RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3088
         (125 letters)



>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal
          subdomain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 114

 Score = 25.5 bits (56), Expect = 1.2
 Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 37 DPNPNNIVL--VLRTQS 51
          DPNP N V   ++ T++
Sbjct: 57 DPNPANFVGAGIIHTKT 73


>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 517

 Score = 26.1 bits (56), Expect = 1.5
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 25  DFLCSRTCWQNNDPNPNNIVLVLRTQSILFHRYSEELSGYKYAGYRQLITTIRAETSDE 83
            F  +R  W  +   P + +      + +    S   + YK   + +LI        D 
Sbjct: 408 TFDVARAGWCADYNEPTSFL------NTMLSDSSNNTAHYKSPAFDKLIADTLKVADDT 460


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 98

 Score = 24.9 bits (54), Expect = 1.6
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 6/32 (18%)

Query: 2  ASQYHPDKNPG------GRDIFVRANKAYDFL 27
              HPDK  G       + IF+  N A+   
Sbjct: 58 VLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89


>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase
          {Escherichia coli [TaxId: 562]}
          Length = 416

 Score = 24.9 bits (54), Expect = 3.4
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 42 NIV--LVLRTQ-SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFG 89
          N     V++ Q S L ++Y+E   G +Y G  + +  +     D  + LFG
Sbjct: 36 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG 86


>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 405

 Score = 24.6 bits (53), Expect = 4.1
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 42 NIV--LVLRTQ-SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFG 89
          N V   V+  Q S+L ++Y+E   G +Y G  + +  +     +  + LFG
Sbjct: 33 NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG 83


>d1j1qa_ d.165.1.1 (A:) Antiviral protein S {Pokeweed (Phytolacca
          americana) [TaxId: 3527]}
          Length = 261

 Score = 24.6 bits (53), Expect = 4.1
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 61 LSGYKYAGYRQLITTIRAETSDENEALFG 89
                  Y   + ++R E  D +   +G
Sbjct: 8  AGNATINKYATFMESLRNEAKDPSLKCYG 36


>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
          (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 470

 Score = 24.3 bits (52), Expect = 5.3
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 42 NIV--LVLRTQ-SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFG 89
          N     VL    S L ++YS    G +Y G  + I  +           +G
Sbjct: 41 NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG 91


>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase
          {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 463

 Score = 24.3 bits (52), Expect = 6.4
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 42 NIV--LVLRTQ-SILFHRYSEELSGYKYAGYRQLITTIRAETSDENEALFG 89
          N      L    S L ++YSE   G +Y G  +++  I           F 
Sbjct: 37 NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD 87


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 22.7 bits (48), Expect = 9.4
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 8/35 (22%)

Query: 1  IASQYHPDKNPGGRD--------IFVRANKAYDFL 27
          +  QYHPDK   G               N+A+  L
Sbjct: 27 LQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,146
Number of extensions: 18114
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 12
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)