BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3090
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + + TW +GN+
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP--FGAAHILTKTWTFGNFW 254
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 314
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYIL 263
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 315 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVYSR 370
Query: 264 IAHALLS--SKSMKHKGRLIHSNVTMVSVTHR--HTKNNSSR 301
+ K K +GR N++ V R H SS+
Sbjct: 371 VFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 412
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 17/222 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 49 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 106
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 107 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 166
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYIL 263
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 167 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVYSR 222
Query: 264 IAHALLS--SKSMKHKGRLIHSNVTMVSVTHR--HTKNNSSR 301
+ K K +GR N++ V R H SS+
Sbjct: 223 VFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 264
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + TW +GN+
Sbjct: 20 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK--TWTFGNFW 77
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 78 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 137
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 138 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVY 191
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 103/200 (51%), Gaps = 20/200 (10%)
Query: 90 GLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNE----LVSYYQEKYTWL 145
GLLGN +V+ V+ + M+T TN Y+ +L++AD +VL+ +P + L+ + W
Sbjct: 139 GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGF------WP 191
Query: 146 WGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIF 205
+GN CK + + Y + S+ L A +V+RY+AIC P+ A + T ++A+ + + +W
Sbjct: 192 FGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWAL 251
Query: 206 AVIYSSPWLFLTETRQIDPFRETC--DFKLPRSYY------LVYFFTDIIVFYVIPLALS 257
A + P + + + Q++ C + P+ Y+ ++ F+ I+ VI + S
Sbjct: 252 ASVVGVP-VAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 258 CLLYILIAHALLSSKSMKHK 277
++ L LLS K +
Sbjct: 311 LMIRRLRGVRLLSGSREKDR 330
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 17/222 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 48 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 105
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 106 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 165
Query: 211 -----SPWLFLTETRQIDPF-RET-CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYIL 263
W T I+ + ET CDF ++Y + + I+ FYV PL + +Y
Sbjct: 166 FLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVYSR 221
Query: 264 IAHALLS--SKSMKHKGRLIHSNVTMVSVTHR--HTKNNSSR 301
+ K K +GR N++ V R H SS+
Sbjct: 222 VFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 263
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 17/222 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 25 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 82
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 83 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 142
Query: 211 -----SPWLFLTETRQIDPF-RET-CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYIL 263
W T I+ + ET CDF ++Y + + I+ FYV PL + +Y
Sbjct: 143 FLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVYSR 198
Query: 264 IAHALLS--SKSMKHKGRLIHSNVTMVSVTHR--HTKNNSSR 301
+ K K +GR N++ V R H SS+
Sbjct: 199 VFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSK 240
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 113
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 114 CEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 174 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVY 227
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 112
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 113 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 173 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVY 226
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK--MWTFGNFW 113
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 114 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 173
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 174 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVY 227
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
+ GN++V++ + K ++T TN ++ SL+ ADL++ +A VP + W +GN+
Sbjct: 24 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMK--MWTFGNFW 81
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
C+ + L + AS L V+RY AI P + T N+AR I++ VWI + + S
Sbjct: 82 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 141
Query: 211 -----SPWLFLTETRQIDPFRET--CDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
W T I+ + E CDF ++Y + + I+ FYV PL + +Y
Sbjct: 142 FLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIA---SSIVSFYV-PLVIMVFVY 195
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 21/263 (7%)
Query: 69 EMFSLEYRXXXXXXXXXXXXVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIA 128
E+ S ++ + + GN++V++ + + ++T TN ++ SL+ ADL+V +
Sbjct: 4 ELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL 63
Query: 129 AVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHR 188
VP + + TWLWG++ C++ L L + AS L ++RY+AI P
Sbjct: 64 VVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
Query: 189 ICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFR-------ETCDFKLPRSYYLVY 241
+ T RA+ I+ VW + + S + + R DP CDF R+Y +
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIA- 180
Query: 242 FFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIH--SNVTMVSVTHRHTKNNS 299
+ II FY IP L I+I AL + K + R I S V + H +
Sbjct: 181 --SSIISFY-IP------LLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKT 231
Query: 300 SRAQVSVPCLVHFPFVLHYLVHL 322
+ V L PF L +V++
Sbjct: 232 LGIIMGVFTLCWLPFFLVNIVNV 254
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 29/240 (12%)
Query: 69 EMFSLEYRXXXXXXXXXXXXVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIA 128
E+ S ++ + + GN++V++ + + ++T TN ++ SL+ ADL+V +
Sbjct: 4 ELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL 63
Query: 129 AVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHR 188
VP + + TWLWG++ C++ L L + AS L ++RY+AI P
Sbjct: 64 VVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
Query: 189 ICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFR-------ETCDFKLPRSYYLVY 241
+ T RA+ I+ VW + + S + + R DP CDF R+Y +
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIA- 180
Query: 242 FFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSR 301
+ II FY IP L I+I AL + K + R I R +K +SR
Sbjct: 181 --SSIISFY-IP------LLIMIFVALRVYREAKEQIRKI----------DRASKRKTSR 221
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 7/189 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
VGLLGN++V+ + + ++T TN Y+ +L++AD + + +P + Y E TW +G
Sbjct: 27 VGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALA-TSTLPFQSAKYLME--TWPFGE 83
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
CK + + Y + S L +V+RYIA+C P+ A T +A+ I I +W+ A
Sbjct: 84 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASG 143
Query: 209 YSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVF---YVIPLALSCLLYILIA 265
P + + T+ D C + P + T I VF +V+P+ + + Y L+
Sbjct: 144 VGVPIMVMAVTQPRDG-AVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLML 202
Query: 266 HALLSSKSM 274
L S +++
Sbjct: 203 LRLRSVRNI 211
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
VGL GN +V+ V+ + M+T TN Y+ +L++AD + + +P + V+Y TW +GN
Sbjct: 30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPFQSVNYLMG--TWPFGN 86
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
CK+ + + Y + S L +V+RYIA+C P+ A T A+ + + WI +
Sbjct: 87 ILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSA 146
Query: 209 YSSPWLFLTETR 220
P +F+ T+
Sbjct: 147 IGLPVMFMATTK 158
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 89 VGLLGNIMVVSVVYKI-RSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWG 147
V ++GNI+V+ V +K+ + ++T N +L+SL+ ADL +I + L + Y W G
Sbjct: 25 VTIIGNILVI-VAFKVNKQLKTVNNYFLLSLACADL--IIGVISMNLFTTYIIMNRWALG 81
Query: 148 NYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAV 207
N C + + + Y+ NAS +NL+ + +RY +I +P+ T RA ++ W+ +
Sbjct: 82 NLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISF 141
Query: 208 IYSSP----WLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLY 261
+ +P W + R + P F S + F T I FY +P+ + +LY
Sbjct: 142 VLWAPAILFWQYFVGKRTVPPGECFIQF---LSEPTITFGTAIAAFY-MPVTIMTILY 195
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 17/203 (8%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
VGL+GN +V+ V+ + M+T TN Y+ +L++AD +V +P + Y +W +G+
Sbjct: 35 VGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALV-TTTMPFQSTVYLMN--SWPFGD 91
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIF--A 206
CK+ + + Y + S L +V+RYIA+C P+ A T +A+ I I +W+ +
Sbjct: 92 VLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSS 151
Query: 207 VIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVY-FFTDIIVF---YVIPLALSCLLYI 262
V S+ L T+ R+ E C + P Y + F I VF +VIP+ + + Y
Sbjct: 152 VGISAIVLGGTKVREDVDVIE-CSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYT 210
Query: 263 LIAHALLSSKSMKHKGRLIHSNV 285
L+ +L KS+ RL+ N+
Sbjct: 211 LM---ILRLKSV----RLLSGNI 226
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 108
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 167
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 168 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 217
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 50 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 107
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 108 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 166
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 216
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 108
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 167
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 168 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 217
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 50 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 107
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 108 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 166
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 216
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 108
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 109 TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 167
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 168 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 217
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+G N + + V + + +RTP N L++L++ADL ++ L Y +++G
Sbjct: 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGP 108
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
GC + F LG + +L+ +ERY+ +CKPM R N A + + W+ A+
Sbjct: 109 TGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE-NHAIMGVAFTWVMALA 167
Query: 209 YSSPWL-----FLTETRQ----ID---PFRETCDFKLPRSYYLVYFFTDIIVFYVIPL 254
++P L ++ E Q ID P ET + +++Y F +V ++IPL
Sbjct: 168 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN-----ESFVIYMF---VVHFIIPL 217
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 15/190 (7%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQ-EKYTWLWGNY 149
+ GN +V V K R+++T TN +VSL++ADL+V +P V Y + W +
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP--WVVYLEVTGGVWNFSRI 110
Query: 150 GCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKI---LIYVWIFA 206
C + V L + AS NL A +++RY A+ P+ + R++ + VW+ A
Sbjct: 111 CCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLA 170
Query: 207 VIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAH 266
S P LF T DP C P +++Y + ++ FY +P ++ L+Y I +
Sbjct: 171 FAVSCPLLFGFNTTG-DP--TVCSISNPD--FVIY--SSVVSFY-LPFGVTVLVYARI-Y 221
Query: 267 ALLSSKSMKH 276
+L + K+
Sbjct: 222 VVLKQRRRKN 231
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 89 VGLLGNIMVVSVVYK---IRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWL 145
VG +GN + + + + ++S+++ + +L SL+++DL++L+ A+P EL ++ + W
Sbjct: 45 VGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWA 104
Query: 146 WGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIF 205
+G+ GC+ FL+ A++LN+ + +V RY+AIC P A + + +R +K + +W+
Sbjct: 105 FGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLA 164
Query: 206 AVIYSSPWLF 215
+ + + P LF
Sbjct: 165 SALLAIPMLF 174
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 10/183 (5%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
V ++GNI+V+ + R ++T N +L SL+ ADL++ + ++ L + Y W G
Sbjct: 36 VTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSM--NLYTLYTVIGYWPLGP 93
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
C + + L Y+ NAS +NL+ + +RY + KP+ T A ++ W+ + I
Sbjct: 94 VVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFI 153
Query: 209 YSSP----WLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILI 264
+P W F+ R ++ F S V F T I FY +P+ + +LY I
Sbjct: 154 LWAPAILFWQFIVGVRTVEDGECYIQF---FSNAAVTFGTAIAAFY-LPVIIMTVLYWHI 209
Query: 265 AHA 267
+ A
Sbjct: 210 SRA 212
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 90 GLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNY 149
G++GN +V+ V+ + +R+ T+ Y + LS+ADL+ +I +P V W +GN+
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVA---NWYFGNF 117
Query: 150 GCKMSVFLQYLGINASSLNLIAF-TVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
CK +V + Y SS+ ++AF +++RY+AI + R L + + + VWI A++
Sbjct: 118 LCK-AVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALL 176
Query: 209 YSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYF-FTDIIVFYVIP--LALSCLLYILIA 265
+ P + D R CD P ++V F F I+V ++P + LSC Y +I
Sbjct: 177 LTIPDFIFANVSEADD-RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSC--YCIII 233
Query: 266 HALLSSKS 273
L S S
Sbjct: 234 SKLSHSGS 241
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 90 GLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNY 149
G++GN +V+ V+ + +R+ T+ Y + LS+ADL+ +I +P V W +GN+
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVA---NWYFGNF 117
Query: 150 GCKMSVFLQYLGINASSLNLIAF-TVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
CK +V + Y SS+ ++AF +++RY+AI + R L + + + VWI A++
Sbjct: 118 LCK-AVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALL 176
Query: 209 YSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYF-FTDIIVFYVIP----LALSCLLYIL 263
+ P + D R CD P ++V F F I+V ++P L+ C++
Sbjct: 177 LTIPDFIFANVSEADD-RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISK 235
Query: 264 IAHALLSSKSMKHKGRL-IHSNVT---MVSVTHRHTKNNSSRAQVS 305
++H + + RL I+ + + + H TK+ S A S
Sbjct: 236 LSHNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS 281
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 90 GLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNY 149
G++GN +V+ V+ + +R+ T+ Y + LS+ADL+ +I +P V W +GN+
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVA---NWYFGNF 117
Query: 150 GCKMSVFLQYLGINASSLNLIAF-TVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
CK +V + Y SS+ ++AF +++RY+AI + R L + + + VWI A++
Sbjct: 118 LCK-AVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALL 176
Query: 209 YSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYF-FTDIIVFYVIP--LALSCLLYILIA 265
+ P + D R CD P ++V F F I+V ++P + LSC Y +I
Sbjct: 177 LTIPDFIFANVSEADD-RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSC--YCIII 233
Query: 266 HALLSSKS 273
L S S
Sbjct: 234 SKLSHSGS 241
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 94 NIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKM 153
NIM + V ++ P Y++ L+ AD++ ++ +P + +SYY W +G+ C+
Sbjct: 38 NIMAIVVFILKMKVKKPAVVYMLHLATADVL-FVSVLPFK-ISYYFSGSDWQFGSELCRF 95
Query: 154 SVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPW 213
Y + AS L + +++R++A+ PM + TL RA + +W A+ P
Sbjct: 96 VTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPL 155
Query: 214 LFLTETRQIDPFR-ETC----DFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHAL 268
L +T Q+ TC L YY YF VF+ +PL +S + Y+ I L
Sbjct: 156 LLKEQTIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCL 215
Query: 269 LSSKSM 274
SS ++
Sbjct: 216 SSSANI 221
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 103 KIRSMRTPTNCYLVSLSIADL-MVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLG 161
K +S++TP N ++++L+ +D L+ P +S + +K W++G CK+ F+ +
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKK--WIFGFAACKVYGFIGGIF 117
Query: 162 INASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
S + + +++RY I +PM A + + RA ++I+VW+++V+++
Sbjct: 118 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 166
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 103 KIRSMRTPTNCYLVSLSIADL-MVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLG 161
K +S++TP N ++++L+ +D L+ P +S + +K W++G CK+ F+ +
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKK--WIFGFAACKVYGFIGGIF 118
Query: 162 INASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210
S + + +++RY I +PM A + + RA ++I+VW+++V+++
Sbjct: 119 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 167
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 105 RSMRTPTNCYLVSLSIADLMVLIAAVPNELVSY-YQEKYTWLWGNYGCKMSVFLQYLGIN 163
+ MRT TN +LV+L+ A+ + A N +V++ Y W +G + CK F +
Sbjct: 61 KRMRTVTNYFLVNLAFAEASM---AAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVF 117
Query: 164 ASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQID 223
AS ++ A +RY+AI P+ T + ++ +W+ A++ + P + + T +
Sbjct: 118 ASIYSMTAVAFDRYMAIIHPLQPRLSATATKV--VICVIWVLALLLAFPQGYYSTTETM- 174
Query: 224 PFRETCDFKLP----RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGR 279
P R C + P + Y VY ++ Y +PL + Y ++ L +S+
Sbjct: 175 PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD 234
Query: 280 LIHSNVT 286
H V+
Sbjct: 235 RYHEQVS 241
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
VGL N++V+ V R + T N Y+VSLS+ADL+V +P ++ K W G
Sbjct: 23 VGL--NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK--WSLGR 78
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVI 208
C + + Y+ AS ++ ++RY ++ +P+ + T RA ++ W + +
Sbjct: 79 PLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFL 138
Query: 209 YSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFF---TDIIVFYVIPLALSCLLYILIA 265
+ P L Q R + K +Y V +F T II FY +P L Y I
Sbjct: 139 WVIPILGWNHFMQQTSVRR--EDKCETDFYDVTWFKVMTAIINFY-LPTLLMLWFYAKIY 195
Query: 266 HAL 268
A+
Sbjct: 196 KAV 198
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+ +LGN++V V+ +++ TN ++VSL+ AD+ V + A+P + +
Sbjct: 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI----STGFCAAC 99
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
+GC + +S +L+A ++RYIAI P+ + + T RA+ I+ W+ +
Sbjct: 100 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 157
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+ +LGN++V V+ +++ TN ++VSL+ AD++V + A+P + +
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITI----STGFCAAC 74
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
+GC + +S +L+A ++RYIAI P+ + + T RA I+ W+ +
Sbjct: 75 HGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLS 132
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+ +LGN++V V+ +++ TN ++VSL+ AD+ V + A+P + +
Sbjct: 34 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI----STGFCAAC 89
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
+GC + +S +L+A ++RYIAI P+ + + T RA+ I+ W+ +
Sbjct: 90 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 147
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+ +LGN++V V+ +++ TN ++VSL+ AD+ V + A+P + +
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI----STGFCAAC 74
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
+GC + +S +L+A ++RYIAI P+ + + T RA+ I+ W+ +
Sbjct: 75 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 132
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN 148
+ +LGN++V V+ +++ TN ++VS + AD++V + A+P + +
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI----STGFCAAC 74
Query: 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
+GC + +S +L+A ++RYIAI P+ + + T RA+ I+ W+ +
Sbjct: 75 HGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 132
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVS----YYQEKYTWLW 146
+L NI V+ ++K + P ++ +L+++DL+ +A N L+S Y W
Sbjct: 78 ILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWF- 136
Query: 147 GNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICK 182
+ ++ ++AS +L+A +ERYI + K
Sbjct: 137 ------LREGSMFVALSASVFSLLAIAIERYITMLK 166
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 91 LLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150
LLGN +V+ V+ R R+ T+ Y + ++ +P S + W++G +
Sbjct: 26 LLGNSLVMLVILYSRVGRSVTDVY-LLNLALADLLFALTLPIWAAS---KVNGWIFGTFL 81
Query: 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYV----WIFA 206
CK+ L+ + + L L +V+RY+AI H TL + R ++ +V W +
Sbjct: 82 CKVVSLLKEVNFYSGILLLACISVDRYLAI-----VHATRTLTQKRHLVKFVCLGCWGLS 136
Query: 207 VIYSSPWLFLTET 219
+ S P+ +
Sbjct: 137 MNLSLPFFLFRQA 149
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 112 NCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLW 146
N + LS D +++ P L+ +Y++K WLW
Sbjct: 118 NSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLW 152
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 112 NCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLW 146
N + LS D +++ P L+ +Y++K WLW
Sbjct: 118 NSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLW 152
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 111 TNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLW 146
N + LS D +++ P L+ +Y++K WLW
Sbjct: 117 ENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLW 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,411,628
Number of Sequences: 62578
Number of extensions: 291569
Number of successful extensions: 712
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 44
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)