RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3087
(192 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 78.5 bits (194), Expect = 3e-17
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 1 MDIVAALHWLRENLHAFGGDPDRITLMGHGTGASLANILAVSPVAKG 47
+D V AL W+++N+ AFGGDPD +TL G GA+ ++L +SP ++G
Sbjct: 161 LDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLLSPASRG 207
Score = 62.4 bits (152), Expect = 1e-11
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 52 TGSVRGEDVPYVLGLPLVDGGPFFPHNYSDQDAAISKQLIHYIANFARKGDPNGPTPPAS 111
G G+D+PYV G PL YS+++ +S++++ Y NFA+ G+PNG
Sbjct: 425 MGVSHGDDLPYVFGNPL-----MRKLLYSEEEEILSRRMMGYWTNFAKTGNPNGEAF--- 476
Query: 112 LDPNHQVPFWDTYDSINQLYLELGSKTEIRNHYRGHKMSLW 152
+P W Y S YLE+ N R + W
Sbjct: 477 -----GLPVWPPYTSEE--YLEITLLNISTNGLREEDCNFW 510
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 60.0 bits (146), Expect = 6e-11
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 2 DIVAALHWLRENLHAFGGDPDRITLMGHGTGASLANILAVSPVAKG 47
D AL W+++N+ AFGGDPD +T+ G G + ++L +SP +KG
Sbjct: 156 DQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKG 201
Score = 52.7 bits (127), Expect = 2e-08
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 53 GSVRGEDVPYVLGLPLVDGGPFFPHNYSDQDAAISKQLIHYIANFARKGDPNGPTPPASL 112
G+V G+++ +V G PL+ G +++ +S+ ++ Y ANFA+ G+PN
Sbjct: 418 GTVHGDEIFFVFGNPLLKEG------LREEEEKLSRTMMKYWANFAKTGNPNTEGNL--- 468
Query: 113 DPNHQVPFWDTYDSINQLYLELG-SKTEIRN 142
W Y S ++ YL++ TEI+
Sbjct: 469 ------VVWPAYTSESEKYLDINIEGTEIKQ 493
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 58.6 bits (142), Expect = 2e-10
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 2 DIVAALHWLRENLHAFGGDPDRITLMGHGTGA-SLANILAVSPVAKGKCYR 51
D + AL W+R+N+ AFGGDP +TL G GA S+ +LAV P AKG +R
Sbjct: 160 DQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHR 209
Score = 42.0 bits (99), Expect = 9e-05
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 53 GSVRGEDVPYVLGLPLVDGGPFFPHNYSDQDAAISKQLIHYIANFARKGDPNGPTPPASL 112
G+ ++ V G + G + A +S+Q+ ANFAR G PNG
Sbjct: 399 GAPHATELSLVFGNLVALGSA---AQTARATAKLSRQMQDAWANFARTGSPNGLG----- 450
Query: 113 DPNHQVPFWDTYDSINQLYLELGSKTEIRNHYRGHKMSLW 152
+P W Y + L L + ++ N R + W
Sbjct: 451 -----LPDWPAYTEERRATLVLDPEIKVENDPRRDRREAW 485
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 50.3 bits (120), Expect = 1e-07
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 1 MDIVAALHWLRENLHAFGGDPDRITLMGHGTGASLANILAVSPVAKGKCYRTGSVRGEDV 60
D AA WLR N G DP RI + G G LA LA++ +G
Sbjct: 131 EDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQ------ 184
Query: 61 PYVLGLPLVD 70
VL PL+D
Sbjct: 185 --VLISPLLD 192
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 47.6 bits (114), Expect = 6e-07
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 2 DIVAALHWLRENLHAFGGDPDRITLMGHGTGASLANILAV 41
D AAL WL E+ G DP RI + G G +LA +A+
Sbjct: 51 DAYAALRWLAEHAWELGADPSRIAVAGDSAGGNLAAAVAL 90
>gnl|CDD|215228 PLN02408, PLN02408, phospholipase A1.
Length = 365
Score = 31.0 bits (70), Expect = 0.34
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 14 LHAFGGDPDRITLMGHGTGASLANILA 40
L ++G +P +T+ GH GA+LA + A
Sbjct: 192 LQSYGDEPLSLTITGHSLGAALATLTA 218
>gnl|CDD|180140 PRK05575, cbiC, precorrin-8X methylmutase; Validated.
Length = 204
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 76 PHNYSDQDAAISKQLIHYIANFARK 100
HN+S+++ I K++IH A+F K
Sbjct: 24 EHNFSEEELKIVKRVIHTTADFEYK 48
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 28.6 bits (64), Expect = 2.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 11 RENLHAFGGDPDRITLMGHGTGASLANILAVSP 43
RE L G DP+ +TL +A LA P
Sbjct: 244 REVLAEAGFDPNLVTLAADTPEEPIAQTLATRP 276
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 28.3 bits (63), Expect = 3.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 2 DIVAALHWLRENLHAFGGDPDRITLMGHGTGASLANILA 40
D++AA+ L + DP+RI + G G + + A
Sbjct: 456 DLIAAVDALVKLPLV---DPERIGITGGSYGGYMTLLAA 491
>gnl|CDD|215309 PLN02571, PLN02571, triacylglycerol lipase.
Length = 413
Score = 27.9 bits (62), Expect = 3.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 24 ITLMGHGTGASLANILAVSPVAKG 47
IT+ GH GA+LA + AV VA G
Sbjct: 228 ITICGHSLGAALATLNAVDIVANG 251
>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase.
Length = 347
Score = 27.8 bits (62), Expect = 4.1
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 21/61 (34%)
Query: 22 DRITLMGHGT-GASLANILA------------VS-----PVAKGKCYRTGSVRGEDVPYV 63
D++ + H T G +LANIL V+ P AKG +G+V EDV Y+
Sbjct: 242 DKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGA---SGNVATEDVVYM 298
Query: 64 L 64
L
Sbjct: 299 L 299
>gnl|CDD|225654 COG3112, COG3112, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 121
Score = 26.7 bits (59), Expect = 5.0
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 146 GHKMSLWLNLIPQLHRPGVEDLSMRHHNFLEDGVQYYDASS 186
GH+ +LW++ + R L+ LE+ YYD S
Sbjct: 60 GHEYTLWMDGEEVMVR--ANQLAFEGDEELEEDFNYYDEES 98
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 27.5 bits (62), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 13 NLHA---FGGDPDRITLMGHGTGASLANIL 39
LHA F D +++ HG GAS+ N L
Sbjct: 63 VLHAGGKFDDDAYKVSGGLHGVGASVVNAL 92
>gnl|CDD|177659 PLN00021, PLN00021, chlorophyllase.
Length = 313
Score = 27.3 bits (61), Expect = 5.8
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 2 DIVAALHWLRENLHAF-----GGDPDRITLMGHGTGASLANILA 40
D A ++WL L A D ++ L GH G A LA
Sbjct: 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALA 144
>gnl|CDD|233304 TIGR01180, aman2_put, alpha-1,2-mannosidase, putative. The
identification of members of this family as putative
alpha-1,2-mannosidases is based on an unpublished
characterization of the aman2 gene in Bacillus sp. M-90
by Maruyama,Y., Nakajima,M. and Nakajima,T. (Genbank
accession BAA76709, pid g4587313). Most members of this
family appear to have signal sequences. Members from the
dental pathogen Porphyromonas gingivalis have been
described as immunoreactive with periodontitis patient
serum [Cell envelope, Biosynthesis and degradation of
surface polysaccharides and lipopolysaccharides].
Length = 750
Score = 27.2 bits (60), Expect = 6.6
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 90 LIHYI----ANFARKGDPNGPTPPASLDPNHQV-PFWDTYDSINQLYLELGSKTE--IRN 142
L AN NG P L + WDTY +++ LY L + + + N
Sbjct: 324 LRFPEEDSDANGVYYSPDNGEHLPGYLYDTYTWDSLWDTYRAVHPLYPLLNPEIQEDMVN 383
Query: 143 HYRGHKMSLWLNLIPQLHRPGVEDLSM 169
Y +M + +P HR E +M
Sbjct: 384 SYI--EMGFFSGWLPPWHRDCGETGNM 408
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 27.2 bits (60), Expect = 7.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 11 RENLHAFGGDPDRITLMGHGTGASLANILAVSPVAKGKCYRTGSVRGE 58
RE L G DP+ +TL G A LA P + + + G+
Sbjct: 244 REVLGEAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTGSNAFGQ 291
>gnl|CDD|235372 PRK05248, PRK05248, hypothetical protein; Provisional.
Length = 121
Score = 26.0 bits (58), Expect = 7.8
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 20/66 (30%)
Query: 132 LELGSKTEIRNHYRGHKMSLWLNLIPQLHRPGVED--------LSMRHHNFLEDGVQYYD 183
GS+ E + GH+ +LWL+ + L + LE+G+ YYD
Sbjct: 48 AVKGSEREWQLA--GHEYTLWLD----------GEEVMVRANQLDFEEEDELEEGMSYYD 95
Query: 184 ASSSSS 189
S +
Sbjct: 96 EESLAF 101
>gnl|CDD|131749 TIGR02702, SufR_cyano, iron-sulfur cluster biosynthesis
transcriptional regulator SufR. All members of this
cyanobacterial protein family are the transcriptional
regulator SufR and regulate the SUF system, which makes
possible iron-sulfur cluster biosynthesis despite
exposure to oxygen. In all cases, the sufR gene is
encoded near SUF system genes but in the opposite
direction. This DNA-binding protein belongs to the the
DeoR family of helix-loop-helix proteins. All members
also have a probable metal-binding motif
C-X(12)-C-X(13)-C-X(14)-C near the C-terminus
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Regulatory functions, DNA
interactions].
Length = 203
Score = 26.3 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 28 GHGTGASLANILAVSPVA 45
G T A+LA LA+SP A
Sbjct: 14 GQATAAALAEALAISPQA 31
>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 272 to 336 amino acids in length.
These proteins are distantly related to alpa/beta
hydrolases so they may act as enzymes.
Length = 294
Score = 26.6 bits (59), Expect = 8.9
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 19/62 (30%)
Query: 23 RITLMGHGTGASLA-NILAVSPVAKGKCYRTGSVRGEDVPYVLGLPLVDGGPFFPHNYSD 81
I L+GHGTGA A LA P P L L+ + P + +
Sbjct: 178 NIVLLGHGTGAGWAIRYLAEKP----------------SPAPDALVLIS--AYSPQSDLN 219
Query: 82 QD 83
+
Sbjct: 220 KA 221
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 26.6 bits (58), Expect = 9.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 80 SDQDAAISKQLIHYIANFARKGDPNGPTPPASLDPNHQVPFWDTYD 125
+D+ AA++ +L A D TPPA L PN + DTYD
Sbjct: 588 TDRIAAMATELRKVGATVEEGADYLVVTPPAQLTPNASI---DTYD 630
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.435
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,227,052
Number of extensions: 951206
Number of successful extensions: 899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 40
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)