RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3090
(326 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 149 bits (379), Expect = 1e-42
Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 72 SLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVP 131
++ ++I + ++GN++V+ ++ + MRT TN +LV+L+ A+ +
Sbjct: 28 PAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 87
Query: 132 NELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICT 191
W +G + CK F + AS ++ A +RY+AI P+ +
Sbjct: 88 VNFTYAVHN--EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL--S 143
Query: 192 LNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP----RSYYLVYFFTDII 247
+ ++ +W+ A++ + P + + T + P R C + P + Y VY +
Sbjct: 144 ATATKVVICVIWVLALLLAFPQGYYSTTETM-PSRVVCMIEWPEHPNKIYEKVYHICVTV 202
Query: 248 VFYVIPLALSCLLYILIAHALLSSKSM 274
+ Y +PL + Y ++ L +S+
Sbjct: 203 LIYFLPLLVIGYAYTVVGITLWASEIP 229
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 145 bits (368), Expect = 2e-40
Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 7/209 (3%)
Query: 71 FSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAV 130
L ++ + + GLLGN +V+ V+ + M+T TN Y+ +L++AD +VL+ +
Sbjct: 120 LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-L 178
Query: 131 PNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRIC 190
P + W +GN CK + + Y + S+ L A +V+RY+AIC P+ A +
Sbjct: 179 PFQGTDILLG--FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVR 236
Query: 191 TLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRS---YYLVYFFTDII 247
T ++A+ + + +W A + P + + D C ++P + V+ +
Sbjct: 237 TSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDE-EIECLVEIPTPQDYWGPVFAICIFL 295
Query: 248 VFYVIPLALSCLLYILIAHALLSSKSMKH 276
+++P+ + + Y L+ L + +
Sbjct: 296 FSFIVPVLVISVCYSLMIRRLRGVRLLSG 324
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 133 bits (336), Expect = 2e-36
Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 24/232 (10%)
Query: 75 YRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNEL 134
+ ++ ++ ++G N + + V + + +RTP N L++L++ADL ++ L
Sbjct: 38 FSMLAAYM-FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL 96
Query: 135 VSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNR 194
+ +++G GC + F LG + +L+ +ERY+ +CKPM R N
Sbjct: 97 YTSLHG--YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENH 153
Query: 195 ARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP--------RSYYLVYFFTDI 246
A + + W+ A+ ++P L + + +C S+ + F
Sbjct: 154 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMF---- 209
Query: 247 IVFYVIPLALSCLLYILIAHAL--------LSSKSMKHKGRLIHSNVTMVSV 290
+V ++IPL + Y + + S+ + K + + + MV
Sbjct: 210 VVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIA 261
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 132 bits (333), Expect = 3e-35
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 76 RIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELV 135
I SI+ +VGL GN +V+ V+ + M+T TN Y+ +L++AD + +P
Sbjct: 17 AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LP--FQ 73
Query: 136 SYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRA 195
S TW +GN CK+ + + Y + S L +V+RYIA+C P+ A T A
Sbjct: 74 SVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNA 133
Query: 196 RKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRS---YYLVYFFTDIIVFYVI 252
+ + + WI + P +F+ T+ C + + I +++
Sbjct: 134 KIVNVCNWILSSAIGLPVMFMATTKYRQG-SIDCTLTFSHPTWYWENLLKICVFIFAFIM 192
Query: 253 PLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSV 290
P+ + + Y L+ L S +++ R+ +
Sbjct: 193 PVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYK 230
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 129 bits (325), Expect = 3e-34
Identities = 49/234 (20%), Positives = 105/234 (44%), Gaps = 19/234 (8%)
Query: 75 YRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADL-MVLIAAVPNE 133
Y +G I I+G GN +V+ + K +S++TP N ++++L+ +D L+ P
Sbjct: 34 YYSLGIFI-GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM 92
Query: 134 LVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLN 193
+S + + W++G CK+ F+ + S + + +++RY I +PM A + +
Sbjct: 93 TISCFLK--KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHR 150
Query: 194 RARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLP------RSYYLVYFFTDII 247
RA ++I+VW+++V+++ +F ++ C F RS L F I
Sbjct: 151 RAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMF----I 206
Query: 248 VFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSR 301
+ + P+ + Y I ++ H+ + + + R + ++
Sbjct: 207 LGFFGPILIIFFCYFNIVMSV-----SNHEKEMAAMAKRLNAKELRKAQAGANA 255
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 125 bits (315), Expect = 7e-33
Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 16/265 (6%)
Query: 63 NQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIAD 122
N + + + + + +V ++GNI+V+ + R ++T N +L SL+ AD
Sbjct: 10 NSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACAD 69
Query: 123 LMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICK 182
L++ + ++ L + Y W G C + + L Y+ NAS +NL+ + +RY + K
Sbjct: 70 LIIGVFSMN--LYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTK 127
Query: 183 PMLAHRICTLNRARKILIYVWIFAVIYSSP----WLFLTETRQIDPFRETCDFKLPRSYY 238
P+ T A ++ W+ + I +P W F+ R ++ F +
Sbjct: 128 PLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVT 187
Query: 239 LVYFFTDIIVFYVIPLALSCLLYILIAHAL------LSSKSMKHKGRLIHSNVTMVSVTH 292
T I FY +P+ + +LY I+ A + RL T T
Sbjct: 188 F---GTAIAAFY-LPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTI 243
Query: 293 RHTKNNSSRAQVSVPCLVHFPFVLH 317
+ ++ +
Sbjct: 244 GIGHLLTKSPSLNAAKSELDKAIGR 268
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 125 bits (316), Expect = 1e-32
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 21/270 (7%)
Query: 20 MITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIG 79
+SI + ++ + D + C + +I
Sbjct: 7 DAGAPEGISIYTSDNYTE-----------EMGSGDYDSMKEPCFREENANF----NKIFL 51
Query: 80 TIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQ 139
SIIF+ G++GN +V+ V+ + +R+ T+ Y + LS+ADL+ +I +P V
Sbjct: 52 PTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVA 110
Query: 140 EKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKIL 199
W +GN+ CK + + + +S L +++RY+AI + R L + +
Sbjct: 111 N---WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVY 167
Query: 200 IYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYF-FTDIIVFYVIPLALSC 258
+ VWI A++ + P + D R CD P ++V F F I+V ++P +
Sbjct: 168 VGVWIPALLLTIPDFIFANVSEADD-RYICDRFYPNDLWVVVFQFQHIMVGLILPGIVIL 226
Query: 259 LLYILIAHALLSSKSMKHKGRLIHSNVTMV 288
Y +I L S S + I + +
Sbjct: 227 SCYCIIISKLSHSGSNIFEMLRIDEGLRLK 256
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 122 bits (307), Expect = 1e-31
Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 77 IIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVS 136
+ + I ++ +LGN++V V+ +++ TN ++VSL+ AD+ V + A+P +
Sbjct: 22 SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP---FA 78
Query: 137 YYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRAR 196
+ +GC + +S +L+A ++RYIAI P+ + + T RA+
Sbjct: 79 ITISTG-FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAK 137
Query: 197 KILIYVWIFAVIYSSPWLF-----------LTETRQIDPFRETCDFKLPRSYYLVYFFTD 245
I+ W+ + + ++ + C F+ + +F
Sbjct: 138 GIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNF 197
Query: 246 IIVFYVIPLALSCLLYILI----------AHALLSSKSMKHKGRLIHSNVTMVSVTHRHT 295
+PL L +Y+ I L + ++ K + + H T
Sbjct: 198 FACVL-VPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 256
Query: 296 KNNSSRAQVS 305
K+ S A S
Sbjct: 257 KSPSLNAAKS 266
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 120 bits (302), Expect = 4e-31
Identities = 47/259 (18%), Positives = 98/259 (37%), Gaps = 22/259 (8%)
Query: 76 RIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELV 135
+ + I ++ +LGN++V V+ +++ TN ++VSL+ AD+ V + A+P
Sbjct: 31 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP---F 87
Query: 136 SYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRA 195
+ + +GC + +S +L+A ++RYIAI P+ + + T RA
Sbjct: 88 AITISTG-FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 146
Query: 196 RKILIYVWIFAVIYSSPWLF-----------LTETRQIDPFRETCDFKLPRSYYLVYFFT 244
+ I+ W+ + + ++ + C F+ + +F
Sbjct: 147 KGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN 206
Query: 245 DIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQV 304
+PL L +Y+ I A + + + N ++ + + + AQV
Sbjct: 207 FFACVL-VPLLLMLGVYLRIFLAA------RRQLADLEDNWETLNDNLKVIEKADNAAQV 259
Query: 305 SVPCLVHFPFVLHYLVHLP 323
L P
Sbjct: 260 KDALTKMRAAALDAQKATP 278
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 120 bits (303), Expect = 5e-31
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 31/265 (11%)
Query: 62 CNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIA 121
V + + + I S+I + + GN++V++ + K ++T TN ++ SL+ A
Sbjct: 26 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 85
Query: 122 DLMVLIAAVP----NELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERY 177
DL++ +A VP + L+ W +GN+ C+ + L + AS L V+RY
Sbjct: 86 DLVMGLAVVPFGAAHILMKM------WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 139
Query: 178 IAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFL-------TETRQIDPFRETCD 230
AI P + T N+AR I++ VWI + + S + + E CD
Sbjct: 140 FAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCD 199
Query: 231 FKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILI----------AHALLSSKSMKHKGRL 280
F ++Y + + I+ FY +PL + +Y + L + ++ K
Sbjct: 200 FFTNQAYAI---ASSIVSFY-VPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK 255
Query: 281 IHSNVTMVSVTHRHTKNNSSRAQVS 305
+ + H TK+ S A S
Sbjct: 256 DTEGYYTIGIGHLLTKSPSLNAAKS 280
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 118 bits (297), Expect = 2e-30
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 10/198 (5%)
Query: 71 FSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAV 130
+ + + S I +V + N++V+ V R + T N Y+VSLS+ADL+V +
Sbjct: 3 MASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVM 62
Query: 131 PNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRIC 190
P + Y W G C + + Y+ AS ++ ++RY ++ +P+ +
Sbjct: 63 P--MNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120
Query: 191 TLNRARKILIYVWIFAVIYSSP----WLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDI 246
T RA ++ W + ++ P F+ +T + DF + + T I
Sbjct: 121 TKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKV---MTAI 177
Query: 247 IVFYVIPLALSCLLYILI 264
I FY +P L Y I
Sbjct: 178 INFY-LPTLLMLWFYAKI 194
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 119 bits (299), Expect = 3e-30
Identities = 59/276 (21%), Positives = 106/276 (38%), Gaps = 20/276 (7%)
Query: 62 CNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIA 121
T + + I S+I + + GN++V++ + K ++T TN ++ SL+ A
Sbjct: 168 RTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 227
Query: 122 DLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAIC 181
DL++ +A VP + TW +GN+ C+ + L + AS L V+RY AI
Sbjct: 228 DLVMGLAVVPFGAA--HILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 285
Query: 182 KPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFL-------TETRQIDPFRETCDFKLP 234
P + T N+AR I++ VWI + + S + + E CDF
Sbjct: 286 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 345
Query: 235 RSYYLVYFFTDIIVFYVIPLALSCLLYILI-------AHALLSSKSMKHKGRLIHSNVTM 287
++Y + + FY +PL + +Y + + S+ H L
Sbjct: 346 QAYAIASSI---VSFY-VPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDG 401
Query: 288 VSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLVHLP 323
+ + + + L LP
Sbjct: 402 RTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP 437
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 112 bits (283), Expect = 4e-29
Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 15/260 (5%)
Query: 69 EMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIA 128
E+ S ++ ++ +++ ++ + GN++V++ + + ++T TN ++ SL+ ADL+V +
Sbjct: 4 ELLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLL 63
Query: 129 AVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHR 188
VP + TWLWG++ C++ L L + AS L ++RY+AI P
Sbjct: 64 VVPFGAT--LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
Query: 189 ICTLNRARKILIYVWIFAVIYSSPWLFL-------TETRQIDPFRETCDFKLPRSYYLVY 241
+ T RA+ I+ VW + + S + + + + CDF R+Y +
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIAS 181
Query: 242 FFTDIIVFYVIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSR 301
I FY IPL + + + + + ++ M+ H+ K
Sbjct: 182 SI---ISFY-IPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGII 237
Query: 302 AQVSVPCLVHFPFVLHYLVH 321
V C PF L +V+
Sbjct: 238 MGVFTLCW--LPFFLVNIVN 255
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 112 bits (282), Expect = 3e-28
Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 18/281 (6%)
Query: 37 YFDHDLNLTDCMANFTDLIDLQELQCNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIM 96
Y D D ++ + ++ N T + + + + GN +
Sbjct: 2 YKDDDDGAPASLSQLSSHLNYTCGAENST---GASQARPHAYYALSYCALILAIVFGNGL 58
Query: 97 VVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVF 156
V V K R+++T TN +VSL++ADL+V +P + W + C + V
Sbjct: 59 VCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV-WNFSRICCDVFVT 117
Query: 157 LQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLNRARKILIY---VWIFAVIYSSPW 213
L + AS NL A +++RY A+ P+ + R++ + VW+ A S P
Sbjct: 118 LDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPL 177
Query: 214 LFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIPLALSCLLYILIAHALLSSKS 273
LF C P +++Y + ++ FY +P ++ L+Y I L K
Sbjct: 178 LF---GFNTTGDPTVCSISNP--DFVIY--SSVVSFY-LPFGVTVLVYARIYVVL---KQ 226
Query: 274 MKHKGRLIHSNVTMVSVTHRHTKNNSSRAQVSVPCLVHFPF 314
+ K + + L P
Sbjct: 227 RRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS 267
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 106 bits (266), Expect = 6e-26
Identities = 45/241 (18%), Positives = 87/241 (36%), Gaps = 19/241 (7%)
Query: 74 EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNE 133
++ +F +I +L NI V+ ++K + P ++ +L+++DL+ +A N
Sbjct: 62 SIKLTSVVF-ILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL 120
Query: 134 LVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLN 193
L T+ + ++ ++AS +L+A +ERYI + K H
Sbjct: 121 L---LSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKM-KLHNGSNNF 176
Query: 194 RARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCDFKLPRSYYLVYFFTDIIVFYVIP 253
R ++ W+ ++I + T Y+ Y VF +
Sbjct: 177 RLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLP----LYHKHYILFCTTVFT-LL 231
Query: 254 LALSCLLYILIAH---------ALLSSKSMKHKGRLIHSNVTMVSVTHRHTKNNSSRAQV 304
L +LY I L + ++ K + + H TK+ S A
Sbjct: 232 LLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK 291
Query: 305 S 305
S
Sbjct: 292 S 292
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 4e-04
Identities = 50/308 (16%), Positives = 92/308 (29%), Gaps = 75/308 (24%)
Query: 11 KQQIVEQVTMITLNNNVSINDTFDF-LYFDHDLNLTDCMANFTDLIDLQELQCNQTIVKE 69
K + V + + DF +++ LNL +C + T L LQ+L Q +
Sbjct: 163 KTWVALDVC-----LSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKL-LYQ--IDP 211
Query: 70 MFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLV-----SLSIADLM 124
++ I I I L ++ S Y+ NC LV + +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYE--------NCLLVLLNVQNAKAWNAF 262
Query: 125 -----VLI----AAVPNELVSYYQEKYTWLWGNYGC----KMSVFLQYLGINASSLNLIA 171
+L+ V + L + + + S+ L+YL L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 172 FTVE-RYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFRETCD 230
T R ++I + + T + + + T I+ +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCD---------------KLTTIIESSLNVLE 367
Query: 231 FKLPRSYY--LVYFFTDIIVFYVIPLALSCLLY--------ILIAHALLSSKSM--KHKG 278
R + L F IP L L++ +++ + L S+ K
Sbjct: 368 PAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPK 422
Query: 279 RL---IHS 283
I S
Sbjct: 423 ESTISIPS 430
Score = 29.8 bits (66), Expect = 1.5
Identities = 38/275 (13%), Positives = 81/275 (29%), Gaps = 61/275 (22%)
Query: 1 MQTNHSHKEYKQQIVEQVTMITLNNNVSINDTFDFLY-------FDHDLNLTDCMANFTD 53
M +Y+ + + V +N D D DH + D ++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 54 LIDLQELQCNQTI---VKEMFSLEYRIIGTIFQS---------IIFI--VGLLGNIMVVS 99
L + + + V+E+ + Y+ + + ++ ++I L N V
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 100 V---VYKIRSMRTPTNCYLVSLSIADL-----M------VLIAAV--PNELVSYYQEKYT 143
V +++ L+ L A + + V ++ K
Sbjct: 127 AKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 144 WL-WGNYGCKMSVF--LQYL----GINASSLNLIAFTVERYIAICKPMLAHRICTLNRAR 196
WL N +V LQ L N +S + + ++ I + L + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 197 KILIY--VWIFAVIYSSPWLFLTETRQIDPFRETC 229
+L+ V + + F +C
Sbjct: 246 CLLVLLNVQ-------NAKA-------WNAFNLSC 266
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 35.3 bits (80), Expect = 0.027
Identities = 19/191 (9%), Positives = 50/191 (26%), Gaps = 4/191 (2%)
Query: 49 ANFTDLIDLQELQ--CNQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRS 106
++D + + + K FS + ++I + G + + +S + +
Sbjct: 53 PELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFCGYA 112
Query: 107 MRTPTNCYLVSLSIADLMVLIAAVPNELVSYYQEKYTWLWGNYGCKMSVFLQYLGINASS 166
P SL L L +A+ S Y + +G ++
Sbjct: 113 GFGPEYEITQSLVFLLLATLFSALAGLPWSLYNTFV--IEEKHGFNQQTLGFFMKDAIKK 170
Query: 167 LNLIAFTVERYIAICKPMLAHRICTLNRARKILIYVWIFAVIYSSPWLFLTETRQIDPFR 226
+ + ++ ++ + V ++ + P
Sbjct: 171 FVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLP 230
Query: 227 ETCDFKLPRSY 237
E +
Sbjct: 231 EGKLKEEIEVM 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.13
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 39/145 (26%)
Query: 3 TNHSHKEYKQQIVEQVTMITLNNNVSINDTFDFLYFDHDLNLTDCMANFTDLIDLQELQC 62
T H E ++I E + + V + ++ + + + T F ++
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRS----EKGLL 1726
Query: 63 NQTIVKEMFSLEYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSM-RTPTNCYLV--SL- 118
+ T ++ T Q + ++ + ++S P + SL
Sbjct: 1727 SAT--------QF----T--QPALTLME-------KAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 119 ------SIADLMVLIAAVPNELVSY 137
S+AD+M + + V E+V Y
Sbjct: 1766 EYAALASLADVMSIESLV--EVVFY 1788
Score = 31.2 bits (70), Expect = 0.62
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 28/114 (24%)
Query: 120 IADLMVLIAAVPNELVS-------YYQEKY---TWLWGNYGCKMSVFLQYLGINASSLNL 169
+ DL+ A +EL+ + + WL N YL S L
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDK--DYLLSIPISCPL 240
Query: 170 IAFT-VERYIAICK-----P--MLAHRICTLNRARKILIYVWIFAVIYSSP--W 213
I + Y+ K P + ++ ++ ++ AV + W
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-----AVAIAETDSW 289
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 27.8 bits (62), Expect = 0.48
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 164 ASSLNLIAFTVERYIAICKPMLAHRICTLNR 194
+S ++L A +++RY +I + + + T R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 27.9 bits (63), Expect = 5.7
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 179 AICKPMLAH------RICTLNRARKILI----YVWIFAVIYSSP---WLFLTE 218
A L H ++ N +I +V+++ P + L+
Sbjct: 314 ANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSL 366
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.140 0.431
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,922,273
Number of extensions: 286640
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 32
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.2 bits)