RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3090
(326 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 124 bits (314), Expect = 6e-34
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 9/224 (4%)
Query: 100 VVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQY 159
V+ + + +RTPTN +L++L++ADL+ L+ P YY W +G+ CK+ FL
Sbjct: 2 VILRTKKLRTPTNIFLLNLAVADLLFLLTLPP--WALYYLVGGDWPFGDALCKLVGFLFV 59
Query: 160 LGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTET 219
+ AS L L A +++RY+AI P+ RI T RA+ +++ VW+ A++ S P L +
Sbjct: 60 VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL 119
Query: 220 RQI-DPFRETCDFKLP-RSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHK 277
R + + TC P S Y ++ +V+PL + + Y LI L K
Sbjct: 120 RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTL-----RKRA 174
Query: 278 GRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVH 321
S + V V L P+ + L+
Sbjct: 175 RSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLD 218
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 75.2 bits (185), Expect = 3e-15
Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 6/200 (3%)
Query: 84 SIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYT 143
S IF GL+GNI+V+ V+ K + +TP + YL++L+++DL + + +P ++ YY +
Sbjct: 48 STIFFFGLVGNIIVIYVLTKTKI-KTPMDIYLLNLAVSDL-LFVMTLPFQI--YYYILFQ 103
Query: 144 WLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVW 203
W +G + CK+ L Y+G S + +V+RYIAI P+ +++I T+ + + +W
Sbjct: 104 WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIW 163
Query: 204 IFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVF--YVIPLALSCLLY 261
I ++I ++P LF+ T++ C F ++ F I +IPL + Y
Sbjct: 164 IISIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCY 223
Query: 262 ILIAHALLSSKSMKHKGRLI 281
I L K + I
Sbjct: 224 SKILITLKGINKSKKNKKAI 243
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 64.3 bits (156), Expect = 2e-11
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 81 IFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQE 140
IF IIFI+GL GN ++ +++ + ++T T+ Y+ +L+I+DL+ +I + Y E
Sbjct: 103 IFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI----DFPFIIYNE 157
Query: 141 KYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILI 200
W++G++ CK+ Y+G ++ + +++RY AI P+ + T N + I
Sbjct: 158 FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCI 217
Query: 201 YVWIFAVIYSSPWLFLTETRQI 222
WI ++I +SP F+ E I
Sbjct: 218 ISWILSLIITSPAYFIFEASNI 239
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 50.3 bits (120), Expect = 5e-07
Identities = 61/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 52 TDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPT 111
T ++D + EM + + +F ++FI GL+GN++V++V+ R M
Sbjct: 4 TVVVDNYSYYFEEECDFEMVNSDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFV-V 62
Query: 112 NCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIA 171
+ YL +++++DLM L+ + P + + E W++G + CK+ + + ++G ++ +
Sbjct: 63 DVYLFNIAMSDLM-LVFSFPFIIHNDLNE---WIFGEFMCKLVLGVYFVGFFSNMFFVTL 118
Query: 172 FTVERYIAICKPMLAHRICTLNRARKILIYV--WIFAVIYSSPWLFLTETRQIDPFRETC 229
+++RYI + A +I + + +L+ V W+ +VI S P + L D ++
Sbjct: 119 ISIDRYILVVN---ATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCI 175
Query: 230 --DFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTM 287
D+ S+ + F I VIPL + Y I + L + K+ K+K R I +T+
Sbjct: 176 FNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-KNKTRSIKIILTV 234
Query: 288 VSVT 291
V+ T
Sbjct: 235 VTFT 238
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 41.8 bits (99), Expect = 2e-04
Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 85 IIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIA----AVPNELVSYYQE 140
+I + G++ N ++ + K+ S++ + +I++ ++ VP ++
Sbjct: 2 LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVP---MTLLDL 58
Query: 141 KYTWLWGNYGCKMSVFLQYLGINA---SSLNLIAFTVERYIAICKPMLAHRICTLNRARK 197
+ N S + + S L + ++ R+ A+ P +I ++ +
Sbjct: 59 SFLPELLN-----SHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKI 113
Query: 198 ILIYVWIFAVIYSSPWLF 215
I+ ++WI A+I S+ + F
Sbjct: 114 IITFIWIIAIIISTLFYF 131
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 35.6 bits (83), Expect = 0.019
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 87 FIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLW 146
++G+ GN++++ + +K + +R+ + + +ADL+ L + ++ + + T
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLT--- 57
Query: 147 GNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFA 206
C + + G A S ++ ++R IA+ P+ + + K L IF
Sbjct: 58 -RNECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSS----SKYLFIQLIFP 112
Query: 207 VIYSS 211
VIYSS
Sbjct: 113 VIYSS 117
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 30.8 bits (70), Expect = 1.0
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 80 TIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAV 130
T+FQS F+VGLL + +V+ IR+ R P ++ S + LM++ V
Sbjct: 804 TLFQSGWFVVGLLSQTL---IVHMIRTRRIP---FIQSRAAWPLMIMTLIV 848
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 30.3 bits (69), Expect = 1.3
Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 14/182 (7%)
Query: 81 IFQSIIFIVGLLGNIMVVSVVYKIRSMRT-PTNCYLVSLSIADLMVLIAAVPNELVSYYQ 139
+ I+ I+G + NI + ++ + +SMRT N ++ ++I D++ ++ + N + +
Sbjct: 1 KVEFILSIIGFIINIFHLIILTR-KSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFII 59
Query: 140 E-------KYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPM--LAHRIC 190
+ LQ + S+ + + R + + PM ++
Sbjct: 60 SYENSECIPPDSYLKVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLS 119
Query: 191 TLNRARKILIYVWIFAVIYSSPWLF---LTETRQIDPFRETCDFKLPRSYYLVYFFTDII 247
I+I V+I ++ +S + F + E I C P Y
Sbjct: 120 KPKFGLIIIIIVFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPRYVLVLSE 179
Query: 248 VF 249
+F
Sbjct: 180 LF 181
>gnl|CDD|177573 PHA03275, PHA03275, envelope glycoprotein K; Provisional.
Length = 340
Score = 29.0 bits (65), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 197 KILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVY 241
K++I W+ +Y + E R PFR C+F P SY L Y
Sbjct: 122 KMIIGAWL---VYIAFLQLRQERRMFGPFRNQCEFLSPTSYTLNY 163
>gnl|CDD|234470 TIGR04099, biosn_Pnap_2097, probable biosynthetic protein,
Pnap_2097 family. Radical SAM family TIGR04043 is a
marker for a widespread eight-gene probable biosynthetic
cluster of unknown function. This protein family occurs
only in the context of TIGR04043 member-containing
biosynthetic clusters, although in a minority of such
clusters. This protein family belongs to the TIGR04098
domain family, which also includes N-terminal domains of
several probable polyketide synthases. A role in
biosynthetic processes is suspected.
Length = 259
Score = 28.5 bits (64), Expect = 4.4
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 268 LLSSKSMKHKGRLIHSNVTMVS--VTHRHTKNNSSRAQVSVPCLVH 311
S ++ +GR + V M+S V +N S A+V++
Sbjct: 84 HASRHRLRVRGRPV-GEVEMLSAFVRREVEGSNRSIARVALDGRPP 128
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase.
Length = 374
Score = 28.6 bits (64), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 281 IHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPF 314
I SN SV HR + NS++ ++SV L PF
Sbjct: 292 IFSNGRYKSVLHR-VRVNSTKPRISVASLHSLPF 324
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. Carbamoyl-phosphate synthase (CPSase)
catalyzes the first committed step in pyrimidine,
arginine, and urea biosynthesis. In general, it is a
glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II
in eukaryotes. An exception is the mammalian
mitochondrial urea-cycle form, CPSase I, in which the
glutamine amidotransferase domain active site Cys on the
small subunit has been lost, and the enzyme is
ammonia-dependent. In both CPSase I and the closely
related, glutamine-dependent CPSase III (allosterically
activated by acetyl-glutamate) demonstrated in some
other vertebrates, the small and large chain regions are
fused in a single polypeptide chain. This model
represents the large chain of glutamine-hydrolysing
carbamoyl-phosphate synthases, or the corresponding
regions of larger, multifunctional proteins, as found in
all domains of life, and CPSase I forms are considered
exceptions within the family. In several thermophilic
species (Methanobacterium thermoautotrophicum,
Methanococcus jannaschii, Aquifex aeolicus), the large
subunit appears split, at different points, into two
separate genes [Purines, pyrimidines, nucleosides, and
nucleotides, Pyrimidine ribonucleotide biosynthesis].
Length = 1050
Score = 28.8 bits (65), Expect = 5.1
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 18/78 (23%)
Query: 21 ITLNNN---VSIN-DTFDFLYFDHDLNLTDCMANFTDLIDLQEL---------QCNQTIV 67
I +N N VS + DT D LYF+ L D M ++I+L++ Q +
Sbjct: 592 IMINYNPETVSTDYDTSDRLYFE-PLTFEDVM----NIIELEKPEGVIVQFGGQTPLNLA 646
Query: 68 KEMFSLEYRIIGTIFQSI 85
K + I+GT +SI
Sbjct: 647 KALEEAGVPILGTSPESI 664
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.140 0.431
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,431,758
Number of extensions: 1586426
Number of successful extensions: 2097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2076
Number of HSP's successfully gapped: 58
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.5 bits)