RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3090
         (326 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 6/221 (2%)

Query: 74  EYRIIGTIFQSIIFIVGLLGNIMVVSVVYKIRSMRTPTNCYLVSLSIADLMVLIAAVPNE 133
           ++ ++      ++ ++G   N + + V  + + +RTP N  L++L++ADL ++       
Sbjct: 36  QFSMLAAYM-FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT-- 92

Query: 134 LVSYYQEKYTWLWGNYGCKMSVFLQYLGINASSLNLIAFTVERYIAICKPMLAHRICTLN 193
              Y      +++G  GC +  F   LG   +  +L+   +ERY+ +CKPM   R    +
Sbjct: 93  TTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENH 152

Query: 194 RARKILIYVWIFAVIYSSPWLFLTET---RQIDPFRETCDFKLPRSYYLVYFFTDIIVFY 250
               +     +     + P +  +                     +    +     +V +
Sbjct: 153 AIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF 212

Query: 251 VIPLALSCLLYILIAHALLSSKSMKHKGRLIHSNVTMVSVT 291
           +IPL +    Y  +   +  + + + +          V+  
Sbjct: 213 IIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRM 253


>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse
           (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
          Length = 68

 Score = 24.2 bits (53), Expect = 7.2
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)

Query: 115 LVSLSIADLMVLIAAVPNELVSYYQEKYTW 144
           LV    A         P  ++S+Y+E+ TW
Sbjct: 39  LVPAKEA-----NVKCPQVVISFYEERLTW 63


>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 24.8 bits (54), Expect = 8.9
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 288 VSVTHRHTKNNSSRAQVSVPCLVHFPFVLHYLV 320
           V    R+ K    + ++ V   V+   VL YL 
Sbjct: 14  VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLT 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,205,523
Number of extensions: 54745
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.9 bits)