RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3086
(90 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 70.2 bits (172), Expect = 5e-16
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 17 SQNSMDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRLGVLGKL 73
+++ + D G P P ++ IHG SY +GN YDGS+LASYG++IV+TVN+RLGVLG L
Sbjct: 120 TEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGFL 176
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 69.9 bits (171), Expect = 7e-16
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 17 SQNSMDDIGSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
+ + + +P LI I+G + S Y+ I+A+ G++IV + +R+G G
Sbjct: 130 HNGNPQNTTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFG 186
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 69.0 bits (169), Expect = 1e-15
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRLGVLG 71
+ +P ++ IHG + + YDG LA++ +++VVT+ +RLG+ G
Sbjct: 112 KNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWG 158
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 67.0 bits (164), Expect = 7e-15
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 25 GSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
SP P LI I+G + + + YDG LA ++V++N+R+G G
Sbjct: 109 ASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFG 157
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 65.8 bits (161), Expect = 2e-14
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 25 GSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
LI I+G ++ + + YDG LA +IVV++N+R+G LG
Sbjct: 104 PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALG 152
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 64.7 bits (158), Expect = 5e-14
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 22 DDIGSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
++ I+G + S Y+G LA +++V++++R+G G
Sbjct: 103 SPRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFG 154
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 61.5 bits (150), Expect = 6e-13
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 25 GSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
G P L IHG ++ + SG+ YDG+ A +G ++VVT+N+R+ V G
Sbjct: 96 GKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFG 144
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 61.1 bits (149), Expect = 8e-13
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 25 GSPMPALILIHGESYEWNSGN--PYDGSILASYGHLIVVTVNFRLGVLG 71
+P ++ IHG ++ +G+ YDGS LA+ G +IVVT+N+RLG G
Sbjct: 94 SQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFG 142
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 60.1 bits (146), Expect = 2e-12
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 23 DIGSPMPALILIHGESYEWNSGNP--------YDGSILASYGHLIVVTVNFRLGVLG 71
++ +P +I I+G ++ + YDG +A+ G++IVVT N+R+G LG
Sbjct: 93 EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLG 149
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 52.7 bits (127), Expect = 7e-10
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSIL--ASYGHLIVVTVNFRLGVLG 71
S +P + I G Y NS Y+G+ + AS ++ VT N+R+G LG
Sbjct: 99 QSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALG 147
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 49.0 bits (117), Expect = 1e-08
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHL-----IVVTVNFRLGVLG 71
G+ +P ++ I G +E S + + + + L I V VN+R+ G
Sbjct: 111 GANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWG 162
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 49.0 bits (117), Expect = 2e-08
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGH-----LIVVTVNFRLGVLG 71
+ +P ++ I+G ++ + S Y G+ ++ V++N+R G G
Sbjct: 119 DAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFG 170
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 47.3 bits (113), Expect = 6e-08
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 GSPMPALILIHGESYEWNSGNP-YDGSILASYGHLIVVTVNFRLGVLG 71
+ +P L+ IHG + + SG+ G +IV+T N+RL V G
Sbjct: 112 FAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYG 159
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 33.3 bits (76), Expect = 0.005
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
PALI HG Y NSG+ D + G VV ++ R
Sbjct: 105 EGKHPALIRFHG--YSSNSGDWNDKLNYVAAGF-TVVAMDVR 143
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 31.8 bits (72), Expect = 0.017
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 23 DIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
+P ++ G Y G P+D S G I ++ R
Sbjct: 90 LEEEKLPCVVQYIG--YNGGRGFPHDWLFWPSMG-YICFVMDTR 130
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 30.4 bits (69), Expect = 0.044
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDG--SILASYGHLIVVTVNFRL 67
P P +I HG S YD +VV+VN+R
Sbjct: 109 AEPFPVIIFFHGGSFVHSSASST---IYDSLCRRFVKLSKGVVVSVNYRR 155
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 30.0 bits (68), Expect = 0.057
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDG--SILASYGHLIVVTVNFRL 67
+ +P ++ HG S + +A + +++ +V++RL
Sbjct: 80 SAKLPLVVYFHGGGFILFSAAST---IFHDFCCEMAVHAGVVIASVDYRL 126
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 30.0 bits (68), Expect = 0.061
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDG--SILASYGHLIVVTVNFRL 67
G +P ++ HG S YD L +VV+VN+R
Sbjct: 110 GDIVPVILFFHGGSFAHSSANSA---IYDTLCRRLVGLCKCVVVSVNYRR 156
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 30.0 bits (68), Expect = 0.067
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 25 GSPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
G +PA++ HG + G+ +D LA+ +VV+V++RL
Sbjct: 73 GERLPAVVYYHGGG--FVLGSVETHDHVCRRLANLSGAVVVSVDYRL 117
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 29.5 bits (66), Expect = 0.11
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASY---GHLIVVTVNFRLG 68
G+P+ + +HG W + + S LA V ++ L
Sbjct: 60 GTPVGLFVFVHGGY--WMAFDKSSWSHLAVGALSKGWAVAMPSYELC 104
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 29.1 bits (65), Expect = 0.13
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 22 DDIGSPMPALILIHGESYEWNSGNPYDGSILASYGH---LIVVTVNFRL 67
+ + P + +HG W + + V +++ L
Sbjct: 76 EKTTNQAPLFVFVHGGY--WQEMDMSMSCSIVGPLVRRGYRVAVMDYNL 122
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 28.9 bits (64), Expect = 0.17
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 12/47 (25%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
+ A+ + G S W G +AS+G +V+ ++
Sbjct: 93 NNTYGAIAISPGYTGTQSSIAW------LGERIASHGF-VVIAIDTN 132
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 28.6 bits (64), Expect = 0.19
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
+P P ++L+HG +S W++ LA+ G VV N+R
Sbjct: 357 PTPGPTVVLVHGGPFAEDSDSWDTFAAS----LAAAGF-HVVMPNYR 398
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 28.4 bits (64), Expect = 0.29
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 25 GSPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
+P P ++ H + GN LA VV+V++RL
Sbjct: 82 PTPAPVVVYCHAGG--FALGNLDTDHRQCLELARRARCAVVSVDYRL 126
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 28.2 bits (63), Expect = 0.34
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 27 PMPALILIHGESYEWN-SGNPYDGSILASYGHLIVVTVNFR 66
P PA++ HG Y + G ++ A +G + R
Sbjct: 81 PHPAIVKYHG--YNASYDGEIHEMVNWALHG-YATFGMLVR 118
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 27.2 bits (61), Expect = 0.56
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 22 DDIGSPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
+ + P PAL+ HG S W G+ +D LA G +V +V++RL
Sbjct: 68 EGVEPPYPALVYYHGGS--WVVGDLETHDPVCRVLAKDGRAVVFSVDYRL 115
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 27.2 bits (61), Expect = 0.61
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 22 DDIGSPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
D+ P+P L+ IHG + G D +A V V +RL
Sbjct: 73 DNTAGPVPVLLWIHGGG--FAIGTAESSDPFCVEVARELGFAVANVEYRL 120
>3h04_A Uncharacterized protein; protein with unknown function,
structural genomics, MCSG, PS protein structure
initiative; 1.90A {Staphylococcus aureus subsp}
Length = 275
Score = 27.1 bits (60), Expect = 0.74
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSI--LASYGHLIVVTVNFRL 67
++ IHG + N + + + ++ +++RL
Sbjct: 26 QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEHY-DLIQLSYRL 69
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 26.9 bits (60), Expect = 0.95
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 25 GSPMPALILIHGESYEWNSGNP--YDG--SILASYGHLIVVTVNFRL 67
+ L +HG + GN +D +LA Y V+ +++ L
Sbjct: 84 PTSQATLYYLHGGG--FILGNLDTHDRIMRLLARYTGCTVIGIDYSL 128
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 26.5 bits (59), Expect = 1.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 23 DIGSPMPALILIHG 36
D G ++L+HG
Sbjct: 31 DCGQGDETVVLLHG 44
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 26.4 bits (59), Expect = 1.4
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 25 GSPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
+ +PA++ HG + G+ +D L+ +VV+V++RL
Sbjct: 70 AAGLPAVLYYHGGG--FVFGSIETHDHICRRLSRLSDSVVVSVDYRL 114
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 26.1 bits (58), Expect = 1.5
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 27 PMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
P L+ HG + + +D +A + VV+V++RL
Sbjct: 78 DSPVLVYYHGGG--FVICSIESHDALCRRIARLSNSTVVSVDYRL 120
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 26.1 bits (58), Expect = 1.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 26 SPMPALILIHGESYEWNSGNP--YDGSI--LASYGHLIVVTVNFRL 67
P L+ HG + G+ YD + + + ++V++RL
Sbjct: 88 GPYGVLVYYHGGG--FVLGDIESYDPLCRAITNSCQCVTISVDYRL 131
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE; 1.85A
{Saccharomyces cerevisiae} SCOP: c.69.1.32
Length = 273
Score = 26.1 bits (57), Expect = 1.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 26 SPMPALILIHGESYEWNSGNPYDGSILASYGHL---------IVVTVNFRL 67
+ A+I IHG + WN + ++ +RL
Sbjct: 39 NTREAVIYIHGGA--WNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL 87
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 26.0 bits (57), Expect = 1.7
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 27 PMPALILIHGESYEWNSGNPYDGS----ILASYGHLIVVTVNFR 66
MP ++ +HG G+ + G I +T + R
Sbjct: 27 GMPGVLFVHG-----WGGSQHHSLVRAREAVGLG-CICMTFDLR 64
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 25.9 bits (57), Expect = 2.0
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 10/47 (21%)
Query: 25 GSPMPALILIHG-----ESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
P +++ HG + Y S G V VN+
Sbjct: 421 DELPPYVVMAHGGPTSRVPAVLDLDVAY----FTSRGIG-VADVNYG 462
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 25.6 bits (57), Expect = 2.5
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 22 DDIGSPMPALILIHG 36
GS +++ G
Sbjct: 14 KVKGSGKASIMFAPG 28
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 24.7 bits (54), Expect = 5.5
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 22 DDIGSPMPALILIHG 36
G P +I +HG
Sbjct: 75 LRWGGSAPRVIFLHG 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.413
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,375,769
Number of extensions: 71325
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 38
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)