BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3088
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 1 IASQYHPDKN--PGGRDIFVRANKAYDFLCSRTCWQNND 37
+A ++HPDKN PG D F++ +KAY+ L + N D
Sbjct: 41 LAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1 IASQYHPDKNPGGRDIFVRANKAYDFLCSRTCWQ 34
+A ++HPDKNP G + F + ++AY+ L Q
Sbjct: 32 MALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 IASQYHPDKNPGGRDIFVRANKAYDFLC 28
+A +YHPDKNP + F + ++AY+ L
Sbjct: 30 LALKYHPDKNPNEGEKFKQISQAYEVLS 57
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 20/61 (32%)
Query: 2 ASQYHPDKN--PGGRDIFVRANKAYDFLCSRTCWQNNDPNPNNIVLVLRTQSILFHRYSE 59
A +YHPDKN PG + F +AYD L +DP I F RY E
Sbjct: 28 ALRYHPDKNKEPGAEEKFKEIAEAYDVL--------SDPRKREI----------FDRYGE 69
Query: 60 E 60
E
Sbjct: 70 E 70
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 46 VLRTQ-SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFGG 90
VL+ Q S+L ++Y+E L G +Y G + + + D +ALFG
Sbjct: 61 VLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA 106
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 51 SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFGGS 91
S+L ++Y+E G +Y G ++I + + + +ALFG +
Sbjct: 45 SVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA 85
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A + HPDKNP + F++ N+AY+ L
Sbjct: 45 LALKLHPDKNPNNPNAHGDFLKINRAYEVL 74
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 1 IASQYHPDKNPG---GRDIFVRANKAYDFLCSRT 31
+A +YHPDKNP D F N A+ L T
Sbjct: 41 LALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A + HPDKNP + F++ N+AY+ L
Sbjct: 26 LALKLHPDKNPNNPNAHGDFLKINRAYEVL 55
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 51 SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFGGSTEH 94
S+L ++Y+E G +Y G + + + D +ALFG EH
Sbjct: 48 SVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGA--EH 89
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 5 YHPDKNPGGRDI---FVRANKAYDFLCSRTCWQNND 37
YHPD+N G + F R ++AY L S T + D
Sbjct: 45 YHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFLCSRTCWQNNDPNPNNI 43
A +YHPDK G + F ++A++ L NDP I
Sbjct: 33 ALKYHPDKPTGDTEKFKEISEAFEIL--------NDPQKREI 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFLC 28
+A +YHPD+N G ++ F +AY+ L
Sbjct: 27 LAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 2 ASQYHPDKNPGGRDI----FVRANKAYDFLCSR 30
A Q+HPDKNP ++ F +AY+ L +
Sbjct: 27 ALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDK 59
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External
Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External
Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine
External Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 51 SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFGGSTEH 94
S+L ++Y+E G +YAG + + + + + LFG EH
Sbjct: 45 SVLTNKYAEGYPGRRYAGGCEYVDIVEELARERAKQLFGA--EH 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,937,244
Number of Sequences: 62578
Number of extensions: 142175
Number of successful extensions: 255
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 17
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)