RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3088
(125 letters)
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 36.1 bits (84), Expect = 3e-04
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 2 ASQYHPDKNPGGR----DIFVRANKAYDFLC 28
A +YHPDKNPG + + F N+AY+ L
Sbjct: 26 ALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 35.6 bits (83), Expect = 5e-04
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 2 ASQYHPDKNPGGRDI---FVRANKAYDFLC 28
A +YHPDKNPG F N+AY+ L
Sbjct: 25 ALKYHPDKNPGDPAAEEKFKEINEAYEVLS 54
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 37.5 bits (87), Expect = 8e-04
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 2 ASQYHPDKNPGGRDI---FVRANKAYDFL 27
A QYHPDKNPG ++ F A +AYD L
Sbjct: 30 AIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 37.1 bits (86), Expect = 0.001
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 1 IASQYHPDKNPGGR---DIFVRANKAYDFLCSR 30
+A +YHPD+NPG + ++F A +AY+ L
Sbjct: 28 LAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 2 ASQYHPDKNPG---GRDIFVRANKAYDFLC 28
A +YHPDKNP + F N+AY+ L
Sbjct: 25 ALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPDKNP ++ F N+AY+ L
Sbjct: 27 LALKYHPDKNPDNKEAEEHFKEVNEAYEVL 56
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 34.1 bits (79), Expect = 0.009
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 2 ASQYHPDKNPGGRD---IFVRANKAYDFL 27
A +YHPD+NPG ++ F N+AY+ L
Sbjct: 29 AKKYHPDRNPGDKEAEEKFKEINEAYEVL 57
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 34.0 bits (79), Expect = 0.010
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 2 ASQYHPDKNPGGRDI---FVRANKAYDFL 27
A +YHPD+NPG ++ F +AY+ L
Sbjct: 29 AMKYHPDRNPGDKEAEEKFKEIKEAYEVL 57
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 34.2 bits (79), Expect = 0.011
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 IASQYHPD--KNPGGRDIFVRANKAYDFL 27
+A +YHPD K PG D F N+AY+ L
Sbjct: 27 LARKYHPDVNKEPGAEDRFKEINRAYEVL 55
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 33.3 bits (77), Expect = 0.018
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 2 ASQYHPDKN--PGGRDIFVRANKAYDFL 27
A +YHPD+N + F N+AY+ L
Sbjct: 25 AKKYHPDRNKDKEAEEKFKEINEAYEVL 52
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 32.9 bits (75), Expect = 0.031
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPD NPG ++ F N+AY+ L
Sbjct: 29 LAKKYHPDLNPGDKEAEQKFKEINEAYEIL 58
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 32.0 bits (73), Expect = 0.048
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPG---GRDIFVRANKAYDFL 27
+A QYHPD+NP F A +AY+ L
Sbjct: 28 LALQYHPDRNPDNPEAEQKFKEAAEAYEVL 57
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 31.7 bits (72), Expect = 0.077
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPDKN G ++ F N+AY L
Sbjct: 28 LAIKYHPDKNKGNKEAEEKFKEINEAYQVL 57
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 31.1 bits (70), Expect = 0.11
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRD---IFVRANKAYDFL 27
IA +YHPDKN G ++ IF A +AY+ L
Sbjct: 27 IAIKYHPDKNKGNKEAESIFKEATEAYEVL 56
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 31.0 bits (70), Expect = 0.12
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPDKNPG + F ++AY+ L
Sbjct: 25 LAVKYHPDKNPGDAEAEKRFKEVSEAYEVL 54
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 30.7 bits (69), Expect = 0.14
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 IASQYHPD--KNPGGRDIFVRANKAYDFL 27
+A QYHPD K+P D V N+A D L
Sbjct: 28 LAKQYHPDLNKSPDAHDKMVEINEAADVL 56
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 30.7 bits (69), Expect = 0.16
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 IASQYHPD--KNPGGRDIFVRANKAYDFL 27
+A +YHPD K+PG + F N+AY L
Sbjct: 28 LARKYHPDVNKSPGAEEKFKEINEAYTVL 56
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 30.6 bits (68), Expect = 0.18
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKN--PGGRDIFVRANKAYDFL 27
+A +YHPD+N P IF N+A D L
Sbjct: 26 LAKKYHPDRNKAPDAASIFAEINEANDVL 54
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 29.7 bits (67), Expect = 0.30
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 IASQYHPD--KNPGGRDIFVRANKAYDFL 27
+A +YHPD KNP + F N+AY L
Sbjct: 27 LARKYHPDFNKNPEAEEKFKEINEAYQVL 55
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 29.4 bits (66), Expect = 0.40
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKN--PGGRDIFVRANKAYDFL 27
+A +YHPDKN P + F ++AY L
Sbjct: 29 LAMKYHPDKNKEPDAEEKFKEISEAYAVL 57
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 29.5 bits (66), Expect = 0.43
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKNP--GGRDIFVRANKAYDFL 27
+A +YHPD+N G + F + N+AY L
Sbjct: 26 LALKYHPDRNKEKGAAEKFAQINEAYAVL 54
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 29.0 bits (64), Expect = 0.53
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 1 IASQYHPDKNPG----GRDIFVRANKAYDFL 27
+A +YHPD+NPG + F N+AY+ L
Sbjct: 30 LALKYHPDRNPGDPKVAEEKFKEINEAYEIL 60
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 28.8 bits (64), Expect = 0.65
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPDKN G ++ F A +AY+ L
Sbjct: 28 LAIKYHPDKNKGNKESEEKFKEATEAYEIL 57
>gnl|CDD|225500 COG2949, SanA, Uncharacterized membrane protein [Function unknown].
Length = 235
Score = 28.9 bits (65), Expect = 0.66
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 66 YAGYRQLITTIRA-ETSDENEALFGGSTEHDSLLQAAVELA-YHTVQCSALNAQELNNEG 123
YAG+R L + +RA + N+ H + A+ +A + A +
Sbjct: 132 YAGFRTLDSVVRARKVFGTNDFTIITQRFH---CERALFIARQMGIDAICFAAPDPEGRS 188
Query: 124 GF 125
G
Sbjct: 189 GL 190
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKN--PGGRDIFVRANKAYDFL 27
++ +YHPD N PG + + +AY+ L
Sbjct: 28 LSKKYHPDINKEPGAEEKYKEVQEAYETL 56
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPG---GRDIFVRANKAYDFL 27
+A + HPD NPG + F ++A+D L
Sbjct: 33 LARELHPDANPGDPAAEERFKAVSEAHDVL 62
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 27.1 bits (60), Expect = 2.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKN---PGGRDIFVRANKAYDFL 27
+A +YHPD N + F ++AYD L
Sbjct: 33 LAREYHPDANKGDAKAEERFKEISEAYDVL 62
>gnl|CDD|226433 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 27.2 bits (60), Expect = 2.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 31 TCWQNNDPNPNNIVLVLRTQSILFHRYSEELSGYKYAGYRQ 71
+ +NDP+P I L +LFHR +K G+++
Sbjct: 362 ALFYSNDPSPGLIDKPLTAMRVLFHRILGAFKTWKCYGHKR 402
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 26.6 bits (59), Expect = 4.6
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 1 IASQYHPDKNP--GGRDIFVRANKAYDFLCSRTCWQNNDPNPNNIV 44
+A + HPD NP ++ F + AY+ L +DP IV
Sbjct: 27 LARELHPDVNPDEEAQEKFKEISVAYEVL--------SDPEKRRIV 64
>gnl|CDD|216222 pfam00972, Flavi_NS5, Flavivirus RNA-directed RNA polymerase.
Flaviviruses produce a polyprotein from the ssRNA
genome. This protein is also known as NS5. This
RNA-directed RNA polymerase possesses a number of short
regions and motifs homologous to other RNA-directed RNA
polymerases.
Length = 649
Score = 26.3 bits (58), Expect = 5.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 67 AGYRQLITTIRAETSDENEALFGGSTEHDSLLQAAVELAYH 107
AG+ IT + DE L EH L A +EL Y
Sbjct: 286 AGWDTRIT--EEDLEDEEAILEYMDPEHKQLAAAIMELTYQ 324
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 26.0 bits (57), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 55 HRYSEELSGYKYAGYRQLITTIRAETSD 82
HRY +ELSG G +Q + RA ++
Sbjct: 124 HRYPDELSG----GMQQRVGLARALAAE 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,214,817
Number of extensions: 529818
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 38
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)