Query psy3090
Match_columns 326
No_of_seqs 210 out of 2272
Neff 10.1
Searched_HMMs 46136
Date Sat Aug 17 01:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 2.3E-35 4.9E-40 252.1 9.3 236 72-324 31-280 (423)
2 PHA03234 DNA packaging protein 100.0 6.6E-33 1.4E-37 245.2 16.6 219 73-322 29-254 (338)
3 PHA02834 chemokine receptor-li 100.0 4.3E-30 9.3E-35 227.0 20.3 216 75-322 27-246 (323)
4 PHA03235 DNA packaging protein 100.0 7.2E-30 1.6E-34 230.7 18.3 220 73-322 29-261 (409)
5 PHA02638 CC chemokine receptor 100.0 2.5E-29 5.5E-34 228.1 18.4 220 75-323 97-331 (417)
6 PF00001 7tm_1: 7 transmembran 100.0 6.5E-29 1.4E-33 212.0 10.2 217 93-322 1-219 (257)
7 PHA03087 G protein-coupled che 100.0 7.6E-28 1.7E-32 214.4 17.1 220 74-322 38-261 (335)
8 KOG4220|consensus 100.0 1.3E-28 2.9E-33 210.4 7.2 196 77-276 31-228 (503)
9 KOG2087|consensus 99.8 9.4E-21 2E-25 161.1 12.5 223 76-323 24-253 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.7 1.3E-17 2.7E-22 142.4 7.4 175 88-273 2-176 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.6 1.4E-14 3.1E-19 128.1 11.2 220 85-320 5-257 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.5 3.8E-14 8.2E-19 122.6 11.0 188 85-275 2-191 (274)
13 PF05296 TAS2R: Mammalian tast 99.5 1.4E-12 2.9E-17 113.8 14.5 232 74-318 4-246 (303)
14 PF05462 Dicty_CAR: Slime mold 99.2 3.7E-10 8.1E-15 97.7 12.9 144 78-234 8-151 (303)
15 PF10323 7TM_GPCR_Srv: Serpent 99.2 2.7E-11 5.8E-16 104.9 4.8 184 87-273 5-195 (283)
16 PF11710 Git3: G protein-coupl 99.1 8.1E-09 1.7E-13 84.3 15.7 162 105-274 30-200 (201)
17 PF03402 V1R: Vomeronasal orga 98.9 6.5E-09 1.4E-13 87.7 10.3 198 107-319 7-215 (265)
18 PF10321 7TM_GPCR_Srt: Serpent 98.6 1.5E-06 3.3E-11 75.8 14.7 190 74-275 30-229 (313)
19 PF10316 7TM_GPCR_Srbc: Serpen 98.5 3.2E-06 6.9E-11 72.2 13.4 123 77-199 6-129 (273)
20 PF00002 7tm_2: 7 transmembran 98.3 2E-07 4.2E-12 79.2 1.9 129 82-217 6-134 (242)
21 PF10292 7TM_GPCR_Srab: Serpen 98.3 9.9E-05 2.2E-09 65.4 18.7 158 74-235 15-177 (324)
22 PF02118 Srg: Srg family chemo 98.2 2.3E-05 5E-10 67.8 10.9 185 85-272 6-199 (275)
23 PF02101 Ocular_alb: Ocular al 98.1 3.5E-05 7.6E-10 67.1 10.6 129 81-216 31-175 (405)
24 PF10317 7TM_GPCR_Srd: Serpent 98.1 0.00015 3.3E-09 63.3 14.3 130 81-215 3-141 (292)
25 PF01534 Frizzled: Frizzled/Sm 97.8 0.001 2.2E-08 58.5 14.9 157 77-236 9-176 (328)
26 PF10327 7TM_GPCR_Sri: Serpent 97.8 0.00025 5.3E-09 62.2 10.2 195 77-276 9-228 (303)
27 PF02117 7TM_GPCR_Sra: Serpent 97.7 0.0054 1.2E-07 54.4 17.2 114 74-187 18-137 (328)
28 PF10326 7TM_GPCR_Str: Serpent 97.5 2.1E-05 4.5E-10 69.3 0.2 222 83-323 5-262 (307)
29 PF04789 DUF621: Protein of un 97.3 0.048 1E-06 45.9 16.6 160 109-272 47-217 (305)
30 PF10319 7TM_GPCR_Srj: Serpent 97.0 0.025 5.3E-07 49.0 13.5 114 80-193 8-130 (310)
31 KOG4193|consensus 96.8 0.0045 9.8E-08 58.9 7.5 155 89-265 332-489 (610)
32 PF10318 7TM_GPCR_Srh: Serpent 96.7 0.027 5.8E-07 49.4 11.5 137 78-216 5-148 (302)
33 KOG4564|consensus 96.6 0.018 4E-07 52.7 9.8 180 81-272 149-338 (473)
34 PF02076 STE3: Pheromone A rec 96.6 0.046 1E-06 47.2 11.7 141 89-237 3-146 (283)
35 PF10322 7TM_GPCR_Sru: Serpent 96.2 0.028 6.2E-07 49.1 8.5 123 149-272 101-226 (307)
36 PF02175 7TM_GPCR_Srb: Serpent 96.0 0.71 1.5E-05 38.3 18.1 47 142-188 76-122 (236)
37 PF06681 DUF1182: Protein of u 95.8 0.25 5.3E-06 39.9 11.3 98 84-187 48-153 (226)
38 PF03383 Serpentine_r_xa: Caen 95.6 0.011 2.3E-07 45.6 2.8 81 152-232 45-129 (153)
39 PF03125 Sre: C. elegans Sre G 94.3 0.48 1E-05 42.8 10.2 114 75-188 25-160 (365)
40 PF13853 7tm_4: Olfactory rece 90.6 0.033 7.1E-07 43.0 -2.0 92 196-287 4-103 (144)
41 PF10325 7TM_GPCR_Srz: Serpent 72.8 59 0.0013 27.7 15.3 111 156-273 87-198 (267)
42 PF15102 TMEM154: TMEM154 prot 60.7 4.8 0.0001 30.7 1.2 32 247-278 58-89 (146)
43 PF06454 DUF1084: Protein of u 56.3 1.4E+02 0.0029 26.0 13.8 51 74-127 26-77 (281)
44 KOG4349|consensus 46.7 1.2E+02 0.0025 22.5 7.2 76 87-164 58-133 (143)
45 PF11446 DUF2897: Protein of u 39.7 31 0.00067 21.6 2.2 25 79-103 4-28 (55)
46 PF00003 7tm_3: 7 transmembran 39.1 72 0.0016 26.5 5.3 28 147-174 52-79 (238)
47 PF11044 TMEMspv1-c74-12: Plec 31.8 99 0.0021 18.2 3.3 30 246-275 7-36 (49)
48 PF15086 UPF0542: Uncharacteri 29.0 51 0.0011 21.8 2.0 34 241-274 20-54 (74)
49 COG1230 CzcD Co/Zn/Cd efflux s 27.6 3.9E+02 0.0086 23.4 7.8 65 82-151 126-191 (296)
50 TIGR02736 cbb3_Q_epsi cytochro 26.5 1.2E+02 0.0026 19.0 3.2 26 251-276 6-31 (56)
51 PF01102 Glycophorin_A: Glycop 25.9 48 0.0011 24.7 1.7 16 77-92 66-81 (122)
52 COG1862 YajC Preprotein transl 25.4 38 0.00082 24.1 1.1 27 250-276 12-38 (97)
53 PF14362 DUF4407: Domain of un 24.6 2.6E+02 0.0056 24.4 6.4 23 161-183 49-71 (301)
54 KOG3577|consensus 24.3 2.7E+02 0.0058 27.0 6.8 88 146-236 305-392 (556)
55 PF09882 DUF2109: Predicted me 22.8 1.3E+02 0.0028 20.2 3.1 46 87-132 4-49 (78)
56 PF02532 PsbI: Photosystem II 22.4 1.4E+02 0.003 16.7 2.6 17 78-94 10-26 (36)
57 PF05545 FixQ: Cbb3-type cytoc 21.9 1.9E+02 0.0042 17.3 4.1 17 255-271 17-33 (49)
58 KOG4220|consensus 21.0 12 0.00027 33.9 -2.5 27 299-325 410-437 (503)
59 KOG4289|consensus 20.3 3.4E+02 0.0074 29.7 6.7 58 147-210 2222-2279(2531)
No 1
>KOG4219|consensus
Probab=100.00 E-value=2.3e-35 Score=252.08 Aligned_cols=236 Identities=22% Similarity=0.395 Sum_probs=200.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccccc
Q psy3090 72 SLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGC 151 (326)
Q Consensus 72 ~~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C 151 (326)
+...+.+.++++.++.+++++||+++++++..+|++|+.+|++++|||+||++.+++..++.....+. ++|.+|...|
T Consensus 31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G~f~C 108 (423)
T KOG4219|consen 31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFGSFYC 108 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hcccccccee
Confidence 45667888899999999999999999999999999999999999999999999999999988877776 9999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCC----cce
Q psy3090 152 KMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDP----FRE 227 (326)
Q Consensus 152 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~----~~~ 227 (326)
++..++..+...+|++++++||+|||.||.+|++.+ .+++.++..++++|+++++++.|..+..+...... ...
T Consensus 109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~ 186 (423)
T KOG4219|consen 109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRV 186 (423)
T ss_pred eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceE
Confidence 999999999999999999999999999999999887 49999999999999999999999999877665222 255
Q ss_pred eecccCCcc-----hh----hhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccc
Q psy3090 228 TCDFKLPRS-----YY----LVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNN 298 (326)
Q Consensus 228 ~C~~~~~~~-----~~----~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (326)
.|...+++. .. ..|.....++.+++|++++...|..|.+++|..+..+.++ .|..++.
T Consensus 187 ~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~-------------d~~~~~~ 253 (423)
T KOG4219|consen 187 VCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQ-------------DRKHEQL 253 (423)
T ss_pred EEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchh-------------chhhHHH
Confidence 665544332 11 1266777888899999999999999999999887433322 1234567
Q ss_pred cccceeeeeeE-EehhHHHHhhhcccc
Q psy3090 299 SSRAQVSVPCL-VHFPFVLHYLVHLPI 324 (326)
Q Consensus 299 ~~~~~~~~~~~-v~i~f~i~~~~~~p~ 324 (326)
+.+|++.||++ ++++|.+||+|..+.
T Consensus 254 kak~K~vkmliiVV~~FaicWlPyh~y 280 (423)
T KOG4219|consen 254 KAKKKVVKMLIIVVVIFAICWLPYHIY 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 77888888887 667999999998764
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=6.6e-33 Score=245.18 Aligned_cols=219 Identities=12% Similarity=0.208 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhhhee--ecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccc
Q psy3090 73 LEYRIIGTIFQSIIFIVGLLGNIMVVSVVY--KIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150 (326)
Q Consensus 73 ~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~--~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~ 150 (326)
...+.+..++|.+++++|++||+++++++. +++++|+++|+|++|||++|++.++ .+|....... ..|.+|+..
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~~---~~w~fG~~l 104 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNRE---ALFNFNQAF 104 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHh---CCccCchhH
Confidence 456788899999999999999999999554 5566689999999999999999987 5555554332 679999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeec
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCD 230 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~ 230 (326)
|++.+++.....++|++++++||+|||++|.+|.+++. ++++....+++.|+.+++.++|.+........+.....|.
T Consensus 105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~ 182 (338)
T PHA03234 105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCN 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCc
Confidence 99999999999999999999999999999999987653 3344445566679999999999887654333222234687
Q ss_pred ccCCcc-hhhhHh---HHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeee
Q psy3090 231 FKLPRS-YYLVYF---FTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSV 306 (326)
Q Consensus 231 ~~~~~~-~~~~~~---~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (326)
..++.+ .+..+. .....+++++|++++.+||.+|.+++++++ +++++|+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------------------~~~~~k~~k 237 (338)
T PHA03234 183 IHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------------------EKKHKKTLF 237 (338)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------------hhhhhhhhh
Confidence 665432 111221 122334578999999999999999986531 012345566
Q ss_pred eeE-EehhHHHHhhhcc
Q psy3090 307 PCL-VHFPFVLHYLVHL 322 (326)
Q Consensus 307 ~~~-v~i~f~i~~~~~~ 322 (326)
+++ +++.|++||+|..
T Consensus 238 ~i~~vv~vF~iCWlPy~ 254 (338)
T PHA03234 238 FIRILILSFLCIQIPNI 254 (338)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 665 7779999999964
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=227.04 Aligned_cols=216 Identities=21% Similarity=0.359 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchh
Q psy3090 75 YRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMS 154 (326)
Q Consensus 75 ~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~ 154 (326)
.+.+..+++.+++++|++||+++++++.++++ +++.|+++.|||++|++. ...+|+.+.... .+|.+|+..|++.
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~---~~w~~g~~~C~~~ 101 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL---NEWIFGEFMCKLV 101 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc---CCcCCcchHHHhH
Confidence 35577899999999999999999999887555 457899999999999986 447888765554 5799999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCC
Q psy3090 155 VFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP 234 (326)
Q Consensus 155 ~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (326)
+++...+..+|++++++||+|||.+|++|++++. .+.+++...++++|+.+++.++|+...+.... ......|.....
T Consensus 102 ~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~-~~~~~~C~~~~~ 179 (323)
T PHA02834 102 LGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDN-TDNLKQCIFNDY 179 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhcc-CCCceEEeccCC
Confidence 9999999999999999999999999999998755 35567777888999999999999877654332 223356864332
Q ss_pred cch---hhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeeeE-E
Q psy3090 235 RSY---YLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCL-V 310 (326)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 310 (326)
... ...+.....++.+++|++++.++|.+|.++++++++ +.+++..++++ +
T Consensus 180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------------------~~~~k~~k~~~~v 234 (323)
T PHA02834 180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------------------KNKTRSIKIILTV 234 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------------------cccceEEeehhHH
Confidence 221 111223334677899999999999999999976531 11234456665 6
Q ss_pred ehhHHHHhhhcc
Q psy3090 311 HFPFVLHYLVHL 322 (326)
Q Consensus 311 ~i~f~i~~~~~~ 322 (326)
++.|.+||+|..
T Consensus 235 v~~F~icWlPy~ 246 (323)
T PHA02834 235 VTFTVVFWVPFN 246 (323)
T ss_pred HHHHHHHHhhHH
Confidence 678999999963
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=7.2e-30 Score=230.71 Aligned_cols=220 Identities=19% Similarity=0.236 Sum_probs=162.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhhheeec-CCC-CChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccc
Q psy3090 73 LEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKI-RSM-RTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150 (326)
Q Consensus 73 ~~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~-~~l-~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~ 150 (326)
...+....+++.+++++|++||+++++++.++ +.. ++..++|++|||++|++.. ..+|+.+... ...|..|+..
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~~---~~~~~~g~~~ 104 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLSN---QGLLSGSVAG 104 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHhc---CccccCCCCe
Confidence 34567889999999999999999999875433 332 3566799999999999874 4788776431 1334455789
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhccc---c--c-CC
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETR---Q--I-DP 224 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~---~--~-~~ 224 (326)
|++.+++...+..+|++++++||+|||.+|++|.++.. .+++++...++++|+.+++.++|++++.+.. . + ..
T Consensus 105 Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~ 183 (409)
T PHA03235 105 CKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAP 183 (409)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCC
Confidence 99999999999999999999999999999999976554 4688899999999999999999976643211 1 1 12
Q ss_pred cceeecccCCcch----hhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccc
Q psy3090 225 FRETCDFKLPRSY----YLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSS 300 (326)
Q Consensus 225 ~~~~C~~~~~~~~----~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (326)
....|...+..+. ...|.....++.+++|+++|++||.+|++++++++++ +
T Consensus 184 ~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~-------------------------~ 238 (409)
T PHA03235 184 GYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK-------------------------K 238 (409)
T ss_pred CcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------------------------c
Confidence 3456865443332 1224455566778999999999999999999875321 1
Q ss_pred cceeeeeeE-EehhHHHHhhhcc
Q psy3090 301 RAQVSVPCL-VHFPFVLHYLVHL 322 (326)
Q Consensus 301 ~~~~~~~~~-v~i~f~i~~~~~~ 322 (326)
+++..++++ +++.|++||+|..
T Consensus 239 ~~k~~~~v~iivv~F~iCWlPy~ 261 (409)
T PHA03235 239 RSRTLTFVCILLLSFLCLQTPFV 261 (409)
T ss_pred chhhhhhHHHHHHHHHHHHhHHH
Confidence 123344444 5568999999963
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.97 E-value=2.5e-29 Score=228.12 Aligned_cols=220 Identities=23% Similarity=0.408 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchh
Q psy3090 75 YRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMS 154 (326)
Q Consensus 75 ~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~ 154 (326)
......+++.+++++|++||+++++++.+ |++|++.+++++|||++|++.++ ..|+.+.... ++|.+|+..|++.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~~---~~W~fg~~~Ck~~ 171 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNEF---DQWIFGDFMCKVI 171 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHh---ccccccccchhhH
Confidence 45677888999999999999999987654 77889999999999999998765 7888776553 6899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc-------cC--Cc
Q psy3090 155 VFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ-------ID--PF 225 (326)
Q Consensus 155 ~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~-------~~--~~ 225 (326)
.++.....+++++.++++++|||++|++|.++++..++++....++++|+++++.++|+.++.+... .+ ..
T Consensus 172 ~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~ 251 (417)
T PHA02638 172 SASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETIS 251 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCcc
Confidence 9999999999999999999999999999999887777778888899999999999999988765331 11 12
Q ss_pred ceeecccCCcch------hhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeeccccccc
Q psy3090 226 RETCDFKLPRSY------YLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNS 299 (326)
Q Consensus 226 ~~~C~~~~~~~~------~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (326)
...|....+... ...+.....++++++|++++++||.+|+++++|.+++ +
T Consensus 252 ~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~------------------------~ 307 (417)
T PHA02638 252 NYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS------------------------K 307 (417)
T ss_pred CCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------c
Confidence 346765433221 1122333456678999999999999999999764310 1
Q ss_pred ccceeeeeeEEehhHHHHhhhccc
Q psy3090 300 SRAQVSVPCLVHFPFVLHYLVHLP 323 (326)
Q Consensus 300 ~~~~~~~~~~v~i~f~i~~~~~~p 323 (326)
++|.++.++.++++|++||+|...
T Consensus 308 k~k~~rli~~ivi~f~lcW~Py~i 331 (417)
T PHA02638 308 KTKSIIIVSIIIICSLICWIPLNI 331 (417)
T ss_pred cchhhhhHHHHHHHHHHHHhhHHH
Confidence 122233334477899999999643
No 6
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.96 E-value=6.5e-29 Score=212.02 Aligned_cols=217 Identities=29% Similarity=0.534 Sum_probs=180.3
Q ss_pred HhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHHHHHHH
Q psy3090 93 GNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAF 172 (326)
Q Consensus 93 gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~i 172 (326)
||++++.++.++|++|++.++++.|||++|++.++...|........ +.|..++..|++..++..++..++.++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~i 78 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--DDWIFSSFLCRIFGFLFYFSSFSSIFSLVAI 78 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--SSCTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888887777765 7899999999999999999999999999999
Q ss_pred HHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCc-ceeecccCCcchhhhHhHHHHHHhhh
Q psy3090 173 TVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPF-RETCDFKLPRSYYLVYFFTDIIVFYV 251 (326)
Q Consensus 173 sidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
++|||++|++|.+|++..+++++...++++|+.+++.++|+.+..+....... ...|..+........+.....++.++
T Consensus 79 s~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T PF00001_consen 79 SIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFI 158 (257)
T ss_dssp HHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999887555443333 67898887665444567777888899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeeeE-EehhHHHHhhhcc
Q psy3090 252 IPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCL-VHFPFVLHYLVHL 322 (326)
Q Consensus 252 lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~i~f~i~~~~~~ 322 (326)
+|++++.++|.+|++.++|++++.++... ++.+++.+++++..+++. +.+.|.+||+|..
T Consensus 159 ~p~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~ 219 (257)
T PF00001_consen 159 LPLIIILICYIRILRKLRRQRKRIKSQSS-----------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYF 219 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTCCHTS-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeeecccccccccccccccccccc-----------cccccccccccccccccccccccccccCCcee
Confidence 99999999999999999998876554332 111233444555555554 6778999999864
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.96 E-value=7.6e-28 Score=214.38 Aligned_cols=220 Identities=27% Similarity=0.489 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccch
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKM 153 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~ 153 (326)
..+.+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|........ ..|.+++..|+.
T Consensus 38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~--~~~~~~~~~C~~ 113 (335)
T PHA03087 38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYIL--FQWSFGEFACKI 113 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhC--CCCCCCcHHHHH
Confidence 4456788889999999999999999999887 8889999999999999998877 45655533333 778899999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccC
Q psy3090 154 SVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKL 233 (326)
Q Consensus 154 ~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~ 233 (326)
..++......+|++++++||+|||++|++|++|+...+++++..+++++|+++++.++|+........ +.....|...+
T Consensus 114 ~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~-~~~~~~C~~~~ 192 (335)
T PHA03087 114 VSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKK-DHETLICCMFY 192 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeec-cCCCceEEecC
Confidence 99999999999999999999999999999999999889999999999999999999998877665443 33445676554
Q ss_pred Ccch---hhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeeeE-
Q psy3090 234 PRSY---YLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCL- 309 (326)
Q Consensus 234 ~~~~---~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 309 (326)
+... ...+......+.+++|.++++++|.+|.+.+++++++ ++++++.|++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~------------------------~~~~k~~k~l~~ 248 (335)
T PHA03087 193 NNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS------------------------KKNKKAIKLVLI 248 (335)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------------hhcchHHHhHHH
Confidence 4221 1112233456678999999999999999888765421 11233345554
Q ss_pred EehhHHHHhhhcc
Q psy3090 310 VHFPFVLHYLVHL 322 (326)
Q Consensus 310 v~i~f~i~~~~~~ 322 (326)
+.+.|.+||+|..
T Consensus 249 iv~~f~i~w~P~~ 261 (335)
T PHA03087 249 IVILFVIFWLPFN 261 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 6678999999853
No 8
>KOG4220|consensus
Probab=99.95 E-value=1.3e-28 Score=210.36 Aligned_cols=196 Identities=19% Similarity=0.314 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhh
Q psy3090 77 IIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVF 156 (326)
Q Consensus 77 ~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~ 156 (326)
.+.+++...++++.++||++|++.+.-+|++++..|+|+++||++|++.+.+.+|.+..+.+. +.|..|...|.+...
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm--g~W~LG~~~CdlWLa 108 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM--GYWPLGPLVCDLWLA 108 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH--cccccchHHHHHHHH
Confidence 455677789999999999999999999999999999999999999999999999999888887 999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc--cCCcceeecccCC
Q psy3090 157 LQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ--IDPFRETCDFKLP 234 (326)
Q Consensus 157 ~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~--~~~~~~~C~~~~~ 234 (326)
+.++...+|++.+..|++|||..|.+|+.|+...|.+|+..+|+..|++|+++..|..++|.... .....+.|...+-
T Consensus 109 lDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFl 188 (503)
T KOG4220|consen 109 LDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFL 188 (503)
T ss_pred HHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999887665 2345678877654
Q ss_pred cchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy3090 235 RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKH 276 (326)
Q Consensus 235 ~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~ 276 (326)
+... ..+-..+..|-+|..+|.+.|.+|++..+++.+...
T Consensus 189 snp~--iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~ 228 (503)
T KOG4220|consen 189 SNPA--ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA 228 (503)
T ss_pred cCce--eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4432 234445667889999999999999999988765543
No 9
>KOG2087|consensus
Probab=99.85 E-value=9.4e-21 Score=161.05 Aligned_cols=223 Identities=19% Similarity=0.250 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHh------hhcccccccccc
Q psy3090 76 RIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSY------YQEKYTWLWGNY 149 (326)
Q Consensus 76 ~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~------~~~~~~~~~~~~ 149 (326)
..+.-+...++..+++.||.+|+......+...+....++.|||.+|+++++.......... ..+...|..| .
T Consensus 24 ~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg-~ 102 (363)
T KOG2087|consen 24 YWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTG-L 102 (363)
T ss_pred cceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhc-C
Confidence 34555667899999999999999999988887788999999999999999987554433222 2223456655 8
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceee
Q psy3090 150 GCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETC 229 (326)
Q Consensus 150 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C 229 (326)
.|++.+|+..++...|+++++.+++||++.|++|+|-.+....|....+++..|+.+++.++.|++....+. ....|
T Consensus 103 gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~---~~~vC 179 (363)
T KOG2087|consen 103 GCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG---ASSVC 179 (363)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc---cccee
Confidence 999999999999999999999999999999999999888667777999999999999999999998854443 34788
Q ss_pred cccCCcchhhh-HhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeee
Q psy3090 230 DFKLPRSYYLV-YFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPC 308 (326)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (326)
.+-..++.... |+....+....+.++++..+|++++..+++....... +....+++|.
T Consensus 180 lPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~---------------------~~~~~akr~a 238 (363)
T KOG2087|consen 180 LPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL---------------------ISTSVAKRMA 238 (363)
T ss_pred eecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc---------------------chhhhhhCee
Confidence 87665555555 7788888889999999999999999998766532211 1135567788
Q ss_pred EEehhHHHHhhhccc
Q psy3090 309 LVHFPFVLHYLVHLP 323 (326)
Q Consensus 309 ~v~i~f~i~~~~~~p 323 (326)
.++..=++||.|...
T Consensus 239 ~LvfTd~icw~Pi~f 253 (363)
T KOG2087|consen 239 FLVFTDCICWCPIAF 253 (363)
T ss_pred EEEEccccccCchhe
Confidence 888888899988753
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.71 E-value=1.3e-17 Score=142.37 Aligned_cols=175 Identities=21% Similarity=0.348 Sum_probs=124.3
Q ss_pred HHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHH
Q psy3090 88 IVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSL 167 (326)
Q Consensus 88 i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 167 (326)
++|++||..++.++.++|++|+|.++++..+|++|++.+...+|.....+. +.......|-...+...++...+..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~----~~~i~~~~Cf~~~~~~~f~~~~qs~ 77 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR----DHQITRSECFWQIFFYIFFQCAQSV 77 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh----heeccHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999988888775442 3344556899999999999999999
Q ss_pred HHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCcchhhhHhHHHHH
Q psy3090 168 NLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDII 247 (326)
Q Consensus 168 ~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 247 (326)
.+.+|++||++||+.|.+|+...+.+..........+.+........ ....+.....|.+...-+.... .. ...
T Consensus 78 ~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~----~~~~~~~~~~C~pp~a~~~~~~-~~-~~~ 151 (257)
T PF10320_consen 78 IMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGF----LYRDDETIVICNPPLAFHGTAS-QI-WSY 151 (257)
T ss_pred HHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhhee----EecCCcccccCCCccccCccHH-HH-HHH
Confidence 99999999999999999999988887555544544444444333222 2222234678887653322111 11 111
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhccc
Q psy3090 248 VFYVIPLALSCLLYILIAHALLSSKS 273 (326)
Q Consensus 248 ~~~~lp~~ii~~~y~~I~~~l~~~~~ 273 (326)
. .++..+++++.|...+..++++++
T Consensus 152 ~-~~~inv~tvivY~i~~~~~~~k~~ 176 (257)
T PF10320_consen 152 S-NIIINVITVIVYIITIIIFKRKSR 176 (257)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 222334455667777766666554
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.57 E-value=1.4e-14 Score=128.05 Aligned_cols=220 Identities=23% Similarity=0.319 Sum_probs=152.9
Q ss_pred HHHHHHHHHhHhhhhheeecCCCC-ChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhcc---c----cccccccccchhhh
Q psy3090 85 IIFIVGLLGNIMVVSVVYKIRSMR-TPTNCYLVSLSIADLMVLIAAVPNELVSYYQEK---Y----TWLWGNYGCKMSVF 156 (326)
Q Consensus 85 ~i~i~gi~gN~~vl~v~~~~~~l~-~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~---~----~~~~~~~~C~~~~~ 156 (326)
+++++|+++|.+.+.++.| |.+| ++.|.++..+|++|++..+..++.......... . ..........+...
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 4578999999999999987 5566 589999999999999999988777765544210 0 01111112234556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccc--cccccchhhHHHHHHHHHHHHHHhhHHhhhcccccC---Ccceeecc
Q psy3090 157 LQYLGINASSLNLIAFTVERYIAICKPMLAH--RICTLNRARKILIYVWIFAVIYSSPWLFLTETRQID---PFRETCDF 231 (326)
Q Consensus 157 ~~~~~~~~s~~~l~~isidRy~~i~~P~~~~--~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~---~~~~~C~~ 231 (326)
+...+..+|.|..++||+.|++++++|++.+ ...+++.+...+.++++++..+..+..+.....+.. .+...|..
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 7888899999999999999999999998654 466778888888889999999998888665554321 23456751
Q ss_pred c---CCcc----------------hhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeee
Q psy3090 232 K---LPRS----------------YYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTH 292 (326)
Q Consensus 232 ~---~~~~----------------~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (326)
. .... ....+.....++.-++|.++..+..+.+++.+|+.++++++..+
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~------------ 231 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSS------------ 231 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccc------------
Confidence 1 0000 01122333344457899999999999999999998877665431
Q ss_pred cccccccccceeeeeeE-EehhHHHHhhh
Q psy3090 293 RHTKNNSSRAQVSVPCL-VHFPFVLHYLV 320 (326)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-v~i~f~i~~~~ 320 (326)
++.+++.+.+++++ +.+.|.++-+|
T Consensus 232 ---~~~~~~~~tt~li~~~ti~f~i~e~p 257 (318)
T PF10324_consen 232 ---SKSKKSDRTTKLILFMTISFLISELP 257 (318)
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHH
Confidence 11334555666666 44677776655
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.54 E-value=3.8e-14 Score=122.56 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=129.1
Q ss_pred HHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccc-cccc-ccchhhhhhHHHH
Q psy3090 85 IIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWL-WGNY-GCKMSVFLQYLGI 162 (326)
Q Consensus 85 ~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~-~~~~-~C~~~~~~~~~~~ 162 (326)
.++++|++.|.+++..+.|.+.+|++.+.+..+.|++|.+.++..+-.. ..... .+.. ..+. .=.+.+.....+.
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~-~P~~~--~~~~~~~~~~~s~~~g~~~~~~y 78 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWV-VPMTL--LDISFLPSSLNSIIFGFIGMFCY 78 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHH-HHhhh--cccccCchHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999998533222 22211 1111 1221 2234477888888
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCcchhhhHh
Q psy3090 163 NASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYF 242 (326)
Q Consensus 163 ~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 242 (326)
..+.++-.+||++|+++|..|.+|+++.+.+.+..+++++|++++....+..+..+.......+..-.....++.-..+.
T Consensus 79 ~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~ 158 (274)
T PF10328_consen 79 FIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYS 158 (274)
T ss_pred HHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhh
Confidence 89999999999999999999999999999999999999999999977766665443333111111111101110111122
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhccccc
Q psy3090 243 FTDIIVFYVIPLALSCLLYILIAHALLSSKSMK 275 (326)
Q Consensus 243 ~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~ 275 (326)
..........-.+++.+++..++.++++.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~ 191 (274)
T PF10328_consen 159 WYFDFYKNFILVIISNILNIITFIKLRKFRKKI 191 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 222233345556667778888888888776655
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.47 E-value=1.4e-12 Score=113.84 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeec---CCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccc
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKI---RSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYG 150 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~---~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~ 150 (326)
..+.+..++..+.+++|++||++++.+-..+ ++.-+|.+..+.+||+++++............... ......+..
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~--~~~~~~~~~ 81 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFF--PNIYFSENV 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--chhhhhhhH
Confidence 3456678888999999999999999887654 22236999999999999999887654444444432 333445668
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc----cccccchhhHHHHHHHHHHHHHHhhHHhhhcccccC---
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAH----RICTLNRARKILIYVWIFAVIYSSPWLFLTETRQID--- 223 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~----~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~--- 223 (326)
++...++..++...|.|..+++++--++.|...-+.- ++.=.+...+++.+.+++++...++....++.....
T Consensus 82 ~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~ 161 (303)
T PF05296_consen 82 YKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNT 161 (303)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccc
Confidence 8899999999999999999999999999998653321 111123345566777778874444433333322110
Q ss_pred Ccceeecc-cCCcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccc
Q psy3090 224 PFRETCDF-KLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRA 302 (326)
Q Consensus 224 ~~~~~C~~-~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (326)
.....+.. ...+.....+......+..++|+++++++...+...++||.|+.++..... +.++.+++.
T Consensus 162 ~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~-----------~~ps~~aH~ 230 (303)
T PF05296_consen 162 NNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGF-----------RDPSTEAHI 230 (303)
T ss_pred cCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----------CCCCcHHHH
Confidence 11111111 111222222334444588899999999999999999999998887654321 135677788
Q ss_pred eeeeeeEEehhHHHHh
Q psy3090 303 QVSVPCLVHFPFVLHY 318 (326)
Q Consensus 303 ~~~~~~~v~i~f~i~~ 318 (326)
++.|+++..+.+++.|
T Consensus 231 ~a~k~~~sfl~ly~~~ 246 (303)
T PF05296_consen 231 RAIKTMISFLILYIIY 246 (303)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887555444433
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.18 E-value=3.7e-10 Score=97.67 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhh
Q psy3090 78 IGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFL 157 (326)
Q Consensus 78 ~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~ 157 (326)
....+..+..+++++|-++++..+.+.|++|++.+-++..++++|++..+........ ..-..+...|++++++
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~------~~~~~~s~lC~~Qafl 81 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS------PSAGENSFLCQFQAFL 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCCCCcchhhHhHH
Confidence 4445567779999999999999999999999999999999999999987644322211 2223456789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCC
Q psy3090 158 QYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP 234 (326)
Q Consensus 158 ~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (326)
.+++..++.+-.++||++=|..+.++.. . .++.-+....++|.++++.++.++... .+......|.....
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~--~--~~k~e~~Y~l~~wGiPli~a~i~l~~~---~~g~~G~WCWI~~~ 151 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYD--E--LEKLEKYYHLVCWGIPLIPAVIPLIGN---DYGPAGNWCWIKPE 151 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCc--c--HHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCCCCCceeecCC
Confidence 9999999999999999999998876432 2 345566788999999999877765432 22344568876644
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.16 E-value=2.7e-11 Score=104.90 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=119.1
Q ss_pred HHHHHHHhHhhhhheeecCC----CCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc--cccccccccchhhhhhHH
Q psy3090 87 FIVGLLGNIMVVSVVYKIRS----MRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKY--TWLWGNYGCKMSVFLQYL 160 (326)
Q Consensus 87 ~i~gi~gN~~vl~v~~~~~~----l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~ 160 (326)
+++.++-...+++++.+.|+ ++++.+-++.+-+++|++..+............... ....++..-+......+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34555666666666666544 458999999999999999987643322211110000 111222234555566777
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-ccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCcchhh
Q psy3090 161 GINASSLNLIAFTVERYIAICKPM-LAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYL 239 (326)
Q Consensus 161 ~~~~s~~~l~~isidRy~~i~~P~-~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 239 (326)
...+.....+.+|++||.+|++|. ++.+..++.+...++++-|+.+++.++|.+...+..- +.... .....+....
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f-~~~~~--~~~~~d~~~~ 161 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYF-DNEEN--MSLFVDPEFI 161 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceee-ecccc--eeeecCHHHH
Confidence 778888899999999999999999 8888888889999999999999999998544332222 11111 1111111111
Q ss_pred hHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Q psy3090 240 VYFFTDIIVFYVIPLALSCLLYILIAHALLSSKS 273 (326)
Q Consensus 240 ~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~ 273 (326)
............+.++..+++|..+...+||+.+
T Consensus 162 ~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k 195 (283)
T PF10323_consen 162 QRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK 195 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222333444566677888999999999998764
No 16
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.08 E-value=8.1e-09 Score=84.33 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=104.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3090 105 RSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPM 184 (326)
Q Consensus 105 ~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~ 184 (326)
++.+.-.+-++.||.++|++.++..+......... +.-..+...|..++++..+...++-+...+||++-|+.+.+|-
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~--~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~ 107 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLAR--GGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPN 107 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444555699999999999998765544444432 3444567899999999999999999999999999999999982
Q ss_pred c------ccc---ccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCcchhhhHhHHHHHHhhhHHHH
Q psy3090 185 L------AHR---ICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLA 255 (326)
Q Consensus 185 ~------~~~---~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~lp~~ 255 (326)
. ..+ ...+........+.|++...++ ....+...+.+....|..+....... ....-+.-.+..+
T Consensus 108 ~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la---~i~~~~~~Y~~~g~WCWi~~~~~~~R---l~l~y~~~~~~~~ 181 (201)
T PF11710_consen 108 WKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLA---FIGLGGPGYGPAGAWCWIPSRYEWYR---LWLHYIWRFIIIF 181 (201)
T ss_pred cccccccccccceEEeeeeeehHHHHHHHHHHHHH---HhccccCcccccCcEEEECCCcHHHH---HHHHHHHHHHHHH
Confidence 1 110 0111222222333444433332 22222333445678898776554333 3333334455677
Q ss_pred HHHHHHHHHHHHHHhcccc
Q psy3090 256 LSCLLYILIAHALLSSKSM 274 (326)
Q Consensus 256 ii~~~y~~I~~~l~~~~~~ 274 (326)
.+++.|..|+..+||+.|+
T Consensus 182 ~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 182 AIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 7888899999999887653
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.95 E-value=6.5e-09 Score=87.69 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHh-hhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3090 107 MRTPTNCYLVSLSIADLMVLIA-AVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPML 185 (326)
Q Consensus 107 l~~~~~~~l~~Lai~Dll~~l~-~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~ 185 (326)
..+|.+..+.+||++|.+..+. .+|....... .. .+++.+||...++..++...|+.+.+++++-.-+.|.-...
T Consensus 7 r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~---~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s 82 (265)
T PF03402_consen 7 RLKPIDLILIHLALANILVLLSRGIPQTMAFFG---WK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNS 82 (265)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhh---cc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCc
Confidence 3479999999999999999987 6776543332 22 36899999999999999999999999999966666653221
Q ss_pred c---ccccccchhhHHHHHHHHHHHHHHhhHHhhhc--ccc----cCCcceeecccCCcchhhhHhHHHHHHhhhHHHHH
Q psy3090 186 A---HRICTLNRARKILIYVWIFAVIYSSPWLFLTE--TRQ----IDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLAL 256 (326)
Q Consensus 186 ~---~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~--~~~----~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~lp~~i 256 (326)
. -+...++.....+...|++..++......... ... .......|.....+......+.....+--++.+.+
T Consensus 83 ~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgL 162 (265)
T PF03402_consen 83 RWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGL 162 (265)
T ss_pred hhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHH
Confidence 1 11223455666778889998887654333221 111 11123467654333222222333344556777888
Q ss_pred HHHHHHHHHHHHHhcccccccCceecccceeeeeeecccccccccceeeeeeEEe-hhHHHHhh
Q psy3090 257 SCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVH-FPFVLHYL 319 (326)
Q Consensus 257 i~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-i~f~i~~~ 319 (326)
|..+.+.++..+.||+++.+.-...+. .++...+.|+++.+++. ..|..+|.
T Consensus 163 M~~aSgyMV~~L~RH~q~VqhIhs~~~-----------s~r~SpE~RAtktILlLVs~FV~fY~ 215 (265)
T PF03402_consen 163 MIWASGYMVFLLYRHHQQVQHIHSSSL-----------SPRSSPETRATKTILLLVSTFVSFYG 215 (265)
T ss_pred HHhhhhhheeeeeecccccccCcCCCC-----------CCCCChhHHHhCeEeeHHHHHHHHHh
Confidence 999999999999999887776543221 23445566677777644 35555554
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.62 E-value=1.5e-06 Score=75.84 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccc-
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCK- 152 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~- 152 (326)
..+.+..+.+.+.+++-.+..+..+.++.+++..|.+.+-++.-||+.|+..........-.... .|...|.
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-------~G~vfC~~ 102 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI-------FGAVFCSY 102 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-------cCccccCC
Confidence 34557778888888888899999999999877778899999999999999988642111111111 1333443
Q ss_pred -----hhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH--hhHHhhhcccccCCc
Q psy3090 153 -----MSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS--SPWLFLTETRQIDPF 225 (326)
Q Consensus 153 -----~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~--~~~~~~~~~~~~~~~ 225 (326)
+.|.+...+..++......++++|..-+..|.........++....+.+..+.++... .++..+.....
T Consensus 103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~---- 178 (313)
T PF10321_consen 103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYM---- 178 (313)
T ss_pred chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcc----
Confidence 4556677788889999999999999999998777766676666555544443333222 23332211111
Q ss_pred ceeecccC--CcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccc
Q psy3090 226 RETCDFKL--PRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMK 275 (326)
Q Consensus 226 ~~~C~~~~--~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~ 275 (326)
..-.++. ++.....|.........++-.+.+..+|..+...++++++..
T Consensus 179 -sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~ 229 (313)
T PF10321_consen 179 -SWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS 229 (313)
T ss_pred -eEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0111110 111122244444455566667788889999999888876544
No 19
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.51 E-value=3.2e-06 Score=72.22 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccc-cccccchhh
Q psy3090 77 IIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLW-GNYGCKMSV 155 (326)
Q Consensus 77 ~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~-~~~~C~~~~ 155 (326)
.+...+-.+...+....|..++..+...|+.+++...+.-...+.|.+.+....+...........+... ....--+.+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 3555667788899999999999999877774455556666789999999998766555444321111111 112223344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHH
Q psy3090 156 FLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKIL 199 (326)
Q Consensus 156 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i 199 (326)
................||+||..|+..|..|++..++-....++
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~ 129 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIII 129 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHH
Confidence 45555667788899999999999999999988854444433333
No 20
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.33 E-value=2e-07 Score=79.18 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHH
Q psy3090 82 FQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLG 161 (326)
Q Consensus 82 ~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 161 (326)
+..+-+.+++++-.+.+.++...|++|+..+....||++++++..+..+........ ......+..|+..+.+.+++
T Consensus 6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~---~~~~~~~~~C~~~a~~~hy~ 82 (242)
T PF00002_consen 6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFS---PISTTNHCLCRAIAILLHYF 82 (242)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccc---cccccccccchhhhhHhHHH
Confidence 334455555666556566555557777777888899999999887754332111111 11111223599999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhh
Q psy3090 162 INASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLT 217 (326)
Q Consensus 162 ~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~ 217 (326)
..++..-+.+.+++-|..+..+... .+++.+...++.|.++++.........
T Consensus 83 ~la~f~Wm~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 83 FLASFFWMLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeeeec
Confidence 9999999999999999999876221 244556677888999888777655544
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.31 E-value=9.9e-05 Score=65.40 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHH---HHHhh--hccccccccc
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNE---LVSYY--QEKYTWLWGN 148 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~---~~~~~--~~~~~~~~~~ 148 (326)
..+ ...++..+++++|++.++..+....+++..|....+++....++.++.++.-+-.. +..+. ..+.+...+.
T Consensus 15 ~l~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~ 93 (324)
T PF10292_consen 15 FLR-LSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPST 93 (324)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccch
Confidence 444 34455788889999999999888888888888888999999999998886532222 22222 2233445566
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCccee
Q psy3090 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRET 228 (326)
Q Consensus 149 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~ 228 (326)
..|-.......++......+..++++||++|-.+.-+|.+. ++.....+..+-|+++........ .+....+.....
T Consensus 94 ~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~--~~~~~~~~~~~y 170 (324)
T PF10292_consen 94 YRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVY--SDEDFPNERMYY 170 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHH--hhhhccCcccee
Confidence 77888888999999999999999999999999999888873 222223334444555444332222 121112444566
Q ss_pred ecccCCc
Q psy3090 229 CDFKLPR 235 (326)
Q Consensus 229 C~~~~~~ 235 (326)
|....++
T Consensus 171 C~~~~~~ 177 (324)
T PF10292_consen 171 CQASSSS 177 (324)
T ss_pred eEEecCC
Confidence 8776544
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.15 E-value=2.3e-05 Score=67.81 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=107.2
Q ss_pred HHHHHHHHHhHhhhhheeecCC--C-CChhHHHHHHHHHHHHHHHHhhhhH-HHHHhhhccc----c-ccccccccchhh
Q psy3090 85 IIFIVGLLGNIMVVSVVYKIRS--M-RTPTNCYLVSLSIADLMVLIAAVPN-ELVSYYQEKY----T-WLWGNYGCKMSV 155 (326)
Q Consensus 85 ~i~i~gi~gN~~vl~v~~~~~~--l-~~~~~~~l~~Lai~Dll~~l~~~p~-~~~~~~~~~~----~-~~~~~~~C~~~~ 155 (326)
+=++.+++.+..+++++.++|+ . +++.+.+...=++.|++.-+...+. .+........ . ....+...+...
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 4456777888888888888776 4 6777877777778888776543332 2211100000 0 112334566677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCc
Q psy3090 156 FLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPR 235 (326)
Q Consensus 156 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 235 (326)
++.+.+..+.......++++|+.++..|.++.+..++.. ...++++.++++....+..........+.+...-......
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDTV 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEecc
Confidence 788888999999999999999999999999998766443 3344445555554433333322222222222222222111
Q ss_pred chhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Q psy3090 236 SYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSK 272 (326)
Q Consensus 236 ~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~ 272 (326)
++. .........+++..++.++++....+++++.+
T Consensus 165 ~~~--~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 165 SWA--SLSIFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred chh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 11222333445555566667777777777655
No 23
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.10 E-value=3.5e-05 Score=67.14 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCC----CCCh--hHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccc----------
Q psy3090 81 IFQSIIFIVGLLGNIMVVSVVYKIRS----MRTP--TNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTW---------- 144 (326)
Q Consensus 81 ~~~~~i~i~gi~gN~~vl~v~~~~~~----l~~~--~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~---------- 144 (326)
.+-+.-..+|+.|-++-+.--.|... .++| ..-.+..||++|++.++..+.-....... +...
T Consensus 31 avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~-p~~~~s~s~~~~~d 109 (405)
T PF02101_consen 31 AVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGF-PNFIDSISDVNGTD 109 (405)
T ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcC-CcccccccCCCCCc
Confidence 33455666777776666652222111 1122 34688999999999998655443333221 1111
Q ss_pred cccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhh
Q psy3090 145 LWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFL 216 (326)
Q Consensus 145 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~ 216 (326)
......|.....-.+++..++.|-+.+-|+|-|+.+.+.- .+.+....-.++|..+.+++.-....
T Consensus 110 ~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~ 175 (405)
T PF02101_consen 110 IWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAM 175 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccce
Confidence 1123578887777778889999999999999999886531 12234466678999988877665443
No 24
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.06 E-value=0.00015 Score=63.26 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCCC-CChhHHHHHHHHHHHHHHHHhhhhHHHHHhhh--------cccccccccccc
Q psy3090 81 IFQSIIFIVGLLGNIMVVSVVYKIRSM-RTPTNCYLVSLSIADLMVLIAAVPNELVSYYQ--------EKYTWLWGNYGC 151 (326)
Q Consensus 81 ~~~~~i~i~gi~gN~~vl~v~~~~~~l-~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~--------~~~~~~~~~~~C 151 (326)
+++.+.+.+|++.|.++++.+.++... -++-.+++.|-|+.|++.++...-........ .+.-..+|+..|
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence 346788999999999999888775433 36778999999999999987643322211111 111223456677
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHh
Q psy3090 152 KMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLF 215 (326)
Q Consensus 152 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~ 215 (326)
.....+...+...+.+++..--.-||..+.++.. ++++....+...+..++...+...+
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777788888889998888999999987633 5566667777777777776654443
No 25
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.82 E-value=0.001 Score=58.45 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHH--hhh-cc--------cccc
Q psy3090 77 IIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVS--YYQ-EK--------YTWL 145 (326)
Q Consensus 77 ~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~--~~~-~~--------~~~~ 145 (326)
...-....+...+..+.+++.+.++..+++..+-+..-+..++++=++.++..+...+.. ... .. ....
T Consensus 9 ~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~ 88 (328)
T PF01534_consen 9 EFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDG 88 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecC
Confidence 344445566666777777777777666555334344455556666555555433332221 000 00 0112
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCc
Q psy3090 146 WGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPF 225 (326)
Q Consensus 146 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~ 225 (326)
.++..|.+...+.+++..++..--+.+++.-|++-...-.+.. -.+......+++|.++.+..+..+.....+. +.-
T Consensus 89 ~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg-D~l 165 (328)
T PF01534_consen 89 LENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDG-DEL 165 (328)
T ss_pred CCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhccccc-ccc
Confidence 3467899999998888888888888889999998876544333 3455667789999999999888777665555 566
Q ss_pred ceeecccCCcc
Q psy3090 226 RETCDFKLPRS 236 (326)
Q Consensus 226 ~~~C~~~~~~~ 236 (326)
.+.|.....+.
T Consensus 166 tGiC~Vg~~~~ 176 (328)
T PF01534_consen 166 TGICFVGNQNP 176 (328)
T ss_pred cceeEEeCCCH
Confidence 67898765544
No 26
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.76 E-value=0.00025 Score=62.17 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeec-CCCCChhHHHHH---HHHHHHHHHHHhhhhHHHHHhhhccccccccccccc
Q psy3090 77 IIGTIFQSIIFIVGLLGNIMVVSVVYKI-RSMRTPTNCYLV---SLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCK 152 (326)
Q Consensus 77 ~~~~~~~~~i~i~gi~gN~~vl~v~~~~-~~l~~~~~~~l~---~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~ 152 (326)
.+....+-++++++++.|.+.++.+..+ ++..+-.++++. ...++|+-..+..-|..+.... .++..| ..|+
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~---agy~~G-~l~~ 84 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIP---AGYCVG-FLAR 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhccee---EEEEEe-ehhh
Confidence 3777888899999999999999877654 444443333332 3567899998887777776665 333333 3344
Q ss_pred h-------hhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc----
Q psy3090 153 M-------SVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ---- 221 (326)
Q Consensus 153 ~-------~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~---- 221 (326)
+ ...+..+......-.++.--+-|+.+|.+..+.+. .++...........+..+...+......-..+
T Consensus 85 ~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~ 163 (303)
T PF10327_consen 85 YFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQME 163 (303)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3 33344445555555666667789999998876655 34443334444444444444333222111111
Q ss_pred -cCCcceeecccC---------CcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy3090 222 -IDPFRETCDFKL---------PRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKH 276 (326)
Q Consensus 222 -~~~~~~~C~~~~---------~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~ 276 (326)
.......|.... +.+............+...-.+...+++..+++.+++.+++..
T Consensus 164 yI~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS 228 (303)
T PF10327_consen 164 YIRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS 228 (303)
T ss_pred HHHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111112222211 1112222334444555666777778888899988877765433
No 27
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.66 E-value=0.0054 Score=54.38 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCC-hhHHHHHHHHHHHHHHHHhhhh---HHHHHh--hhcccccccc
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRT-PTNCYLVSLSIADLMVLIAAVP---NELVSY--YQEKYTWLWG 147 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~-~~~~~l~~Lai~Dll~~l~~~p---~~~~~~--~~~~~~~~~~ 147 (326)
....+..++..++.++++++....+-.+.++.-..+ ...+++.+|..+++-....... .....+ ..++....+.
T Consensus 18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~ 97 (328)
T PF02117_consen 18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFT 97 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEee
Confidence 344566677788888999999888888888777775 4455566777776655443221 111122 2233456677
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3090 148 NYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAH 187 (326)
Q Consensus 148 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~ 187 (326)
...|........++.....+..+++.+||.+|-..|..++
T Consensus 98 ~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 98 SSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred cCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 7889999999999999999999999999999998885544
No 28
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.53 E-value=2.1e-05 Score=69.27 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhHhhhhheeecCCCC-ChhHHHHHHHHHHHHHHHHhhhhHHHHHhh--------hccccccccccccch
Q psy3090 83 QSIIFIVGLLGNIMVVSVVYKIRSMR-TPTNCYLVSLSIADLMVLIAAVPNELVSYY--------QEKYTWLWGNYGCKM 153 (326)
Q Consensus 83 ~~~i~i~gi~gN~~vl~v~~~~~~l~-~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~--------~~~~~~~~~~~~C~~ 153 (326)
.-+.++++++.|.+.++.+.++.+.. ..=..++...|+.|++.++.-....-.... .+.+.+..+....+.
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 34667899999999998887654333 334467778899999988763322111111 011333344445566
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc------------
Q psy3090 154 SVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ------------ 221 (326)
Q Consensus 154 ~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~------------ 221 (326)
...+...+...+...++.--+.||.++++|.+.+. .+.++....+...-+.++..+....+.....+
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~-f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~ 163 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRY-FSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLE 163 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhcc-ccccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccccc
Confidence 66667777777778888888999999999975443 33333333322222233332222111111111
Q ss_pred -c--CCcce----eecc--cCCc----chhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccccccCceecccceee
Q psy3090 222 -I--DPFRE----TCDF--KLPR----SYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMV 288 (326)
Q Consensus 222 -~--~~~~~----~C~~--~~~~----~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~ 288 (326)
. +.++. ...+ +.++ ++..............+.+.++++|-.++++++++.++...
T Consensus 164 ~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S------------ 231 (307)
T PF10326_consen 164 NYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMS------------ 231 (307)
T ss_pred ccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccC------------
Confidence 0 00000 0011 0111 11111223333444678888999999999999855443210
Q ss_pred eeeecccccccccceeeeeeE--EehhHHHHhhhccc
Q psy3090 289 SVTHRHTKNNSSRAQVSVPCL--VHFPFVLHYLVHLP 323 (326)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~--v~i~f~i~~~~~~p 323 (326)
++.++.+||..+.++ ..++.+..++|...
T Consensus 232 ------~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~ 262 (307)
T PF10326_consen 232 ------SKTRKLQKQLFKALVIQTIIPFIFMYIPVFI 262 (307)
T ss_pred ------hhhHHHHHHHHHHHHHHhhhhheeeecchhh
Confidence 234455566655554 34566666666543
No 29
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.26 E-value=0.048 Score=45.90 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHHHHHHHHHh----hhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3090 109 TPTNCYLVSLSIADLMVLIA----AVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPM 184 (326)
Q Consensus 109 ~~~~~~l~~Lai~Dll~~l~----~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~ 184 (326)
-+..-++..|.++-++.... -+|..+..... ++...+ ..-.+..+...++.+.-.++=..+|++|........
T Consensus 47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t--~~~~~s-~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~ 123 (305)
T PF04789_consen 47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLIT--KEFVQS-ELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRN 123 (305)
T ss_pred chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhh--HHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehh
Confidence 46678888999888777654 45666544443 332222 344556677778888888999999999988776443
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc----cCCcceeecccC---CcchhhhHhHHHHHHhhhHHHHHH
Q psy3090 185 LAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ----IDPFRETCDFKL---PRSYYLVYFFTDIIVFYVIPLALS 257 (326)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~----~~~~~~~C~~~~---~~~~~~~~~~~~~~~~~~lp~~ii 257 (326)
+-.+...+.-.+..+..+|++++............++ ..+..-.|.... ..+.-...-.....+.+.+|..+.
T Consensus 124 ~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il 203 (305)
T PF04789_consen 124 LTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEIILQFGIPIFIL 203 (305)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHH
Confidence 3444566777888889999999887766554433333 233445565541 111112234566778888888766
Q ss_pred HHHHHHHHHHHHhcc
Q psy3090 258 CLLYILIAHALLSSK 272 (326)
Q Consensus 258 ~~~y~~I~~~l~~~~ 272 (326)
++ |+.+..++...+
T Consensus 204 ~i-YiAIIiKI~~MK 217 (305)
T PF04789_consen 204 VI-YIAIIIKIIKMK 217 (305)
T ss_pred HH-HHHHHHHHHHHh
Confidence 55 665555544433
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.05 E-value=0.025 Score=48.95 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhheeecCCCC-ChhHHHHHHHHHHHHHHHHh--hhhHHHHHhhh-----cccccccc-ccc
Q psy3090 80 TIFQSIIFIVGLLGNIMVVSVVYKIRSMR-TPTNCYLVSLSIADLMVLIA--AVPNELVSYYQ-----EKYTWLWG-NYG 150 (326)
Q Consensus 80 ~~~~~~i~i~gi~gN~~vl~v~~~~~~l~-~~~~~~l~~Lai~Dll~~l~--~~p~~~~~~~~-----~~~~~~~~-~~~ 150 (326)
-.+--+.++++.+.|-+.++.+..+|+.+ ..=.+++..-|+-|++..+. .+|..+..+-. -.++|-.. ...
T Consensus 8 ~~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l 87 (310)
T PF10319_consen 8 HYIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSEL 87 (310)
T ss_pred HHHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchH
Confidence 34446778899999999999999888777 34457778899999999987 45544322210 00111111 111
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLN 193 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~ 193 (326)
-+........+..+|-..|..=-+.||+++++|....+...+.
T Consensus 88 ~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~ 130 (310)
T PF10319_consen 88 GQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPY 130 (310)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhH
Confidence 1222233334444555566666789999999986555444333
No 31
>KOG4193|consensus
Probab=96.78 E-value=0.0045 Score=58.92 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=87.6
Q ss_pred HHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccc-c-ccchhhhhhHHHHHHHH
Q psy3090 89 VGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGN-Y-GCKMSVFLQYLGINASS 166 (326)
Q Consensus 89 ~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~s~ 166 (326)
+++++=.+.+++..--|++++..+....||+++=++.-+ .... +.|..+. . .|+..+++.+++..+..
T Consensus 332 iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l-------~fL~---~~~~~~~~~~~C~~~a~llhff~LaaF 401 (610)
T KOG4193|consen 332 ISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL-------LFLL---GIDRTSTSVVLCIAAAILLHFFFLAAF 401 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-------HHhc---ccccccCcccccHHHHHHHHHHHHHHH
Confidence 333333333333333344443336667777776222211 0111 3343332 2 69999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhccc-ccCCcceeecccCCcchhhhHhHHH
Q psy3090 167 LNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETR-QIDPFRETCDFKLPRSYYLVYFFTD 245 (326)
Q Consensus 167 ~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~~ 245 (326)
+.+..++++=|..++.- ......++......+.|...+++........... ........|..+......
T Consensus 402 ~Wm~leg~hl~~~~v~v---f~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~------- 471 (610)
T KOG4193|consen 402 FWMLLEGFHLYLLLVEV---FRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFI------- 471 (610)
T ss_pred HHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceE-------
Confidence 99999999999855543 3223445555555689998887665544432222 112233448776544321
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q psy3090 246 IIVFYVIPLALSCLLYILIA 265 (326)
Q Consensus 246 ~~~~~~lp~~ii~~~y~~I~ 265 (326)
..|+-|+.+++.+++.++
T Consensus 472 --~~F~GPv~~ii~~Ni~~F 489 (610)
T KOG4193|consen 472 --WSFLGPVTLIILVNIVMF 489 (610)
T ss_pred --EEEehHHHHHHHHHHHHH
Confidence 116677777777775444
No 32
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=96.69 E-value=0.027 Score=49.41 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhheeecCC-CCChhHHHHHH----HHHHHHHHHHhhhhHHHHHhhhcc--ccccccccc
Q psy3090 78 IGTIFQSIIFIVGLLGNIMVVSVVYKIRS-MRTPTNCYLVS----LSIADLMVLIAAVPNELVSYYQEK--YTWLWGNYG 150 (326)
Q Consensus 78 ~~~~~~~~i~i~gi~gN~~vl~v~~~~~~-l~~~~~~~l~~----Lai~Dll~~l~~~p~~~~~~~~~~--~~~~~~~~~ 150 (326)
......=++.+++++-|.+..+.+.++.. ..+.....+.+ ..+.|+..+....|........+. +-...-...
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~ 84 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVP 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccC
Confidence 34445567778889999999988776533 22444444444 345688888877776555444211 111111234
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhh
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFL 216 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~ 216 (326)
..++.++...+......+...+--+||.++....+ +. ..++.-....+..++.+.....|....
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~-~~~~~r~~~~~~~y~~~~~~~~~~~~~ 148 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RS-LWKKIRIIFIIFNYIIAFLFFIPIYLS 148 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cc-cchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666777777777788888888999999986544 11 122223334444555555566665553
No 33
>KOG4564|consensus
Probab=96.60 E-value=0.018 Score=52.69 Aligned_cols=180 Identities=11% Similarity=0.138 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc----------cccccccc
Q psy3090 81 IFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKY----------TWLWGNYG 150 (326)
Q Consensus 81 ~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~----------~~~~~~~~ 150 (326)
+++.+-..++++.=++.+.++..-|++|=..|++=.||.++=++-++..+............ .-..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 34444444555554455555556678887789999999999999888765554433321110 11256688
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeec
Q psy3090 151 CKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCD 230 (326)
Q Consensus 151 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~ 230 (326)
|+....+...+..+..+-+.+=.+.=|..+.--... .+++-...+.+.|.+.+++..+..+...... +..|.
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~~----d~~CW 300 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYLE----DTGCW 300 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHheeec----ccccc
Confidence 999998888888888877777666655555432211 3566778888999999998888777653322 34687
Q ss_pred ccCCcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Q psy3090 231 FKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSK 272 (326)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~ 272 (326)
........ +.++ -.-.++++++=.+..+.|++.+-++=
T Consensus 301 ~~~~~~~~--~WIi--~gPi~~ai~vNf~flinIvrILv~KL 338 (473)
T KOG4564|consen 301 DSNDTGHI--WWII--RGPILLAILVNFIFLINIVRILVTKL 338 (473)
T ss_pred ccCCCcce--EEEE--eccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66543111 1111 11123344444555566666665543
No 34
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.57 E-value=0.046 Score=47.24 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=79.4
Q ss_pred HHHHHhHhhhhheeec-CCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHHHHHHHH
Q psy3090 89 VGLLGNIMVVSVVYKI-RSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSL 167 (326)
Q Consensus 89 ~gi~gN~~vl~v~~~~-~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 167 (326)
++++|..+.+.-+.-+ |..+.++-.++..+.++++...+-.+ ...- +.....+..|.+..-+......+-..
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INai----IW~~---n~~~~~~~wCDI~~kl~~~~~~g~~~ 75 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAI----IWRD---NDINWWPVWCDISTKLIIGSSVGIPA 75 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhh----hcCC---CCCccCceeeeehHHHHHHHHHHHHH
Confidence 3444444444444333 33345777888889988887776221 1111 11122237899988777777666555
Q ss_pred HHHHHHHHHHhhhcccccccc--ccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCCcch
Q psy3090 168 NLIAFTVERYIAICKPMLAHR--ICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSY 237 (326)
Q Consensus 168 ~l~~isidRy~~i~~P~~~~~--~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 237 (326)
...+|+-.=+ .|..+.+... ..++|+...=+++++.+.++......+..+....-.+...|......++
T Consensus 76 a~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~ 146 (283)
T PF02076_consen 76 ASLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSW 146 (283)
T ss_pred HHHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCH
Confidence 5555543333 3444322221 1235666666677888887777766666555544555677887755543
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=96.22 E-value=0.028 Score=49.07 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=73.0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcc-cc-cCCcc
Q psy3090 149 YGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTET-RQ-IDPFR 226 (326)
Q Consensus 149 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~-~~-~~~~~ 226 (326)
..=+...++.+...+.+...-++.++-|...+..|.++.+. .++-.+...-++.+.+++.+.|.....+. .+ ..+..
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~ 179 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFP 179 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Confidence 44577778889999999999999999999999999877653 33334555556666666666665443221 11 00000
Q ss_pred -eeecccCCcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Q psy3090 227 -ETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSK 272 (326)
Q Consensus 227 -~~C~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~ 272 (326)
+.=......++...............-.+.+++.++..++++||.+
T Consensus 180 fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 180 FGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000001111111112222333344556667778899999998876
No 36
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.03 E-value=0.71 Score=38.25 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=41.1
Q ss_pred ccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy3090 142 YTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHR 188 (326)
Q Consensus 142 ~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~ 188 (326)
.+...+...+|.......+....+.+.-..+++||++|...--+|.+
T Consensus 76 CdLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 76 CDLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred ceEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 45556677889999999999999999999999999999999878876
No 37
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=95.84 E-value=0.25 Score=39.85 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhHhhhhheeecCCCC---ChhHHHHHHHHHHHHHHHHhhhhHHH-----HHhhhccccccccccccchhh
Q psy3090 84 SIIFIVGLLGNIMVVSVVYKIRSMR---TPTNCYLVSLSIADLMVLIAAVPNEL-----VSYYQEKYTWLWGNYGCKMSV 155 (326)
Q Consensus 84 ~~i~i~gi~gN~~vl~v~~~~~~l~---~~~~~~l~~Lai~Dll~~l~~~p~~~-----~~~~~~~~~~~~~~~~C~~~~ 155 (326)
.++-..+.+.+.+.+..+.++|++- +++-+| +-+..-+..+|..+ .-++..+++-......|-+..
T Consensus 48 ~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF------aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk 121 (226)
T PF06681_consen 48 FIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF------ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLK 121 (226)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE------eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHH
Confidence 4455556666666655555555421 222111 12222222444433 223322233445667898887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3090 156 FLQYLGINASSLNLIAFTVERYIAICKPMLAH 187 (326)
Q Consensus 156 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~ 187 (326)
-+...+..+.....+++|++||+.|....|.+
T Consensus 122 ~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 122 NFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS 153 (226)
T ss_pred hHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence 76666666666677789999999998754433
No 38
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.58 E-value=0.011 Score=45.62 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=57.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccc----cCCcce
Q psy3090 152 KMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQ----IDPFRE 227 (326)
Q Consensus 152 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~----~~~~~~ 227 (326)
+....+..++.....+...+|+++|-..|.+|.+.+.+.+.+|.+..+.+..++.+..-+.|.+..-... ......
T Consensus 45 ~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s 124 (153)
T PF03383_consen 45 KEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVS 124 (153)
T ss_pred CEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEE
Confidence 3344566677777888889999999999999998888889999999988777777665555544332222 223346
Q ss_pred eeccc
Q psy3090 228 TCDFK 232 (326)
Q Consensus 228 ~C~~~ 232 (326)
.|.++
T Consensus 125 ~Cap~ 129 (153)
T PF03383_consen 125 ACAPD 129 (153)
T ss_pred ccCCC
Confidence 67765
No 39
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.25 E-value=0.48 Score=42.80 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHH---HHHHHHhhhhHHHHHhhhcc-------ccc
Q psy3090 75 YRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIA---DLMVLIAAVPNELVSYYQEK-------YTW 144 (326)
Q Consensus 75 ~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~---Dll~~l~~~p~~~~~~~~~~-------~~~ 144 (326)
......++..++.+++..-....+.++.+.|..+...+++....-.. +++.-+...|.........+ .-|
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~ 104 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW 104 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence 34455566666666666666666777778788887666666554433 33333334454332221000 111
Q ss_pred ccc------------ccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy3090 145 LWG------------NYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHR 188 (326)
Q Consensus 145 ~~~------------~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~ 188 (326)
... ...-.+.+++.........+.+.++++||.+|-..--.|.+
T Consensus 105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk 160 (365)
T PF03125_consen 105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEK 160 (365)
T ss_pred ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 11122233444445566678999999999999999888887
No 40
>PF13853 7tm_4: Olfactory receptor
Probab=90.58 E-value=0.033 Score=43.04 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHhhHHhhhcccc--cCCcceeeccc------CCcchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy3090 196 RKILIYVWIFAVIYSSPWLFLTETRQ--IDPFRETCDFK------LPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHA 267 (326)
Q Consensus 196 ~~~i~~~wi~s~~~~~~~~~~~~~~~--~~~~~~~C~~~------~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~ 267 (326)
..+.+..|+.+++..++......... +......|+.. .+......+.........+.|+.+++.+|.+|++.
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEeh
Confidence 34566788888877776554321111 12223334321 11122333344445566789999999999999999
Q ss_pred HHhcccccccCceeccccee
Q psy3090 268 LLSSKSMKHKGRLIHSNVTM 287 (326)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~ 287 (326)
+.|.+..+.++|+.++..+.
T Consensus 84 vlki~S~~~r~KAfsTC~sH 103 (144)
T PF13853_consen 84 VLKIPSAEGRSKAFSTCSSH 103 (144)
T ss_pred hhcccccccccccccccccC
Confidence 99998888888877777663
No 41
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=72.79 E-value=59 Score=27.71 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccc-ccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCcceeecccCC
Q psy3090 156 FLQYLGINASSLNLIAFTVERYIAICKPMLAHR-ICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP 234 (326)
Q Consensus 156 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~-~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (326)
........+--..+..+|++|+..-..|-.-+. ..+.+.....+.....+.++..+.......... .. ..+..
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~-~~--~~~~~--- 160 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISF-NN--ESTEE--- 160 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc--ccchh---
Confidence 344445556667889999999999999862222 234455555555555555544333222211111 00 00000
Q ss_pred cchhhhHhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Q psy3090 235 RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKS 273 (326)
Q Consensus 235 ~~~~~~~~~~~~~~~~~lp~~ii~~~y~~I~~~l~~~~~ 273 (326)
.+....++........ +-..+....|+-|...+||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 161 IETFSYIYVIFYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred hhHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 1111111222222222 3355566789999999888764
No 42
>PF15102 TMEM154: TMEM154 protein family
Probab=60.72 E-value=4.8 Score=30.74 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhcccccccC
Q psy3090 247 IVFYVIPLALSCLLYILIAHALLSSKSMKHKG 278 (326)
Q Consensus 247 ~~~~~lp~~ii~~~y~~I~~~l~~~~~~~~~~ 278 (326)
++..++|.+++++.-..++..+.+.+|++.++
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 45556775555444444444444444444433
No 43
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=56.28 E-value=1.4e+02 Score=26.00 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhhheeecCCC-CChhHHHHHHHHHHHHHHHH
Q psy3090 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSM-RTPTNCYLVSLSIADLMVLI 127 (326)
Q Consensus 74 ~~~~~~~~~~~~i~i~gi~gN~~vl~v~~~~~~l-~~~~~~~l~~Lai~Dll~~l 127 (326)
......+.++.+++++|++= .+....|.+.. .++..++..-+.++.+.-++
T Consensus 26 ~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~i 77 (281)
T PF06454_consen 26 GLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANLVRAI 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHHHHeE
Confidence 34456666666666666655 22222233332 35556666666666665555
No 44
>KOG4349|consensus
Probab=46.72 E-value=1.2e+02 Score=22.48 Aligned_cols=76 Identities=14% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccchhhhhhHHHHHH
Q psy3090 87 FIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINA 164 (326)
Q Consensus 87 ~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 164 (326)
.++-+..-++.+.+++|+|--|--.-.+++---+.-+..++.. ..+............+.+.|...+..+..+..+
T Consensus 58 ~fih~~A~ilalFTLRkHkygrF~si~iliMgfi~P~~~Gi~t--S~viA~~~~As~~~ms~~y~~i~G~~QT~~i~v 133 (143)
T KOG4349|consen 58 MFIHLGATILALFTLRKHKYGRFISIPILIMGFIIPFVFGIPT--SMVLALAMYASKNAVSTWYCAIMGIIQTLLIFV 133 (143)
T ss_pred HHHHhhHHHHHHHHhhcCccceeeehHHHHHHHHHHHHhcchH--HHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence 3455566677788888877666322122222222222222211 111111111144455667777777665554433
No 45
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=39.65 E-value=31 Score=21.61 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhheee
Q psy3090 79 GTIFQSIIFIVGLLGNIMVVSVVYK 103 (326)
Q Consensus 79 ~~~~~~~i~i~gi~gN~~vl~v~~~ 103 (326)
..++.+++.+--++||+.++---.+
T Consensus 4 ~~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhcc
Confidence 3455566667778899998854433
No 46
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=39.08 E-value=72 Score=26.50 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=17.5
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHH
Q psy3090 147 GNYGCKMSVFLQYLGINASSLNLIAFTV 174 (326)
Q Consensus 147 ~~~~C~~~~~~~~~~~~~s~~~l~~isi 174 (326)
++..|....+....+.......+.+=+.
T Consensus 52 s~~~C~~r~~~~~l~f~l~~~~ll~K~~ 79 (238)
T PF00003_consen 52 SDILCTLRRWLFSLGFTLIFSALLAKTW 79 (238)
T ss_pred CCcEEEEeeeeeeeehHhhhhHHHHhhh
Confidence 4678998887766655555555554444
No 47
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.78 E-value=99 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=17.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhccccc
Q psy3090 246 IIVFYVIPLALSCLLYILIAHALLSSKSMK 275 (326)
Q Consensus 246 ~~~~~~lp~~ii~~~y~~I~~~l~~~~~~~ 275 (326)
.++..++.+.+..+.-..|+.++++-+.++
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555666677777777655433
No 48
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.99 E-value=51 Score=21.81 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred HhHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcccc
Q psy3090 241 YFFTDIIVFYVIPLALSCL-LYILIAHALLSSKSM 274 (326)
Q Consensus 241 ~~~~~~~~~~~lp~~ii~~-~y~~I~~~l~~~~~~ 274 (326)
|.++..++..+.|+.++.. +..++.+.+.+..++
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667788877754 566666666555443
No 49
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=27.62 E-value=3.9e+02 Score=23.41 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhHhhhhheeecCCCCChhHHHHHHH-HHHHHHHHHhhhhHHHHHhhhcccccccccccc
Q psy3090 82 FQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSL-SIADLMVLIAAVPNELVSYYQEKYTWLWGNYGC 151 (326)
Q Consensus 82 ~~~~i~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~L-ai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~~C 151 (326)
.++.+.++|++.|.+..+.+.+.+. +..|.=-..| +++|.+..+..+...+.... .+|..-+..+
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~---~~w~~~Dpi~ 191 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRF---TGWSWLDPIL 191 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCccchHH
Confidence 3567889999999999998887622 1223223333 34899988876655555555 4555444443
No 50
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=26.45 E-value=1.2e+02 Score=18.95 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccc
Q psy3090 251 VIPLALSCLLYILIAHALLSSKSMKH 276 (326)
Q Consensus 251 ~lp~~ii~~~y~~I~~~l~~~~~~~~ 276 (326)
++.+.+.++.|..|+..-|+.++.++
T Consensus 6 ~~ti~lvv~LYgY~yhLYrsek~G~r 31 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRSQKKGER 31 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccc
Confidence 44455556667777766655555443
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.91 E-value=48 Score=24.66 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3090 77 IIGTIFQSIIFIVGLL 92 (326)
Q Consensus 77 ~~~~~~~~~i~i~gi~ 92 (326)
+..+++-.+.+++|++
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 3444444444444444
No 52
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.38 E-value=38 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy3090 250 YVIPLALSCLLYILIAHALLSSKSMKH 276 (326)
Q Consensus 250 ~~lp~~ii~~~y~~I~~~l~~~~~~~~ 276 (326)
++.+++++.++|..++|--+|+.+.++
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~ 38 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQ 38 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 344455567778888877666554443
No 53
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.57 E-value=2.6e+02 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q psy3090 161 GINASSLNLIAFTVERYIAICKP 183 (326)
Q Consensus 161 ~~~~s~~~l~~isidRy~~i~~P 183 (326)
....-+|.++.+.+||++.....
T Consensus 49 i~~glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 49 IPFGLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 33446788999999999987754
No 54
>KOG3577|consensus
Probab=24.34 E-value=2.7e+02 Score=26.96 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=57.2
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHhhHHhhhcccccCCc
Q psy3090 146 WGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPF 225 (326)
Q Consensus 146 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~~~~~~~~~~~~~~~~ 225 (326)
.....|.....+.+++..++...-..+++..+.+.-.+-.... ..++........|..+..-.+..+.....+. +..
T Consensus 305 ~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~e~--~e~~~~~fh~~aw~~p~~~ti~~l~~~~v~~-~~~ 381 (556)
T KOG3577|consen 305 LENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGEEA--IEAKSSYFHLLAWGLPSVQTILILALNKVDG-DEL 381 (556)
T ss_pred CCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccccc--cccccceeeehhcCCchHHHHHHHHHHHhcc-cce
Confidence 3456788888777777777666777778888877754322222 3344556677789888888877777544444 555
Q ss_pred ceeecccCCcc
Q psy3090 226 RETCDFKLPRS 236 (326)
Q Consensus 226 ~~~C~~~~~~~ 236 (326)
.+.|.....+.
T Consensus 382 ~giC~vG~~~~ 392 (556)
T KOG3577|consen 382 SGICFVGNSNP 392 (556)
T ss_pred eEEEecCCCCc
Confidence 67787654433
No 55
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=22.78 E-value=1.3e+02 Score=20.24 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHHHHhHhhhhheeecCCCCChhHHHHHHHHHHHHHHHHhhhhH
Q psy3090 87 FIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPN 132 (326)
Q Consensus 87 ~i~gi~gN~~vl~v~~~~~~l~~~~~~~l~~Lai~Dll~~l~~~p~ 132 (326)
.+.|+++=...+-++..+.+.++-.++-..|-|++-++....--|+
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~ 49 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPM 49 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcH
Confidence 4556666666677777777778888888888899988887755454
No 56
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=22.41 E-value=1.4e+02 Score=16.73 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy3090 78 IGTIFQSIIFIVGLLGN 94 (326)
Q Consensus 78 ~~~~~~~~i~i~gi~gN 94 (326)
...++++.++++|.+.|
T Consensus 10 ~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 10 TVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhccccCC
Confidence 44556667777887776
No 57
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.87 E-value=1.9e+02 Score=17.28 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy3090 255 ALSCLLYILIAHALLSS 271 (326)
Q Consensus 255 ~ii~~~y~~I~~~l~~~ 271 (326)
+.+++....+++..+++
T Consensus 17 ~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 33333344444444433
No 58
>KOG4220|consensus
Probab=21.04 E-value=12 Score=33.94 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=19.9
Q ss_pred cccceeeeeeE-EehhHHHHhhhccccc
Q psy3090 299 SSRAQVSVPCL-VHFPFVLHYLVHLPIV 325 (326)
Q Consensus 299 ~~~~~~~~~~~-v~i~f~i~~~~~~p~~ 325 (326)
.++|++++++. |.+.|+++|.|--.|+
T Consensus 410 ~rErKAAkTLsAILlAFIiTWtPYNImV 437 (503)
T KOG4220|consen 410 VRERKAAKTLSAILLAFILTWTPYNIMV 437 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccceeee
Confidence 45566666665 8889999999865554
No 59
>KOG4289|consensus
Probab=20.33 E-value=3.4e+02 Score=29.67 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=38.6
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH
Q psy3090 147 GNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYS 210 (326)
Q Consensus 147 ~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~i~~~wi~s~~~~ 210 (326)
+++.|.+...+..+...+....+.+-++.-|.+...-. .....+...++.|.+..++.
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v------~tg~mrfy~~vGwgvPa~it 2279 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENV------DTGPMRFYYLVGWGVPALIT 2279 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------CCCceeEEEEeecchhhhee
Confidence 67899999998888888888788888888887776521 22222233345676655543
Done!