RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3086
(90 letters)
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 37.7 bits (86), Expect = 5e-05
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 23 DIGSPMPALILIHGESYEWNSGNP--------YDGSILASYGHLIVVTVNFRLGV 69
++ +P +I I+G ++ + YDG +A+ G++IVVT N+R+G
Sbjct: 93 EVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP 147
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 35.1 bits (79), Expect = 5e-04
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRLGVLGKLIIVKKINEGVN 84
+ +P ++ IHG + + YDG LA++ +++VVT+ +RLG+ G + + G
Sbjct: 110 KNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGNW 169
Query: 85 DLVFQ 89
+ Q
Sbjct: 170 GHLDQ 174
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 30.5 bits (67), Expect = 0.020
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 DDIGSPMPALILIHGESYEWNSGNP--YDGSILASYGHLIVVTVNFRLGVLG 71
SP P LI I+G + + + YDG LA ++V++N+R+G G
Sbjct: 106 PRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFG 157
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 30.1 bits (66), Expect = 0.029
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHL-----IVVTVNFRLGVLGKL 73
G+ +P ++ I G +E S + + + + L I V VN+R+ G L
Sbjct: 111 GANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFL 164
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 26.7 bits (59), Expect = 0.23
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 21 MDDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFRL-GVLGKLIIVKKI 79
D I +P+ I ++ +S G L+ +NF L ++V
Sbjct: 26 TDSIITPLINRIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPY 85
Query: 80 N 80
N
Sbjct: 86 N 86
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 26.0 bits (55), Expect = 0.60
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 26 SPMPALILIHGESYEWNSGNPYDGSILASY 55
+ A+I IHG ++ P D + LA+
Sbjct: 29 NTREAVIYIHGGAWNDPENTPNDFNQLANT 58
>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic
domain {Shigella flexneri 2a str. 2457T [TaxId:
198215]}
Length = 246
Score = 25.7 bits (55), Expect = 0.77
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 25 GSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNF 65
P +L+ GE + + + L L
Sbjct: 41 AEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAVYVL 81
>d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId:
1905]}
Length = 260
Score = 25.4 bits (54), Expect = 0.99
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 22 DDIGSPMPALILIHGESYEWNSGNPYDGSILASYGHLIVVTVNFR 66
A+++ G + +S G LAS G +V T++
Sbjct: 46 STADGTFGAVVISPGFTAYQSSIAWL-GPRLASQGF-VVFTIDTN 88
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 24.3 bits (51), Expect = 2.7
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 29 PALILIHGESYEWNSGNPYDGSILASYGHLIVVTVN 64
P L+ HG + S +D V+
Sbjct: 80 PVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVS 115
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 24.0 bits (50), Expect = 3.0
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 23 DIGSPMPALILIHG 36
G L+L+HG
Sbjct: 6 TKGQGNVHLVLLHG 19
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 24.2 bits (52), Expect = 3.0
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 2 NKTQTSVIF--IFFFAFSQNSMDDIGSPMPALILIHGESYEWNSGNP-YDGSILASYGHL 58
N+ +I I ++ AL L+HG N N YD S+
Sbjct: 247 NRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSL------Q 300
Query: 59 IVVTVNFRLGVLG 71
VV + GV+
Sbjct: 301 FVVGRDGTCGVVC 313
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like
protein 6, DPP6, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 23.9 bits (50), Expect = 4.0
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 23 DIGSPMPALILIHGESYEWNSGNPYDGS----ILASYGHLIVVTVNFRLGVLGK 72
+ P L+++ G + ++ S +++S+G ++V G G
Sbjct: 26 TDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGT 79
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
{Lactococcus lactis [TaxId: 1358]}
Length = 409
Score = 22.9 bits (48), Expect = 8.3
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 18 QNSMDDIGSPMPALILIHGESYEWNSGNPYDGS--ILASYGHLIVVTVNFRLGVLGKLII 75
+ +++ I + + E++++ G I+ L + I
Sbjct: 5 KRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYI 64
Query: 76 VK 77
Sbjct: 65 EY 66
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 22.8 bits (48), Expect = 9.4
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 23 DIGSPMPALILIHG-------ESYEWNSGNPYDG 49
D G P+ ++++ E + P +
Sbjct: 214 DFGKPLHVMVVLAKTLHFMEFECLREFADAPAEL 247
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.413
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,245
Number of extensions: 13584
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 19
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)