 (365)
T ss_pred ccccceeccCCCccccccCcCCeEEecCCCCCC---ccchhhhHHHHhhCc-eEEEeccCCC
Confidence 444555555544322233578999999997733 3322 345666655 8888877653
No 95
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=41.92 E-value=26 Score=25.06 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=9.5
Q ss_pred CCCceEEEEEcCC
Q psy3086 25 GSPMPALILIHGE 37 (90)
Q Consensus 25 ~~~~Pviv~iHGG 37 (90)
.+..|+++|+.||
T Consensus 37 ~~~~Pl~~wlnGG 49 (415)
T PF00450_consen 37 PEDDPLILWLNGG 49 (415)
T ss_dssp GCSS-EEEEEE-T
T ss_pred CCCccEEEEecCC
Confidence 4667999999999
No 96
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=38.59 E-value=33 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
...|+++++||=+- +...+. ...++.. ++.++.+|||
T Consensus 447 ~g~P~VVllHG~~g---~~~~~~~lA~~La~~-Gy~VIaiDlp 485 (792)
T TIGR03502 447 DGWPVVIYQHGITG---AKENALAFAGTLAAA-GVATIAIDHP 485 (792)
T ss_pred CCCcEEEEeCCCCC---CHHHHHHHHHHHHhC-CcEEEEeCCC
Confidence 34689999999553 222232 3455544 4889999986
No 97
>KOG1552|consensus
Probab=38.32 E-value=44 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCccCCCCCC-CcHHHhcCCCeEEEEeCCCCCCccCccCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPY-DGSILASYGHLIVVTVNFRLGVLGKLIIV 76 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~-~~~~la~~~~~ivv~v~YRl~p~Gfl~~~ 76 (90)
...++++|.||=..-.| ... ....+...-++-+++-+|| |+-.++
T Consensus 58 ~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYS----GyG~S~ 103 (258)
T KOG1552|consen 58 AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYS----GYGRSS 103 (258)
T ss_pred ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEecc----cccccC
Confidence 35699999999865555 111 1344555567999999999 666665
No 98
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=37.07 E-value=1.2e+02 Score=23.94 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=31.1
Q ss_pred eEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCC---CCCC---C-cHHHhcCCCeEEEEeCCC
Q psy3086 8 VIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNS---GNPY---D-GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 8 ~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~---~~~~---~-~~~la~~~~~ivv~v~YR 66 (90)
.|..+||.|+.. .+.||++..+=.=+.... ..++ + ...++.. ++++|..+-|
T Consensus 31 rL~~dIy~Pa~~------g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~-GYavV~qDvR 89 (563)
T COG2936 31 RLAADIYRPAGA------GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQ-GYAVVNQDVR 89 (563)
T ss_pred EEEEEEEccCCC------CCCceeEEeeccccccccccCcchhhcccccceeecC-ceEEEEeccc
Confidence 678888888755 468999888711111111 1111 1 1244554 5999999988
No 99
>PRK11675 LexA regulated protein; Provisional
Probab=35.47 E-value=10 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=15.2
Q ss_pred CCCcceeeEEEEEEcccCCC
Q psy3086 1 MNKTQTSVIFIFFFAFSQNS 20 (90)
Q Consensus 1 ~~~~~~~~l~l~i~~p~~~~ 20 (90)
|.+.+++|.++++|.-.+.+
T Consensus 1 mak~~~d~~t~dlf~~~~~~ 20 (90)
T PRK11675 1 MAKEQTDRTTLDLFADERRP 20 (90)
T ss_pred CccccccchHHHHhccCCCC
Confidence 77888999999998744433
No 100
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=35.46 E-value=28 Score=23.59 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.9
Q ss_pred CCCceEEEEEcCCCCc
Q psy3086 25 GSPMPALILIHGESYE 40 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~ 40 (90)
.+...++||+||=.-.
T Consensus 15 ~~~~~vlvfVHGyn~~ 30 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNS 30 (233)
T ss_pred CCCCeEEEEEeCCCCC
Confidence 3467899999996543
No 101
>KOG3967|consensus
Probab=35.20 E-value=31 Score=24.20 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=13.7
Q ss_pred CCceEEEEEcCCCCccCC
Q psy3086 26 SPMPALILIHGESYEWNS 43 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~ 43 (90)
++...+|.|||.|.+...
T Consensus 99 ~~~kLlVLIHGSGvVrAG 116 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRAG 116 (297)
T ss_pred CccceEEEEecCceEecc
Confidence 445689999999987653
No 102
>KOG2542|consensus
Probab=34.72 E-value=34 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=12.7
Q ss_pred EEEEeCCCCCCccCccCCC
Q psy3086 59 IVVTVNFRLGVLGKLIIVK 77 (90)
Q Consensus 59 ivv~v~YRl~p~Gfl~~~~ 77 (90)
.-.+|+| ||||||.--+
T Consensus 180 lGlTIDY--GPFgFLD~yd 196 (500)
T KOG2542|consen 180 LGLTIDY--GPFGFLDRYD 196 (500)
T ss_pred eeeeecc--CCcccccccC
Confidence 3457776 8999998765
No 103
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=33.52 E-value=51 Score=22.98 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
.|.+|++||.+ ++...+. ...+.. . +.++.+++|
T Consensus 131 ~~~vl~~HG~~---~~~~~~~~~~~~l~~-~-~~v~~~d~~ 166 (371)
T PRK14875 131 GTPVVLIHGFG---GDLNNWLFNHAALAA-G-RPVIALDLP 166 (371)
T ss_pred CCeEEEECCCC---CccchHHHHHHHHhc-C-CEEEEEcCC
Confidence 57899999754 2222222 234433 3 888999988
No 104
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=31.26 E-value=37 Score=19.92 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.7
Q ss_pred CCCceEEEEEcCCCCcc
Q psy3086 25 GSPMPALILIHGESYEW 41 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~ 41 (90)
...+|+|++.++|.|..
T Consensus 67 ~~~lP~i~~~~~g~~~V 83 (124)
T cd02421 67 TLLLPAILLLKNGRACV 83 (124)
T ss_pred cccCCEEEEEcCCCEEE
Confidence 45789999999988754
No 105
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.03 E-value=1.1e+02 Score=20.74 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCccCCCCCC--CcHHHhcCCCeEEEEeC--CCCCCc
Q psy3086 29 PALILIHGESYEWNSGNPY--DGSILASYGHLIVVTVN--FRLGVL 70 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~--~~~~la~~~~~ivv~v~--YRl~p~ 70 (90)
|+||.+|+=. |-.... -+++++.++ ++++.++ +|.++.
T Consensus 28 P~VIv~hei~---Gl~~~i~~~a~rlA~~G-y~v~~Pdl~~~~~~~ 69 (236)
T COG0412 28 PGVIVLHEIF---GLNPHIRDVARRLAKAG-YVVLAPDLYGRQGDP 69 (236)
T ss_pred CEEEEEeccc---CCchHHHHHHHHHHhCC-cEEEechhhccCCCC
Confidence 9999999733 322222 256788766 6666554 444443
No 106
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=29.92 E-value=44 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.3
Q ss_pred CCceEEEEEcCCCCcc
Q psy3086 26 SPMPALILIHGESYEW 41 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~ 41 (90)
.+.-.|+|=||+||.-
T Consensus 113 d~Y~LIiwnHG~GW~p 128 (476)
T TIGR02806 113 DKYMLIMANHGGGAKD 128 (476)
T ss_pred cceeEEEEeCCCCCcC
Confidence 4567899999999984
No 107
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=29.86 E-value=30 Score=19.08 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCCceEEEEEcCCCCccCCCCC----CCc---HHHhcCCCeEEEEeCCC
Q psy3086 25 GSPMPALILIHGESYEWNSGNP----YDG---SILASYGHLIVVTVNFR 66 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~~~~----~~~---~~la~~~~~ivv~v~YR 66 (90)
.+.+|++|++ ++-||...... ... ..+.. .+++.+.++..
T Consensus 15 ~~~kpvlv~f-~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDF-GADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEE-ETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred HcCCCEEEEE-ECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence 3567999999 58888664431 222 22233 45888888763
No 108
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.61 E-value=28 Score=19.43 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=10.4
Q ss_pred CCceEEEEEcCCC
Q psy3086 26 SPMPALILIHGES 38 (90)
Q Consensus 26 ~~~Pviv~iHGGg 38 (90)
++.|.++.+|||.
T Consensus 29 ~~~~~~~lvhGga 41 (71)
T PF10686_consen 29 ARHPDMVLVHGGA 41 (71)
T ss_pred HhCCCEEEEECCC
Confidence 3458899999987
No 109
>PF03283 PAE: Pectinacetylesterase
Probab=29.17 E-value=50 Score=24.14 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.4
Q ss_pred CCceEEEEEcCCCCccCCC
Q psy3086 26 SPMPALILIHGESYEWNSG 44 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~ 44 (90)
...-.+||+-|||||....
T Consensus 48 ~s~~~li~leGGG~C~~~~ 66 (361)
T PF03283_consen 48 GSNKWLIFLEGGGWCWDAE 66 (361)
T ss_pred CCceEEEEeccchhcCChh
Confidence 3457899999999998843
No 110
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=28.22 E-value=46 Score=18.26 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=13.8
Q ss_pred CCCceEEEEEcCCCCcc
Q psy3086 25 GSPMPALILIHGESYEW 41 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~ 41 (90)
+.+.|.+.|+|.|.-..
T Consensus 9 G~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQ 25 (75)
T ss_pred ecCCCeEEEEECCEECc
Confidence 56789999999987654
No 111
>KOG1282|consensus
Probab=27.65 E-value=77 Score=24.12 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=13.8
Q ss_pred CCCceEEEEEcCCCCccC
Q psy3086 25 GSPMPALILIHGESYEWN 42 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g 42 (90)
.+..|+|+|+-||==|..
T Consensus 70 P~~dPlvLWLnGGPGCSS 87 (454)
T KOG1282|consen 70 PETDPLVLWLNGGPGCSS 87 (454)
T ss_pred CCCCCEEEEeCCCCCccc
Confidence 456799999999965553
No 112
>COG0400 Predicted esterase [General function prediction only]
Probab=26.47 E-value=66 Score=21.67 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=11.7
Q ss_pred CCCceEEEEEcCCC
Q psy3086 25 GSPMPALILIHGES 38 (90)
Q Consensus 25 ~~~~Pviv~iHGGg 38 (90)
+...|++|++||=|
T Consensus 15 ~p~~~~iilLHG~G 28 (207)
T COG0400 15 DPAAPLLILLHGLG 28 (207)
T ss_pred CCCCcEEEEEecCC
Confidence 45568999999998
No 113
>KOG0895|consensus
Probab=26.41 E-value=72 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=26.8
Q ss_pred cceeeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC
Q psy3086 4 TQTSVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY 47 (90)
Q Consensus 4 ~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~ 47 (90)
.+.-|++.++..|..++. .|-++++|.|||... ++.|
T Consensus 895 y~~~~f~fd~~~~~~yp~------~pp~~~~~s~~~r~n-pnly 931 (1101)
T KOG0895|consen 895 YQDGLFFFDFQFPQDYPS------SPPLVHYHSGGVRLN-PNLY 931 (1101)
T ss_pred cccceEEEEeecCCCCCC------CCCceEeecCceeeC-cccc
Confidence 355688889988887753 577899999997654 3434
No 114
>KOG4153|consensus
Probab=26.00 E-value=54 Score=23.62 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.1
Q ss_pred CCCceEEEEEcCCC
Q psy3086 25 GSPMPALILIHGES 38 (90)
Q Consensus 25 ~~~~Pviv~iHGGg 38 (90)
.++.||.+.+|||.
T Consensus 254 ~~~KpvFlVfHGgS 267 (358)
T KOG4153|consen 254 KSKKPVFLVFHGGS 267 (358)
T ss_pred cccCceEEEEeCCC
Confidence 46789999999997
No 115
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=25.88 E-value=49 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.1
Q ss_pred CCceEEEEEcCCCCccCC
Q psy3086 26 SPMPALILIHGESYEWNS 43 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~ 43 (90)
.+...+||+||--|-.-+
T Consensus 55 ~~y~~viFvHGCFWh~H~ 72 (150)
T COG3727 55 PKYRCVIFVHGCFWHGHH 72 (150)
T ss_pred cCceEEEEEeeeeccCCc
Confidence 345688999998886544
No 116
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=25.81 E-value=1.1e+02 Score=23.19 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCccCCCCCCC---cHHHh-cCCCeEEEEeCCC
Q psy3086 26 SPMPALILIHGESYEWNSGNPYD---GSILA-SYGHLIVVTVNFR 66 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g~~~~~~---~~~la-~~~~~ivv~v~YR 66 (90)
...|.+|+|||-+-. +....+. ...+. .+.++-|+.+|++
T Consensus 39 ~~~ptvIlIHG~~~s-~~~~~w~~~l~~al~~~~~d~nVI~VDw~ 82 (442)
T TIGR03230 39 HETKTFIVIHGWTVT-GMFESWVPKLVAALYEREPSANVIVVDWL 82 (442)
T ss_pred CCCCeEEEECCCCcC-CcchhhHHHHHHHHHhccCCCEEEEEECC
Confidence 457899999996531 2111111 12332 2336888999988
No 117
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=25.77 E-value=51 Score=19.19 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=13.5
Q ss_pred CCCceEEEEEcCCCCcc
Q psy3086 25 GSPMPALILIHGESYEW 41 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~ 41 (90)
.-.+|+|++..+|.|..
T Consensus 67 ~~~lP~I~~~~~g~~~V 83 (121)
T cd02417 67 RLPLPALAWDDDGGHFI 83 (121)
T ss_pred cCCCCEEEEccCCCEEE
Confidence 45689999988887754
No 118
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=25.21 E-value=42 Score=19.67 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.8
Q ss_pred CCCceEEEEEcCCCC
Q psy3086 25 GSPMPALILIHGESY 39 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~ 39 (90)
.+.+|++|++|+-..
T Consensus 15 ~~~K~llv~~~~~~c 29 (114)
T cd02958 15 SEKKWLLVYLQSEDE 29 (114)
T ss_pred hhCceEEEEEecCCc
Confidence 467899999999553
No 119
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=25.12 E-value=74 Score=19.57 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCccCCCCCCCcHHHhcCC-CeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDGSILASYG-HLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~~~la~~~-~~ivv~v~YR 66 (90)
.|.++++||.......... ....+.... .+-++.++.|
T Consensus 21 ~~~i~~~hg~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 59 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRP-VFKVLPALAARYRVIAPDLR 59 (282)
T ss_pred CCeEEEeCCCCCchhhhHH-HHHHhhccccceEEEEeccc
Confidence 4589999999864443221 012222221 1678888888
No 120
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=24.51 E-value=42 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.8
Q ss_pred EEEEEcCCCCccCCCC
Q psy3086 30 ALILIHGESYEWNSGN 45 (90)
Q Consensus 30 viv~iHGGg~~~g~~~ 45 (90)
-.+.+|||||-.-...
T Consensus 222 ~s~vi~~GGwK~~~~e 237 (365)
T PF04443_consen 222 GSIVIHGGGWKGRRKE 237 (365)
T ss_pred CCEEEeCCCCCccccC
Confidence 4677999999876444
No 121
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=24.12 E-value=55 Score=18.72 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=10.2
Q ss_pred CceEEEEEcCCCCc
Q psy3086 27 PMPALILIHGESYE 40 (90)
Q Consensus 27 ~~Pviv~iHGGg~~ 40 (90)
+..+.||+||--|=
T Consensus 55 ~~k~aIFVdGCFWH 68 (75)
T PF03852_consen 55 KYKIAIFVDGCFWH 68 (75)
T ss_dssp GGTEEEEEE-TTTT
T ss_pred CCCEEEEEecceeC
Confidence 35689999998883
No 122
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=23.36 E-value=41 Score=24.64 Aligned_cols=56 Identities=18% Similarity=-0.031 Sum_probs=28.7
Q ss_pred eeEEEEEEcccCCCCCCCCCCceEEEEEcCCCCccCCCCCC-CcHHHhcCCCeEEEEeCCC
Q psy3086 7 SVIFIFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNPY-DGSILASYGHLIVVTVNFR 66 (90)
Q Consensus 7 ~~l~l~i~~p~~~~~~~~~~~~Pviv~iHGGg~~~g~~~~~-~~~~la~~~~~ivv~v~YR 66 (90)
.....+-|+-...-+ ...||++++-|.+=+....-.. ....+|.+.+..+|.+++|
T Consensus 12 ~tf~qRY~~n~~~~~----~~gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHR 68 (434)
T PF05577_consen 12 GTFSQRYWVNDQYYK----PGGPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHR 68 (434)
T ss_dssp -EEEEEEEEE-TT------TTSEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--T
T ss_pred CeEEEEEEEEhhhcC----CCCCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehh
Confidence 344455555444332 3379999996665322110001 2357888889999999999
No 123
>PRK11071 esterase YqiA; Provisional
Probab=23.11 E-value=53 Score=21.32 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCccCCCCCCCc----HHHhc-CCCeEEEEeCCC
Q psy3086 28 MPALILIHGESYEWNSGNPYDG----SILAS-YGHLIVVTVNFR 66 (90)
Q Consensus 28 ~Pviv~iHGGg~~~g~~~~~~~----~~la~-~~~~ivv~v~YR 66 (90)
.|.++++||-+= +...+.. ..+.. ..++.++.++.|
T Consensus 1 ~p~illlHGf~s---s~~~~~~~~~~~~l~~~~~~~~v~~~dl~ 41 (190)
T PRK11071 1 MSTLLYLHGFNS---SPRSAKATLLKNWLAQHHPDIEMIVPQLP 41 (190)
T ss_pred CCeEEEECCCCC---CcchHHHHHHHHHHHHhCCCCeEEeCCCC
Confidence 378999999542 2222221 22222 124677788777
No 124
>KOG3703|consensus
Probab=22.62 E-value=29 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.2
Q ss_pred EeCCCCCCccCccCCC---------------CCchhhhhhh
Q psy3086 62 TVNFRLGVLGKLIIVK---------------KINEGVNDLV 87 (90)
Q Consensus 62 ~v~YRl~p~Gfl~~~~---------------~~n~gl~D~~ 87 (90)
.++|+++.+||....+ -.|.++.|+-
T Consensus 154 CveY~VgiigF~~~~e~slls~qlkgFpl~l~~Nl~lkd~~ 194 (873)
T KOG3703|consen 154 CVEYGVGIIGFFSASENSLLSAQLKGFPLFLHSNLRLKDCS 194 (873)
T ss_pred HHHhCCceEEEecCCccchhheeecCcceeeecccchhhhc
Confidence 4689999999998876 2699998863
No 125
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=22.47 E-value=51 Score=18.52 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.2
Q ss_pred CCCceEEEEEcCCCCccCC
Q psy3086 25 GSPMPALILIHGESYEWNS 43 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~~g~ 43 (90)
+.+.|.+-|+|+|--+..+
T Consensus 9 G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 9 GNPKPTLQWFHEGAILNES 27 (79)
T ss_pred EeCCCceEEEECCEECCCC
Confidence 5788999999999766543
No 126
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=22.41 E-value=2.5e+02 Score=19.81 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=11.8
Q ss_pred HHHhcCCCeEEEEeCCC
Q psy3086 50 SILASYGHLIVVTVNFR 66 (90)
Q Consensus 50 ~~la~~~~~ivv~v~YR 66 (90)
..+.++ ++.|+.+|.|
T Consensus 68 ~~l~~~-G~~V~~~D~r 83 (332)
T TIGR01607 68 ENFNKN-GYSVYGLDLQ 83 (332)
T ss_pred HHHHHC-CCcEEEeccc
Confidence 345454 5999999998
No 127
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=22.06 E-value=69 Score=19.81 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=12.1
Q ss_pred CCCceEEEEEcCCCCc
Q psy3086 25 GSPMPALILIHGESYE 40 (90)
Q Consensus 25 ~~~~Pviv~iHGGg~~ 40 (90)
-.+..++||+||+-|=
T Consensus 53 ~~~~klaIfVDGcfWH 68 (117)
T TIGR00632 53 FDEYRCVIFIHGCFWH 68 (117)
T ss_pred ecCCCEEEEEcccccc
Confidence 3556789999998654
No 128
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=22.00 E-value=30 Score=25.53 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=10.1
Q ss_pred CCceEEEEEcCCCC
Q psy3086 26 SPMPALILIHGESY 39 (90)
Q Consensus 26 ~~~Pviv~iHGGg~ 39 (90)
++.-+|+|=||+||
T Consensus 97 ~~y~LIlw~HG~Gw 110 (397)
T PF03415_consen 97 DRYGLILWDHGGGW 110 (397)
T ss_dssp CEEEEEEES-B-TT
T ss_pred ccEEEEEEECCCCC
Confidence 45678999999999
No 129
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=21.71 E-value=73 Score=21.08 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCccCCCCCCCcHHHhcCCCeEEEEeCCCCCCccCccC
Q psy3086 27 PMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRLGVLGKLII 75 (90)
Q Consensus 27 ~~Pviv~iHGGg~~~g~~~~~~~~~la~~~~~ivv~v~YRl~p~Gfl~~ 75 (90)
+.||+.+++|-+... ...++...+.++.+.+-+++..|+...
T Consensus 61 ~kpvia~v~g~a~s~-------g~~la~aaD~i~a~p~a~vg~iGv~~~ 102 (207)
T TIGR00706 61 KKPVVASMGGVAASG-------GYYIAMAADEIVANPGTITGSIGVILQ 102 (207)
T ss_pred CCCEEEEECCccchH-------HHHHHhcCCEEEECCCCeEEeeeEEEe
Confidence 479999987755321 124455556666666666666555543
No 130
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=96 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=16.0
Q ss_pred eEEEEEcCCCCccCCCCCCC
Q psy3086 29 PALILIHGESYEWNSGNPYD 48 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~ 48 (90)
++=|.+||||++.|+....+
T Consensus 30 gl~~~L~~GGl~aG~r~pl~ 49 (212)
T COG3531 30 GLEVVLHGGGLRAGNRRPLD 49 (212)
T ss_pred CceEEEecCCccCCCCCCCC
Confidence 66788999999999776543
No 131
>KOG0429|consensus
Probab=21.68 E-value=1.6e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=20.8
Q ss_pred cceeeEEEEEEcccCCCCCCCCCCceEEEEE
Q psy3086 4 TQTSVIFIFFFAFSQNSMDDIGSPMPALILI 34 (90)
Q Consensus 4 ~~~~~l~l~i~~p~~~~~~~~~~~~Pviv~i 34 (90)
...+.+..+|++|.+-+. +..+|.+||-
T Consensus 62 yaggVFRFtIliPdnfPd---d~dlPrvvF~ 89 (258)
T KOG0429|consen 62 YAGGVFRFTILIPDNFPD---DSDLPRVVFE 89 (258)
T ss_pred ccCceEEEEEEcCccCCC---cCCCCeEEee
Confidence 345677788999987764 5778988874
No 132
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=21.61 E-value=89 Score=20.10 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHhcCCCeEEEEeCCCCCC
Q psy3086 50 SILASYGHLIVVTVNFRLGV 69 (90)
Q Consensus 50 ~~la~~~~~ivv~v~YRl~p 69 (90)
+.++++ +++|+.++||-+.
T Consensus 8 ~~la~~-Gy~v~~~~~rGs~ 26 (213)
T PF00326_consen 8 QLLASQ-GYAVLVPNYRGSG 26 (213)
T ss_dssp HHHHTT-T-EEEEEE-TTSS
T ss_pred HHHHhC-CEEEEEEcCCCCC
Confidence 345555 5999999999555
No 133
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=20.61 E-value=1.6e+02 Score=22.49 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCccC-CCCCCCcHHHhcCCCeEEEEeCCCCCCccCccCC-CCCchhhhhhhhcC
Q psy3086 26 SPMPALILIHGESYEWN-SGNPYDGSILASYGHLIVVTVNFRLGVLGKLIIV-KKINEGVNDLVFQS 90 (90)
Q Consensus 26 ~~~Pviv~iHGGg~~~g-~~~~~~~~~la~~~~~ivv~v~YRl~p~Gfl~~~-~~~n~gl~D~~~a~ 90 (90)
..+|.|++.- |+... ++...+++.|.+ ..-|+++|| -|..+- ++.+|..+|+..|+
T Consensus 61 ~drPtV~~T~--GY~~~~~p~r~Ept~Lld---~NQl~vEhR----fF~~SrP~p~DW~~Lti~QAA 118 (448)
T PF05576_consen 61 FDRPTVLYTE--GYNVSTSPRRSEPTQLLD---GNQLSVEHR----FFGPSRPEPADWSYLTIWQAA 118 (448)
T ss_pred CCCCeEEEec--CcccccCccccchhHhhc---cceEEEEEe----eccCCCCCCCCcccccHhHhh
Confidence 4457665543 33222 222224455544 457899999 344443 57888888876653
No 134
>PLN02578 hydrolase
Probab=20.29 E-value=99 Score=21.90 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCccCCCCCCC--cHHHhcCCCeEEEEeCCC
Q psy3086 29 PALILIHGESYEWNSGNPYD--GSILASYGHLIVVTVNFR 66 (90)
Q Consensus 29 Pviv~iHGGg~~~g~~~~~~--~~~la~~~~~ivv~v~YR 66 (90)
|.+|++||-+- +...+. ...++. ++-|+.+|+|
T Consensus 87 ~~vvliHG~~~---~~~~w~~~~~~l~~--~~~v~~~D~~ 121 (354)
T PLN02578 87 LPIVLIHGFGA---SAFHWRYNIPELAK--KYKVYALDLL 121 (354)
T ss_pred CeEEEECCCCC---CHHHHHHHHHHHhc--CCEEEEECCC
Confidence 45789998543 222221 234443 3889999999
No 135
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.27 E-value=32 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=8.9
Q ss_pred EEcCCCCccCC
Q psy3086 33 LIHGESYEWNS 43 (90)
Q Consensus 33 ~iHGGg~~~g~ 43 (90)
-||||-|..|-
T Consensus 162 ~ihGGFWvK~v 172 (179)
T COG4843 162 TIHGGFWVKGV 172 (179)
T ss_pred ceecceehHHH
Confidence 38999998774
No 136
>PLN02209 serine carboxypeptidase
Probab=20.14 E-value=1.5e+02 Score=22.23 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=11.0
Q ss_pred CCCceEEEEEcCC
Q psy3086 25 GSPMPALILIHGE 37 (90)
Q Consensus 25 ~~~~Pviv~iHGG 37 (90)
.+..|+++|+-||
T Consensus 65 ~~~~Pl~lWlnGG 77 (437)
T PLN02209 65 PQEDPLIIWLNGG 77 (437)
T ss_pred CCCCCEEEEECCC
Confidence 4557999999999
Done!