RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3088
(125 letters)
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 39.6 bits (93), Expect = 2e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFL 27
A +YHPDK G + F ++A++ L
Sbjct: 33 ALKYHPDKPTGDTEKFKEISEAFEIL 58
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 38.4 bits (90), Expect = 3e-05
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 1 IASQYHPDKNPGGRDIFVRANKAYDFL 27
+A ++HPDKNP G + F + ++AY+ L
Sbjct: 32 MALKFHPDKNPDGAEQFKQISQAYEVL 58
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 36.2 bits (84), Expect = 5e-04
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGR---DIFVRANKAYDFL 27
+A +YHPDKNP D F N A+ L
Sbjct: 41 LALKYHPDKNPDNPEAADKFKEINNAHAIL 70
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 36.3 bits (84), Expect = 5e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFLC 28
A + HPDK+P F + KA + L
Sbjct: 44 RALECHPDKHPENPKAVETFQKLQKAKEILT 74
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 35.5 bits (82), Expect = 7e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
YHPD+N G + F R ++AY L
Sbjct: 41 QCFLYHPDRNSGSAEAAERFTRISQAYVVL 70
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 36.8 bits (85), Expect = 7e-04
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPG---GRDIFVRANKAYDFL 27
+A + HPDKNP F++ N+AY+ L
Sbjct: 26 LALKLHPDKNPNNPNAHGDFLKINRAYEVL 55
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 35.3 bits (82), Expect = 9e-04
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPD+N G ++ F +AY+ L
Sbjct: 27 LAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 2 ASQYHPDKN--PGGRDIFVRANKAYDFL 27
A HPDK PG D F A L
Sbjct: 52 AVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 34.5 bits (80), Expect = 0.001
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 1 IASQYHPDKNPGGRDI---FVRANKAYDFL 27
+A +YHPD N F + +AY+ L
Sbjct: 31 LAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 35.0 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 1 IASQYHPDKNPGGRDI----FVRANKAYDFL 27
A Q+HPDKNP ++ F +AY+ L
Sbjct: 26 KALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 1 IASQYHPDKNPGGR----DIFVRANKAYDFL 27
+A ++HPDKNP + F + +AY+ L
Sbjct: 33 LALKWHPDKNPENKEEAERRFKQVAEAYEVL 63
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 1 IASQYHPDKNPGGRDI----FVRANKAYDFL 27
+A ++HPDKNP ++ F ++AY+ L
Sbjct: 33 LALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 34.3 bits (79), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 2 ASQYHPDKNPGGRDI----FVRANKAYDFL 27
++HPDKNP DI F + L
Sbjct: 41 YLKWHPDKNPENHDIANEVFKHLQNEINRL 70
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 35.0 bits (80), Expect = 0.003
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFL 27
+Q+HPD G + N+AY L
Sbjct: 43 QAQHHPDMAQQGSEQSSTLNQAYHTL 68
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 33.5 bits (77), Expect = 0.003
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 2 ASQYHPDKN--PGGRDIFVRANKAYDFL 27
A ++HPDKN PG D F++ +KAY+ L
Sbjct: 42 AREWHPDKNKDPGAEDRFIQISKAYEIL 69
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 32.9 bits (76), Expect = 0.004
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 2 ASQYHPDKNP--GGRDIFVRANKAYDFL 27
A +YHPDKN G + F +AYD L
Sbjct: 28 ALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 33.5 bits (77), Expect = 0.004
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 2 ASQYHPDKNPGGRDI------FVRANKAYDFL 27
A ++HPD+ + F AY+ L
Sbjct: 41 ARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 32.6 bits (75), Expect = 0.005
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKNP--GGRDIFVRANKAYDFL 27
+A ++HPDKN G + F AY L
Sbjct: 31 LALKFHPDKNHAPGATEAFKAIGTAYAVL 59
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 32.7 bits (75), Expect = 0.007
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 1 IASQYHPDKNP--GGRDIFVRANKAYDFL 27
+A +YHPDKN F +AY+ L
Sbjct: 31 LAMKYHPDKNKSPDAEAKFREIAEAYETL 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.007
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 59/155 (38%)
Query: 3 SQ--------YHPDKNPGGRDIFVRANK----AYDFLCS-RTCWQNNDPNPNNIVLVLRT 49
SQ Y + +D++ RA+ Y F S NN P N+
Sbjct: 1626 SQEQGMGMDLY--KTSKAAQDVWNRADNHFKDTYGF--SILDIVINN---PVNLT----- 1673
Query: 50 QSILFHRYSEELSGYK----YAGYRQLITTIRAETSDENEALFGGSTEH---------DS 96
I F G K Y +I + + E +F EH
Sbjct: 1674 --IHF-------GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 97 LL------QAAVELAYHTVQCSALNAQELNNEGGF 125
LL Q A L ++ +A ++L ++G
Sbjct: 1725 LLSATQFTQPA--LT--LMEKAAF--EDLKSKGLI 1753
Score = 26.6 bits (58), Expect = 3.3
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 37/102 (36%)
Query: 39 N-PNNIVLVLRTQSILFHRYSEELSGYKYAGYRQLITTIR---AETS-DENEALFG---- 89
N N+V+ SG + Y L T+R A + D++ F
Sbjct: 372 NGAKNLVV----------------SGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 90 -GSTE--------HDSLLQAAVELAYHTVQCS--ALNAQELN 120
S H LL A +L + + + NA+++
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 32.4 bits (74), Expect = 0.008
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 9/36 (25%)
Query: 1 IASQYHPDKNPGGRDI---------FVRANKAYDFL 27
+ YHPDK F+ ++A+ L
Sbjct: 40 LILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 33.6 bits (76), Expect = 0.010
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 1 IASQYHPDKNPGGR---DIFVRANKAYDFLC 28
+A + HPDKNP F++ N+AY+ L
Sbjct: 45 LALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 31.6 bits (72), Expect = 0.011
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 IASQYHPDKNPGGRDIFVRANKAYDFLCSR 30
I HPDK G + + N+A DFL R
Sbjct: 39 IMLANHPDKG-GSPFLATKINEAKDFLEKR 67
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 32.9 bits (75), Expect = 0.011
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 2 ASQYHPDKNPGGRDI---------FVRANKAYDFL 27
YHPDK F+ ++A+ L
Sbjct: 35 ILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.013
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 8 DKNPGGRDIFVRA--NKAYDFLCSRTCWQNNDPNPNNIVLVLRTQSILFHRYSEELSGYK 65
K FV Y FL S + P+ + + Q + ++ + K
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFA--K 128
Query: 66 YAGYR-QLITTIRAE----TSDENEALFG--GSTEHDSLLQAAVELAYHTVQC 111
Y R Q +R +N + G GS + + + V + VQC
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDV-CLSYKVQC 178
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 32.6 bits (74), Expect = 0.015
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFL 27
++HPDK G + + N Y +
Sbjct: 38 CKEFHPDKG-GDEEKMKKMNTLYKKM 62
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 31.4 bits (72), Expect = 0.044
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 2 ASQYHPDKNPGGR--DIFVRANKAYDFL 27
A +YHPD + F +A++ L
Sbjct: 53 ARKYHPDVSKENDAEAKFKDLAEAWEVL 80
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 30.9 bits (70), Expect = 0.045
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFL 27
++HPDK G + + N Y +
Sbjct: 35 CKEFHPDKG-GDEEKMKKMNTLYKKM 59
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 30.2 bits (67), Expect = 0.12
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 2 ASQYHPDKNPGGRD------IFVRANKAYDFL 27
HPDK G IF+ N A+
Sbjct: 142 VLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 173
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 28.4 bits (63), Expect = 0.25
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 2 ASQYHPDKNPGGRDIFVRANKAYDFL 27
+ HPDK G + N +
Sbjct: 38 SLLLHPDKG-GSHALMQELNSLWGTF 62
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 28.4 bits (63), Expect = 0.29
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 2 ASQYHPDKNPGG------RDIFVRANKAYD 25
HP K G + IF+ N A+
Sbjct: 58 VLVVHPCKATGQPYEQYAKMIFMELNDAWS 87
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 28.8 bits (64), Expect = 0.37
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 2 ASQYHPDKNPGGRDI--------FVRANKAYDFL 27
QYHPDK G N+A+ L
Sbjct: 28 QRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 28.4 bits (63), Expect = 0.44
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 8/34 (23%)
Query: 2 ASQYHPDKNPGGRD--------IFVRANKAYDFL 27
++HPD + + N AY L
Sbjct: 31 QKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus,
phosphoprotein, UBL conjugation pathway, WD repeat,
nuclear protein; 1.60A {Saccharomyces cerevisiae}
Length = 253
Score = 28.1 bits (62), Expect = 0.68
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 16 IFVRANKAYDFLCSRTCWQNNDPNPNNIVLVLRTQSILFHRYSEELSGYKYAGYRQLITT 75
+ V+ + + N +L +R F + E G K Q+ +
Sbjct: 80 LIVKKLPYSSDIKDYIEEGLGNKNITLTMLTVRILVNCF---NNENWGVKLLESNQVYKS 136
Query: 76 IRAETSDENEALFGGSTEHDSLLQAAVELAYHTV 109
I E + ++ + + +A T+
Sbjct: 137 IF-------ETIDTEFSQASAKQSQNLAIAVSTL 163
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination;
1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Length = 179
Score = 27.8 bits (62), Expect = 0.71
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 80 TSDENEALFGGSTEHDSLLQAAVELAYHT 108
T+DE ++ + L+ A+ELA T
Sbjct: 5 TADEYLKIYQAAESSPCWLRLAMELAVVT 33
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 2.80A {Enterobacteria phage lambda} PDB:
1p7d_A*
Length = 283
Score = 27.4 bits (61), Expect = 1.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 80 TSDENEALFGGSTEHDSLLQAAVELAYHT 108
T+DE ++ + L+ A+ELA T
Sbjct: 108 TADEYLKIYQAAESSPCWLRLAMELAVVT 136
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN
auxilin-like J-domain containing protein, JAC1,
chloroplast accumulation response; 1.80A {Arabidopsis
thaliana}
Length = 106
Score = 25.7 bits (56), Expect = 2.7
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 10/34 (29%)
Query: 2 ASQYHPDKNPGG----------RDIFVRANKAYD 25
HPDK +F +A+D
Sbjct: 65 LLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 89 GGSTEHDSLLQAAVELAYHTVQCSALNAQ 117
G L +AA EL HT+ + NA
Sbjct: 14 GAGRGQLGLYKAAKELGIHTIAGTMPNAH 42
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
genomics consortium, SGC, WD repeat, acetylation,
ATP-binding; 1.90A {Homo sapiens}
Length = 304
Score = 26.2 bits (57), Expect = 3.1
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 10 NPGGRDIFVRANKAYDFLCSRTCWQNNDPNPNNIVLVLRTQSILFHRYSEELSGYKYAGY 69
+P + F + F N P N +L LRT F + +
Sbjct: 132 HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV--GQAGQKLMMSQR 189
Query: 70 RQLITTIRAETSDENEAL 87
L++ S N+ +
Sbjct: 190 ESLMSHAIELKSGSNKNI 207
>3tai_A DNA double-strand break repair protein NURA; recombination,
hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB:
3tal_A* 3taz_A*
Length = 471
Score = 26.1 bits (56), Expect = 3.6
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 53 LFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFGGSTEHDSLLQAAVELAY 106
L L G++ GY ++ + + L + L+ + LAY
Sbjct: 337 LLDAVIRTLIGHEKEGYLEIEHAVVPPKWSFPDFLLSKFRNIEKLIDKGIHLAY 390
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.2
Identities = 4/17 (23%), Positives = 7/17 (41%), Gaps = 3/17 (17%)
Query: 5 YHPDKNPGGRDIFVRAN 21
Y D P + ++A
Sbjct: 32 YADDSAPA---LAIKAT 45
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex;
HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP:
d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Length = 356
Score = 25.6 bits (56), Expect = 4.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 80 TSDENEALFGGSTEHDSLLQAAVELAYHTVQ 110
T+DE ++ + L+ A+ELA T Q
Sbjct: 181 TADEYLKIYQAAESSPCWLRLAMELAVVTGQ 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,876,402
Number of extensions: 98544
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 46
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)