RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3086
         (90 letters)



>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family. 
          Length = 510

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 19  NSMDDIGSPMPALILIHGESYEWNSG--NPYDGSILASYGHLIVVTVNFRLGVLG 71
             +      +P ++ IHG  ++  S   + YDG  LA+   ++VVT+N+RLG LG
Sbjct: 91  PKLASESKKLPVMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALG 145


>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
          Length = 491

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 27  PMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLGKL 73
            +P ++ IHG  Y   SG+   YDGS LA+ G ++VV+VN+RLG LG L
Sbjct: 93  KLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFL 141


>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
           lipases, cholinesterases, etc.)  These enzymes act on
           carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
           involves three residues (catalytic triad): a serine, a
           glutamate or aspartate and a histidine.These catalytic
           residues are responsible for the nucleophilic attack on
           the carbonyl carbon atom of the ester bond. In contrast
           with other alpha/beta hydrolase fold family members,
           p-nitrobenzyl esterase and acetylcholine esterase have a
           Glu instead of Asp at the active site carboxylate.
          Length = 493

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 25  GSPMPALILIHGESYEWNSGNPYDGSILASYGH-LIVVTVNFRLGVLG 71
           G+ +P ++ IHG  + + SG+ Y G  LA  G  +IVV++N+RLGVLG
Sbjct: 92  GNSLPVMVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLG 139


>gnl|CDD|180829 PRK07084, PRK07084, fructose-bisphosphate aldolase; Provisional.
          Length = 321

 Score = 28.5 bits (64), Expect = 0.38
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 21/69 (30%)

Query: 23  DIGSPMP-ALILIHGESYEW---------------NSGNPYDGSI-----LASYGHLIVV 61
           ++G P+P  L L HG+S+E                 S  PY+ ++     +  Y H   V
Sbjct: 81  ELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDV 140

Query: 62  TVNFRLGVL 70
           TV   LGVL
Sbjct: 141 TVEGELGVL 149


>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
          Length = 249

 Score = 28.1 bits (63), Expect = 0.52
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 28 MPALILI-HGESYEWNSGNPYDG 49
             L+L+ HGES EWN+ N + G
Sbjct: 4  TYTLVLLRHGES-EWNAKNLFTG 25


>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
          Length = 228

 Score = 27.9 bits (62), Expect = 0.64
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 28 MPALILI-HGESYEWNSGNPYDG 49
          MP LIL  HG+S EWN+ N + G
Sbjct: 1  MPKLILCRHGQS-EWNAKNLFTG 22


>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
          Length = 228

 Score = 26.4 bits (58), Expect = 2.2
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 28 MPALILI-HGESYEWNSGNPYDG 49
          M  L+LI HG+S EWN  N + G
Sbjct: 1  MAKLVLIRHGQS-EWNLSNQFTG 22


>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
          Length = 228

 Score = 25.5 bits (56), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 28 MPALILI-HGESYEWNSGNPYDG 49
          M  LIL+ HG+S  WN+ N + G
Sbjct: 1  MALLILLRHGQS-VWNAKNLFTG 22


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,642,051
Number of extensions: 388843
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 16
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)