BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3092
(347 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/360 (73%), Positives = 294/360 (81%), Gaps = 19/360 (5%)
Query: 1 MKPDTATLLVNFNS-----GGANSMSSFG-------SNNHSSSHNNGSSNSSIISPYPPN 48
MKPDTA LL+ S GG N+ SF S + SS +NGS SS PYPPN
Sbjct: 29 MKPDTACLLLGSGSFTPTGGGPNTPGSFCIGQSRVFSKSTGSSQSNGSWGSS---PYPPN 85
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRN 108
HPL GSKHLC+ICGDRA GKHYGVY CEGCKGFFK TVRKDLSYACRE +NCIIDKRQRN
Sbjct: 86 HPLSGSKHLCTICGDRACGKHYGVYCCEGCKGFFKWTVRKDLSYACREDKNCIIDKRQRN 145
Query: 109 RCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMK 168
RCQYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+ K
Sbjct: 146 RCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVECK 205
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
E + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA
Sbjct: 206 TE---HQVEFESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIA 262
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTEL CLR
Sbjct: 263 AFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLR 322
Query: 289 TIILFNPD-VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
++ILFNPD VRGLKS+Q VE+LREKVY +LEEYTR H +EPGRFAKLL LPSLRSI +
Sbjct: 323 SVILFNPDVVRGLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISL 382
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/349 (75%), Positives = 292/349 (83%), Gaps = 6/349 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCS 59
MKPDTA+L+ + + G +S G S+SSI YPPNHPL GSKHLCS
Sbjct: 24 MKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSI--QYPPNHPLSGSKHLCS 81
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCL
Sbjct: 82 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCL 141
Query: 120 NMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---PADQDI 176
MGMKREAVQEERQRTK NEVESTS +MPVERILEAE+RV+ K E + +
Sbjct: 142 TMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILEAEKRVEYKTENNMEFENTM 201
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
N QA NIC+AT+KQLFQLV+WAKHIPHFT+LPLEDQVLLLRAGWNELLIA+FSHRS+
Sbjct: 202 NNICQAANICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGI+LA G+T++R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR++ILFNPD
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VRGLKSQQ VEMLREKVY +LEEYTR H +EPGRFAKLLLRLP+LRSI
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSI 370
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/349 (74%), Positives = 292/349 (83%), Gaps = 6/349 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCS 59
MKPDTA+L+ + + G +S G S+SSI YPPNHPL GSKHLCS
Sbjct: 24 MKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSI--QYPPNHPLSGSKHLCS 81
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE +NCIIDKRQRNRCQYCRYQKCL
Sbjct: 82 ICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCL 141
Query: 120 NMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---PADQDI 176
MGMKREAVQEERQRTK NEVESTS +MPVERILEAE+RV+ K E + +
Sbjct: 142 TMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILEAEKRVEYKTENNMEFENTM 201
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
N QA NIC+AT+KQLFQLV+WAKHIPHFT+LPLEDQVLLLRAGWNELLIA+FSHRS+
Sbjct: 202 NNICQAANICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGI+LA G+T++R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR++ILFNPD
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VRGLKSQQ VEMLREKVY +LEEYTR H +EPGRFAKLLLRLP+LRSI
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSI 370
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/349 (74%), Positives = 292/349 (83%), Gaps = 6/349 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCS 59
MKPDTA+L+ + + G +S G S+SSI YPPNHPL GSKHLCS
Sbjct: 24 MKPDTASLISSGSFSPTGGGGGGGGGGPNSPTGGQGKSSSSI--QYPPNHPLSGSKHLCS 81
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE +NCIIDKRQRNRCQYCRYQKCL
Sbjct: 82 ICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQKCL 141
Query: 120 NMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---PADQDI 176
MGMKREAVQEERQRTK NEVESTS +MPVERILEAE+RV+ K E + +
Sbjct: 142 TMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILEAEKRVEYKTENNMEFENTM 201
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
N QA NIC+AT+KQLFQLV+WAKHIPHFT+LPLEDQVLLLRAGWNELLIA+FSHRS+
Sbjct: 202 NNICQAANICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGI+LA G+T++R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR++ILFNPD
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VRGLKSQQ VEMLREKVY +LEEYTR H +EPGRFAKLLLRLP+LRSI
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSI 370
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/348 (73%), Positives = 293/348 (84%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + ++PYPPNHPL GSKHL
Sbjct: 50 MKPDTASLINAGNFSPSGPNSPGSFNAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVEYKME---QQGN 226
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 286
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 287 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 346
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++PGRFAKLLLRLP++RSI
Sbjct: 347 RGLKSIQEVTLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSI 394
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/347 (74%), Positives = 296/347 (85%), Gaps = 8/347 (2%)
Query: 1 MKPDTATLLV-NFN-SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLC 58
MKPDTATLL NF+ +GG NS +SF + HSS N S+N ++ YPPNHPL GSKHLC
Sbjct: 47 MKPDTATLLGGNFSPNGGPNSPNSF-TMGHSSLIGNNSNNK--MASYPPNHPLSGSKHLC 103
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQ+CRY KC
Sbjct: 104 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQFCRYNKC 163
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN 178
L MGMKREAVQEERQRTKER+ EVES+ +MPVERILEAE+RV+ K E ++
Sbjct: 164 LAMGMKREAVQEERQRTKEREQGEVESSGAMQADMPVERILEAEKRVECKVENQNE---Y 220
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E NIC+AT+ QL+QLV+WAKHIPHF++LP+EDQVLLLRAGWNELLIA+FSHRS+ V+
Sbjct: 221 ENAVANICQATNTQLYQLVEWAKHIPHFSSLPIEDQVLLLRAGWNELLIAAFSHRSVEVR 280
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
DGI+L G+TV+R+SAH+AGVG IFDRVLTELV+KMR+M MD+TELGCLR+IILFNP+VR
Sbjct: 281 DGIVLGAGITVHRNSAHQAGVGTIFDRVLTELVAKMRDMNMDRTELGCLRSIILFNPEVR 340
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GLKS Q VE+LREKVY +LEEYTRV EEPGRFAKLLLRLP+LRSI
Sbjct: 341 GLKSGQEVELLREKVYAALEEYTRVTRPEEPGRFAKLLLRLPALRSI 387
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/382 (70%), Positives = 299/382 (78%), Gaps = 38/382 (9%)
Query: 1 MKPDTATLLVNFNS-----GGANSMSSFG-------SNNHSSSHNNGSSNSSIISPYPPN 48
MKPDTA LL+ S GG N+ SF S + SS +NGS SS PYPPN
Sbjct: 29 MKPDTACLLLGSGSFTPTGGGPNTPGSFCIGQSRVFSKSTGSSQSNGSWGSS---PYPPN 85
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRN 108
HPLCGSKHLC+ICGDRA GKHYGVY CEGCKGFFK TVRKDLSYACRE +NCIIDKRQRN
Sbjct: 86 HPLCGSKHLCTICGDRACGKHYGVYCCEGCKGFFKWTVRKDLSYACREDKNCIIDKRQRN 145
Query: 109 RCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMK 168
RCQYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+ K
Sbjct: 146 RCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVECK 205
Query: 169 QE---------------------PADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHF 206
E AD + V + A TNIC+AT+KQLFQLV+WAKHIPHF
Sbjct: 206 TEHQVEFELRCWNRKTVDAWRGRGADLNGVGPKSAVTNICQATNKQLFQLVEWAKHIPHF 265
Query: 207 TTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRV 266
T+LPL DQVLLLRAGWNELLIA+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRV
Sbjct: 266 TSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRV 325
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPD-VRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
LTELV+KMREMKMDKTEL CLR++ILFNPD VRGLKS+Q VE+LREKVY +LEEYTR H
Sbjct: 326 LTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSRQEVELLREKVYAALEEYTRTTH 385
Query: 326 SEEPGRFAKLLLRLPSLRSIEV 347
+EPGRFAKLL LPSLRSI +
Sbjct: 386 PDEPGRFAKLLPSLPSLRSISL 407
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/348 (73%), Positives = 292/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + ++PYPPNHPL GSKHL
Sbjct: 63 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 122
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 123 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 182
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 183 CLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 239
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 240 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 299
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 300 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 359
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 360 RGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 407
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/348 (73%), Positives = 292/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + ++PYPPNHPL GSKHL
Sbjct: 50 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 226
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 286
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 287 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 346
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 347 RGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 394
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/348 (73%), Positives = 291/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + +PYPPNHPL GSKHL
Sbjct: 50 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAAAPYPPNHPLSGSKHL 109
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 226
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 286
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 287 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 346
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 347 RGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 394
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/304 (81%), Positives = 272/304 (89%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE +NCIIDK
Sbjct: 22 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDK 81
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQRTK NEVESTS +MPVERILEAE+R
Sbjct: 82 RQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGEAQNEVESTSSLHADMPVERILEAEKR 141
Query: 165 VDMKQE---PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E + + N QA NIC+AT+KQLFQLV+WAKHIPHFT+LPLEDQVLLLRAG
Sbjct: 142 VEYKTENNMEFENTMNNICQAANICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAG 201
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIA+FSHRS+ VKDGI+LA G+T++R+SAH+AGVG IFDRVLTELV+KMREMKMDK
Sbjct: 202 WNELLIAAFSHRSMEVKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDK 261
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR++ILFNPDVRGLKSQQ VEMLREKVY +LEEYTR H +EPGRFAKLLLRLP+
Sbjct: 262 TELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPA 321
Query: 342 LRSI 345
LRSI
Sbjct: 322 LRSI 325
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/348 (73%), Positives = 291/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + +PYPPNHPL GSKHL
Sbjct: 28 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAAAPYPPNHPLSGSKHL 87
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 88 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 148 CLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 204
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 205 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 264
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 265 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 324
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 325 RGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 372
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/348 (73%), Positives = 291/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + ++PYPPNHPL GSKHL
Sbjct: 50 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAV EERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 170 CLAMGMKREAVHEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 226
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 286
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 287 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 346
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 347 RGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 394
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/349 (73%), Positives = 286/349 (81%), Gaps = 24/349 (6%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIIS---------------PY 45
MKPDTA+LL G+ S S G +S + +SS++S PY
Sbjct: 29 MKPDTASLL------GSGSFSPTGGGGPNSPGSFSIGHSSVLSNSTGSSQSKGSSGSSPY 82
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
PPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKR
Sbjct: 83 PPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKR 142
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQYCRYQKCL+MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV
Sbjct: 143 QRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRV 202
Query: 166 DMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
+ K E Q + E TNIC+AT+KQLFQLV+WAKHIPHFTTLPL DQVLLLRAGWNEL
Sbjct: 203 ECKSE---QQVEFESAVTNICQATNKQLFQLVEWAKHIPHFTTLPLSDQVLLLRAGWNEL 259
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIA+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELG
Sbjct: 260 LIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELG 319
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
CLR++ILFNPDVRGLKS Q VE+LREKVY +LEEYTR + +EPGRFAK
Sbjct: 320 CLRSVILFNPDVRGLKSSQEVELLREKVYAALEEYTRTTYPDEPGRFAK 368
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/348 (73%), Positives = 291/348 (83%), Gaps = 6/348 (1%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA+L+ NF+ G NS SF + HS+ + S + ++PYPPNHPL GSKHL
Sbjct: 50 MKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKHL 109
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKR AVQEERQRTKERD +EVESTS +MP+ERILEAE+RV+ K E Q
Sbjct: 170 CLAMGMKRGAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKME---QQGN 226
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIASFSHRSI V
Sbjct: 227 YENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDV 286
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G+TV+R+SA +AGVG IFDRVL+ELVSKMREMKMD+TELGCLR+IILFNP+V
Sbjct: 287 KDGIVLATGITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEV 346
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LE Y RV ++ GRFAKLLLRLP++RSI
Sbjct: 347 RGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSI 394
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/346 (74%), Positives = 287/346 (82%), Gaps = 17/346 (4%)
Query: 1 MKPDTATLLVNFN---SGGANSMSSFGSNNHSSS------HNNGSSNSSIISPYPPNHPL 51
MKPDTA+L+ + + +GG NS SF + S GSS S YPPNHPL
Sbjct: 27 MKPDTASLISSGSFSPTGGPNSPGSFTIGHSSLLNNSSSNQAKGSS-----SQYPPNHPL 81
Query: 52 CGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQ 111
GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQ
Sbjct: 82 SGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQ 141
Query: 112 YCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE- 170
YCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+ K E
Sbjct: 142 YCRYQKCLAMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVECKAEN 201
Query: 171 --PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ + N QA NIC+AT+KQLFQLV+WAKHIPHFT+LPLEDQVLLLRAGWNELLIA
Sbjct: 202 QVEYESTMNNICQAANICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIA 261
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR
Sbjct: 262 AFSHRSVDVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLR 321
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
++ILFNP+VRGLKS Q VE+LREKVY +LEEYTR H +EPGRFAK
Sbjct: 322 SVILFNPEVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAK 367
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/386 (68%), Positives = 294/386 (76%), Gaps = 45/386 (11%)
Query: 1 MKPDTATLLVNFNS------GGANSMSSFG-------SNNHSSSHNNGSSNSSIISPYPP 47
MKPDTA LL+ S G N+ SF S + SS +NGS SS PYPP
Sbjct: 13 MKPDTACLLLGSGSFTPTGGGAPNTPGSFCIGQSRVFSKSTGSSQSNGSWGSS---PYPP 69
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPLCGSKHLC+ICGDRA GKHYGVY CEGCKGFFK TVRKDLSYACRE +NCIIDKRQR
Sbjct: 70 NHPLCGSKHLCTICGDRACGKHYGVYCCEGCKGFFKWTVRKDLSYACREDKNCIIDKRQR 129
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVE----------------------- 144
NRCQYCRYQKCL MGMKREAVQEERQRTKERD NEVE
Sbjct: 130 NRCQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVELRCWNRKTVDAWRGRGADLNGVG 189
Query: 145 --STSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKH 202
STS +MPVERILEAE+RV+ K E + E TNIC+AT+KQLFQLV+WAKH
Sbjct: 190 PKSTSSLHTDMPVERILEAEKRVECKTE---HQVEFESAVTNICQATNKQLFQLVEWAKH 246
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGI 262
IPHFT+LPL DQVLLLRAGWNELLIA+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG I
Sbjct: 247 IPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTI 306
Query: 263 FDRVLTELVSKMREMKMDKTELGCLRTIILFNPD-VRGLKSQQVVEMLREKVYTSLEEYT 321
FDRVLTELV+KMREMKMDKTEL CLR++ILFNPD VRGLKS+Q VE+LREKVY +LEEYT
Sbjct: 307 FDRVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSRQEVELLREKVYAALEEYT 366
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSIEV 347
R H +EPGRFAKLL LPSLRSI +
Sbjct: 367 RTTHPDEPGRFAKLLPSLPSLRSISL 392
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/344 (74%), Positives = 283/344 (82%), Gaps = 13/344 (3%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFG-----SNNHSSSHNNGSSNSSIISP-----YPPNHP 50
MKPDTA+LL + + S HSS NN +S+S S YPPNHP
Sbjct: 29 MKPDTASLLGSGSFSPTGGGGGPNSPGSFSIGHSSVLNNSTSSSQSKSTSSSSSYPPNHP 88
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRC
Sbjct: 89 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRC 148
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
QYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD + E
Sbjct: 149 QYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVDCRPE 208
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
Q + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+F
Sbjct: 209 ---QQVEIESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAF 265
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I
Sbjct: 266 SHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSI 325
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
ILFNPDVRGLKS Q VE+LREKVY +LEEYTR + +EPGRFAK
Sbjct: 326 ILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAK 369
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/344 (74%), Positives = 283/344 (82%), Gaps = 13/344 (3%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFG-----SNNHSSSHNNGSSNSSIISP-----YPPNHP 50
MKPDTA+LL + + S HSS NN +S+S S YPPNHP
Sbjct: 51 MKPDTASLLGSGSFSPTGGGGGPNSPGSFSIGHSSVLNNSTSSSQSKSTSSSSSYPPNHP 110
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRC
Sbjct: 111 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRC 170
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
QYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD + E
Sbjct: 171 QYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVDCRPE 230
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
Q + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+F
Sbjct: 231 ---QQVEIESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAF 287
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I
Sbjct: 288 SHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSI 347
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
ILFNPDVRGLKS Q VE+LREKVY +LEEYTR + +EPGRFAK
Sbjct: 348 ILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAK 391
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/344 (74%), Positives = 283/344 (82%), Gaps = 13/344 (3%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFG-----SNNHSSSHNNGSSNSSIISP-----YPPNHP 50
MKPDTA+LL + + S HSS NN +S+S S YPPNHP
Sbjct: 41 MKPDTASLLGSGSFSPTGGGGGPNSPGSFSIGHSSVLNNSTSSSQSKSTSSSSSYPPNHP 100
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRC
Sbjct: 101 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRC 160
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
QYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD + E
Sbjct: 161 QYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVDCRPE 220
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
Q + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+F
Sbjct: 221 ---QQVEIESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAF 277
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I
Sbjct: 278 SHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSI 337
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
ILFNPDVRGLKS Q VE+LREKVY +LEEYTR + +EPGRFAK
Sbjct: 338 ILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAK 381
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/344 (74%), Positives = 283/344 (82%), Gaps = 13/344 (3%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFG-----SNNHSSSHNNGSSNSSIISP-----YPPNHP 50
MKPDTA+LL + + S HSS NN +S+S S YPPNHP
Sbjct: 63 MKPDTASLLGSGSFSPTGGGGGPNSPGSFSIGHSSVLNNSTSSSQSKSTSSSSSYPPNHP 122
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRC
Sbjct: 123 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRC 182
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
QYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD + E
Sbjct: 183 QYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVDCRPE 242
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
Q + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+F
Sbjct: 243 ---QQVEIESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAF 299
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I
Sbjct: 300 SHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSI 359
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
ILFNPDVRGLKS Q VE+LREKVY +LEEYTR + +EPGRFAK
Sbjct: 360 ILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAK 403
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/362 (69%), Positives = 287/362 (79%), Gaps = 23/362 (6%)
Query: 1 MKPDTATLLVNFNSG---GANSMSSFGSN------------NHSSSHNNGSSNSSIISPY 45
MKPDTATL+ F+ G G NS +S S HS NN SN S Y
Sbjct: 12 MKPDTATLMAGFSPGSVGGGNSPTSPRSGLGFSLPQPSFTIGHSGYLNN--SNGSKSGHY 69
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
PPNHPL SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C+IDKR
Sbjct: 70 PPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKR 129
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQYCRYQKCL MGMKREAVQEERQR KE+ ++++TSG +MP++R+LEAE+RV
Sbjct: 130 QRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGEMDMDATSGGQGDMPIDRVLEAEKRV 189
Query: 166 DMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ K EP VN A NIC ATDKQLFQLV+WAKHIPHFT LPL+DQV+LLRAGWN
Sbjct: 190 ECKDEPQ----VNSATAALGNICAATDKQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWN 245
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
ELLIA+FSHRS+ VKDGI+LA G+ ++R+SAH+AGVG IFDRVLTELVSKMREMK+D E
Sbjct: 246 ELLIAAFSHRSVGVKDGIVLATGLVIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAE 305
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
LGCLR IILFNPD +GLKS VE LREKVY +LEEYTR N+++EPGRFAKLLLRLP+LR
Sbjct: 306 LGCLRAIILFNPDPKGLKSVSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALR 365
Query: 344 SI 345
SI
Sbjct: 366 SI 367
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/369 (69%), Positives = 289/369 (78%), Gaps = 41/369 (11%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIIS---------------PY 45
MKPDTA+LL G+ S S G +S + +SS++S PY
Sbjct: 29 MKPDTASLL------GSGSFSPTGGGGPNSPGSFSIGHSSVLSNSTGSSQSKGSSGSSPY 82
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
PPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKR
Sbjct: 83 PPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKR 142
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQYCRYQKCL+MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV
Sbjct: 143 QRNRCQYCRYQKCLSMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRV 202
Query: 166 DMKQEP-------------------ADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPH 205
+ K E A+ + V + A TNIC+AT+KQLFQLV+WAKHIPH
Sbjct: 203 ECKSEQQVEFELRCWNRKVDAWRRRAELNGVGPKSAVTNICQATNKQLFQLVEWAKHIPH 262
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
FTTLPL DQVLLLRAGWNELLIA+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDR
Sbjct: 263 FTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDR 322
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELV+KMREMKMDKTELGCLR++ILFNPDVRGLKS Q VE+LREKVY +LEEYTR +
Sbjct: 323 VLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSSQEVELLREKVYAALEEYTRTTY 382
Query: 326 SEEPGRFAK 334
+EPGRFAK
Sbjct: 383 PDEPGRFAK 391
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 283/349 (81%), Gaps = 6/349 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSS--SHNNGSSNSSIISPYPPNHPLCGSKHLC 58
MKPD +TL F+ G NS SF H S S + + N S SPYPPNHPL GSKHLC
Sbjct: 28 MKPDASTL-GQFSPQGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLC 86
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKC
Sbjct: 87 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKC 146
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP--ADQDI 176
LNMGMKREAVQEERQRTK+RD++EVESTS +MP+ERI+EAE+RV+ +P A
Sbjct: 147 LNMGMKREAVQEERQRTKDRDTSEVESTSNLQADMPLERIIEAEKRVEC-NDPLVALVVN 205
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
N NIC+AT KQLFQLV WAK +PHFT+LPL DQV LLRAGWNELLIA+FSHRS+
Sbjct: 206 ENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ 265
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+D I+LA G+TV +S+AH GVG I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPD
Sbjct: 266 AQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPD 325
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VRG+KS Q VEMLREK+Y LEEYTR H EPGRFAKLLLRLP+LRSI
Sbjct: 326 VRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSI 374
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 283/349 (81%), Gaps = 6/349 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSS--SHNNGSSNSSIISPYPPNHPLCGSKHLC 58
MKPD +TL F+ G NS SF H + S + + N S SPYPPNHPL GSKHLC
Sbjct: 28 MKPDASTL-GQFSPQGPNSPVSFSMGGHGTLLSPSGNTPNKSSTSPYPPNHPLSGSKHLC 86
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKC
Sbjct: 87 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKC 146
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP--ADQDI 176
LNMGMKREAVQEERQRTK+RD++EVESTS +MP+ERI+EAE+RV+ +P A
Sbjct: 147 LNMGMKREAVQEERQRTKDRDTSEVESTSNLQADMPLERIIEAEKRVEC-NDPLVALVVN 205
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
N NIC+AT KQLFQLV WAK +PHFT+LPL DQV LLRAGWNELLIA+FSHRS+
Sbjct: 206 ENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ 265
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+D I+LA G+TV +S+AH GVG I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPD
Sbjct: 266 AQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPD 325
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VRG+KS Q VEMLREK+Y LEEYTR H EPGRFAKLLLRLP+LRSI
Sbjct: 326 VRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSI 374
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 291/351 (82%), Gaps = 11/351 (3%)
Query: 1 MKPDTATLL--VNFNSGGANSMSSFGSNNHS---SSHNNGSSNSSIISPYPPNHPLCGSK 55
MKPDTA+L+ NF+ G S SF + H S+ +G + S+ +PYPPNHPL GSK
Sbjct: 45 MKPDTASLINPGNFSPSGPISPVSFTAGCHGNLLSTSPSGQNKSA--APYPPNHPLSGSK 102
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRY 115
HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRY
Sbjct: 103 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRY 162
Query: 116 QKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQD 175
QKCL MGMKREAVQEERQRTKERD +EVESTS +MP++RILEAE+RV+ K E
Sbjct: 163 QKCLAMGMKREAVQEERQRTKERDQSEVESTSNLHADMPIDRILEAEKRVECKMEHLGN- 221
Query: 176 IVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
E ++IC AT+KQLFQLV WAKHIPHFT+LP+ DQ+LLL+AGWNELLIA+FS+RSI
Sbjct: 222 --YENAVSHICNATNKQLFQLVTWAKHIPHFTSLPVADQILLLKAGWNELLIAAFSYRSI 279
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIF-DRVLTELVSKMREMKMDKTELGCLRTIILFN 294
VKD I+LA G TV+R+SA +AG+ IF DRVL+ELVSKMREMKMD+TELGCLR+IILFN
Sbjct: 280 EVKDSIVLATGTTVHRNSAQQAGLITIFDDRVLSELVSKMREMKMDRTELGCLRSIILFN 339
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
PDVRGLKS Q V MLREK+Y +LEEYTRV+ ++PGRFAKLLLRLPS+RSI
Sbjct: 340 PDVRGLKSIQEVSMLREKIYAALEEYTRVSCPDDPGRFAKLLLRLPSIRSI 390
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 277/346 (80%), Gaps = 1/346 (0%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPD +TL N A+ S S + + G+ N S S YPPNHPL GSKHLCSI
Sbjct: 30 MKPDASTLGQNSPVSFASGHGSLLSFSPQGPPSGGTPNKSCGSLYPPNHPLSGSKHLCSI 89
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCLN
Sbjct: 90 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLN 149
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQ 180
MGMKREAVQEERQRTK+RD++EVESTS EMP++RI+EAE+R++ + +
Sbjct: 150 MGMKREAVQEERQRTKDRDTSEVESTSNMQAEMPLDRIIEAEKRIECTPAGGSGGVGEQH 209
Query: 181 QAT-NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD 239
NIC+AT+KQLFQLV WAK IPHFT+LP+ DQVLLLRAGWNELLIA+FSHRSI +D
Sbjct: 210 DGVNNICQATNKQLFQLVQWAKLIPHFTSLPMSDQVLLLRAGWNELLIAAFSHRSIQAQD 269
Query: 240 GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
I+LA G+TV ++SAH GVG I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NP RG
Sbjct: 270 AIVLATGLTVNKTSAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPTCRG 329
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+KS Q VEMLREK+Y LEEYTR H EPGRFAKLLLRLP+LRSI
Sbjct: 330 IKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSI 375
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/335 (72%), Positives = 275/335 (82%), Gaps = 5/335 (1%)
Query: 1 MKPDTATLLV-NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCS 59
MKPD A+LL +F+ A++ +S + + G+ N S+ +PYPPNHPL GSKHLCS
Sbjct: 25 MKPDAASLLAGSFSPSQASNPTSPAGFGMAHNSVLGNGNKSLNTPYPPNHPLSGSKHLCS 84
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE + C++DKRQRNRCQYCRYQKCL
Sbjct: 85 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKQCLVDKRQRNRCQYCRYQKCL 144
Query: 120 NMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNE 179
+MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD K EP +V
Sbjct: 145 SMGMKREAVQEERQRTKERDQNEVESTSSFHTDMPVERILEAERRVDFKVEP----MVEY 200
Query: 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD 239
+ A + +ATDKQL QLV+WAK IPHFT+LP+EDQVLLLRAGWNELLIA FSHRSI VK+
Sbjct: 201 ENANTLFQATDKQLVQLVEWAKQIPHFTSLPIEDQVLLLRAGWNELLIAGFSHRSIGVKE 260
Query: 240 GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
I+L GVTV R++AH+AGV IFDR LTELVSKMREMKMDK ELGCLRTIIL+NP+VRG
Sbjct: 261 KIVLGSGVTVCRNTAHQAGVDTIFDRALTELVSKMREMKMDKAELGCLRTIILYNPEVRG 320
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
L+S VE LREKVY SLEEYTR H EEPGRFAK
Sbjct: 321 LRSVGEVEALREKVYASLEEYTRSTHPEEPGRFAK 355
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/347 (70%), Positives = 284/347 (81%), Gaps = 9/347 (2%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSS--SHNNGSSNSSIISPYPPNHPLCGSKHLC 58
+KPD +TL F+ G NS SF S H++ S + G SPYPPNHPL GSKHLC
Sbjct: 12 IKPDASTL--QFSPQGPNSPGSF-SLGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLC 68
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICGD+ASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC+IDKRQRNRCQYCRYQKC
Sbjct: 69 SICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKC 128
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN 178
L MGMKREAVQEERQRTK+RD++EVESTS EM +ER+LEAE+RV+ P +
Sbjct: 129 LVMGMKREAVQEERQRTKDRDASEVESTSSNPNEMSIERLLEAEKRVECNDPP----VAL 184
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E TNIC+AT+KQL QLV+WAK IPHFT+LP+ DQVLLLRAGWNELLIASFSHRS+ +
Sbjct: 185 ENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQ 244
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
+GI+LA G+T+ +S+A GVG I+DRVL+ELV+KM+EM+MDKTELGCLR IIL+NPDVR
Sbjct: 245 EGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVR 304
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL+S Q VE+LREK+Y +LEEYTR H EPGRFAKLLLRLP+LRSI
Sbjct: 305 GLQSTQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSI 351
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/347 (70%), Positives = 281/347 (80%), Gaps = 7/347 (2%)
Query: 1 MKPDTATL-LVNFNSGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHLC 58
+KPDTA + NF+ G NS F + HS+ + S S ++PYPPNHPL GSKHLC
Sbjct: 29 LKPDTALINPGNFSPSGPNSPGPFNAGCHSNLLSTSPSGQSKTVTPYPPNHPLSGSKHLC 88
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQKC
Sbjct: 89 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKC 148
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN 178
L MGMKREAVQEERQRTKERD +EVESTS +MP+ERILEAE+ ++ K E N
Sbjct: 149 LAMGMKREAVQEERQRTKERDQSEVESTSSLHADMPIERILEAEKWIECKIEQG-----N 203
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
+ A ++C AT +QL+QLV WAKHIPHFT+LP+ DQV LL AGWNELLIA+FSHRSI K
Sbjct: 204 YETAVHLCNATKQQLYQLVAWAKHIPHFTSLPVADQVHLLNAGWNELLIAAFSHRSIDTK 263
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
D I+L G V+R SA +AGV IFDRV++ELVSKMREMK+DKTELGCLR+IILFNPDVR
Sbjct: 264 DSIILTTGAAVHRHSALQAGVVTIFDRVISELVSKMREMKVDKTELGCLRSIILFNPDVR 323
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
G+KS Q V +LREK+Y +LEEYTRVN ++PGRFAKLLLRLPS+RSI
Sbjct: 324 GIKSIQEVSLLREKIYAALEEYTRVNCPDDPGRFAKLLLRLPSIRSI 370
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/343 (71%), Positives = 275/343 (80%), Gaps = 33/343 (9%)
Query: 1 MKPDTATLLVNFN---SGGANSMSSFGSNNHSSS------HNNGSSNSSIISPYPPNHPL 51
MKPDTA+L+ + + +GG NS SF + S GSS S YPPNHPL
Sbjct: 27 MKPDTASLISSGSFSPTGGPNSPGSFTIGHSSLLNNSSSNQAKGSS-----SQYPPNHPL 81
Query: 52 CGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQ 111
GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQ
Sbjct: 82 SGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQ 141
Query: 112 YCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP 171
YCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+
Sbjct: 142 YCRYQKCLAMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVE----- 196
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
CKA ++ ++LV+WAKHIPHFT+LPLEDQVLLLRAGWNELLIA+FS
Sbjct: 197 --------------CKAENQVEYELVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFS 242
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR++I
Sbjct: 243 HRSVDVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVI 302
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
LFNP+VRGLKS Q VE+LREKVY +LEEYTR H +EPGRFAK
Sbjct: 303 LFNPEVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAK 345
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 250/282 (88%), Gaps = 3/282 (1%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
PL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNR
Sbjct: 1 PLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNR 60
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+ K
Sbjct: 61 CQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVECKT 120
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
E + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+
Sbjct: 121 E---HQVEFESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAA 177
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+
Sbjct: 178 FSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRS 237
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
+ILFNPDVRGLKS VE LREKVY +LEEYTR H +EPGR
Sbjct: 238 VILFNPDVRGLKSAPDVEALREKVYAALEEYTRTTHPDEPGR 279
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/282 (81%), Positives = 250/282 (88%), Gaps = 3/282 (1%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
PL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNR
Sbjct: 1 PLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNR 60
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQRTKERD NEVESTS +MPVERILEAE+RV+ K
Sbjct: 61 CQYCRYQKCLGMGMKREAVQEERQRTKERDQNEVESTSSLHTDMPVERILEAEKRVECKT 120
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
E + E TNIC+AT+KQLFQLV+WAKHIPHFT+LPL DQVLLLRAGWNELLIA+
Sbjct: 121 E---HQVEFESAVTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAA 177
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+
Sbjct: 178 FSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRS 237
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
+ILFNPDVRGLKS VE LREKVY +LEEYTR H +EPGR
Sbjct: 238 VILFNPDVRGLKSGPDVETLREKVYAALEEYTRTTHPDEPGR 279
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/344 (67%), Positives = 281/344 (81%), Gaps = 13/344 (3%)
Query: 13 NSGGANSMSSFGSNNHSSSHNN---GSSNSSIISP---YPPNHPLCGSKHLCSICGDRAS 66
+S G S+S+ G+ +SS +++S ++P YPPNHPL GSKHLC+ICGDRAS
Sbjct: 37 SSLGPTSLSNEGATLVTSSQTQPQFTGNHNSFLTPSGHYPPNHPLSGSKHLCAICGDRAS 96
Query: 67 GKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKRE 126
GKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C IDKRQRNRCQYCRYQKCL MGMKRE
Sbjct: 97 GKHYGVYSCEGCKGFFKRTVRKDLTYACREERTCTIDKRQRNRCQYCRYQKCLMMGMKRE 156
Query: 127 A-----VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ 181
A VQEERQRTK+R+ NEVESTS +MP+ERILEAE ++ K++ +D D ++
Sbjct: 157 ALFVSAVQEERQRTKDRNENEVESTSNFQSDMPIERILEAELYIEPKRDDSDPD--HKDP 214
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
NIC+A D QL+QLV+WAKH+PHFT LPL+DQ++LL+AGWNELLIA+FSHRSI VKDGI
Sbjct: 215 VANICQAADHQLYQLVEWAKHVPHFTDLPLDDQMVLLKAGWNELLIAAFSHRSIDVKDGI 274
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
+LA G+ V+R+SAH AGVG IFDRVLTELV+KMREM MDKTELGCLR I+LFNP+ +GLK
Sbjct: 275 VLASGLIVHRNSAHGAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLFNPEAKGLK 334
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
S VE LRE+VY++LE+Y R N+ ++PGRFAKLLLRLP+LRSI
Sbjct: 335 SVTHVENLRERVYSALEDYCRQNYFDQPGRFAKLLLRLPALRSI 378
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/306 (75%), Positives = 260/306 (84%), Gaps = 8/306 (2%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
S YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCII
Sbjct: 67 SRYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCII 126
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG-TLIEMPVERILEA 161
DKRQRNRCQYCRYQKCL+ GMKREAVQEERQRTK+R NEVESTSG EMP+ERILEA
Sbjct: 127 DKRQRNRCQYCRYQKCLSCGMKREAVQEERQRTKDRADNEVESTSGGAPAEMPLERILEA 186
Query: 162 EQRVDMK--QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
E RV+ K P QD V ++IC+A D+QL QLV+WAKHIPHF LPLED+++LL+
Sbjct: 187 ELRVEPKGGSAPESQDPV-----SSICQAADRQLHQLVEWAKHIPHFVELPLEDRMVLLK 241
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIA+FSHRSI V+DGI+LA G+ V R SAH AGVG IFDRVLTELV+KMREMKM
Sbjct: 242 AGWNELLIAAFSHRSIGVRDGIVLATGLVVQRHSAHGAGVGAIFDRVLTELVAKMREMKM 301
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D+TELGCLR ++LFNP+ +GL+S VE LREKVY +LEE+ R + E+PGRFAKLLLRL
Sbjct: 302 DRTELGCLRAVVLFNPEAKGLRSTAQVEALREKVYAALEEHCRQQYPEQPGRFAKLLLRL 361
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 362 PALRSI 367
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/343 (70%), Positives = 273/343 (79%), Gaps = 14/343 (4%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSII--SP-YPPNHPLCGSKHL 57
+KPDTATL+VNF+ GA +S G +S NN +NS + SP YPPNHPL GSKHL
Sbjct: 47 LKPDTATLMVNFSPPGA-PLSPAGL--YSVDRNNMMNNSCNVQDSPNYPPNHPLSGSKHL 103
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE CIIDKRQRNRCQYCRYQK
Sbjct: 104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQK 163
Query: 118 CLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQRVDMKQEPADQD 175
CL MGMKREAVQEERQRTKERD N EVE TS + +MPVE IL AE + D + +Q
Sbjct: 164 CLTMGMKREAVQEERQRTKERDHNSIEVEPTSSSNTDMPVELILRAENKADAIK--TEQQ 221
Query: 176 IVNEQQATN----ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+ +Q + IC+ATDKQL QLV+WAKHIPHF LPL DQVLLLRAGWNEL+IA+FS
Sbjct: 222 YIEQQHPQHTVGAICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFS 281
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRSISVKDGI+LA G+TV R SAH+AGV IFDRVLTELV+KMR+M MD+TELGCLRTII
Sbjct: 282 HRSISVKDGIVLATGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTII 341
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
LFNP +GL+S VE+LR+KVY +LEEY R H EEPGRFAK
Sbjct: 342 LFNPGSKGLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAK 384
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/343 (70%), Positives = 273/343 (79%), Gaps = 14/343 (4%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSII--SP-YPPNHPLCGSKHL 57
+KPDTATL+VNF+ GA +S G +S NN +NS + SP YPPNHPL GSKHL
Sbjct: 47 LKPDTATLMVNFSPPGA-PLSPAGL--YSVDRNNMMNNSCNVQDSPNYPPNHPLSGSKHL 103
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE CIIDKRQRNRCQYCRYQK
Sbjct: 104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQK 163
Query: 118 CLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQRVDMKQEPADQD 175
CL MGMKREAVQEERQRTKERD N EVE TS + +MPVE IL AE + D + +Q
Sbjct: 164 CLTMGMKREAVQEERQRTKERDHNSIEVEPTSSSNTDMPVELILRAENKADAIK--TEQQ 221
Query: 176 IVNEQQATN----ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+ +Q + IC+ATDKQL QLV+WAKHIPHF LPL DQVLLLRAGWNEL+IA+FS
Sbjct: 222 YIEQQHPQHTVGAICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFS 281
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRSISVKDGI+LA G+TV R SAH+AGV IFDRVLTELV+KMR+M MD+TELGCLRTII
Sbjct: 282 HRSISVKDGIVLATGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTII 341
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
LFNP +GL+S VE+LR+KVY +LEEY R H EEPGRFAK
Sbjct: 342 LFNPGSKGLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAK 384
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/330 (69%), Positives = 261/330 (79%), Gaps = 29/330 (8%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNC+IDK
Sbjct: 91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCVIDK 150
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL+ GMKREAVQEERQRTKER NEVESTS EMP++RILEAE R
Sbjct: 151 RQRNRCQYCRYQKCLSCGMKREAVQEERQRTKERGENEVESTSSGQAEMPIDRILEAELR 210
Query: 165 VDMKQE----------------------------PADQDIVNEQQ-ATNICKATDKQLFQ 195
V+ K E PAD + E+ TNIC+A D+QL Q
Sbjct: 211 VEPKAEDLEVNALPSRGAPAPQPVHRLPFVPQVKPADLTMPPEKDPVTNICQAADRQLHQ 270
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAKHIPHFT LPLED+++LL+AGWNELLIA+FSHRS+ VKDGI+LA G+ V R SAH
Sbjct: 271 LVEWAKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXVKDGIVLATGLVVQRHSAH 330
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
AGVG IFDRVLTELV+KMRE++MD+TELGCLR I+LFNP+ RGL+ VE LRE+VY
Sbjct: 331 SAGVGAIFDRVLTELVAKMRELRMDRTELGCLRAIVLFNPEARGLRCSAQVEALRERVYA 390
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LE++ R + E+PGRFAKLLLRLP+LRSI
Sbjct: 391 ALEDHCRQQYPEQPGRFAKLLLRLPALRSI 420
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 225/303 (74%), Positives = 258/303 (85%), Gaps = 6/303 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C IDK
Sbjct: 64 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDK 123
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQ 163
RQRNRCQYCRYQKCL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE
Sbjct: 124 RQRNRCQYCRYQKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMPITSIHEAEI 183
Query: 164 RVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
V EP D+ V++ A TNIC+A D+ L QLV+WAKHIPHFT LP++DQV+LL+AGW
Sbjct: 184 IV----EPTDEQPVDQGDAVTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGW 239
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIA+FSHRSI VKDGI+LA G+ V+RSSAH+AGVG IFDRVL+ELV+KM+EMKMDKT
Sbjct: 240 NELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKT 299
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR+I+LFNPD RGL S VE+LREKVY +LEEYTR ++ EPGRFAKLLLRLP+L
Sbjct: 300 ELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPAL 359
Query: 343 RSI 345
RSI
Sbjct: 360 RSI 362
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/348 (68%), Positives = 272/348 (78%), Gaps = 27/348 (7%)
Query: 1 MKPDTATL-LVNFN-SGGANSMSSFGSNNHSSS-HNNGSSNSSIISPYPPNHPLCGSKHL 57
MKPDTA + NF+ SGG NS SF + HS+ + S S ++PYPPNHPL GSKHL
Sbjct: 33 MKPDTALINPGNFSPSGGPNSPGSFNAGCHSNLLSTSPSGQSKTVAPYPPNHPLSGSKHL 92
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQK
Sbjct: 93 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 152
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL M VESTS +MP+ERILEAE+RV+ K E
Sbjct: 153 CLTM---------------------VESTSNMHADMPIERILEAEKRVECKIEHQGN--- 188
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
E ++IC AT+KQLFQLV WAKHIPHFT+LPLEDQVLLLRAGWNELLIA+FSHRSI V
Sbjct: 189 YENAMSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSIDV 248
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGI+LA G TV R+SA +AGVG IFDRVL+ELVSKMREM+MD+TELGCLR+IILFNPDV
Sbjct: 249 KDGIVLATGTTVNRNSAQQAGVGTIFDRVLSELVSKMREMEMDRTELGCLRSIILFNPDV 308
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
RGLKS Q V +LREK+Y +LEEYTR++ +PGRFAKLLLRLPS+RSI
Sbjct: 309 RGLKSVQEVNLLREKIYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSI 356
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/340 (69%), Positives = 267/340 (78%), Gaps = 14/340 (4%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPN------HPLCGSKHLCSICGDRASG 67
S G M S G HS + + GS +SP P+ H +KH+C+ICGDRASG
Sbjct: 69 SPGPQQMHSPGM--HSPTSSMGSPPMLCLSPTGPSPSPGLPHSSLHTKHICAICGDRASG 126
Query: 68 KHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127
KHYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKRQRNRCQYCRY KCL+MGMKREA
Sbjct: 127 KHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREA 186
Query: 128 VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNI 185
VQEERQR KE+ EVESTSG +MPVE+ILEAE VD P ++ Q+ TNI
Sbjct: 187 VQEERQRVKEKGDGEVESTSGANNDMPVEQILEAELAVD----PKIDTYIDAQKDPVTNI 242
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP 245
C+A DKQLF LV+WAK IPHFT LPLEDQV+LLRAGWNELLIA FSHRSI KDGILLA
Sbjct: 243 CQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLAT 302
Query: 246 GVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQV 305
G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR ++LFNPD +GL + Q
Sbjct: 303 GLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQE 362
Query: 306 VEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLEEYT+ + EEPGRFAKLLLRLP+LRSI
Sbjct: 363 VEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSI 402
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/346 (65%), Positives = 271/346 (78%), Gaps = 4/346 (1%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
+ P + LL + GA S S + ++ ++ + YPPNHPL GSKHLCSI
Sbjct: 58 LPPQPSFLLSGY---GAPSASRPPLDGRQLNNGPPAAPQQAATRYPPNHPLSGSKHLCSI 114
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNC+IDKRQRNRCQYCRYQKCL+
Sbjct: 115 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCVIDKRQRNRCQYCRYQKCLS 174
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSG-TLIEMPVERILEAEQRVDMKQEPADQDIVNE 179
GMKREAVQEERQRTK+R +EVESTSG EMP+ERILEAE RV+ + +
Sbjct: 175 CGMKREAVQEERQRTKDRADSEVESTSGGAPPEMPLERILEAELRVEPHTGTLSESAQQQ 234
Query: 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD 239
++IC+A D+QL QLV WAKHIPHF LP+ED+++LL+AGWNELLIA+FSHRSI V+D
Sbjct: 235 DPVSSICQAADRQLHQLVQWAKHIPHFEELPIEDRMVLLKAGWNELLIAAFSHRSIDVRD 294
Query: 240 GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
GI+LA G+ V R SAH AGVG IFDRVLTELV+KMREMKMD+TELGCLR ++LFNP+ +G
Sbjct: 295 GIVLATGLVVQRHSAHSAGVGAIFDRVLTELVAKMREMKMDRTELGCLRAVVLFNPEAKG 354
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+S VE LREKVY +LE++ R + ++PGRFAKLLLRLP+LRSI
Sbjct: 355 LRSTAQVEALREKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSI 400
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/320 (70%), Positives = 264/320 (82%), Gaps = 11/320 (3%)
Query: 28 HSSSHNNGSSNS-SIISP-YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
HS+S+ SS S + SP YP NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT
Sbjct: 63 HSNSYAQLSSQSQNPPSPQYPANHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 122
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRKDLSYACRE RNCIIDKRQRNRCQYCRYQKCL+MGMKREAVQEERQR +ER NEVES
Sbjct: 123 VRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNRERSENEVES 182
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPH 205
TS ++ ++RILEAE +D K+EP TNIC+ D+QL+QLV+WAKHIPH
Sbjct: 183 TSNIQGDISIDRILEAELWMDAKKEP---------DVTNICQVADQQLYQLVEWAKHIPH 233
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F LPLED+ +LL++GWNELLIASF H+S+SVKDGI+LA G V+R+SAH AGVG IFDR
Sbjct: 234 FNDLPLEDRTILLKSGWNELLIASFCHKSVSVKDGIVLASGTIVHRNSAHNAGVGTIFDR 293
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+L+ELV+KMREMKMDKTELGCL+ IILFNP+ + LKS Q V LR+KVYT+LEEY + +
Sbjct: 294 LLSELVNKMREMKMDKTELGCLKAIILFNPEAKHLKSTQEVTNLRDKVYTALEEYCKQMY 353
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
++ GRF KLLLRLP+LRSI
Sbjct: 354 PQQNGRFPKLLLRLPALRSI 373
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/314 (73%), Positives = 260/314 (82%), Gaps = 8/314 (2%)
Query: 35 GSSNSSIIS-PYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 93
GS++S S P+ P H SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YA
Sbjct: 103 GSASSPPGSNPHMP-HSNLNSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 161
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
CR+ RNCIIDKRQRNRCQYCRY KCLNMGMKREAVQEERQR KE+ EVESTS +M
Sbjct: 162 CRDDRNCIIDKRQRNRCQYCRYMKCLNMGMKREAVQEERQRVKEKGEGEVESTSTANSDM 221
Query: 154 PVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
PVE+ILEAE V EP ++ Q+ TNIC+A DKQLF LV+WAK IPHFT LPL
Sbjct: 222 PVEKILEAELAV----EPKTDTYIDAQKDTVTNICQAADKQLFTLVEWAKRIPHFTELPL 277
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
EDQV+LLRAGWNELLIA FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLTELV
Sbjct: 278 EDQVILLRAGWNELLIAGFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELV 337
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
+KMREMKMDKTELGCLR I+LFNPD +G+ + VE LREKVY SLEEY ++++ +EPGR
Sbjct: 338 AKMREMKMDKTELGCLRAIVLFNPDAKGVSAVSEVEQLREKVYASLEEYCKMHYPDEPGR 397
Query: 332 FAKLLLRLPSLRSI 345
FAKLLLRLP+LRSI
Sbjct: 398 FAKLLLRLPALRSI 411
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/303 (74%), Positives = 258/303 (85%), Gaps = 7/303 (2%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C IDK
Sbjct: 64 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDK 123
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQ 163
RQRNRCQYCRYQKCL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE
Sbjct: 124 RQRNRCQYCRYQKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMPITSIHEAEI 183
Query: 164 RVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
V EP D+ V++ A TNIC+A D+ L QLV+WAKHIPHFT LP++DQV+LL+AGW
Sbjct: 184 IV----EPTDEQPVDQGDAVTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGW 239
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIA+FSHRSI VKDGI+LA G+ V+RSSAH+AGVG IFDRVL+ELV+KM+EMKMDKT
Sbjct: 240 NELLIAAFSHRSIGVKDGIVLATGL-VHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKT 298
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR+I+LFNPD RGL S VE+LREKVY +LEEYTR ++ EPGRFAKLLLRLP+L
Sbjct: 299 ELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPAL 358
Query: 343 RSI 345
RSI
Sbjct: 359 RSI 361
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/383 (61%), Positives = 279/383 (72%), Gaps = 40/383 (10%)
Query: 1 MKPDTATLLV------NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGS 54
+ PDT +LL N G A+ S SS+ G S S S YPP+HPL GS
Sbjct: 45 VAPDTVSLLSPAPSFSTANGGPASPSISTPPFTIGSSNTTGLSTSP--SQYPPSHPLSGS 102
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCR
Sbjct: 103 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCR 162
Query: 115 YQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPA 172
YQKCL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P
Sbjct: 163 YQKCLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPL 222
Query: 173 DQDI----------------------------VNEQQ--ATNICKATDKQLFQLVDWAKH 202
DQ + N Q +NIC+A D+ L QLV+WAKH
Sbjct: 223 DQGVRLQVPLAPPDSEKCSFTLPFHPVSEVSCANPLQDVVSNICQAADRHLVQLVEWAKH 282
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGI 262
IPHFT LP+EDQV+LL+AGWNELLIASFSHRS+ V+DGI+LA G+ ++RSSAH+AGVG I
Sbjct: 283 IPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAI 342
Query: 263 FDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTR 322
FDRVL+ELV+KM+EMK+DKTELGCLR+I+LFNPD +GL VE+LREKVY +LEEYTR
Sbjct: 343 FDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCVNDVEILREKVYAALEEYTR 402
Query: 323 VNHSEEPGRFAKLLLRLPSLRSI 345
+ +EPGRFAKLLLRLP+LRSI
Sbjct: 403 TTYPDEPGRFAKLLLRLPALRSI 425
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/308 (73%), Positives = 258/308 (83%), Gaps = 11/308 (3%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C IDK
Sbjct: 64 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDK 123
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQ-----EERQRTK-ERDSNEVESTSGTLIEMPVERI 158
RQRNRCQYCRYQKCL MGMKREAVQ EERQRTK ++ + ES+ G + +MP+ I
Sbjct: 124 RQRNRCQYCRYQKCLGMGMKREAVQVGGIEEERQRTKGDKGDGDPESSCGGISDMPITSI 183
Query: 159 LEAEQRVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
EAE V EP D+ V++ A TNIC+A D+ L QLV+WAKHIPHFT LP++DQV+L
Sbjct: 184 HEAEIIV----EPTDEQPVDQGDAVTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVL 239
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREM 277
L+AGWNELLIA+FSHRSI VKDGI+LA G+ V+RSSAH+AGVG IFDRVL+ELV+KM+EM
Sbjct: 240 LKAGWNELLIAAFSHRSIGVKDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEM 299
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
KMDKTELGCLR+I+LFNPD RGL S VE+LREKVY +LEEYTR ++ EPGRFAKLLL
Sbjct: 300 KMDKTELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLL 359
Query: 338 RLPSLRSI 345
RLP+LRSI
Sbjct: 360 RLPALRSI 367
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/372 (64%), Positives = 275/372 (73%), Gaps = 31/372 (8%)
Query: 1 MKPDTATL--------LVNFNSGGANSMSSFG--SNNHSSSHNNG--SSNSSIISP---- 44
+KPD ++L F GG SM+S S H+ G S SS+ SP
Sbjct: 35 IKPDISSLTSPTSTHGYYGFGPGGMPSMASSTQPSPGPQQMHSPGMHSPTSSMGSPPMLC 94
Query: 45 ---------YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
H +KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR
Sbjct: 95 LSPSGPSPSPGLPHSSLHTKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACR 154
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
+ +NC+IDKRQRNRCQYCRY KCL+MGMKREAVQEERQR KE+ EVESTSG +MPV
Sbjct: 155 DDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPV 214
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
E+ILEAE VD P ++ Q+ TNIC+A DKQLF LV+WAK IPHFT LPLED
Sbjct: 215 EQILEAELAVD----PKIDTYIDAQKDPVTNICQAADKQLFTLVEWAKRIPHFTELPLED 270
Query: 214 QVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
QV+LLRAGWNELLIA FSHRSI KDGILLA G+ V+RSSAH+AGVG IFDRVLTELV+K
Sbjct: 271 QVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAK 330
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+MKMDKTELGCLR ++LFNPD +GL + Q VE LREKVY SLEEYT+ + EEPGRFA
Sbjct: 331 MRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFA 390
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 391 KLLLRLPALRSI 402
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/313 (71%), Positives = 257/313 (82%), Gaps = 8/313 (2%)
Query: 37 SNSSIISPYPPN--HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
S S+ SP P+ H SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YAC
Sbjct: 104 SPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 163
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
R+ RNC+IDKRQRNRCQYCRY KCL MGMKREAVQEERQR KE+ EVESTS +MP
Sbjct: 164 RDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREAVQEERQRVKEKGEGEVESTSSANSDMP 223
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLE 212
VE++L+AE VD P ++ Q+ TNIC+A DKQLF LV WA+ IPHFT LPLE
Sbjct: 224 VEKVLDAELSVD----PKLDTYIDTQKDPVTNICQAADKQLFTLVAWARRIPHFTELPLE 279
Query: 213 DQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVS 272
DQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLTELV+
Sbjct: 280 DQVILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVA 339
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+MREMKMDKTELGCLR I+LFNPD +GL + Q VE LREKVY SLEEY++ + +EPGRF
Sbjct: 340 RMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRF 399
Query: 333 AKLLLRLPSLRSI 345
AKLLLRLP+LRSI
Sbjct: 400 AKLLLRLPALRSI 412
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/292 (75%), Positives = 253/292 (86%), Gaps = 5/292 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNC+IDKRQRNRCQYC
Sbjct: 1 SKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYC 60
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL+MGMKREAVQEERQR KE++ NEVESTS +MP+ERILEAE RV EP D
Sbjct: 61 RYQKCLSMGMKREAVQEERQRNKEKNENEVESTSSIHNDMPLERILEAELRV----EPKD 116
Query: 174 QDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
+ I ++ TN C+A ++QL QLV+WAKHIPHFT LP+EDQV LLRAGWNELLIA+FSHR
Sbjct: 117 EQIGDKNTMTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHR 176
Query: 234 SISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
S++VKD I+LA G+ ++R+ AH AGVG IFDRVLTELV+KMREMKMD+TELGCLR IILF
Sbjct: 177 SVNVKDSIVLATGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIILF 236
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
NP V+GL+S QV+E LRE+VY +LEEY + + +EPGRFAKLLLRLP+LRSI
Sbjct: 237 NP-VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSI 287
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/339 (68%), Positives = 262/339 (77%), Gaps = 13/339 (3%)
Query: 13 NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPY---PPNHPLCG-SKHLCSICGDRASGK 68
+ GG N S HS + + GS +SP P P G SKH+C+ICGDRASGK
Sbjct: 65 SPGGPNMTSP---QMHSPTSSLGSPTMMCLSPTGTSSPGMPHSGLSKHICAICGDRASGK 121
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKRQRNRCQYCRY KCL GMKREAV
Sbjct: 122 HYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREAV 181
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNIC 186
QEERQR KE+ EVESTSG +MPVE+ILEAE V EP ++ Q+ TNIC
Sbjct: 182 QEERQRVKEKGDGEVESTSGANSDMPVEQILEAEIAV----EPKIDTYIDAQKEPVTNIC 237
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LVDWAK IPHF LPLEDQV+LLRAGWNELLI FSHRS V DGILLA G
Sbjct: 238 QAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGILLATG 297
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD +GL+S Q V
Sbjct: 298 LHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQEV 357
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLEEY + + +EPGRFAKLLLRLP+LRSI
Sbjct: 358 EQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSI 396
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/339 (68%), Positives = 262/339 (77%), Gaps = 13/339 (3%)
Query: 13 NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPY---PPNHPLCG-SKHLCSICGDRASGK 68
+ GG N S HS + + GS +SP P P G SKH+C+ICGDRASGK
Sbjct: 76 SPGGPNMTSP---QMHSPTSSLGSPTMMCLSPTGTSSPGMPHSGLSKHICAICGDRASGK 132
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKRQRNRCQYCRY KCL GMKREAV
Sbjct: 133 HYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREAV 192
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNIC 186
QEERQR KE+ EVESTSG +MPVE+ILEAE V EP ++ Q+ TNIC
Sbjct: 193 QEERQRVKEKGDGEVESTSGANSDMPVEQILEAEIAV----EPKIDTYIDAQKEPVTNIC 248
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LVDWAK IPHF LPLEDQV+LLRAGWNELLI FSHRS V DGILLA G
Sbjct: 249 QAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGILLATG 308
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD +GL+S Q V
Sbjct: 309 LHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQEV 368
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLEEY + + +EPGRFAKLLLRLP+LRSI
Sbjct: 369 EQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSI 407
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 257/304 (84%), Gaps = 5/304 (1%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
S YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C I
Sbjct: 100 SQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTI 159
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL+MGMKREAVQEERQRTK + +S G + +MP+ +I +AE
Sbjct: 160 DKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKGDKEVDTDSALGGVNDMPISQIRDAE 219
Query: 163 QRVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+ +P D + E A ++IC+A D+ L QLV+WAKHIPHFT L ++DQV+LL+AG
Sbjct: 220 ----LNSDPTDDLLFEEGDAVSHICQAADRHLVQLVEWAKHIPHFTELSVDDQVILLKAG 275
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+ VKDGI+LA G+ V+RSSAH AGVG IFDRVL+ELV+KM+EMKMDK
Sbjct: 276 WNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHHAGVGDIFDRVLSELVAKMKEMKMDK 335
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR+I+LFNPDV+GL + + +E+LREKVY +LEEYTR ++ ++PGRFAKLLLRLP+
Sbjct: 336 TELGCLRSIVLFNPDVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPA 395
Query: 342 LRSI 345
LRSI
Sbjct: 396 LRSI 399
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/355 (65%), Positives = 268/355 (75%), Gaps = 26/355 (7%)
Query: 16 GANSMSSFGSNNHSS------SHNNGSSNSSIISP------------YPPNHPLCGSKHL 57
G +SM+S G S SH N S+S I P P PL +KH+
Sbjct: 43 GPHSMASPGVGYGPSISPQLNSHMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHI 102
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQK
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQK 162
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE------- 170
CL MGMKREAVQEERQR KER NEVESTS +MPVE+ILEAE V+ K E
Sbjct: 163 CLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILEAELAVEPKTETYIETNV 222
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
P + N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 223 PMPSNSPNDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 281
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I
Sbjct: 282 SHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 341
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 342 VLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 396
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/309 (70%), Positives = 257/309 (83%), Gaps = 10/309 (3%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
S YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C I
Sbjct: 100 SQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTI 159
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQ-----EERQRTKERDSNEVESTSGTLIEMPVER 157
DKRQRNRCQYCRYQKCL+MGMKREAVQ EERQRTK + +S G + +MP+ +
Sbjct: 160 DKRQRNRCQYCRYQKCLSMGMKREAVQVGAAEEERQRTKGDKEVDTDSALGGVNDMPISQ 219
Query: 158 ILEAEQRVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
I +AE + +P D + E A T+IC+A D+ L QLV+WAKHIPHFT LP++DQV+
Sbjct: 220 IRDAE----LNSDPTDDLLFEEGDAVTHICQAADRHLVQLVEWAKHIPHFTDLPVDDQVI 275
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LL+AGWNELLIASFSHRS+ VKDGI+LA G+ V+RSSAH AGVG IFDRVL+ELV+KM+E
Sbjct: 276 LLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHHAGVGDIFDRVLSELVAKMKE 335
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
MKMDKTELGCLR+I+LFNPDV+GL + +E+LREKVY +LEEYTR ++ ++PGRFAKLL
Sbjct: 336 MKMDKTELGCLRSIVLFNPDVKGLSACDTIEVLREKVYATLEEYTRTSYPDQPGRFAKLL 395
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 396 LRLPALRSI 404
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/331 (69%), Positives = 264/331 (79%), Gaps = 18/331 (5%)
Query: 29 SSSHNNGSSNSSIISPY----PPN-HP--LCGS-----KHLCSICGDRASGKHYGVYSCE 76
SS + G+S + + SP PPN HP + GS KH+C+ICGDRASGKHYGV+SCE
Sbjct: 180 SSLTSPGTSLTPLQSPTSTMGPPNIHPGMMGGSGVMTTKHICAICGDRASGKHYGVHSCE 239
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK 136
GCKGFFKRTVRKDL YACR+ ++C+IDKRQRNRCQ+CRY KCL+MGMKREAVQEERQR K
Sbjct: 240 GCKGFFKRTVRKDLQYACRDEKSCLIDKRQRNRCQFCRYMKCLSMGMKREAVQEERQRVK 299
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLF 194
E+ EVEST+ EMPVERILEAE V EP ++ Q+ TNIC+A DKQLF
Sbjct: 300 EKGEGEVESTTNANQEMPVERILEAELAV----EPKTDTYLDAQKDAVTNICQAADKQLF 355
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
LVDWAK +PHFT LPLEDQV+LLRAGWNELLIA FSHRS +VKDGILLA G+ V+RSSA
Sbjct: 356 TLVDWAKRVPHFTELPLEDQVILLRAGWNELLIAGFSHRSTAVKDGILLATGLHVHRSSA 415
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H+AGVG IFDRVLTELV+KMREM MDKTELGCLR I+LFNPD +GL + VE LREKVY
Sbjct: 416 HQAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLFNPDAKGLSAITDVEALREKVY 475
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLEEY + ++ EEPGRFAKLLLRLP+LRSI
Sbjct: 476 ASLEEYCKTHYPEEPGRFAKLLLRLPALRSI 506
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/355 (65%), Positives = 269/355 (75%), Gaps = 26/355 (7%)
Query: 16 GANSMSSFG-------SNNHSSSHNNGSSNSSIISPY-----------PPNHPLCGSKHL 57
G +SM+S G S +S N+ SS+ I P P PL +KH+
Sbjct: 71 GPHSMASPGVGYGPSISPQLNSPMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHI 130
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQK
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQK 190
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE------- 170
CL MGMKREAVQEERQR KER NEVESTS +MPVE+ILEAE V+ K E
Sbjct: 191 CLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILEAELAVEPKTETYIETNV 250
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
P + N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 251 PMPSNSPNDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 309
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I
Sbjct: 310 SHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 369
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 370 VLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 424
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/317 (70%), Positives = 257/317 (81%), Gaps = 12/317 (3%)
Query: 37 SNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
S S+ SP P+ P SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YAC
Sbjct: 104 SPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 163
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA----VQEERQRTKERDSNEVESTSGTL 150
R+ RNC+IDKRQRNRCQYCRY KCL MGMKREA VQEERQR KE+ EVESTS
Sbjct: 164 RDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREACLAAVQEERQRVKEKGEGEVESTSSAN 223
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTT 208
+MPVE++L++E VD P ++ Q+ TNIC+A DKQLF LV WA+ IPHFT
Sbjct: 224 SDMPVEKVLDSELSVD----PKLDTYIDTQKDPVTNICQAADKQLFTLVAWARRIPHFTE 279
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
LPLEDQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLT
Sbjct: 280 LPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFDRVLT 339
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELV+KMREMKMDKTELGCLR I+LFNPD +GL + Q VE LREKVY SLEEY++ + +E
Sbjct: 340 ELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYPDE 399
Query: 329 PGRFAKLLLRLPSLRSI 345
PGRFAKLLLRLP+LRSI
Sbjct: 400 PGRFAKLLLRLPALRSI 416
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/308 (71%), Positives = 257/308 (83%), Gaps = 11/308 (3%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPP+HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDK
Sbjct: 69 YPPSHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRSCTIDK 128
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQ-----EERQRTK-ERDSNEVESTSGTLIEMPVERI 158
RQRNRCQ+CRYQKCL+MGMKREAVQ EERQRTK ++ + ES+ G + +MP+ I
Sbjct: 129 RQRNRCQFCRYQKCLSMGMKREAVQVGAVEEERQRTKGDKGDGDTESSCGGISDMPITSI 188
Query: 159 LEAEQRVDMKQE-PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
EAE V+ E P DQ TNIC+A D+ L QLV+WAKHIPHFT LP+EDQV+L
Sbjct: 189 REAELSVEHTDEQPLDQG----DAVTNICQAADRHLVQLVEWAKHIPHFTDLPVEDQVVL 244
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREM 277
L+AGWNELLIASFSHRS+ V+DGI+LA G+ V+RSSAH+AGVG IFDRVL+ELV+KM+EM
Sbjct: 245 LKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEM 304
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
KMDKTELGCLR+I+L+NPD +GL VE+LREKVY +LEEYTR ++ EEPGRFAKLLL
Sbjct: 305 KMDKTELGCLRSIVLYNPDAKGLTCCNDVEILREKVYAALEEYTRTSYPEEPGRFAKLLL 364
Query: 338 RLPSLRSI 345
RLP+LRSI
Sbjct: 365 RLPALRSI 372
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/344 (66%), Positives = 268/344 (77%), Gaps = 15/344 (4%)
Query: 11 NFNSGGANS--MSSFGSNNH----SSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDR 64
N N G NS M+S S+ HN G+ N Y P SKH+CSICGDR
Sbjct: 91 NMNFGPINSPQMNSMNSSEDIKPPPGLHNLGNIN------YQSTSPGGISKHICSICGDR 144
Query: 65 ASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124
+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGMK
Sbjct: 145 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMK 204
Query: 125 REAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--- 181
REAVQEERQR +ER +EVESTSG +MPV++IL+AE V+ K E ++ I +
Sbjct: 205 REAVQEERQRGRERGDSEVESTSGFNEDMPVDKILDAELAVEPKTETYNEGIPSNSTNDP 264
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGI
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 324
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD +GL
Sbjct: 325 LLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLS 384
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ Q VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 385 NPQEVEGLREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSI 428
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 5/305 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 131 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 190
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NE ESTS +MPVERILEAE
Sbjct: 191 RQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSSGSEDMPVERILEAELA 250
Query: 165 VDMKQEPADQDIVNEQQ----ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 251 VEPKTE-AYSDVGTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 309
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 310 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 369
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E+PGRFAKLLLRLP
Sbjct: 370 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLP 429
Query: 341 SLRSI 345
+LRSI
Sbjct: 430 ALRSI 434
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 5/305 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 131 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 190
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NE ESTS +MPVERILEAE
Sbjct: 191 RQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSSGSEDMPVERILEAELA 250
Query: 165 VDMKQEPADQDIVNEQQ----ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 251 VEPKTE-AYSDVGTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 309
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 310 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 369
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E+PGRFAKLLLRLP
Sbjct: 370 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLP 429
Query: 341 SLRSI 345
+LRSI
Sbjct: 430 ALRSI 434
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/294 (74%), Positives = 250/294 (85%), Gaps = 7/294 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRK+L+YACR+ +NC+IDKRQRNRCQYC
Sbjct: 119 NKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRDDKNCMIDKRQRNRCQYC 178
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RY KCL+MGMKREAVQEERQR KE+ EVESTSG +MP E+ILEAE V EP
Sbjct: 179 RYMKCLSMGMKREAVQEERQRVKEK-GEEVESTSGANNDMPTEQILEAELAV----EPKI 233
Query: 174 QDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
++ Q+ TNIC+A DKQLF LV+WAK IPHFT LPLEDQV+LLRAGWNELLIA FS
Sbjct: 234 DTYIDTQKDPVTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFS 293
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRSI+VKDGILLA G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+
Sbjct: 294 HRSIAVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIV 353
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LFNPD +GL + Q VE LREKVY SLEEY + + +EPGRFAKLLLRLP+LRSI
Sbjct: 354 LFNPDAKGLSAVQEVEQLREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSI 407
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/341 (67%), Positives = 263/341 (77%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 88 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 147
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 148 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 207
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTSG +MPVERILEAE V+ K E + + TN
Sbjct: 208 ERQRGKDRNENEVESTSGANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 267
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 268 ICQAADKQLFMLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 428
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/344 (67%), Positives = 262/344 (76%), Gaps = 18/344 (5%)
Query: 13 NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPY---PPNHPLCG-SKHLCSICGDRASGK 68
+ GG N S HS + + GS +SP P P G SKH+C+ICGDRASGK
Sbjct: 76 SPGGPNMTSP---QMHSPTSSLGSPTMMCLSPTGTSSPGMPHSGLSKHICAICGDRASGK 132
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA- 127
HYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKRQRNRCQYCRY KCL GMKREA
Sbjct: 133 HYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREAC 192
Query: 128 ----VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ-- 181
VQEERQR KE+ EVESTSG +MPVE+ILEAE V EP ++ Q+
Sbjct: 193 LSSAVQEERQRVKEKGDGEVESTSGANSDMPVEQILEAEIAV----EPKIDTYIDAQKEP 248
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LVDWAK IPHF LPLEDQV+LLRAGWNELLI FSHRS V DGI
Sbjct: 249 VTNICQAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGI 308
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD +GL+
Sbjct: 309 LLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQ 368
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
S Q VE LREKVY SLEEY + + +EPGRFAKLLLRLP+LRSI
Sbjct: 369 SVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSI 412
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/305 (71%), Positives = 251/305 (82%), Gaps = 6/305 (1%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
SP P P+ SKH+C ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR+ R+C+I
Sbjct: 97 SPRPSQTPMGLSKHICQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVI 156
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR+KE EV ST+ +MPVE+I EAE
Sbjct: 157 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSKEGKDGEVVSTTNPNEDMPVEKIQEAE 216
Query: 163 QRVDMKQEPADQDIVNE--QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
M EP D ++V + TNIC+A DKQL LV+WAK IPHF+ LP++DQV+LLRA
Sbjct: 217 ----MAVEPKDGNLVEQPNDPVTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRA 272
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLTELV+KMR+MKMD
Sbjct: 273 GWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMD 332
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR I+LFNPD +GL +VE LREKVY SLEEY + + E+PGRFAKLLLRLP
Sbjct: 333 KTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLP 392
Query: 341 SLRSI 345
+LRSI
Sbjct: 393 ALRSI 397
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 5/305 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 114 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 173
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NE ESTS +MPVERILEAE
Sbjct: 174 RQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSNGSEDMPVERILEAELA 233
Query: 165 VDMKQEPADQDIVNEQQ----ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 234 VEPKTE-AYSDVNTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 292
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 293 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 352
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E+PGRFAKLLLRLP
Sbjct: 353 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLP 412
Query: 341 SLRSI 345
+LRSI
Sbjct: 413 ALRSI 417
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/307 (71%), Positives = 252/307 (82%), Gaps = 8/307 (2%)
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
P PL +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKR
Sbjct: 26 PSGTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKR 85
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQYCRYQKCL MGMKREAVQEERQR KER NEVESTS +MPVE+ILEAE V
Sbjct: 86 QRNRCQYCRYQKCLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILEAELAV 145
Query: 166 DMKQE-------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
+ K E P + N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LL
Sbjct: 146 EPKTETYIETNVPMPSNSPNDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILL 204
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
RAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+
Sbjct: 205 RAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQ 264
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLR
Sbjct: 265 MDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLR 324
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 325 LPALRSI 331
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 142 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 201
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 202 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 261
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 262 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 321
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 322 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 381
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 382 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 441
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 442 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 482
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 5/305 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 130 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 189
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQ ++ER NE ESTSG +MPVERILEAE
Sbjct: 190 RQRNRCQYCRYQKCLAMGMKREAVQEERQGSRERSENEAESTSGGSEDMPVERILEAELA 249
Query: 165 VDMKQEPADQDIVNEQQ----ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 250 VEPKTE-AYSDVNTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 308
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 309 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 368
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E+PGRFAKLLLRLP
Sbjct: 369 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLP 428
Query: 341 SLRSI 345
+LRSI
Sbjct: 429 ALRSI 433
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/309 (69%), Positives = 257/309 (83%), Gaps = 10/309 (3%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
S YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C I
Sbjct: 100 SQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTI 159
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAV-----QEERQRTKERDSNEVESTSGTLIEMPVER 157
DKRQRNRCQYCRYQKCL+MGMKREAV +EERQRTK + +S G + +MP+ +
Sbjct: 160 DKRQRNRCQYCRYQKCLSMGMKREAVLVGAAEEERQRTKGDKEVDTDSALGGVNDMPISQ 219
Query: 158 ILEAEQRVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
I +AE + +P D + E A ++IC+A D+ L QLV+WAKHIPHFT L ++DQV+
Sbjct: 220 IRDAE----LNSDPTDDLLFEEGDAVSHICQAADRHLVQLVEWAKHIPHFTELSVDDQVI 275
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LL+AGWNELLIASFSHRS+ VKDGI+LA G+ V+RSSAH AGVG IFDRVL+ELV+KM+E
Sbjct: 276 LLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHHAGVGDIFDRVLSELVAKMKE 335
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
MKMDKTELGCLR+I+LFNPDV+GL + + +E+LREKVY +LEEYTR ++ ++PGRFAKLL
Sbjct: 336 MKMDKTELGCLRSIVLFNPDVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLL 395
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 396 LRLPALRSI 404
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 105 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 164
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 165 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 224
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 225 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 284
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 285 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 344
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 345 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 404
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 405 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 445
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 79 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 138
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 139 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 198
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 199 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 258
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 259 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 318
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 319 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 378
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 379 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 419
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 78 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 137
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 138 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 197
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 198 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 257
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 258 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 317
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 318 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 377
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 378 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 418
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 93 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 152
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 153 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 212
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 213 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 272
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 273 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 98 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 157
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 158 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 217
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 218 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 277
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 278 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 337
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 338 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 397
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 398 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 438
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/307 (71%), Positives = 254/307 (82%), Gaps = 20/307 (6%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNC+IDKRQRNRCQYC
Sbjct: 1 SKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYC 60
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL+MGMKREAVQEERQR KE++ NEVESTS +MP+ERILEAE RV EP D
Sbjct: 61 RYQKCLSMGMKREAVQEERQRNKEKNENEVESTSSIHNDMPLERILEAELRV----EPKD 116
Query: 174 QDIVNEQQ---------------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
+ I ++ + TN C+A ++QL QLV+WAKHIPHFT LP+EDQV LL
Sbjct: 117 EQIGDKHKHLPSFVMPFSAVQNTMTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLL 176
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
RAGWNELLIA+FSHRS++VKD I+LA G+ ++R+ AH AGVG IFDRVLTELV+KMREMK
Sbjct: 177 RAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMK 236
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
MD+TELGCLR IILFNP V+GL+S QV+E LRE+VY +LEEY + + +EPGRFAKLLLR
Sbjct: 237 MDRTELGCLRAIILFNP-VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLR 295
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 296 LPALRSI 302
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 264/339 (77%), Gaps = 4/339 (1%)
Query: 11 NFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKH 69
N G NS N+ SSS + + + YP P SKH+C+ICGDR+SGKH
Sbjct: 69 NMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGSLSKHICAICGDRSSGKH 128
Query: 70 YGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 129
YGVYSCEGCKGFFKRT+RKDL+Y CR+ ++C IDKRQRNRCQYCRYQKCL MGMKREAVQ
Sbjct: 129 YGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQ 188
Query: 130 EERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNIC 186
EERQR +ER NEV+S+S EMPVE+IL+AE V+ K E + ++ TNIC
Sbjct: 189 EERQRGRERSDNEVDSSSSFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNIC 248
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGILLA G
Sbjct: 249 QAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATG 308
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 309 LHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEV 368
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE YT+ N+ ++PGRFAKLLLRLP+LRSI
Sbjct: 369 EALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSI 407
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/380 (60%), Positives = 280/380 (73%), Gaps = 36/380 (9%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQD 175
CL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 132 CLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQG 191
Query: 176 I----------------------------VNEQQ--ATNICKATDKQLFQLVDWAKHIPH 205
+ N Q +NIC+A D+ L QLV+WAKHIPH
Sbjct: 192 VRLQVPLAPPDSEKCSFTLPFHPASEVPCANPLQDVVSNICQAADRHLVQLVEWAKHIPH 251
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
FT LP+EDQV+LL+AGWNELLIASFSHRS+ V+DGI+LA G+ ++RSSAH+AGVG IFDR
Sbjct: 252 FTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDR 311
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VL+ELV+KM+EMK+DKTELGCLR+I+LFNPD +GL VE+LREKVY +LEEYTR +
Sbjct: 312 VLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTY 371
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
+EPGRFAKLLLRLP+LRSI
Sbjct: 372 PDEPGRFAKLLLRLPALRSI 391
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/314 (70%), Positives = 254/314 (80%), Gaps = 7/314 (2%)
Query: 39 SSIISP----YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
SS+ SP Y N P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y C
Sbjct: 123 SSLGSPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTC 182
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
R+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR++E+ E ESTS T EMP
Sbjct: 183 RDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMP 242
Query: 155 VERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
VERILEAE VD K E D + N TNIC A DKQLF LV+WAK IP+F+ LPL
Sbjct: 243 VERILEAELAVDPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPYFSDLPL 302
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
EDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELV
Sbjct: 303 EDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELV 362
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
SKM++M MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGR
Sbjct: 363 SKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGR 422
Query: 332 FAKLLLRLPSLRSI 345
FAKLLLRLP+LRSI
Sbjct: 423 FAKLLLRLPALRSI 436
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLSSPMNPVSSTEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ +EVESTSG +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNESEVESTSGASEDMPVEKILEAELAVEPKTETYVEANMGLNPNSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH AGVG IFDRVLTELVSKMR+M MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRSSAHSAGVGAIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 88 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 147
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 148 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 207
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 208 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 267
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 268 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 428
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S G+ SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 229 STGNPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 288
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 289 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 348
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + V TN
Sbjct: 349 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANVGLNPSSPNDPVTN 408
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 409 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 468
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 469 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 528
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 529 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 569
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/314 (70%), Positives = 254/314 (80%), Gaps = 7/314 (2%)
Query: 39 SSIISP----YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
SS+ SP Y N P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y C
Sbjct: 123 SSLGSPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTC 182
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
R+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR++E+ E ESTS T EMP
Sbjct: 183 RDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMP 242
Query: 155 VERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
VERILEAE VD K E D + N TNIC A DKQLF LV+WAK IP+F+ LPL
Sbjct: 243 VERILEAELAVDPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPYFSDLPL 302
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
EDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELV
Sbjct: 303 EDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELV 362
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
SKM++M MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGR
Sbjct: 363 SKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGR 422
Query: 332 FAKLLLRLPSLRSI 345
FAKLLLRLP+LRSI
Sbjct: 423 FAKLLLRLPALRSI 436
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 88 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 147
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 148 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 207
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 208 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 267
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 268 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 428
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 264/339 (77%), Gaps = 4/339 (1%)
Query: 11 NFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKH 69
N G NS N+ SSS + + + YP P SKH+C+ICGDR+SGKH
Sbjct: 69 NMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGSLSKHICAICGDRSSGKH 128
Query: 70 YGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 129
YGVYSCEGCKGFFKRT+RKDL+Y CR+ ++C IDKRQRNRCQYCRYQKCL MGMKREAVQ
Sbjct: 129 YGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQ 188
Query: 130 EERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNIC 186
EERQR +ER NEV+S+S EMPVE+IL+AE V+ K E + ++ TNIC
Sbjct: 189 EERQRGRERSDNEVDSSSSFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNIC 248
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGILLA G
Sbjct: 249 QAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATG 308
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 309 LHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEV 368
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE YT+ N+ ++PGRFAKLLLRLP+LRSI
Sbjct: 369 EALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSI 407
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 251/304 (82%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 136 YPSTSPSSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 195
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NEVESTS +MPVERILEAE
Sbjct: 196 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAENEVESTSSGHEDMPVERILEAELA 255
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 256 VEPKTESYGDTNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 315
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 316 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 375
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGRFAKLLLRLP+
Sbjct: 376 SELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPA 435
Query: 342 LRSI 345
LRSI
Sbjct: 436 LRSI 439
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/354 (64%), Positives = 269/354 (75%), Gaps = 24/354 (6%)
Query: 16 GANSMSSFG-------SNNHSSSHNNGSSNSSIISPY-----------PPNHPLCGSKHL 57
G +S+SS G S +S N+ SS+ I P P L +KH+
Sbjct: 84 GPHSLSSPGMGYGPSVSPQLNSPMNSVSSSEDIKPPLGLNGMMKVPAKPSGMALSLTKHI 143
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++CIIDKRQRNRCQYCRYQK
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQK 203
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQR KE++ NEVESTS +MPVE+ILEAE+ V+ K E + +
Sbjct: 204 CLAMGMKREAVQEERQRAKEKNENEVESTSCVNEDMPVEKILEAEEAVEPKTETYIETNL 263
Query: 178 N------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFS
Sbjct: 264 SVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFS 323
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+
Sbjct: 324 HRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIV 383
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 384 LFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 437
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 79 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 138
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRC+YCRYQKCL MGMKREAVQE
Sbjct: 139 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCKYCRYQKCLAMGMKREAVQE 198
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 199 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 258
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 259 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 318
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 319 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 378
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 379 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 419
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 215 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 274
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 275 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 334
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + V TNIC
Sbjct: 335 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTEAYVEANVGLNPSSPNDPVTNIC 394
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 395 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 454
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 455 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 514
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 515 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 553
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/333 (67%), Positives = 257/333 (77%), Gaps = 28/333 (8%)
Query: 37 SNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
S S+ SP P+ P SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YAC
Sbjct: 104 SPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 163
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA--------------------VQEERQR 134
R+ RNC+IDKRQRNRCQYCRY KCL MGMKREA VQEERQR
Sbjct: 164 RDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREAINSSPSSGSSSISGLDPDEAVQEERQR 223
Query: 135 TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQ 192
KE+ EVESTS +MPVE++L+AE VD P ++ Q+ TNIC+A DKQ
Sbjct: 224 VKEKGEGEVESTSSANSDMPVEKVLDAELSVD----PKLDTYIDTQKDPVTNICQAADKQ 279
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
LF LV WA+ IPHFT LPLEDQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RS
Sbjct: 280 LFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLATGLHVHRS 339
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
SAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD +GL + Q VE LREK
Sbjct: 340 SAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREK 399
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VY SLEEY++ + +EPGRFAKLLLRLP+LRSI
Sbjct: 400 VYASLEEYSKTRYPDEPGRFAKLLLRLPALRSI 432
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 249/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 133 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 192
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NEVESTS +MPVERILEAE
Sbjct: 193 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERSENEVESTSSGHEDMPVERILEAELA 252
Query: 165 VDMKQEP---ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E + + TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 253 VEPKTESYGNTNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 312
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS++V+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 313 WNELLIASFSHRSVTVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 372
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGRFAKLLLRLP+
Sbjct: 373 SELGCLRAIVLFNPDAKGLSNPSEVEALREKVYATLEAYTKQKYPDQPGRFAKLLLRLPA 432
Query: 342 LRSI 345
LRSI
Sbjct: 433 LRSI 436
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/310 (70%), Positives = 253/310 (81%), Gaps = 3/310 (0%)
Query: 39 SSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGR 98
S ++ Y N P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ +
Sbjct: 125 SPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTK 184
Query: 99 NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERI 158
+C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR++E+ E ESTS T EMPVERI
Sbjct: 185 DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMPVERI 244
Query: 159 LEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
LEAE V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ LPLEDQV
Sbjct: 245 LEAELAVEPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPLEDQV 304
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM+
Sbjct: 305 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 364
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+M+MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKL
Sbjct: 365 DMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKL 424
Query: 336 LLRLPSLRSI 345
LLRLP+LRSI
Sbjct: 425 LLRLPALRSI 434
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 258/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ + P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 115 GSPQLSSPMNPASSSEDVKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 174
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 175 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 234
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR KER NEVESTS +MPVE+ILEAE V+ K + TNIC
Sbjct: 235 QRGKERSENEVESTSSASEDMPVEKILEAELAVEPKTGACVEASTGLHPSSPNDPVTNIC 294
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 295 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 354
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 355 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 414
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 415 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 453
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLSSPMNPVSSSEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R NEVESTS +MPVE+ILEAE V+ K E + V TNIC
Sbjct: 215 QRGKDRGENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/337 (67%), Positives = 257/337 (76%), Gaps = 32/337 (9%)
Query: 37 SNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
S S+ SP P+ P SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YAC
Sbjct: 104 SPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 163
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA------------------------VQE 130
R+ RNC+IDKRQRNRCQYCRY KCL MGMKREA VQE
Sbjct: 164 RDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREAINSSPSSGSSSISDLDPDEACLAAVQE 223
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKA 188
ERQR KE+ EVESTS +MPVE++L+AE VD P ++ Q+ TNIC+A
Sbjct: 224 ERQRVKEKGEGEVESTSSANSDMPVEKVLDAELSVD----PKLDTYIDTQKDPVTNICQA 279
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
DKQLF LV WA+ IPHFT LPLEDQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+
Sbjct: 280 ADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLATGLH 339
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD +GL + Q VE
Sbjct: 340 VHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEA 399
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LREKVY SLEEY++ + +EPGRFAKLLLRLP+LRSI
Sbjct: 400 LREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSI 436
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/339 (66%), Positives = 262/339 (77%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 120 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 179
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 180 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 239
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDI-----VNEQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E D ++ TNIC
Sbjct: 240 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVDANMGLNPNSPNDPVTNIC 299
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 300 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 359
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK+ELGCLR I+LFNPD +GL + V
Sbjct: 360 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNPDSKGLSNPAEV 419
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 420 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 458
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/349 (64%), Positives = 265/349 (75%), Gaps = 6/349 (1%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICG 62
P T TL+ S NS + S+ G + + +P + +KH+C+ICG
Sbjct: 85 PTTPTLVFGTGSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICG 144
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
DR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MG
Sbjct: 145 DRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMG 204
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN---- 178
MKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE V+ K E + +
Sbjct: 205 MKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPS 264
Query: 179 --EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+
Sbjct: 265 SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA 324
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 325 VKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD 384
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 385 SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/311 (69%), Positives = 253/311 (81%), Gaps = 10/311 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 125 PAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 184
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE
Sbjct: 185 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAE 244
Query: 163 QRVDMKQEP---ADQDIVNE---QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E A+ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 245 LAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 304
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 305 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 364
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLL
Sbjct: 365 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLL 424
Query: 337 LRLPSLRSIEV 347
LRLP+LRSI +
Sbjct: 425 LRLPALRSISL 435
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/356 (64%), Positives = 270/356 (75%), Gaps = 26/356 (7%)
Query: 16 GANSMS-------SFGSNNH--SSSHNNGSSNSSIISPYP-------PNHP----LCGSK 55
G +SMS FG+++ SS N SS+ I P P HP +K
Sbjct: 138 GPHSMSVPTTPTLGFGTSSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 197
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRY 115
H+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRY
Sbjct: 198 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 257
Query: 116 QKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQ 174
QKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE V+ K E D
Sbjct: 258 QKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVDA 317
Query: 175 DI-----VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
++ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIAS
Sbjct: 318 NMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIAS 377
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR
Sbjct: 378 FSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRA 437
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 438 IVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 493
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHPLCG----SKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/315 (69%), Positives = 257/315 (81%), Gaps = 7/315 (2%)
Query: 38 NSSIISPYPPNHPLCG-SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE 96
N + P P+ P+ +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+
Sbjct: 111 NGILKVPAHPSGPMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD 170
Query: 97 GRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVE 156
++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ NEVES+S +MPVE
Sbjct: 171 SKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNENEVESSSSANEDMPVE 230
Query: 157 RILEAEQRVDMKQEP---ADQDIVNEQQA---TNICKATDKQLFQLVDWAKHIPHFTTLP 210
+IL+AE V+ K E A+ + + TNIC+A DKQLF LV+WAK IPHF+ LP
Sbjct: 231 KILDAEHAVEPKTETYIEANMGLAPNSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELP 290
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
L+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTEL
Sbjct: 291 LDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTEL 350
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
VSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PG
Sbjct: 351 VSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPG 410
Query: 331 RFAKLLLRLPSLRSI 345
RFAKLLLRLP+LRSI
Sbjct: 411 RFAKLLLRLPALRSI 425
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHPLCG----SKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 85 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 144
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 145 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 204
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 205 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 264
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 265 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 324
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 325 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 384
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 385 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 423
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/339 (65%), Positives = 271/339 (79%), Gaps = 12/339 (3%)
Query: 1 MKPDTATLLV---NF-NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+ PDT +LL +F N+ G + S ++ + +N +S S+ + YPP+HPL GSKH
Sbjct: 13 VAPDTVSLLSPAPSFSNANGGPASPSISTSPFTIGSSNTTSLSTSPTQYPPSHPLSGSKH 72
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQ
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 117 KCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQ 174
KCL+MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 133 KCLSMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ 192
Query: 175 -DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
D+V +NIC+A D+ L QLV+WAKHIPHFT LP+EDQV+LL+AGWNELLIASFSHR
Sbjct: 193 GDVV-----SNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHR 247
Query: 234 SISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
SI V+DGI+LA G+ V+RSSAH+AGVG IFDRVL+ELVSKM+EMKMDKTELGCLR I+LF
Sbjct: 248 SIGVEDGIVLATGLVVHRSSAHQAGVGAIFDRVLSELVSKMKEMKMDKTELGCLRAIVLF 307
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
NPD +G+ VE+LREKVY +LEEYTR + +EPGRF
Sbjct: 308 NPDAKGVNCCSDVEILREKVYAALEEYTRTTYPDEPGRF 346
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/317 (69%), Positives = 251/317 (79%), Gaps = 18/317 (5%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
SP P P+ SKH+C ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR+ R+C+I
Sbjct: 145 SPRPSQTPMGLSKHICQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVI 204
Query: 103 DKRQRNRCQYCRYQKCLNMGMKRE------------AVQEERQRTKERDSNEVESTSGTL 150
DKRQRNRCQYCRYQKCL MGMKRE AVQEERQR+KE EV ST+
Sbjct: 205 DKRQRNRCQYCRYQKCLAMGMKREDVQDQRQGSGNSAVQEERQRSKEGKDGEVVSTTNPN 264
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTT 208
+MPVE+I EAE M EP D ++V + TNIC+A DKQL LV+WAK IPHF+
Sbjct: 265 EDMPVEKIQEAE----MAVEPKDGNMVEQPNDPVTNICQAADKQLVTLVEWAKRIPHFSD 320
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
LP++DQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLT
Sbjct: 321 LPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLT 380
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELV+KMR+MKMDKTELGCLR I+LFNPD +GL +VE LREKVY SLEEY + + E+
Sbjct: 381 ELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPEQ 440
Query: 329 PGRFAKLLLRLPSLRSI 345
PGRFAKLLLRLP+LRSI
Sbjct: 441 PGRFAKLLLRLPALRSI 457
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/295 (73%), Positives = 248/295 (84%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+CSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYC
Sbjct: 125 SKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYC 184
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR KER +EVESTS EMPV++IL+AE V+ K E +
Sbjct: 185 RYQKCLAMGMKREAVQEERQRGKERGESEVESTSSFNEEMPVDKILDAELAVEPKTETYS 244
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 245 DGSPSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 304
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 305 SHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 364
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 365 VLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSI 419
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/309 (70%), Positives = 251/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 23 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 82
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVERILEAE
Sbjct: 83 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAE 142
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + V TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 143 LAVEPKTETYVEANVGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 202
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 203 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 262
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 263 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLL 322
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 323 LRLPALRSI 331
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHPLCG----SKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 67 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGV 126
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 127 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 186
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 187 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 246
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 247 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 306
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 307 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 366
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 367 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 405
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/309 (70%), Positives = 252/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 116 PAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 175
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE
Sbjct: 176 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAE 235
Query: 163 QRVDMKQEP---ADQDIVNE---QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E A+ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 236 LAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 295
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 296 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 355
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLL
Sbjct: 356 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLL 415
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 416 LRLPALRSI 424
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 67 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 126
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 127 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 186
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 187 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 246
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 247 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 306
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 307 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 366
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 367 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 405
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 67 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 126
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 127 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 186
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 187 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 246
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 247 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 306
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 307 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 366
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 367 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 405
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/298 (71%), Positives = 248/298 (83%), Gaps = 6/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 116 SKHICTICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYC 175
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR K+++ NEVESTS +MPVE+ILEAEQ V+ K E
Sbjct: 176 RYQKCLAMGMKREAVQEERQRAKDKNENEVESTSCASEDMPVEKILEAEQAVEPKTETYI 235
Query: 174 QDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ ++ TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLRAGWNELLI
Sbjct: 236 ETNLSVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLI 295
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI +KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 296 ASFSHRSIGIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 355
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 356 RAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 413
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/330 (66%), Positives = 258/330 (78%), Gaps = 18/330 (5%)
Query: 34 NGSSNSSIISPYP--------PNHPLCG----SKHLCSICGDRASGKHYGVYSCEGCKGF 81
N S++ I P P P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGF
Sbjct: 125 NSVSSTEDIKPPPGINGILKVPMHPSGAMASFTKHICAICGDRSSGKHYGVYSCEGCKGF 184
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
FKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ N
Sbjct: 185 FKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNEN 244
Query: 142 EVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQ 195
EVES++ +MPVE+ILEAE V+ K E + + TNIC+A DKQLF
Sbjct: 245 EVESSNSANEDMPVEKILEAEHAVEPKTETYTEANMGLAPNSPSDPVTNICQAADKQLFT 304
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH
Sbjct: 305 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 364
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY
Sbjct: 365 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYA 424
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 425 SLEAYCKQKYPEQPGRFAKLLLRLPALRSI 454
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/349 (65%), Positives = 266/349 (76%), Gaps = 19/349 (5%)
Query: 16 GANSMSSFGSNNH--SSSHNNGSSNSSIISPYP-------PNHPLCG----SKHLCSICG 62
G + FG+N+ +S N SS I P P HP +KH+C+ICG
Sbjct: 69 GPSPGLGFGTNSPQLNSPMNPVSSTEDIKPPLGINGVLKVPVHPSSAMASFTKHICAICG 128
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
DR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MG
Sbjct: 129 DRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMG 188
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP---ADQDIVNE 179
MKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE V+ K E A+ +
Sbjct: 189 MKREAVQEERQRGKDRNENEVESTSNANEDMPVEKILEAELAVEPKTETYIEANMGLTPN 248
Query: 180 ---QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+
Sbjct: 249 SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA 308
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 309 VKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD 368
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 369 SKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 417
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/354 (64%), Positives = 268/354 (75%), Gaps = 24/354 (6%)
Query: 16 GANSMSSFG-------SNNHSSSHNNGSSNSSIISPY-----------PPNHPLCGSKHL 57
G +SM+S G S +S N+ SS I P P + L +KH+
Sbjct: 394 GPHSMNSPGMGYGPSVSPQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSSTALSLTKHI 453
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQK
Sbjct: 454 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQK 513
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL MGMKREAVQEERQR K+++ NEVESTS +MPVE+ILEAE+ V+ K E + +
Sbjct: 514 CLAMGMKREAVQEERQRAKDKNENEVESTSCANEDMPVEKILEAEEAVEPKTETYIETNL 573
Query: 178 N------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFS
Sbjct: 574 GVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS 633
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
HRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+
Sbjct: 634 HRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIV 693
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 694 LFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 747
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 117 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGKHYGV 176
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 177 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 236
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 237 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLNPNSPNDPVTNIC 296
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 297 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 356
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 357 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 416
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 417 EALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 455
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/295 (73%), Positives = 247/295 (83%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C IDKRQRNRCQYC
Sbjct: 125 SKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECPIDKRQRNRCQYC 184
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR KER NEVESTS +MPV++IL+AE V+ K E +
Sbjct: 185 RYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEDMPVDKILDAELAVEPKTETYS 244
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 245 DGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 304
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 305 SHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 364
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 365 VLFNPDAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSI 419
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/295 (72%), Positives = 247/295 (83%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYC
Sbjct: 127 SKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYC 186
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR KER NEVEST EMPV++IL+AE V+ K E +
Sbjct: 187 RYQKCLAMGMKREAVQEERQRGKERGENEVESTCSFNEEMPVDKILDAELAVEPKTETYS 246
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 247 DSSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASF 306
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 307 SHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 366
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 367 VLFNPDAKGLSNPSEVEALREKVYASLEAYTKQKYPDQPGRFAKLLLRLPALRSI 421
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/295 (72%), Positives = 247/295 (83%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+CSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C+IDKRQRNRCQYC
Sbjct: 125 SKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKECVIDKRQRNRCQYC 184
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR +ER +EVESTS EMPV++IL+AE V+ K E +
Sbjct: 185 RYQKCLAMGMKREAVQEERQRGRERGESEVESTSSFNEEMPVDKILDAELAVEPKTETYS 244
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 245 DGSPSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 304
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 305 SHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 364
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKL+ RLP+LRSI
Sbjct: 365 VLFNPDAKGLSNPPEVEALREKVYASLESYTKQKYPDQPGRFAKLVFRLPALRSI 419
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/304 (71%), Positives = 250/304 (82%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 88 YPSTSPGSLVKHVCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDK 147
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +EVE TSG +MPVERILEAE
Sbjct: 148 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERADSEVECTSGGHEDMPVERILEAELA 207
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 208 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSGLTLEDQVILLRAG 267
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 268 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 327
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 328 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 387
Query: 342 LRSI 345
LRSI
Sbjct: 388 LRSI 391
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/332 (65%), Positives = 258/332 (77%), Gaps = 22/332 (6%)
Query: 33 NNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY 92
N SS +++ S +P HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y
Sbjct: 87 NGPSSAAAVDSRFPATHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 146
Query: 93 ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI- 151
ACRE R C++DKRQRNRCQYCRYQKCL GMKREAVQEERQR K+R+ NEVESTSG
Sbjct: 147 ACREERRCVVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTSGGGGG 206
Query: 152 --------------EMPVERILEAEQRVDMKQEPADQ----DIVNEQQATNICKATDKQL 193
+MP++RILEAE RVD +PA D + ++C+A D+QL
Sbjct: 207 GGGVCVGGAGPGSPDMPLDRILEAEMRVD---QPASSVPSADASSRDPVNSMCQAADRQL 263
Query: 194 FQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSS 253
+LV WA+ IPHF LP+ED+ LL+AGWNELLIA+FSHRS++ +DGI+LA G+ V R S
Sbjct: 264 HELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHS 323
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
AH AGVG IFDRVL ELV+KMR+MKMDKTELGCLR ++LFNPD +GLKS + VEMLREKV
Sbjct: 324 AHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKV 383
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y +LEE+ + +H ++PGRF KLLLRLP+LRSI
Sbjct: 384 YAALEEHCKRHHPDQPGRFGKLLLRLPALRSI 415
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 96 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGKHYGV 155
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 156 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 215
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 216 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLNPNSPNDPVTNIC 275
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 276 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 335
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 336 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 395
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 396 EALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 434
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/309 (70%), Positives = 251/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 125 PAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 184
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE
Sbjct: 185 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAE 244
Query: 163 QRVDMKQEP---ADQDIVNE---QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E A+ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 245 LAVEPKTEAYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 304
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 305 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 364
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLL
Sbjct: 365 MLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLL 424
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 425 LRLPALRSI 433
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/361 (62%), Positives = 270/361 (74%), Gaps = 23/361 (6%)
Query: 1 MKPDTATLLV-NFNSGGANSMSSFG---SNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+KPDT + NF+ G NS S +N ++ G + +S SPYPPNHPL GSKH
Sbjct: 28 IKPDTGLINTGNFSPSGPNSPGSLNLGCPSNMITTSPGGQNKTSAGSPYPPNHPLSGSKH 87
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE ++C+IDKRQRNRCQYCRYQ
Sbjct: 88 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKHCLIDKRQRNRCQYCRYQ 147
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEV------------ESTSGTLIEMPVERILEAEQR 164
KCL MGMKREAVQEERQRTKER+ STS + +MPVE ILEAE+R
Sbjct: 148 KCLTMGMKREAVQEERQRTKEREREAAGGGGAAGSEAVESSTSSSHADMPVELILEAEKR 207
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ E N+ +KQ+ +V+WAK +P FT+LPLEDQ LLRAGWNE
Sbjct: 208 FEYLAE-------NQASYEQFDNHNNKQMRYMVEWAKRLPQFTSLPLEDQARLLRAGWNE 260
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
L IA+FSHRSI ++DGI+L G T++++SA +AGVG IF+RVLTELV KM+ MKMDKTEL
Sbjct: 261 LQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQAGVGAIFERVLTELVHKMKSMKMDKTEL 320
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNP+VRGLK+ Q V+MLREKVY +L+EYTR++ +EPGRFAKLLLRLP+LRS
Sbjct: 321 GCLRAIILFNPEVRGLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRS 380
Query: 345 I 345
I
Sbjct: 381 I 381
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/309 (70%), Positives = 251/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 23 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 82
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVERILEAE
Sbjct: 83 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAE 142
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 143 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 202
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 203 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 262
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 263 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 322
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 323 LRLPALRSI 331
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/313 (70%), Positives = 254/313 (81%), Gaps = 26/313 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNC+IDKRQRNRCQYC
Sbjct: 1 SKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYC 60
Query: 114 RYQKCLNMGMKREA------VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
RYQKCL+MGMKREA VQEERQR KE++ NEVESTS +MP+ERILEAE RV
Sbjct: 61 RYQKCLSMGMKREALFVSAAVQEERQRNKEKNENEVESTSSIHNDMPLERILEAELRV-- 118
Query: 168 KQEPADQDIVNEQQ---------------ATNICKATDKQLFQLVDWAKHIPHFTTLPLE 212
EP D+ I ++ + TN C+A ++QL QLV+WAKHIPHFT LP+E
Sbjct: 119 --EPKDEQIGDKHKHLPSFVMPFSAVQNTMTNFCQAANQQLIQLVEWAKHIPHFTELPIE 176
Query: 213 DQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVS 272
DQV LLRAGWNELLIA+FSHRS++VKD I+LA G+ ++R+ AH AGVG IFDRVLTELV+
Sbjct: 177 DQVTLLRAGWNELLIAAFSHRSVNVKDSIVLATGLQIHRTDAHSAGVGTIFDRVLTELVA 236
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
KMREMKMD+TELGCLR IILFNP V+GL+S QV+E LRE+VY +LEEY + + +EPGRF
Sbjct: 237 KMREMKMDRTELGCLRAIILFNP-VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRF 295
Query: 333 AKLLLRLPSLRSI 345
AKLLLRLP+LRSI
Sbjct: 296 AKLLLRLPALRSI 308
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 61 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGKHYGV 120
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 121 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 180
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 181 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLNPNSPNDPVTNIC 240
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 241 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 300
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 301 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 360
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 361 EALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 399
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/309 (70%), Positives = 251/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 23 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 82
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVERILEAE
Sbjct: 83 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAE 142
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 143 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 202
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 203 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 262
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 263 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVYASLEAYCKHKYPEQPGRFAKLL 322
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 323 LRLPALRSI 331
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 259/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 2 GSPQLSSPMNPVSSSEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 61
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRT RKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 62 YSCEGCKGFFKRTARKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 121
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R NEVESTS +MPVE+ILEAE V+ K E + V TNIC
Sbjct: 122 QRGKDRGENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTNIC 181
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 182 QAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 241
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 242 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 301
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 302 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 340
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/309 (70%), Positives = 251/309 (81%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 97 PAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 156
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAE
Sbjct: 157 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAE 216
Query: 163 QRVDMKQEP---ADQDIVNE---QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E A+ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 217 LAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 276
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 277 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 336
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLL
Sbjct: 337 MLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLL 396
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 397 LRLPALRSI 405
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/332 (65%), Positives = 258/332 (77%), Gaps = 22/332 (6%)
Query: 33 NNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY 92
N SS +++ S +P HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y
Sbjct: 59 NGPSSAAAVDSRFPATHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 118
Query: 93 ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI- 151
ACRE R C++DKRQRNRCQYCRYQKCL GMKREAVQEERQR K+R+ NEVESTSG
Sbjct: 119 ACREERRCVVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTSGGGGG 178
Query: 152 --------------EMPVERILEAEQRVDMKQEPADQ----DIVNEQQATNICKATDKQL 193
+MP++RILEAE RVD +PA D + ++C+A D+QL
Sbjct: 179 GGGVCVGGAGPGSPDMPLDRILEAEMRVD---QPASSVPSADASSRDPVNSMCQAADRQL 235
Query: 194 FQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSS 253
+LV WA+ IPHF LP+ED+ LL+AGWNELLIA+FSHRS++ +DGI+LA G+ V R S
Sbjct: 236 HELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHS 295
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
AH AGVG IFDRVL ELV+KMR+MKMDKTELGCLR ++LFNPD +GLKS + VEMLREKV
Sbjct: 296 AHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKV 355
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y +LEE+ + +H ++PGRF KLLLRLP+LRSI
Sbjct: 356 YAALEEHCKRHHPDQPGRFGKLLLRLPALRSI 387
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/361 (62%), Positives = 270/361 (74%), Gaps = 23/361 (6%)
Query: 1 MKPDTATLLV-NFNSGGANSMSSFG---SNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+KPDT + NF+ G NS S +N ++ G + +S SPYPPNHPL GSKH
Sbjct: 14 IKPDTGLINTGNFSPSGPNSPGSLNLGCPSNMITTSPGGQNKTSAGSPYPPNHPLSGSKH 73
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE ++C+IDKRQRNRCQYCRYQ
Sbjct: 74 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKHCLIDKRQRNRCQYCRYQ 133
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEV------------ESTSGTLIEMPVERILEAEQR 164
KCL MGMKREAVQEERQRTKER+ STS + +MPVE ILEAE+R
Sbjct: 134 KCLTMGMKREAVQEERQRTKEREREAAGGGGAAGSEAVESSTSSSHADMPVELILEAEKR 193
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ E N+ +KQ+ +V+WAK +P FT+LPLEDQ LLRAGWNE
Sbjct: 194 FEYLAE-------NQASYEQFDNHNNKQMRYMVEWAKRLPQFTSLPLEDQARLLRAGWNE 246
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
L IA+FSHRSI ++DGI+L G T++++SA +AGVG IF+RVLTELV KM+ MKMDKTEL
Sbjct: 247 LQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQAGVGAIFERVLTELVHKMKSMKMDKTEL 306
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNP+VRGLK+ Q V+MLREKVY +L+EYTR++ +EPGRFAKLLLRLP+LRS
Sbjct: 307 GCLRAIILFNPEVRGLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRS 366
Query: 345 I 345
I
Sbjct: 367 I 367
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/304 (70%), Positives = 248/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +EVE G +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEVECAGGGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 248/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNVENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/297 (72%), Positives = 248/297 (83%), Gaps = 6/297 (2%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCR
Sbjct: 1 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKHCVIDKRQRNRCQYCR 60
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL MGMKREAVQEERQR KER+ NEVESTS +MPVE+ILEAEQ V+ K E +
Sbjct: 61 YQKCLAMGMKREAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEPKAETYIE 120
Query: 175 DIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIA
Sbjct: 121 TNLGVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA 180
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
SFSHRSI++KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR
Sbjct: 181 SFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLR 240
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 241 AIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSI 297
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/309 (69%), Positives = 250/309 (80%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 155 PAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 214
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K + NEVESTS +MPVE+ILEAE
Sbjct: 215 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKTVNENEVESTSSANEDMPVEKILEAE 274
Query: 163 QRVDMKQEP---ADQDIVNEQQ---ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E A+ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 275 LAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 334
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 335 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 394
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + ++PGRFAKLL
Sbjct: 395 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLL 454
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 455 LRLPALRSI 463
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/298 (71%), Positives = 248/298 (83%), Gaps = 6/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 132 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCVIDKRQRNRCQYC 191
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAEQ V+ K E
Sbjct: 192 RYQKCLAMGMKREAVQEERQRAKDRNENEVESTSCANEDMPVEKILEAEQAVEPKTETYI 251
Query: 174 QDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLRAGWNELLI
Sbjct: 252 ETNLGVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELLLDDQVILLRAGWNELLI 311
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI++KDGILLA G+ V+R++AH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 312 ASFSHRSIAIKDGILLATGLHVHRNNAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 371
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 372 RAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 429
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/295 (73%), Positives = 247/295 (83%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C IDKRQRNRCQYC
Sbjct: 79 SKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECPIDKRQRNRCQYC 138
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR KER NEVESTS +MPV++IL+AE V+ K E +
Sbjct: 139 RYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEDMPVDKILDAELAVEPKTETYS 198
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 199 DGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 258
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 259 SHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 318
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 319 VLFNPDAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSI 373
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/310 (70%), Positives = 252/310 (81%), Gaps = 4/310 (1%)
Query: 39 SSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGR 98
S ++ Y N P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ +
Sbjct: 110 SPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTK 169
Query: 99 NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERI 158
+C+IDKRQRNRCQYCRYQKCL MGMKRE VQEERQR++E+ E ESTS T EMPVERI
Sbjct: 170 DCLIDKRQRNRCQYCRYQKCLAMGMKRE-VQEERQRSREKSDTEAESTSSTSEEMPVERI 228
Query: 159 LEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
LEAE V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ LPLEDQV
Sbjct: 229 LEAELAVEPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPLEDQV 288
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM+
Sbjct: 289 ILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMK 348
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+M+MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKL
Sbjct: 349 DMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKL 408
Query: 336 LLRLPSLRSI 345
LLRLP+LRSI
Sbjct: 409 LLRLPALRSI 418
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E +G +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATGGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/302 (72%), Positives = 246/302 (81%), Gaps = 7/302 (2%)
Query: 47 PNHPLCG-SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
P P G SKH+C+ICGDRASGKHY VYSCEGCKGFFKRTVRKD +YACR+ +NC+IDKR
Sbjct: 108 PGMPHSGLSKHICAICGDRASGKHYRVYSCEGCKGFFKRTVRKDPTYACRDDKNCMIDKR 167
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQ+CRY KCL GMKREAVQEERQR KE+ EVESTSG +MPVE +LEAE V
Sbjct: 168 QRNRCQFCRYMKCLAQGMKREAVQEERQRVKEKGDGEVESTSGANSDMPVEHVLEAEVAV 227
Query: 166 DMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
EP V+ Q+ TNIC+A DKQLF LV+WAK IPHF LPLEDQV+LLRAGWN
Sbjct: 228 ----EPKIDTYVDVQKDPVTNICQAADKQLFTLVEWAKRIPHFIELPLEDQVILLRAGWN 283
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
ELLIA FSHRS V DGILLA G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTE
Sbjct: 284 ELLIAGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTE 343
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
LGCLR I+LFNPD +GL++ Q VE LREKVY SLEEY + + +EPGRFAKLLLRLP+LR
Sbjct: 344 LGCLRAIVLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALR 403
Query: 344 SI 345
SI
Sbjct: 404 SI 405
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASNGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 110 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDK 169
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 170 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 229
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 230 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 289
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 290 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 349
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 350 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 409
Query: 342 LRSI 345
LRSI
Sbjct: 410 LRSI 413
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESCGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGALVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E + S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAKGASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 AELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 114 YPSTSPGALVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 173
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E + S +MPVERILEAE
Sbjct: 174 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAKGASSGHEDMPVERILEAELA 233
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 234 VEPKTESYGDVNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 293
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 294 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 353
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 354 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 413
Query: 342 LRSI 345
LRSI
Sbjct: 414 LRSI 417
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/385 (59%), Positives = 279/385 (72%), Gaps = 41/385 (10%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQ-----EERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQE 170
CL MGMKREAVQ ERQRTK ++ + ES+ G + +MP+ I EAE VD + ++
Sbjct: 132 CLTMGMKREAVQVGAVEGERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQ 191
Query: 171 PADQDI----------------------------VNEQQ--ATNICKATDKQLFQLVDWA 200
P DQ + N Q +NIC+A D+ L QLV+WA
Sbjct: 192 PLDQGVRLQVPLAPPDSEKCSFTLPFHPASEVPCANPLQDVVSNICQAADRHLVQLVEWA 251
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
KHIPHFT LP+EDQV+LL+AGWNELLIASFSHRS+ V+DGI+LA G+ ++RSSAH+AGVG
Sbjct: 252 KHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVG 311
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
IFDRVL+ELV+KM+EMK+DKTELGCLR+I+LFNPD +GL VE+LREKVY +LEEY
Sbjct: 312 AIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEY 371
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
TR + +EPGRFAKLLLRLP+LRSI
Sbjct: 372 TRTTYPDEPGRFAKLLLRLPALRSI 396
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/305 (71%), Positives = 246/305 (80%), Gaps = 8/305 (2%)
Query: 47 PNHPLCG-SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
P P G SKH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKR
Sbjct: 108 PGMPHSGLSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKR 167
Query: 106 QRNRCQYCRYQKCLNMGMKREA-----VQEERQRTKERDSNEVESTSGTLIEMPVERILE 160
QRNRCQ+CRY KCL GMKREA VQEERQR KE+ EVESTSG +MPVE +LE
Sbjct: 168 QRNRCQFCRYMKCLAQGMKREACLSTAVQEERQRVKEKGDGEVESTSGANSDMPVEHVLE 227
Query: 161 AEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
AE V K + V + TNIC+A DKQLF LV+WAK IPHF LPLEDQV+LLRA
Sbjct: 228 AEVAVGPKIDTYVD--VQKDPVTNICQAADKQLFTLVEWAKRIPHFIELPLEDQVILLRA 285
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIA FSHRS V DGILLA G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMD
Sbjct: 286 GWNELLIAGFSHRSTQVTDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMD 345
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR I+LFNPD +GL++ Q VE LREKVY SLEEY + + +EPGRFAKLLLRLP
Sbjct: 346 KTELGCLRAIVLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLP 405
Query: 341 SLRSI 345
+LRSI
Sbjct: 406 ALRSI 410
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/300 (71%), Positives = 245/300 (81%), Gaps = 5/300 (1%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 85 PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 144
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR K+RD EVESTS EMPVE+ILEAE V+ K
Sbjct: 145 CQYCRYQKCLAMGMKREAVQEERQRNKDRD-GEVESTSAVNEEMPVEKILEAEMAVEQKT 203
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 204 ELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 263
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 264 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELG 323
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 324 CLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSI 383
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 248/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 3 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 62
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S + +MPVERILEAE
Sbjct: 63 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILEAELA 122
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 123 VEPKTESYGDMNVENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 182
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 183 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 242
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 243 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 302
Query: 342 LRSI 345
LRSI
Sbjct: 303 LRSI 306
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNVENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH GVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSRGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/329 (65%), Positives = 254/329 (77%), Gaps = 20/329 (6%)
Query: 34 NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 93
+G S +P HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YA
Sbjct: 49 DGQPXXXXXSRFPATHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 108
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI-- 151
CRE R C++DKRQRNRCQYCRYQKCL GMKREAVQEERQR K+R+ NEVESTSG
Sbjct: 109 CREERRCVVDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAKDRNDNEVESTSGGGGGG 168
Query: 152 -----------EMPVERILEAEQRVDMKQEPADQ----DIVNEQQATNICKATDKQLFQL 196
+MP++RILEAE RVD +PA D + ++C+A D+QL +L
Sbjct: 169 GGVGGAGPGSPDMPLDRILEAEMRVD---QPASSVPSADASSRDPVNSMCQAADRQLHEL 225
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V WA+ IPHF LP+ED+ LL+AGWNELLIA+FSHRS++ +DGI+LA G+ V R SAH
Sbjct: 226 VQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLATGLVVQRHSAHS 285
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
AGVG IFDRVL ELV+KMR+MKMDKTELGCLR ++LFNPD +GLKS + VEMLREKVY +
Sbjct: 286 AGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKVYAA 345
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LEE+ + +H ++PGRF KLLLRLP+LRSI
Sbjct: 346 LEEHCKRHHPDQPGRFGKLLLRLPALRSI 374
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/298 (70%), Positives = 247/298 (82%), Gaps = 6/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 100 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 159
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR K+R+ +EVE TS +MPVE+ILEAE V+ K +
Sbjct: 160 RYQKCLAMGMKREAVQEERQRGKDRNESEVEPTSSANEDMPVEKILEAELAVEPKTDTYV 219
Query: 174 QDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ + TNIC+A DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 220 EANMGLSPSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLI 279
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 280 ASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 339
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 340 RAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 397
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/295 (72%), Positives = 246/295 (83%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+CSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYC
Sbjct: 123 SKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDCKECLIDKRQRNRCQYC 182
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEERQR +ER +EVESTS EMP ++IL+AE V+ K E +
Sbjct: 183 RYQKCLAMGMKREAVQEERQRGRERGESEVESTSSFNEEMPADKILDAEVAVEPKTETYS 242
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV LLRAGWNELLIASF
Sbjct: 243 DGSPSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVFLLRAGWNELLIASF 302
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS++VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I
Sbjct: 303 SHRSVTVKDGILLATGLHVHRNSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAI 362
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 363 VLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSI 417
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 94 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 153
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 154 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 213
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 214 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 273
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 274 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 333
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 334 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEXYTKQKYPEQPGRFAKLLLRLPA 393
Query: 342 LRSI 345
LRSI
Sbjct: 394 LRSI 397
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/295 (73%), Positives = 247/295 (83%), Gaps = 7/295 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K +C++CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ RNC++DKRQRNRCQYC
Sbjct: 156 NKSICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDRNCMVDKRQRNRCQYC 215
Query: 114 RYQKCLNMGMKREAVQEERQRT-KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
RYQKCL MGM+REAVQEERQR K ++VESTSGT +MPVE+IL+AE V EP
Sbjct: 216 RYQKCLGMGMRREAVQEERQRKDKPTGDSQVESTSGTSNDMPVEKILDAELAV----EPN 271
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+ V+ + TNIC+A DKQLF LV+WAK IPHFT LPL+DQV LLRAGWNELLIA+F
Sbjct: 272 NGPYVDTPRDPVTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAF 331
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI VKDGILLA G+ V+R+SAH AGVG IFDRVLTELV+KMREMKMDKTELGCLR I
Sbjct: 332 SHRSIQVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAI 391
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD + L S Q VE LREKVY SLEEY R +++EPGRFAKLLLRLP+LRSI
Sbjct: 392 VLFNPDAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSI 446
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/330 (67%), Positives = 259/330 (78%), Gaps = 14/330 (4%)
Query: 26 NNHSSSHN-------NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGC 78
NN SSS + G N + +S P PL KH+C+ICGDR+SGKHYGVYSCEGC
Sbjct: 130 NNVSSSEDIKPLPGLPGIGNMNYLSTSP--GPLV--KHICAICGDRSSGKHYGVYSCEGC 185
Query: 79 KGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER 138
KGFFKRT+RKDL Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR++ER
Sbjct: 186 KGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRER 245
Query: 139 DSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQ 195
+E ES S +MPVERILEAE V+ K E D ++ N TNIC A DKQLF
Sbjct: 246 AESEAESASNGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFT 305
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK IPHF+ L LEDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH
Sbjct: 306 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 365
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
AGVG IFDRVLTELVSKM++M+MDK+ELGCLR I+LFNPD +GL + VE LREKVY
Sbjct: 366 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYA 425
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LE YT+ + E+PGRFAKLLLRLP+LRSI
Sbjct: 426 TLEAYTKQKYPEQPGRFAKLLLRLPALRSI 455
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/342 (63%), Positives = 266/342 (77%), Gaps = 15/342 (4%)
Query: 1 MKPDTATLL----VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+ PDT +LL N+ G + S ++ + +N S S+ + YPP+HPL GSKH
Sbjct: 13 VAPDTVSLLSPAPAFSNANGGPASPSISTSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKH 72
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQ
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 117 KCLNMGMKREAVQ---EERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEP 171
KCL+MGMKREAVQ EERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P
Sbjct: 133 KCLSMGMKREAVQTFQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQP 192
Query: 172 ADQ-DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
DQ D+V +NIC+A D+ L QLV+WAKHIPHFT LP+EDQV+LL+AGWNELLIASF
Sbjct: 193 LDQGDVV-----SNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASF 247
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+ V+DGI+LA G+ V+RSSAH+AGVG IFDRVL+ELV+K++EMKMDKTELGCLR I
Sbjct: 248 SHRSMGVEDGIVLATGLVVHRSSAHQAGVGAIFDRVLSELVAKVKEMKMDKTELGCLRAI 307
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+LFNPD +G+ VE+LREKVY +LEE TR + EPGRF
Sbjct: 308 VLFNPDAKGVTCCSDVEILREKVYAALEESTRTTYPGEPGRF 349
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/295 (72%), Positives = 247/295 (83%), Gaps = 7/295 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K +C++CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ RNC++DKRQRNRCQYC
Sbjct: 158 NKSICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDRNCMVDKRQRNRCQYC 217
Query: 114 RYQKCLNMGMKREAVQEERQRT-KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
RYQKC+ MGM+REAVQEERQR K ++VESTSGT +MPVE+IL+AE V EP
Sbjct: 218 RYQKCIGMGMRREAVQEERQRKDKPTGDSQVESTSGTSNDMPVEKILDAELAV----EPN 273
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+ V+ + TNIC+A DKQLF LV+WAK IPHFT LPL+DQV LLRAGWNELLIA+F
Sbjct: 274 NGPYVDTPRDPVTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAF 333
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI VKDGILLA G+ V+R+SAH AGVG IFDRVLTELV+KMREMKMDKTELGCLR I
Sbjct: 334 SHRSIQVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAI 393
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD + L S Q VE LREKVY SLEEY R +++EPGRFAKLLLRLP+LRSI
Sbjct: 394 VLFNPDAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSI 448
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 110 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 169
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 170 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSGHEDMPVERILEAELA 229
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 230 VEPKTESYGDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 289
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 290 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 349
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 350 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 409
Query: 342 LRSI 345
LRSI
Sbjct: 410 LRSI 413
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 245/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDI--VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/309 (68%), Positives = 250/309 (80%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 44 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 103
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ +EVE TS +MPVE+ILEAE
Sbjct: 104 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNESEVEPTSSANEDMPVEKILEAE 163
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K + + + TNIC+A DKQLF LV+WAK +PHF+ LPL+DQV+
Sbjct: 164 LAVEPKTDTYVEANMGLSPSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVI 223
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 224 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 283
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 284 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 343
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 344 LRLPALRSI 352
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E + + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEADCANSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNLENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++ +MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDTQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR ++LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAVVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 3 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 62
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 63 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 122
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 123 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 182
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 183 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 242
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 243 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 302
Query: 342 LRSI 345
LRSI
Sbjct: 303 LRSI 306
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/340 (64%), Positives = 260/340 (76%), Gaps = 4/340 (1%)
Query: 10 VNFNSGGANSMSSFGSN-NHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+ FN+ + M+S N N G + +S Y P SKH+C+ICGDR+SGK
Sbjct: 79 MGFNTLNSPQMNSLSMNGNEDIKPPPGLAPLGNMSSYQCTSPGSLSKHICAICGDRSSGK 138
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYGVYSCEGCKGFFKRT+RKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGMKREAV
Sbjct: 139 HYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAV 198
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNI 185
QEERQR KE+ EVE+TS +MPV++IL+AE V+ K E + + TNI
Sbjct: 199 QEERQRGKEKSDTEVETTSRFNEDMPVDKILDAELSVEPKTETYTESSPSNSTNDPVTNI 258
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP 245
C A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILL
Sbjct: 259 CHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGT 318
Query: 246 GVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQV 305
G+ V+RSSAH AGVG IF+RVLTELVSKM++M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 319 GLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLE 378
Query: 306 VEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 379 VEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSI 418
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +L YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLGAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/293 (73%), Positives = 245/293 (83%), Gaps = 3/293 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K +C++CGDRASGKHYGVYSCEGCKGFFKRTVRKDL YACR+ +NCI+DKRQRNRCQYC
Sbjct: 174 NKTVCAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLHYACRDEKNCIVDKRQRNRCQYC 233
Query: 114 RYQKCLNMGMKREAVQEERQRT-KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
RYQKC+ MGM+REAVQEERQR K EVESTS +MPVE+ILEAE V+ K +
Sbjct: 234 RYQKCIAMGMRREAVQEERQRKDKAGGDGEVESTSNANSDMPVEKILEAEIHVEPKTD-T 292
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D N+ TNIC+A DKQLF LV+WAK IPHFT LPL+DQV+LLRAGWNELLIA+FSH
Sbjct: 293 YVDTPNDP-VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVILLRAGWNELLIAAFSH 351
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+L
Sbjct: 352 RSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVL 411
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
FNPD + L + Q VE LREKVY SLEEY R + +EPGRFAKLLLRLP+LRSI
Sbjct: 412 FNPDAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSI 464
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/309 (68%), Positives = 245/309 (79%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 97 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 156
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R E E S +MPVE+ILEAE
Sbjct: 157 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRSEAEAEPASSANEDMPVEKILEAE 216
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 217 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 276
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 277 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 336
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 337 MHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 396
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 397 LRLPALRSI 405
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 3 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 62
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 63 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 122
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 123 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 182
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 183 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 242
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 243 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 302
Query: 342 LRSI 345
LRSI
Sbjct: 303 LRSI 306
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/293 (73%), Positives = 245/293 (83%), Gaps = 3/293 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K +C++CGDRASGKHYGVYSCEGCKGFFKRTVRKDL YACR+ +NCI+DKRQRNRCQYC
Sbjct: 208 NKTVCAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLHYACRDEKNCIVDKRQRNRCQYC 267
Query: 114 RYQKCLNMGMKREAVQEERQRT-KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
RYQKC+ MGM+REAVQEERQR K EVESTS +MPVE+ILEAE V+ K +
Sbjct: 268 RYQKCIAMGMRREAVQEERQRKDKAGGDGEVESTSNANSDMPVEKILEAEIHVEPKTD-T 326
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D N+ TNIC+A DKQLF LV+WAK IPHFT LPL+DQV+LLRAGWNELLIA+FSH
Sbjct: 327 YVDTPNDP-VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVILLRAGWNELLIAAFSH 385
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+L
Sbjct: 386 RSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVL 445
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
FNPD + L + Q VE LREKVY SLEEY R + +EPGRFAKLLLRLP+LRSI
Sbjct: 446 FNPDAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSI 498
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYC YQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCCYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 245/303 (80%), Gaps = 3/303 (0%)
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
P P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDKR
Sbjct: 127 PSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKR 186
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV 165
QRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE V
Sbjct: 187 QRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSGHEDMPVERILEAELAV 246
Query: 166 DMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
+ K E D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAGW
Sbjct: 247 EPKTESYGDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGW 306
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK+
Sbjct: 307 NELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKS 366
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+L
Sbjct: 367 ELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPAL 426
Query: 343 RSI 345
RSI
Sbjct: 427 RSI 429
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/331 (62%), Positives = 264/331 (79%), Gaps = 6/331 (1%)
Query: 20 MSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCK 79
M+ N + ++++ S N + + YPPNHPL KHLC+ICGD+ASGKHYGVYSCEGCK
Sbjct: 47 MTPNSPNTYPMANSSNSQNCIVKTNYPPNHPLSNYKHLCAICGDKASGKHYGVYSCEGCK 106
Query: 80 GFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD 139
GFFKRTVRKDL+YACRE ++C++D+RQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+
Sbjct: 107 GFFKRTVRKDLTYACREEKSCLVDRRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKDRE 166
Query: 140 --SNEVESTSGTLI-EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQL 196
S EVESTS + +MP+ERILEAE+R+D K E + E +N C+AT+ QLFQ+
Sbjct: 167 NTSGEVESTSSYVFNDMPIERILEAERRIDCKIE---FPVEFENSVSNFCQATNTQLFQI 223
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
+DWAKHIP+FT+LP+ DQV+LL+A WNELLI +FS+RSI +D I+LA G V ++SAH+
Sbjct: 224 IDWAKHIPYFTSLPVADQVVLLKASWNELLITNFSYRSIDARDAIVLATGYAVNKNSAHQ 283
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
AG+ IFDRVLTE+V KMRE++MDKTE+GCL+ I LFN +++GLKS Q VE LREKV+
Sbjct: 284 AGLEAIFDRVLTEVVYKMREIRMDKTEIGCLKCITLFNSEIKGLKSAQEVESLREKVFCV 343
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+E+TR+N+ E GRFAKLLLRLP +RSI +
Sbjct: 344 PDEHTRINYPNEQGRFAKLLLRLPPVRSIAL 374
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/295 (71%), Positives = 244/295 (82%), Gaps = 3/295 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 143 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLFYTCRDSKDCLIDKRQRNRCQYC 202
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
RYQKCL MGMKREAVQEER R++E+ E ESTS T EM VERILEAE V+ K E
Sbjct: 203 RYQKCLAMGMKREAVQEERHRSREKSDTEAESTSITSEEMAVERILEAELAVEPKIEAFG 262
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAGWNELLIASF
Sbjct: 263 DAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLLLEDQVILLRAGWNELLIASF 322
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK+ELGCLR I
Sbjct: 323 SHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAI 382
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY +LE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 383 VLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSI 437
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/300 (72%), Positives = 245/300 (81%), Gaps = 5/300 (1%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 85 PMLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 144
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 145 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSVVNEEMPVEKILEAEMAVEQKT 203
Query: 170 E-PADQDI---VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E AD TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 204 ELHADGSSGCSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 263
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 264 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELG 323
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 324 CLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSI 383
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/356 (63%), Positives = 262/356 (73%), Gaps = 25/356 (7%)
Query: 11 NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPY-------PP-------NHPLCGS-- 54
+ S G S G SS N + N S + P PP +HP G+
Sbjct: 64 SVGSPGIPGTPSIGYGPVSSPQINSTVNLSGLHPVSSSEDVKPPLGMRSMSSHPNGGAVS 123
Query: 55 -KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+DKRQRNRCQYC
Sbjct: 124 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYC 183
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR KERD E E + EMPVE+ILEAE V+ K +D
Sbjct: 184 RYQKCLATGMKREAVQEERQRGKERD-GEAEFSGAINEEMPVEKILEAELAVEQK---SD 239
Query: 174 QDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
Q + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIAS
Sbjct: 240 QSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIAS 299
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR
Sbjct: 300 FSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRA 359
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 360 IILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSI 415
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 384 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 443
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 444 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 503
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R +EVES+S +MPVE+ILEAE V+ K E + V TNIC
Sbjct: 504 QRGKDRGESEVESSSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTNIC 563
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 564 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 623
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 624 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 683
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 684 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 722
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/381 (59%), Positives = 275/381 (72%), Gaps = 37/381 (9%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEER-QRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQ 174
CL MGMKREA R Q TK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 132 CLTMGMKREAAGHRRGQWTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ 191
Query: 175 DI----------------------------VNEQQ--ATNICKATDKQLFQLVDWAKHIP 204
+ N Q +NIC+A D+ L QLV+WAKHIP
Sbjct: 192 GVRLQVPLAPPDSEKCSFTLPFHPASEVPCANPLQDVVSNICQAADRHLVQLVEWAKHIP 251
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
HFT LP+EDQV+LL+AGWNELLIASFSHRS+ V+DGI+LA G+ ++RSSAH+AGVG IFD
Sbjct: 252 HFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFD 311
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
RVL+ELV+KM+EMK+DKTELGCLR+I+LFNPD +GL VE+LREKVY +LEEYTR
Sbjct: 312 RVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTT 371
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ +EPGRFAKLLLRLP+LRSI
Sbjct: 372 YPDEPGRFAKLLLRLPALRSI 392
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/376 (58%), Positives = 267/376 (71%), Gaps = 44/376 (11%)
Query: 1 MKPDTATLL----VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+ PDT +LL N+ G + S ++ + +N S S+ + YPP+HPL GSKH
Sbjct: 13 VAPDTVSLLSPAPAFSNANGGPASPSISTSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKH 72
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQ
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 117 KCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQ 174
KCL+MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 133 KCLSMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ 192
Query: 175 DI------------------------------------VNEQQ--ATNICKATDKQLFQL 196
+ VN Q +NIC+A D+ L QL
Sbjct: 193 GVRPPNLCQVPLAGPETIDISEKCSFTLPFHPVSEVTNVNPLQDVVSNICQAADRHLVQL 252
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WAKHIPHFT LP+EDQV+LL+AGWNELLIASFSHRS+ V+DGI+LA G+ V+RSSAH+
Sbjct: 253 VEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQ 312
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
AGVG IFDRVL+ELV+K++EMKMDKTELGCLR I+LFNPD +G+ VE+LREKVY +
Sbjct: 313 AGVGAIFDRVLSELVAKVKEMKMDKTELGCLRAIVLFNPDAKGVTCCSDVEILREKVYAA 372
Query: 317 LEEYTRVNHSEEPGRF 332
LEE TR + EPGRF
Sbjct: 373 LEESTRTTYPGEPGRF 388
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/356 (63%), Positives = 262/356 (73%), Gaps = 25/356 (7%)
Query: 11 NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPY-------PP-------NHPLCGS-- 54
+ S G S G SS N + N S + P PP +HP G+
Sbjct: 27 SVGSPGIPGTPSIGYGPVSSPQINSTVNLSGLHPVSSSEDVKPPLGMRSMSSHPNGGAVS 86
Query: 55 -KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+DKRQRNRCQYC
Sbjct: 87 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYC 146
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR KERD E E + EMPVE+ILEAE V+ K +D
Sbjct: 147 RYQKCLATGMKREAVQEERQRGKERD-GEAEFSGAINEEMPVEKILEAELAVEQK---SD 202
Query: 174 QDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
Q + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIAS
Sbjct: 203 QSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIAS 262
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR
Sbjct: 263 FSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRA 322
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 323 IILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSI 378
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 185 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 244
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 245 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 304
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R +EVES+S +MPVE+ILEAE V+ K E + V TNIC
Sbjct: 305 QRGKDRGESEVESSSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTNIC 364
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 365 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 424
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 425 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 484
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 485 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 523
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/321 (67%), Positives = 248/321 (77%), Gaps = 21/321 (6%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
+ P P+ K LC+ICGDR+SGKHYGV+SCEGCKGFFKRTVRKDLSY CR+ ++C++DK
Sbjct: 77 HSPGGPMLSQKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDK 136
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL GMKREAVQEERQR KER+S EVESTS EMPVE+ILEAE
Sbjct: 137 RQRNRCQYCRYQKCLACGMKREAVQEERQRNKERES-EVESTSAVNEEMPVEKILEAEMA 195
Query: 165 VDMKQE------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
V+ K E D + TNIC+A DKQLF LV+WAK +PHF+ L L+DQV+LL
Sbjct: 196 VEQKTELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILL 255
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIFD 264
RAGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AG VG IFD
Sbjct: 256 RAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFD 315
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
RVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y +
Sbjct: 316 RVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYCKQR 375
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ ++ GRFAKLLLRLP+LRSI
Sbjct: 376 YPDQQGRFAKLLLRLPALRSI 396
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/312 (68%), Positives = 245/312 (78%), Gaps = 17/312 (5%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 118 PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 177
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR K+RD EVESTS EMPVE+ILEAE V+ K
Sbjct: 178 CQYCRYQKCLAMGMKREAVQEERQRNKDRD-GEVESTSAVNEEMPVEKILEAEMAVEQKT 236
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 237 ELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 296
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAG------------VGGIFDRVLTELVSK 273
LIASFSHRSISVKDGILLA G+ V+R+SAH AG VG IFDRVLTELVSK
Sbjct: 297 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSK 356
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFA
Sbjct: 357 MRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFA 416
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 417 KLLLRLPALRSI 428
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 177 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 236
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 237 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 296
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R +EVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 297 QRGKDRSESEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLSPSSPNDPVTNIC 356
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 357 QAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 416
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 417 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 476
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 477 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 515
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/341 (65%), Positives = 259/341 (75%), Gaps = 19/341 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 30 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 89
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 90 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 149
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA--------DQDIVNEQQATN 184
QR K+R +EVES+S +MPVE+ILEAE V+ K E + TN
Sbjct: 150 QRGKDRGESEVESSSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSVSPNDPVTN 209
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 210 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 269
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 270 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 329
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 330 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 370
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/306 (69%), Positives = 247/306 (80%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGS---KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
P+HP G+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+D
Sbjct: 77 PSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVD 136
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ 163
KRQRNRCQYCRYQKCL GMKREAVQEERQR KERD E E + EMPVE+ILEAE
Sbjct: 137 KRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERD-GEAELSGAINEEMPVEKILEAEL 195
Query: 164 RVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
V+ K +DQ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLR
Sbjct: 196 AVEQK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLR 252
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+M
Sbjct: 253 AGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM 312
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRL
Sbjct: 313 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRL 372
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 373 PALRSI 378
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/314 (68%), Positives = 244/314 (77%), Gaps = 19/314 (6%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 119 PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 178
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 179 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILEAEMAVEQKT 237
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 238 ELHSDGGSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 297
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--------------RVLTELV 271
LIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFD RVLTELV
Sbjct: 298 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRELAHNAEVGAIFERVLTELV 357
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
SKMR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GR
Sbjct: 358 SKMRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGR 417
Query: 332 FAKLLLRLPSLRSI 345
FAKLLLRLP+LRSI
Sbjct: 418 FAKLLLRLPALRSI 431
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/308 (69%), Positives = 248/308 (80%), Gaps = 6/308 (1%)
Query: 42 ISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI 101
+SP+ P P+ K LCSICGD +SGKHYGVYSCE C+GFFKRTVRKDL+Y CR+ ++C+
Sbjct: 78 LSPHSPG-PMLSQKRLCSICGDYSSGKHYGVYSCEVCEGFFKRTVRKDLTYTCRDSKDCM 136
Query: 102 IDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
+DKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEA
Sbjct: 137 VDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILEA 195
Query: 162 EQRVDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
E V+ K E + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 196 EMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELQLDDQVIL 255
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREM 277
LRAGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M
Sbjct: 256 LRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDM 315
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
+MDK+ELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFAKLLL
Sbjct: 316 QMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLL 375
Query: 338 RLPSLRSI 345
RLP+LRSI
Sbjct: 376 RLPALRSI 383
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/306 (69%), Positives = 247/306 (80%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGS---KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
P+HP G+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+D
Sbjct: 116 PSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVD 175
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ 163
KRQRNRCQYCRYQKCL GMKREAVQEERQR KERD E E + EMPVE+IL+AE
Sbjct: 176 KRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERD-GEAELSGAINEEMPVEKILDAEL 234
Query: 164 RVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
V+ K +DQ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLR
Sbjct: 235 AVEQK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLR 291
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+M
Sbjct: 292 AGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM 351
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRL
Sbjct: 352 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRL 411
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 412 PALRSI 417
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/306 (69%), Positives = 247/306 (80%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGS---KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
P+HP G+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+D
Sbjct: 123 PSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVD 182
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ 163
KRQRNRCQYCRYQKCL GMKREAVQEERQR KERD E E + EMPVE+IL+AE
Sbjct: 183 KRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERD-GEAELSGAINEEMPVEKILDAEL 241
Query: 164 RVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
V+ K +DQ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLR
Sbjct: 242 AVEQK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLR 298
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+M
Sbjct: 299 AGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM 358
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRL
Sbjct: 359 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRL 418
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 419 PALRSI 424
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/306 (69%), Positives = 247/306 (80%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGS---KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
P+HP G+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+D
Sbjct: 123 PSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVD 182
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ 163
KRQRNRCQYCRYQKCL GMKREAVQEERQR KERD E E + EMPVE+IL+AE
Sbjct: 183 KRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERD-GEAELSGAINEEMPVEKILDAEL 241
Query: 164 RVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
V+ K +DQ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLR
Sbjct: 242 AVEQK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLR 298
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+M
Sbjct: 299 AGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM 358
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRL
Sbjct: 359 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRL 418
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 419 PALRSI 424
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/306 (69%), Positives = 247/306 (80%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGS---KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
P+HP G+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+D
Sbjct: 110 PSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVD 169
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ 163
KRQRNRCQYCRYQKCL GMKREAVQEERQR KERD E E + EMPVE+IL+AE
Sbjct: 170 KRQRNRCQYCRYQKCLATGMKREAVQEERQRGKERD-GEAELSGAINEEMPVEKILDAEL 228
Query: 164 RVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
V+ K +DQ + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+LLR
Sbjct: 229 AVEQK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLR 285
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+M
Sbjct: 286 AGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRM 345
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRL
Sbjct: 346 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRL 405
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 406 PALRSI 411
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/319 (66%), Positives = 247/319 (77%), Gaps = 19/319 (5%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
+ P P+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C++DK
Sbjct: 77 HSPGGPMLSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDK 136
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL GMKREAVQEERQR KER+S E ESTS EMPVE+ILEAE
Sbjct: 137 RQRNRCQYCRYQKCLACGMKREAVQEERQRNKERES-EAESTSAVNEEMPVEKILEAEMA 195
Query: 165 VDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
++ K E + + TNIC+A DKQLF LV+WAK +PHF+ L ++DQV+LLRA
Sbjct: 196 IEQKTEVHADGSSEGSTPNDPVTNICQAADKQLFTLVEWAKRVPHFSELAMDDQVILLRA 255
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIFDRV 266
GWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AG VG IFDRV
Sbjct: 256 GWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGVIFDRESAHNAEVGAIFDRV 315
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
LTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y + +
Sbjct: 316 LTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSSSEVELLREKVYASLESYCKHRYP 375
Query: 327 EEPGRFAKLLLRLPSLRSI 345
++ GRFAKLLLRLP+LRSI
Sbjct: 376 DQQGRFAKLLLRLPALRSI 394
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/303 (69%), Positives = 244/303 (80%), Gaps = 8/303 (2%)
Query: 47 PNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQ 106
PN K LC+ICGDR+SGKHYGV+SCEGCKGFFKRT+RKDL+Y CR+ ++CI+DKRQ
Sbjct: 117 PNGGTVSGKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQ 176
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
RNRCQYCRYQKCL GMKREAVQEERQR +ERD E E + EMPVE+ILEAE V+
Sbjct: 177 RNRCQYCRYQKCLATGMKREAVQEERQRGRERD-GEAELSGAINEEMPVEKILEAELAVE 235
Query: 167 MKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
K +DQ + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGW
Sbjct: 236 QK---SDQSLEGGGSPSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGW 292
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKT
Sbjct: 293 NELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKT 352
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + ++ GRFAKLLLRLP+L
Sbjct: 353 ELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPAL 412
Query: 343 RSI 345
RSI
Sbjct: 413 RSI 415
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/296 (70%), Positives = 244/296 (82%), Gaps = 9/296 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C++CGDRASGKHYGVYSCEGC+GFFKRTVRKDLSY CR+ ++C+IDKRQRNRCQYC
Sbjct: 188 AKHICAVCGDRASGKHYGVYSCEGCEGFFKRTVRKDLSYTCRDSKDCVIDKRQRNRCQYC 247
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL MGMKREAVQEERQ+ KE++ E + + +MPV++ILEAE D K E
Sbjct: 248 RYQKCLAMGMKREAVQEERQKNKEKEDGEPANPND---DMPVDKILEAELISDPKVEQVV 304
Query: 171 PADQDIVNEQQ-ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
P++Q VNE +NICKA D+QL LV+WAK IPHF++LPLEDQV+LLRAGWNELLIAS
Sbjct: 305 PSEQ--VNENDPVSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIAS 362
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRSI VKD ILLA G+ V+R SAH+AGVG IFDRVLTELVSKMR+M MDKTELGCLR
Sbjct: 363 FSHRSIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRA 422
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LFNPDV+ L +E LREKVY SLE Y R + ++PGRFAKLLLRLP+LRSI
Sbjct: 423 IVLFNPDVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSI 478
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/320 (66%), Positives = 250/320 (78%), Gaps = 18/320 (5%)
Query: 42 ISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI 101
+SP+ P P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+
Sbjct: 112 LSPHSPG-PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCL 170
Query: 102 IDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
+DKRQRNRCQYCRYQKCL MGMKREAVQ+ERQR KER+ EVESTS EMPVE+ILEA
Sbjct: 171 VDKRQRNRCQYCRYQKCLAMGMKREAVQDERQRNKERE-GEVESTSAVNEEMPVEKILEA 229
Query: 162 ----EQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
EQ+ ++ + + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 230 EVAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVIL 289
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG------------VGGIFDR 265
LRAGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AG VG IFDR
Sbjct: 290 LRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDR 349
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCL IILFNPD +GL + VE+LRE+VY SLE Y + +
Sbjct: 350 VLTELVSKMRDMQMDKTELGCLPAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKY 409
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
++ GRFAKLLLRLP+LRSI
Sbjct: 410 PDQQGRFAKLLLRLPALRSI 429
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/298 (69%), Positives = 243/298 (81%), Gaps = 8/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 62 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYC 121
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR KER E + +MPVE+ILEAE V+ K E
Sbjct: 122 RYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANE--DMPVEKILEAELAVEPKTETYV 179
Query: 174 QDIVNEQQ------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ ++ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 180 EANLSPSANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLI 239
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 240 ASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 299
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LRE+VY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 300 RAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 357
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/298 (69%), Positives = 243/298 (81%), Gaps = 8/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 50 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYC 109
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR KER E + +MPVE+ILEAE V+ K E
Sbjct: 110 RYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANE--DMPVEKILEAELAVEPKTETYV 167
Query: 174 QDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ ++ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 168 EANLSPSANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLI 227
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 228 ASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 287
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LRE+VY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 288 RAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 345
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/361 (60%), Positives = 266/361 (73%), Gaps = 22/361 (6%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSI--ISPYPPNHPLCGSKHLCSI 60
P +T L GG S++ ++ + N SS ++ S +P HPL GSKHLCSI
Sbjct: 25 PQPSTYLSGGGYGGTLSVNRAPADGQPTLSNGPSSATAPGGDSRFPATHPLSGSKHLCSI 84
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C++DKRQRNRCQYCRYQKCL
Sbjct: 85 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERRCVVDKRQRNRCQYCRYQKCLM 144
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLI-----------EMPVERILEAEQRVDMKQ 169
GMKREAVQEERQR K+R+ NEVESTSG + +MP+ERILEAE RV +
Sbjct: 145 CGMKREAVQEERQRAKDRNDNEVESTSGGVGVSGGVGGPGSPDMPLERILEAEMRV---E 201
Query: 170 EPADQDIVNEQQA-----TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+PA + + ++C+A L +LV WA+ IPHF LP+ED+ LL+AGWNE
Sbjct: 202 QPAPSVLAQTAASGRDPVNSMCQAA-PPLHELVQWARRIPHFEELPIEDRTALLKAGWNE 260
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIA+FSHRS++V+DGI+LA G+ V R SAH AGVG IFDRVL ELV+KMR+MKMDKTEL
Sbjct: 261 LLIAAFSHRSVAVRDGIVLATGLVVQRHSAHGAGVGDIFDRVLAELVAKMRDMKMDKTEL 320
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR ++LFNPD +GL++ VE LREKVY +LEE+ R +H ++PGRF KLLLRLP+LRS
Sbjct: 321 GCLRAVVLFNPDAKGLRNATRVEALREKVYAALEEHCRRHHPDQPGRFGKLLLRLPALRS 380
Query: 345 I 345
I
Sbjct: 381 I 381
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/312 (69%), Positives = 245/312 (78%), Gaps = 17/312 (5%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 119 PMLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 178
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 179 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSVVNEEMPVEKILEAEMAVEQKT 237
Query: 170 E-PADQD---IVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E AD TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 238 ELHADGSSGCSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 297
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAG------------VGGIFDRVLTELVSK 273
LIASFSHRSISVKDGILLA G+ V+R+SAH AG VG IFDRVLTELVSK
Sbjct: 298 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSK 357
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFA
Sbjct: 358 MRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFA 417
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 418 KLLLRLPALRSI 429
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++E +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSREXAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D+++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDRNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>gi|171362735|dbj|BAG14374.1| retinoid X receptor gamma homolog [Lepisosteus platyrhinchus]
Length = 285
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/285 (72%), Positives = 238/285 (83%), Gaps = 3/285 (1%)
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGM
Sbjct: 1 RSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGM 60
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDIVNEQQ- 181
KREAVQEERQR +E+ NEVESTS +MPVE+ILEAE V+ K E D + N
Sbjct: 61 KREAVQEERQRGREKSDNEVESTSNYNEDMPVEKILEAELAVEPKTETYMDASLGNSSND 120
Query: 182 -ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG 240
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDG
Sbjct: 121 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDG 180
Query: 241 ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGL 300
ILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD +GL
Sbjct: 181 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGL 240
Query: 301 KSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ VE LREKVY SLE YT+ + E+PGRFAKLLLRLP+LRSI
Sbjct: 241 SNPSEVEGLREKVYASLEAYTKQKYPEQPGRFAKLLLRLPALRSI 285
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/289 (70%), Positives = 234/289 (80%), Gaps = 5/289 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 130 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 189
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER NE ESTSG +MPVERILEAE
Sbjct: 190 RQRNRCQYCRYQKCLAMGMKREAVQEERQRSRERSENEAESTSGGSEDMPVERILEAELA 249
Query: 165 VDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 250 VEPKTE-AYSDVNTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 308
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 309 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 368
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E P
Sbjct: 369 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEHP 417
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/296 (70%), Positives = 243/296 (82%), Gaps = 9/296 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C++CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C+IDKRQRNRCQYC
Sbjct: 12 AKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKDCVIDKRQRNRCQYC 71
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL MGMKREAVQEERQ+ KE++ E + + +MPV++ILEAE D K E
Sbjct: 72 RYQKCLAMGMKREAVQEERQKNKEKEDGEPANPND---DMPVDKILEAELISDPKVEQVV 128
Query: 171 PADQDIVNEQQ-ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
P +Q VNE +NICKA D+QL LV+WAK IPHF++LPLEDQV+LLRAGWNELLIAS
Sbjct: 129 PFEQ--VNENDPVSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIAS 186
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FSHRSI VKD ILLA G+ V+R SAH+AGVG IFDRVLTELVSKMR+M MDKTELGCLR
Sbjct: 187 FSHRSIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRA 246
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LFNPDV+ L +E LREKVY SLE Y R + ++PGRFAKLLLRLP+LRSI
Sbjct: 247 IVLFNPDVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSI 302
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/297 (70%), Positives = 243/297 (81%), Gaps = 2/297 (0%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
PL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE R CIIDKRQRNR
Sbjct: 72 PLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERTCIIDKRQRNR 131
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG-TLIEMPVERILEAEQRVDMK 168
CQYCRYQKCL GMKREAVQEERQRTK+R +EVESTSG EMP+ERILEAE RV+ +
Sbjct: 132 CQYCRYQKCLACGMKREAVQEERQRTKDRADSEVESTSGGAPPEMPLERILEAELRVESQ 191
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ + ++IC+A D+QL QLV WAKHIPHF LPLED+++LL+AGWNELLIA
Sbjct: 192 TGTLSESAQQQDPVSSICQAADRQLHQLVQWAKHIPHFEELPLEDRMVLLKAGWNELLIA 251
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+FSHRS+ V+DGI+LA G+ V R SAH AGVG IFDRVLTELV+KMREMKMD+TELGCL
Sbjct: 252 AFSHRSVDVRDGIVLATGLVVQRHSAHGAGVGAIFDRVLTELVAKMREMKMDRTELGCLL 311
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++LFNP+ +GL++ E V ++LEE+ R + ++PGRFAKLLLRLP+LRSI
Sbjct: 312 AVVLFNPEAKGLRTCPSGGPEGESV-SALEEHCRQQYPDQPGRFAKLLLRLPALRSI 367
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/288 (71%), Positives = 239/288 (82%), Gaps = 6/288 (2%)
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++CIIDKRQRNRCQYCRYQKCL MGM
Sbjct: 1 RSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGM 60
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----- 178
KREAVQEERQR+K+R+ NEVESTS +MPVE+IL+AE V+ K + + +
Sbjct: 61 KREAVQEERQRSKDRNENEVESTSSANEDMPVEKILDAELAVEPKTDTYIETNLGMPSNS 120
Query: 179 -EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+V
Sbjct: 121 PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 180
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 181 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDS 240
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 241 KGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 288
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/299 (68%), Positives = 240/299 (80%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 174 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 233
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + E T G EMPV+RILEAE V+ K +
Sbjct: 234 YQKCLATGMKREAVQEERQRGKDKDGDG-EGTGGAPEEMPVDRILEAELAVEQKSDQGVE 292
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 293 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 352
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 353 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 412
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 413 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 471
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/303 (68%), Positives = 243/303 (80%), Gaps = 15/303 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR K++D++ E G EMPV+RILEAE V+ K +D
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDADG-EGAGGAPEEMPVDRILEAELAVEQK---SD 315
Query: 174 QDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
Q + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGW
Sbjct: 316 QGVESPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGW 375
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKT
Sbjct: 376 NELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKT 435
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 436 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 495
Query: 343 RSI 345
RSI
Sbjct: 496 RSI 498
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 245/322 (76%), Gaps = 27/322 (8%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C++DKRQRNR
Sbjct: 133 PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNR 192
Query: 110 CQYCRYQKCLNMGMKRE--------AVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
CQYCRYQKCL MGMKRE +VQEERQR KERD EVES+S EMPVE+ILEA
Sbjct: 193 CQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERD-GEVESSSAANEEMPVEKILEA 251
Query: 162 EQRVDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
E V+ K E + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 252 EMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVIL 311
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIF 263
LRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AG VG IF
Sbjct: 312 LRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIF 371
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y +
Sbjct: 372 DRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQ 431
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ ++ GRFAKLLLRLP+LRSI
Sbjct: 432 RYPDQQGRFAKLLLRLPALRSI 453
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/293 (70%), Positives = 243/293 (82%), Gaps = 20/293 (6%)
Query: 68 KHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127
+HYGVYSCEGCKGFFKRTVRKDLSYACRE RNC+IDKRQRNRCQYCRYQKCL+MGMKREA
Sbjct: 1 EHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYCRYQKCLSMGMKREA 60
Query: 128 VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ------ 181
VQEERQR KE++ NEVESTS +MP+ERIL+AE RV EP D+ IV++ +
Sbjct: 61 VQEERQRNKEKNDNEVESTSSIHNDMPLERILDAELRV----EPKDEQIVDKHKHTPCFV 116
Query: 182 ---------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
TN C+A ++QL QLV+WAKHIPHFT LP+EDQV LLRAGWNELLIA+FSH
Sbjct: 117 MPFSAVQNTMTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSH 176
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS++VKD I+LA G+ ++R+ AH AGVG IFDRVLTELV+KMREMKMD+TELGCLR IIL
Sbjct: 177 RSVNVKDSIVLATGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIIL 236
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
FNP V+GL+S QV+E LRE+VY +LEEY + ++ +EPGRFAKLLLRLP+LRSI
Sbjct: 237 FNP-VKGLRSSQVIESLRERVYATLEEYCKQHYPDEPGRFAKLLLRLPALRSI 288
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 245/322 (76%), Gaps = 27/322 (8%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C++DKRQRNR
Sbjct: 117 PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNR 176
Query: 110 CQYCRYQKCLNMGMKRE--------AVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
CQYCRYQKCL MGMKRE +VQEERQR KERD EVES+S EMPVE+ILEA
Sbjct: 177 CQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERD-GEVESSSAANEEMPVEKILEA 235
Query: 162 EQRVDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
E V+ K E + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 236 EMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVIL 295
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIF 263
LRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AG VG IF
Sbjct: 296 LRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIF 355
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y +
Sbjct: 356 DRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQ 415
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ ++ GRFAKLLLRLP+LRSI
Sbjct: 416 RYPDQQGRFAKLLLRLPALRSI 437
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/312 (68%), Positives = 242/312 (77%), Gaps = 19/312 (6%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 85 PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 144
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 145 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILEAEMAVEQKT 203
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLR WNEL
Sbjct: 204 ELHSDGGSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR--WNEL 261
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------------RVLTELVSK 273
LIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFD RVLTELVSK
Sbjct: 262 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSK 321
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFA
Sbjct: 322 MRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFA 381
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 382 KLLLRLPALRSI 393
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 245/322 (76%), Gaps = 27/322 (8%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C++DKRQRNR
Sbjct: 84 PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNR 143
Query: 110 CQYCRYQKCLNMGMKRE--------AVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
CQYCRYQKCL MGMKRE +VQEERQR KERD EVES+S EMPVE+ILEA
Sbjct: 144 CQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERD-GEVESSSAANEEMPVEKILEA 202
Query: 162 EQRVDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
E V+ K E + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 203 EMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVIL 262
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIF 263
LRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AG VG IF
Sbjct: 263 LRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIF 322
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y +
Sbjct: 323 DRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQ 382
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ ++ GRFAKLLLRLP+LRSI
Sbjct: 383 RYPDQQGRFAKLLLRLPALRSI 404
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/310 (64%), Positives = 245/310 (79%), Gaps = 14/310 (4%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
+P+ + +KH+C++CGDRASGKHYGVYSCEGCKGFFKRTVRK+L+Y CR+ ++C+I
Sbjct: 87 NPFSSVSTMSLAKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKELTYTCRDSKDCVI 146
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQ+ +E+D ++ + + +MPV++ILEAE
Sbjct: 147 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQKNREKDEIDLNNPN---YDMPVDKILEAE 203
Query: 163 QRVDMKQEPADQDIVNEQQA-------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+ EP + +V+ QA +NI KA D+QLF LV+WAK IPHF L L+DQ+
Sbjct: 204 ----LASEPKMEQVVDFAQAQEQSDPVSNIFKAADRQLFTLVEWAKRIPHFPKLVLDDQI 259
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
+LLRAGWNELLIASFSHRSI VKD ILLA G+ V+R SAH+AGVG IFDRVLTELVSKMR
Sbjct: 260 ILLRAGWNELLIASFSHRSIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVLTELVSKMR 319
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+M MDKTELGCLR I+LFNPDV+ L +E LREKVY SLE Y R + ++PGRFAKL
Sbjct: 320 DMMMDKTELGCLRAIVLFNPDVKNLSDPAHIESLREKVYASLEAYCRSKYPDQPGRFAKL 379
Query: 336 LLRLPSLRSI 345
LLRLP+LRSI
Sbjct: 380 LLRLPALRSI 389
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/350 (61%), Positives = 254/350 (72%), Gaps = 6/350 (1%)
Query: 1 MKPDTATLL-VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCS 59
MKPDT+ L VN + + S +S ++ G S + YPP+HPL G+KH+CS
Sbjct: 23 MKPDTSLLTTVNNSPMMSQSPTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCS 82
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRASGKHYGVYSCEGCKGFFKRTVRK+LSYACRE + C+IDKRQRNRCQ+CRY KC+
Sbjct: 83 ICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCM 142
Query: 120 NMGMKREAVQEERQRTKERDSN----EVESTSGTLIEMPVERILEAEQRVDMKQEPADQD 175
MGMKREAVQEERQR D N EVE + +MP +RILEAE+ D + +
Sbjct: 143 AMGMKREAVQEERQRGSRGDKNGGDDEVEGSVLGPGDMPTDRILEAERICDKHEREQLTN 202
Query: 176 IVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
++ QA A +KQL LV+WAK IPHFT+L L+DQV LLR GWNEL+IA FSHRSI
Sbjct: 203 EGDDIQA-KFKFAAEKQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELMIAGFSHRSI 261
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
+++GI LA GV V R +AH +GVG IFDRVL ELVSKM EM MDKTELG LR I+L+NP
Sbjct: 262 GIQNGIQLASGVVVTRENAHTSGVGAIFDRVLVELVSKMTEMCMDKTELGSLRAIVLYNP 321
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
DV+GLK VE LRE+VY SLEEYTR H E GRFAKLLLRLP+LRSI
Sbjct: 322 DVKGLKDIARVEQLRERVYASLEEYTRSTHENETGRFAKLLLRLPALRSI 371
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/312 (67%), Positives = 241/312 (77%), Gaps = 19/312 (6%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LCSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 85 PMLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 144
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 145 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILEAEMAVEQKT 203
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E TNI +A DKQLF LV+WAK IPHF+ LPL+DQV+LLR WNEL
Sbjct: 204 ELHSDGGSGGSSPNDPVTNISQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR--WNEL 261
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------------RVLTELVSK 273
LIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFD RVLTELVSK
Sbjct: 262 LIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSK 321
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFA
Sbjct: 322 MRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFA 381
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 382 KLLLRLPALRSI 393
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/293 (68%), Positives = 234/293 (79%), Gaps = 3/293 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGR K
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRPMK 418
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/284 (73%), Positives = 236/284 (83%), Gaps = 7/284 (2%)
Query: 65 ASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124
A GKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ RNC++DKRQRNRCQYCRYQKCL MGM+
Sbjct: 8 ALGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDRNCMVDKRQRNRCQYCRYQKCLGMGMR 67
Query: 125 REAVQEERQRT-KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ-- 181
REAVQEERQR K ++VESTSGT +MPVE+IL+AE V EP + V+ +
Sbjct: 68 REAVQEERQRKDKPTGDSQVESTSGTSNDMPVEKILDAELAV----EPNNGPYVDTPRDP 123
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHFT LPL+DQV LLRAGWNELLIA+FSHRSI VKDGI
Sbjct: 124 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGI 183
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+R+SAH AGVG IFDRVLTELV+KMREMKMDKTELGCLR I+LFNPD + L
Sbjct: 184 LLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLT 243
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
S Q VE LREKVY SLEEY R +++EPGRFAKLLLRLP+LRSI
Sbjct: 244 SVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSI 287
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/299 (68%), Positives = 239/299 (79%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 193 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 252
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL GMKREAVQEERQR KE+D + EMPV+RILEAE V+ K + +
Sbjct: 253 YQKCLATGMKREAVQEERQRGKEKDGEGEGAGG-APEEMPVDRILEAELAVEQKSDQGVE 311
Query: 175 DIVN--------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 312 GPGGAGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 371
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSISV+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 372 IASFSHRSISVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 431
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 432 LRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSI 490
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/329 (62%), Positives = 250/329 (75%), Gaps = 13/329 (3%)
Query: 19 SMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGC 78
++S F N+ + S S + II PPNHPL SKHLCSICGD+ASGKHYGV+SCEGC
Sbjct: 225 AISRFWPNSTTES----SDSHWII---PPNHPLSNSKHLCSICGDKASGKHYGVFSCEGC 277
Query: 79 KGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER 138
KGFFKRTVRKDL+YACRE R C+IDKRQRNRCQYCRYQKCL GMKREAVQEERQR
Sbjct: 278 KGFFKRTVRKDLTYACREERRCLIDKRQRNRCQYCRYQKCLQCGMKREAVQEERQRKDRS 337
Query: 139 DSNEVEST--SGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQL 196
+SN + L MP+E+I EAE RVD ++ ++ T++ A D+Q+ QL
Sbjct: 338 ESNNNNEVMQAAALDLMPIEKITEAEIRVDQQR----NEVELHDPVTSMNVAADRQIHQL 393
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V WA+ IPHF TLP+EDQV L++ GWNELLIA FSHRSI+VKDGI+LA G+ V R SAH+
Sbjct: 394 VAWARMIPHFLTLPVEDQVALIKQGWNELLIAGFSHRSINVKDGIVLATGLVVQRDSAHQ 453
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
AGVG IFDRVL ELV+KMR++KMDKTELGCLR I+L+NP+ RGL+S VE RE VY +
Sbjct: 454 AGVGAIFDRVLAELVTKMRDIKMDKTELGCLRAIVLYNPEARGLRSVAEVEQFREGVYIA 513
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LEEYTR+++ ++ RF KLLLRLP+LRSI
Sbjct: 514 LEEYTRMSYPDQNSRFPKLLLRLPALRSI 542
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/300 (68%), Positives = 239/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 265 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 324
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR KE+D + EMPV+RILEAE V+ K +
Sbjct: 325 RYQKCLATGMKREAVQEERQRGKEKDGEGEGAGG-APEEMPVDRILEAELAVEQKSDQGV 383
Query: 174 QDIVN--------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
+ TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 384 EGPGGAGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 443
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSISV+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 444 LIASFSHRSISVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 503
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 504 CLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSI 563
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/307 (67%), Positives = 242/307 (78%), Gaps = 20/307 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 184 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 243
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL GMKREAVQEERQR K++D + E G EMPV+RILEAE V+ K +DQ
Sbjct: 244 YQKCLATGMKREAVQEERQRGKDKDGDG-EGPGGAPEEMPVDRILEAELAVEQK---SDQ 299
Query: 175 DI------------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
+ TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGW
Sbjct: 300 GVESPGGTGGSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGW 359
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMK 278
NELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+
Sbjct: 360 NELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMR 419
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLR
Sbjct: 420 MDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLR 479
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 480 LPALRSI 486
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/299 (67%), Positives = 238/299 (79%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 243 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 302
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 303 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 361
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 362 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 421
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 422 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 481
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 482 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 540
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/290 (68%), Positives = 231/290 (79%), Gaps = 3/290 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDI--VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGR
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGR 415
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/306 (67%), Positives = 241/306 (78%), Gaps = 11/306 (3%)
Query: 47 PNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQ 106
PN K LC+ICGDR+SGKHYGV+SCEGCKGFFKRT+RKDL+Y CR+ ++CI+DKRQ
Sbjct: 117 PNGGTVSGKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQ 176
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
RNRCQYCRYQKCL GMKREAVQEERQR +ERD E E + EMPVE+ILEAE V+
Sbjct: 177 RNRCQYCRYQKCLATGMKREAVQEERQRGRERD-GEAELSGAINEEMPVEKILEAELAVE 235
Query: 167 MKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAKHIPHFTTLP---LEDQVLLLR 219
K +DQ + TNIC+ DKQLF LV+WAK IPHF+ LP L+DQV+LLR
Sbjct: 236 QK---SDQSLEGGGSPSDPVTNICQDADKQLFTLVEWAKRIPHFSELPELPLDDQVILLR 292
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
AGWNELLIASFSHRSIS KDGILLA G+ V+R+SAH AGVG IF+RVLTELVSKMR+M+M
Sbjct: 293 AGWNELLIASFSHRSISEKDGILLATGLHVHRNSAHSAGVGAIFERVLTELVSKMRDMRM 352
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY LE Y + + ++ GRFAKLLLRL
Sbjct: 353 DKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYACLESYCKQKYPDQQGRFAKLLLRL 412
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 413 PALRSI 418
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/350 (63%), Positives = 256/350 (73%), Gaps = 28/350 (8%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 102 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 161
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKRE------ 126
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKRE
Sbjct: 162 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREVTPYPA 221
Query: 127 -AVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------E 179
AVQEERQR K+R +EVES+S +MPVE+ILEAE V+ K E + V
Sbjct: 222 SAVQEERQRGKDRGESEVESSSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPN 281
Query: 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR----AGWNELLIASFSHRSI 235
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQ + AGWNELLIASFSHRSI
Sbjct: 282 DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQTTVTLCPALAGWNELLIASFSHRSI 341
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNP
Sbjct: 342 AVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP 401
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
D +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 402 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 451
>gi|28628010|gb|AAO18153.1| USP-RXR [Leptopilina heterotoma]
Length = 283
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/260 (77%), Positives = 224/260 (86%), Gaps = 5/260 (1%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKDLSY CRE + CIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQR
Sbjct: 1 CEGCKGFFKRTVRKDLSYTCREEKTCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 60
Query: 135 TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLF 194
TKERD NEVESTS +MPVERIL+AE RV+ K E + +NIC AT+KQL+
Sbjct: 61 TKERDQNEVESTSSLHADMPVERILDAENRVECKIENQ-----GNYEVSNICNATNKQLY 115
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
QLV+WAKHIPHFT+LP+EDQV LLRAGWNELLIA+FSHRSI VKDGI+LA G+TVYR+SA
Sbjct: 116 QLVEWAKHIPHFTSLPIEDQVRLLRAGWNELLIAAFSHRSIDVKDGIVLAAGITVYRNSA 175
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AGVG IF+RVL+ELVSKMREMKMDKTELGCLRTIILFNP+VRGLKS Q VE+LREKVY
Sbjct: 176 QQAGVGLIFERVLSELVSKMREMKMDKTELGCLRTIILFNPEVRGLKSAQEVELLREKVY 235
Query: 315 TSLEEYTRVNHSEEPGRFAK 334
+LEEYTR +EPGRFAK
Sbjct: 236 AALEEYTRTTKPDEPGRFAK 255
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/332 (61%), Positives = 249/332 (75%), Gaps = 14/332 (4%)
Query: 16 GANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSC 75
G SM SS+ N G++ S+ S P SKH+C++CGDRASGKHYGVYSC
Sbjct: 132 GQGSMVPLQYPQLSSTENMGTNMFSVSSSGVPL-----SKHICAVCGDRASGKHYGVYSC 186
Query: 76 EGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135
EGCKGFFKRTVRK L+Y CR+ ++CIIDKRQRNRCQYCRYQKC+ MGMK+EAVQEERQ+
Sbjct: 187 EGCKGFFKRTVRKYLTYTCRDDKDCIIDKRQRNRCQYCRYQKCITMGMKKEAVQEERQKN 246
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQA--TNICKATDKQL 193
+E+D + G +MPV++IL+AE D K E +++N Q+ T++CKA D QL
Sbjct: 247 REQDECHGD---GGHDDMPVDKILQAELASDPKME----ELINMQEPIDTSVCKAADHQL 299
Query: 194 FQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSS 253
F LV+WAK +P F TLPL+DQV LLRAGWNELLIASFSHRSI + DGI+LA G+ VYR S
Sbjct: 300 FTLVEWAKRVPMFGTLPLDDQVTLLRAGWNELLIASFSHRSIEIPDGIILASGLRVYRQS 359
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
AH AGVG IFDRVLTEL++KMR+M MD+TELGCLR I+LFNPD + L +E LREKV
Sbjct: 360 AHSAGVGAIFDRVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKDLTDPAYIETLREKV 419
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 420 YASLEVYCKSKYPDQAGRFAKLLLRLPALRSI 451
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/303 (67%), Positives = 241/303 (79%), Gaps = 15/303 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +D
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQK---SD 315
Query: 174 QDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
Q + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGW
Sbjct: 316 QGVEGPGGTGGGTSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGW 375
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKT
Sbjct: 376 NELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKT 435
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 436 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 495
Query: 343 RSI 345
RSI
Sbjct: 496 RSI 498
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 75 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 134
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 135 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQK---S 190
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 191 DQGVESPGGTGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 250
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 251 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 310
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 311 TELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 370
Query: 342 LRSI 345
LRSI
Sbjct: 371 LRSI 374
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/299 (67%), Positives = 238/299 (79%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 200 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 259
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 318
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 319 GPGGTGGSGTSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 378
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 379 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 438
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 497
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/299 (67%), Positives = 238/299 (79%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 147 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 206
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 207 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 265
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 266 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 325
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 326 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 385
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 386 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 444
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 149 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 208
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 209 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 267
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 268 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 327
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 328 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 387
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 388 GCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 447
Query: 345 I 345
I
Sbjct: 448 I 448
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/350 (60%), Positives = 254/350 (72%), Gaps = 21/350 (6%)
Query: 16 GANSMSSFGSNNHSSSHNNGSSNSSIISPY-----PPNHPLCGSKHLCSICGDRASGKHY 70
G S S S+ S+ + SS+ + P+ + P+ K +C+ICGDR+SGKHY
Sbjct: 43 GPISNSQINSSMSVSALHAVSSSDDVKPPFGLKSVSGSGPMLSQKRMCAICGDRSSGKHY 102
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 103 GVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQE 162
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-PADQDIVNEQQATNICKAT 189
ERQ+ KERD + E +S EMPVE+ILEAE V+ + + +D TNIC+A
Sbjct: 163 ERQKNKERD-GDYECSSSANEEMPVEKILEAETAVEHRTDLHSDATGSPNDPVTNICQAA 221
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTV 249
DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLIA+FSHRSISVKD ILLA G+ V
Sbjct: 222 DKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHV 281
Query: 250 Y--------------RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
R S+H A VG +FDRVLTELV KMR+M+MDKTELGCLR I+LFNP
Sbjct: 282 PKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFNP 341
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
D +GL S VE+LREKVY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSI 391
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/299 (67%), Positives = 238/299 (79%), Gaps = 9/299 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 201 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 260
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 319
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 320 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 379
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGC
Sbjct: 380 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGC 439
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 LRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/300 (68%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPVERILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVERILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 193 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 252
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 253 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 311
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 312 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 371
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 372 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 431
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 432 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 491
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 203 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 262
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 263 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 321
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 322 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 381
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 382 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 441
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 442 GCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 501
Query: 345 I 345
I
Sbjct: 502 I 502
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/339 (62%), Positives = 250/339 (73%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 144 GSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 203
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+I R+ RC+ RYQ+ L R AVQEER
Sbjct: 204 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLICAREAQRCECLRYQRGLTTAPTRTAVQEER 263
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDI-----VNEQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E D ++ TNIC
Sbjct: 264 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVDANMGLNPNSPNDPVTNIC 323
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 324 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 383
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 384 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 443
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 444 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 482
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 202 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 261
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 262 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 320
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 321 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 380
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 381 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 440
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 441 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 500
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 205 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 264
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 265 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 323
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 324 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 383
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 384 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 443
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 444 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 503
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 144 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 203
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 204 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 262
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 263 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 322
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 323 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 382
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 383 GCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 442
Query: 345 I 345
I
Sbjct: 443 I 443
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 199 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 258
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 259 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 317
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 318 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 377
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 378 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 437
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 438 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 497
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/357 (61%), Positives = 256/357 (71%), Gaps = 31/357 (8%)
Query: 18 NSMSSFGSNNHSSSHNNGSSNSS--------------IISPYPPNHPLCGSKHLCSICGD 63
+ +S G +SS N GS +SS + SP P +PLC KH+C+ICGD
Sbjct: 89 HGVSYMGGPQMNSSLNMGSVSSSEDVKPPLGLHGNIRLGSPLPFPNPLCLPKHICAICGD 148
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + CI+DKRQRNRCQYCRYQKCLN GM
Sbjct: 149 RSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQKCLNTGM 208
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIE-MPVERILEAEQRVDMK-------------- 168
KREAVQEERQR +E + +S SG +E MPVE+ILEAE V+ K
Sbjct: 209 KREAVQEERQRGRE--REDCDSESGVPLEDMPVEKILEAELAVEPKTEGGCEPGGGGGGR 266
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
A TNIC+A DKQLF LV+W+K +PHF+ LPL+DQV+LLRAGWNEL IA
Sbjct: 267 CRTASPGTSPNDPVTNICQAADKQLFTLVEWSKRVPHFSELPLDDQVILLRAGWNELHIA 326
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
SFSHRSI V DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKMR+M MDK ELGCLR
Sbjct: 327 SFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLR 386
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LFNPD +GL S VE REKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 387 AIVLFNPDAKGLSSPSGVEAFREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSI 443
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/311 (64%), Positives = 239/311 (76%), Gaps = 16/311 (5%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K +C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNR
Sbjct: 82 PMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNR 141
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQ+ KERD + E +S EMPVE+ILEAE V+ +
Sbjct: 142 CQYCRYQKCLAMGMKREAVQEERQKNKERD-GDYECSSSANEEMPVEKILEAETAVEHRT 200
Query: 170 E-PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ +D TNIC+A DKQLF LV+WAK +PHF+ +PL+DQV+LLRAGWNELLIA
Sbjct: 201 DLHSDATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIA 260
Query: 229 SFSHRSISVKDGILLAPGVTVY--------------RSSAHEAGVGGIFDRVLTELVSKM 274
+FSHRSISVKD ILLA G+ V R S+H A VG +FDRVLTELV KM
Sbjct: 261 AFSHRSISVKDEILLATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKM 320
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
R+M+MDKTELGCLR I+LFNPD +GL S VE+LREKVY SLE Y + + ++ GRFAK
Sbjct: 321 RDMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAK 380
Query: 335 LLLRLPSLRSI 345
LLLRLP+LRSI
Sbjct: 381 LLLRLPALRSI 391
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 113 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 172
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 173 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 228
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 229 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 288
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 289 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 348
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 349 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 408
Query: 342 LRSI 345
LRSI
Sbjct: 409 LRSI 412
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/358 (61%), Positives = 257/358 (71%), Gaps = 32/358 (8%)
Query: 18 NSMSSFGSNNHSSSHNNGSSNSS--------------IISPYPPNHPLCGSKHLCSICGD 63
+ +S G +SS N GS +SS + SP P +PLC KH+C+ICGD
Sbjct: 75 HGVSYMGGPQMNSSLNMGSVSSSEDVKPPLGLHGNIRLGSPLPFPNPLCLPKHICAICGD 134
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + CI+DKRQRNRCQYCRYQKCLN GM
Sbjct: 135 RSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQKCLNTGM 194
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIE-MPVERILEAEQRVDMK-------------- 168
KREAVQEERQR +E + +S SG +E MPVE+ILEAE V+ K
Sbjct: 195 KREAVQEERQRGRE--REDCDSESGVPLEDMPVEKILEAELAVEPKTEGGCEPGGGGGGG 252
Query: 169 -QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A T+IC+A DKQLF LV+W+K +PHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 253 RSRTASPGTSPNDPVTSICQAADKQLFTLVEWSKRVPHFSELPLDDQVILLRAGWNELLI 312
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI V DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKMR+M MDK ELGCL
Sbjct: 313 ASFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCL 372
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R +LFNPD +GL S VE LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 373 RATVLFNPDAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSI 430
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 118 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 178 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 233
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 234 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 293
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 294 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 353
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 354 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 413
Query: 342 LRSI 345
LRSI
Sbjct: 414 LRSI 417
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 125 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 184
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 185 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 240
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 241 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 300
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 301 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 360
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 361 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 420
Query: 342 LRSI 345
LRSI
Sbjct: 421 LRSI 424
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 77 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 136
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 137 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 192
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 193 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 252
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 253 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 312
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 313 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 372
Query: 342 LRSI 345
LRSI
Sbjct: 373 LRSI 376
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 118 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 178 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 233
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 234 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 293
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 294 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 353
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 354 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 413
Query: 342 LRSI 345
LRSI
Sbjct: 414 LRSI 417
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/358 (61%), Positives = 256/358 (71%), Gaps = 32/358 (8%)
Query: 18 NSMSSFGSNNHSSSHNNGSSNSS--------------IISPYPPNHPLCGSKHLCSICGD 63
+ +S G +SS N GS +SS + SP P +PLC KH+C+ICGD
Sbjct: 89 HGVSYMGGPQMNSSLNMGSVSSSEDVKPPLGLHGNIRLGSPLPFPNPLCLPKHICAICGD 148
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + CI+DKRQRNRCQYCRYQKCLN GM
Sbjct: 149 RSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQKCLNTGM 208
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIE-MPVERILEAEQRVDMK-------------- 168
KREAVQEERQR +E + +S SG +E MPVE+ILEAE V+ K
Sbjct: 209 KREAVQEERQRGRE--REDCDSESGVPLEDMPVEKILEAELAVEPKTEGGCEPGGGGGGG 266
Query: 169 -QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A T+IC+A DKQ F LV+W+K +PHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 267 RSRTASPGTSPNDPVTSICQAADKQFFTLVEWSKRVPHFSELPLDDQVILLRAGWNELLI 326
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI V DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKMR+M MDK ELGCL
Sbjct: 327 ASFSHRSIGVSDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCL 386
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R +LFNPD +GL S VE LREKVY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 387 RATVLFNPDAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSI 444
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/303 (67%), Positives = 241/303 (79%), Gaps = 15/303 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 188 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 247
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +D
Sbjct: 248 RYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---SD 303
Query: 174 QDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
Q + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGW
Sbjct: 304 QGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGW 363
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKT
Sbjct: 364 NELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKT 423
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 424 ELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 483
Query: 343 RSI 345
RSI
Sbjct: 484 RSI 486
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 237/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 124 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 183
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 184 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 242
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 243 GPGGTGGSSSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 302
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 303 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 362
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL S VE LRE+VY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 363 ELGCLRAIILFNPDAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPAL 422
Query: 343 RSI 345
RSI
Sbjct: 423 RSI 425
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 118 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 178 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQKSDQG 236
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 237 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 296
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 297 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 356
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 357 GCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 416
Query: 345 I 345
I
Sbjct: 417 I 417
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 115 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 174
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 175 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 230
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 231 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 290
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 291 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 350
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR II+FNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 351 TELGCLRAIIMFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 410
Query: 342 LRSI 345
LRSI
Sbjct: 411 LRSI 414
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 238/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 123 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 182
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 183 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 241
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 242 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 301
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 302 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 361
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 362 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 421
Query: 343 RSI 345
RSI
Sbjct: 422 RSI 424
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 152 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 211
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 212 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQKSDQG 270
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 271 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 330
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 331 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 390
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 391 GCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 450
Query: 345 I 345
I
Sbjct: 451 I 451
>gi|28628002|gb|AAO18155.1| USP-RXR [unidentified wasp FB-2002]
Length = 285
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/260 (75%), Positives = 224/260 (86%), Gaps = 3/260 (1%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQR
Sbjct: 1 CEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 60
Query: 135 TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLF 194
TKERD +EVESTS +MPVERILEAE+RV+ K E E TNIC AT+KQLF
Sbjct: 61 TKERDQSEVESTSSLHADMPVERILEAEKRVECKLEHLGN---YENAVTNICSATNKQLF 117
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
LV+WAKHIPHFT+LPLEDQ +LLRAGWNELLIA+FSHRS+ DGI+L G+TV+R+SA
Sbjct: 118 TLVEWAKHIPHFTSLPLEDQAMLLRAGWNELLIAAFSHRSVECIDGIVLPTGITVHRASA 177
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AGVG IFDRVL+ELV+KMR+M+MDKTELGCLR+IILFNP+VRGLKS Q VE+LREKVY
Sbjct: 178 QQAGVGAIFDRVLSELVAKMRDMEMDKTELGCLRSIILFNPEVRGLKSAQEVELLREKVY 237
Query: 315 TSLEEYTRVNHSEEPGRFAK 334
+LEEYTR+ +EPGRFAK
Sbjct: 238 AALEEYTRIARPDEPGRFAK 257
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 9/301 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 185 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 244
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 245 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQKSDQG 303
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 304 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 363
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 364 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTEL 423
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRS
Sbjct: 424 GCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRS 483
Query: 345 I 345
I
Sbjct: 484 I 484
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 238/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 140 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 199
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 200 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 258
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 259 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 318
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 319 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 378
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 379 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 438
Query: 343 RSI 345
RSI
Sbjct: 439 RSI 441
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/305 (66%), Positives = 238/305 (78%), Gaps = 13/305 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 77 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 136
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 137 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 195
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 196 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 255
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMD 280
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MD
Sbjct: 256 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMD 315
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP
Sbjct: 316 KTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLP 375
Query: 341 SLRSI 345
+LRSI
Sbjct: 376 ALRSI 380
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 238/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 242 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 301
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 302 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 360
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 361 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 420
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 421 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 480
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 481 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 540
Query: 343 RSI 345
RSI
Sbjct: 541 RSI 543
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 238/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 201 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 260
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 319
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 320 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 379
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 380 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 439
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 440 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 499
Query: 343 RSI 345
RSI
Sbjct: 500 RSI 502
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/300 (67%), Positives = 236/300 (78%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEER K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERHGGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 498
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 238/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 202 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 261
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 262 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 320
Query: 171 ----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 321 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 380
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 381 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 440
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 441 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 500
Query: 343 RSI 345
RSI
Sbjct: 501 RSI 503
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 239/303 (78%), Gaps = 13/303 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 12 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 71
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K + +
Sbjct: 72 YQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGVE 130
Query: 175 DIVNEQQ--------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELL
Sbjct: 131 GPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELL 190
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKT 282
IASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKT
Sbjct: 191 IASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKT 250
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 251 ELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 310
Query: 343 RSI 345
RSI
Sbjct: 311 RSI 313
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/305 (66%), Positives = 237/305 (77%), Gaps = 13/305 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 61 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 120
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 121 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAP-EEMPVDRILEAELAVEQKSDQG 179
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 180 VEGPGGTGGSSSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 239
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMD 280
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MD
Sbjct: 240 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMD 299
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR IILFNPD +GL S VE LRE+VY SLE Y + + E+ GRFAKLLLRLP
Sbjct: 300 KTELGCLRAIILFNPDAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLP 359
Query: 341 SLRSI 345
+LRSI
Sbjct: 360 ALRSI 364
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/305 (66%), Positives = 238/305 (78%), Gaps = 13/305 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 181 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 240
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 241 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 299
Query: 171 ------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 300 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 359
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMD 280
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MD
Sbjct: 360 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMD 419
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP
Sbjct: 420 KTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLP 479
Query: 341 SLRSI 345
+LRSI
Sbjct: 480 ALRSI 484
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/336 (62%), Positives = 243/336 (72%), Gaps = 40/336 (11%)
Query: 21 SSFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKH 69
S+ G+ SS N SS+ I P P HP +KH+C+ICGDR+SGKH
Sbjct: 78 SASGTPRLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKH 137
Query: 70 YGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 129
YGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQ
Sbjct: 138 YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQ 197
Query: 130 EERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKAT 189
EERQR + +GT R+ D V TNIC+A
Sbjct: 198 EERQRAR----------TGT--------------RMXXXXXXXPNDPV-----TNICQAA 228
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTV 249
DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V
Sbjct: 229 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHV 288
Query: 250 YRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE L
Sbjct: 289 HRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 348
Query: 310 REKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
REKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 349 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 384
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/308 (66%), Positives = 241/308 (78%), Gaps = 19/308 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 118 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 178 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 233
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 234 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 293
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREM 277
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M
Sbjct: 294 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDM 353
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLL
Sbjct: 354 RMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLL 413
Query: 338 RLPSLRSI 345
RLP+LRSI
Sbjct: 414 RLPALRSI 421
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/308 (66%), Positives = 241/308 (78%), Gaps = 19/308 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 77 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 136
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 137 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 192
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 193 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 252
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREM 277
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M
Sbjct: 253 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDM 312
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLL
Sbjct: 313 RMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLL 372
Query: 338 RLPSLRSI 345
RLP+LRSI
Sbjct: 373 RLPALRSI 380
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/306 (66%), Positives = 241/306 (78%), Gaps = 19/306 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYCR
Sbjct: 189 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCR 248
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +DQ
Sbjct: 249 YQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---SDQ 304
Query: 175 DI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWN
Sbjct: 305 GVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWN 364
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKM 279
ELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+M
Sbjct: 365 ELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRM 424
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
DKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRL
Sbjct: 425 DKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRL 484
Query: 340 PSLRSI 345
P+LRSI
Sbjct: 485 PALRSI 490
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/305 (66%), Positives = 238/305 (78%), Gaps = 13/305 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 10 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 69
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 70 CRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQG 128
Query: 173 DQDIVNEQQ--------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNE
Sbjct: 129 VEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNE 188
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMD 280
LLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MD
Sbjct: 189 LLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMD 248
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP
Sbjct: 249 KTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLP 308
Query: 341 SLRSI 345
+ RSI
Sbjct: 309 APRSI 313
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/263 (74%), Positives = 225/263 (85%), Gaps = 2/263 (0%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQRTK+RD++EV
Sbjct: 1 RTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKDRDTSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT-NICKATDKQLFQLVDWAKH 202
ESTS +MP+ERI+EAE+RV+ +P +VNE NIC+AT+KQLFQLV WAK
Sbjct: 61 ESTSNMQADMPLERIIEAEKRVEC-NDPLVALVVNENTTVNNICQATNKQLFQLVQWAKL 119
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGI 262
IPHFT+LPL DQVLLLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+A+ GVG I
Sbjct: 120 IPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTANAVGVGNI 179
Query: 263 FDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTR 322
+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYTR
Sbjct: 180 YDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTR 239
Query: 323 VNHSEEPGRFAKLLLRLPSLRSI 345
H EPGRFAKLLLRLP+LRSI
Sbjct: 240 TTHPNEPGRFAKLLLRLPALRSI 262
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/276 (70%), Positives = 226/276 (81%), Gaps = 3/276 (1%)
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 2 GVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQE 61
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICK 187
ERQR++ER +E E S +MPVERILEAE V+ K E D ++ N TNIC
Sbjct: 62 ERQRSRERAESEAECASSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICH 121
Query: 188 ATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGV 247
A DKQLF LV+WAK IPHF+ L LEDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+
Sbjct: 122 AADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGL 181
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVE 307
V+RSSAH AGVG IFDRVLTELVSKM++M+MDK+ELGCLR I+LFNPD +GL + VE
Sbjct: 182 HVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVE 241
Query: 308 MLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
LREKVY +LE YT+ + ++PGRFAKLLLRLP+LR
Sbjct: 242 TLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALR 277
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/276 (69%), Positives = 222/276 (80%), Gaps = 3/276 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 47 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 106
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 107 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELA 166
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + + TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 167 VEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 226
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 227 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDK 286
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
+ELGCLR I+LFNPD +GL + VE LREKVY +L
Sbjct: 287 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATL 322
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/331 (60%), Positives = 238/331 (71%), Gaps = 29/331 (8%)
Query: 42 ISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
+ P + P + K +C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ +
Sbjct: 11 LRPMSAHSPGIMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE 70
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT-------KERDSNEVESTSGTLIE 152
C++DKRQRNRCQYCRYQKCL MGMKRE VQ+ERQ++ +E +S E
Sbjct: 71 CLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQKSVQEERQRIREREEGLECSSAVNEE 130
Query: 153 MPVERILEA----EQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTT 208
MPVE+ILEA EQR ++ + TNIC+ DKQLF LV+WAK IPHF+
Sbjct: 131 MPVEKILEAETSVEQRAELHSDAGSAGSSPHDAVTNICQTADKQLFALVEWAKRIPHFSE 190
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG---------- 258
LPL+DQV+LLRAGWNELLIASFSHRSI+VKDG+LLA ++R +AH AG
Sbjct: 191 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLAN--ELHRDNAHSAGVAAIFDRESV 248
Query: 259 ----VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
VG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE+LREKVY
Sbjct: 249 QSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTGEVELLREKVY 308
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 309 ASLEAYCKQKYPEQQGRFAKLLLRLPALRSI 339
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/301 (66%), Positives = 232/301 (77%), Gaps = 19/301 (6%)
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
R+SGKHYGV+SCEGCKGFFKRTVRKDLSY CR+ R+CIIDKRQRNRCQYCRYQKCL GM
Sbjct: 1 RSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDTRDCIIDKRQRNRCQYCRYQKCLATGM 60
Query: 124 KRE-------AVQEERQRTKERDSNEVESTSGTLI-----EMPVERILEAEQRVDMKQEP 171
KRE AVQEERQR K+++ + +MPVE+IL+AE V+ K E
Sbjct: 61 KREGVTAGEAAVQEERQRGKDKEDSGDGEGDAGGGGGANEDMPVEKILDAELAVEPKTET 120
Query: 172 -ADQDIVNEQQA------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
A+ + A TNIC+A DKQLF LV+WAK +PHF+ L L+DQV+LLRAGWNE
Sbjct: 121 YAELGAASPAGASPNDPVTNICQAADKQLFTLVEWAKRVPHFSELSLDDQVILLRAGWNE 180
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRSISVKDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKMR+M+MDKTEL
Sbjct: 181 LLIASFSHRSISVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTEL 240
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR I+LFNPD +GL S VE LREKVY SLE Y + + ++PGRFAKLLLRLP+LRS
Sbjct: 241 GCLRAIVLFNPDAKGLSSPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRS 300
Query: 345 I 345
I
Sbjct: 301 I 301
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/264 (74%), Positives = 224/264 (84%), Gaps = 3/264 (1%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK+RD++EV
Sbjct: 1 RTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQLVDWAK 201
ESTS +MP+ERI+EAE+RV+ +P A N NIC+AT+KQLFQLV WAK
Sbjct: 61 ESTSNLQADMPLERIIEAEKRVEC-NDPLVALVVNENNTTVNNICQATNKQLFQLVQWAK 119
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
IPHFT+LPL DQVLLLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+AH GVG
Sbjct: 120 LIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGN 179
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYT
Sbjct: 180 IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYT 239
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
R H EPGRFAKLLLRLP+LRSI
Sbjct: 240 RTTHPNEPGRFAKLLLRLPALRSI 263
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/264 (73%), Positives = 225/264 (85%), Gaps = 3/264 (1%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE +NCIIDKRQRNRCQYCRY+KCL+MGMKREAVQEERQRTK+RD++EV
Sbjct: 1 RTVRKDLSYACREDKNCIIDKRQRNRCQYCRYKKCLDMGMKREAVQEERQRTKDRDTSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQLVDWAK 201
ESTS +MP+ERI+EAE+RV+ +P A + N NIC+AT+KQLFQLV WAK
Sbjct: 61 ESTSNMQADMPLERIIEAEKRVEC-NDPLVALEVNENNTTVNNICQATNKQLFQLVQWAK 119
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIPHFT+LP+ DQVLLLRAGWNELLIA+FSHRS+ +D I+LA G+TV + +AH GVG
Sbjct: 120 HIPHFTSLPISDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKQTAHAVGVGN 179
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYT
Sbjct: 180 IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYT 239
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
R H EPGRFAKLLLRLP+LRSI
Sbjct: 240 RTTHPNEPGRFAKLLLRLPALRSI 263
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/350 (58%), Positives = 248/350 (70%), Gaps = 44/350 (12%)
Query: 1 MKPDTATLLV---NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQD 175
CL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 132 CLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ- 190
Query: 176 IVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
+ +NIC+A D+ L QLV+WAKHIPHFT LP+EDQV+LL+AGWNELLIASFSHRS+
Sbjct: 191 --GQDVVSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSM 248
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
V+DGI+LA G+ ++RSSAH+AGVG IFDRVL+EL
Sbjct: 249 GVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSEL------------------------- 283
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE+LREKVY +LEEYTR + +EPGRFAKLLLRLP+L SI
Sbjct: 284 ----------VEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALMSI 323
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/295 (68%), Positives = 232/295 (78%), Gaps = 7/295 (2%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCR
Sbjct: 87 KRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCR 146
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL MGMKREAVQEERQR +ER E+E + G EMPVE+ILEAE V+ K E
Sbjct: 147 YQKCLAMGMKREAVQEERQRNRER-EGELEFSVGVNDEMPVEKILEAETAVEQKTELHSD 205
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+NIC+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 206 GGSAGNSPHDAVSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 265
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI +KDG+LLA + R SAH AGVG IFDRVLTELV+KMR+M+MDK ELGCLR I
Sbjct: 266 SHRSIPLKDGVLLAS--ELQRDSAHSAGVGAIFDRVLTELVNKMRDMQMDKIELGCLRAI 323
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 324 VLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSI 378
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/264 (73%), Positives = 223/264 (84%), Gaps = 3/264 (1%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK+RD++EV
Sbjct: 1 RTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQLVDWAK 201
ESTS +MP+ERI+EAE+RV+ +P A N NIC+AT KQLFQLV WAK
Sbjct: 61 ESTSNLQADMPLERIIEAEKRVEC-NDPLVALVVNENNTTVNNICQATHKQLFQLVQWAK 119
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
+PHFT+LPL DQVLLLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+AH GVG
Sbjct: 120 LVPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGN 179
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
I+DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYT
Sbjct: 180 IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYT 239
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
R H EPGRFAKLLLRLP+LRSI
Sbjct: 240 RTTHPNEPGRFAKLLLRLPALRSI 263
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 195/262 (74%), Positives = 218/262 (83%), Gaps = 16/262 (6%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE ++CIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQRTKERD +EV
Sbjct: 1 RTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHI 203
ESTS +MP+ERILEAE+RVD K E + +LFQLV WAKHI
Sbjct: 61 ESTSSLHADMPIERILEAEKRVDCKVE----------------HDGNYELFQLVTWAKHI 104
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHFT+LPLEDQVLLLR GWNELLIASFSHRSI +KDGI+LA G+TVYRSSA +AGVG IF
Sbjct: 105 PHFTSLPLEDQVLLLRGGWNELLIASFSHRSIGIKDGIVLATGITVYRSSAQQAGVGTIF 164
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
D VL+ELV+KMR+MKMDKTELGCLR+IILFNPDVRGLKS Q V +LREK+Y +LEEYTRV
Sbjct: 165 DHVLSELVTKMRDMKMDKTELGCLRSIILFNPDVRGLKSMQEVSLLREKIYAALEEYTRV 224
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ + GRFAKLLLRLPS+RSI
Sbjct: 225 SCPNDSGRFAKLLLRLPSIRSI 246
>gi|60892894|gb|AAX37293.1| nuclear receptor usp/RXR, partial [Caliroa cerasi]
Length = 258
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/258 (74%), Positives = 215/258 (83%), Gaps = 16/258 (6%)
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK 136
GCKGFFKRTVRKDLSYACRE ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQRTK
Sbjct: 1 GCKGFFKRTVRKDLSYACREEKSCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTK 60
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQL 196
ERD +EVESTS +MPVERILEAE+RV+ K E + +LFQL
Sbjct: 61 ERDQSEVESTSSLHADMPVERILEAEKRVECKTE----------------NQGNYELFQL 104
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WAKHIPHFT+LPLEDQV LLRAGWNELLIA+FSHRSI V+DGI+LA G+TVY SA +
Sbjct: 105 VEWAKHIPHFTSLPLEDQVHLLRAGWNELLIAAFSHRSIEVRDGIVLATGLTVYSDSARQ 164
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
AGV IF+RVLTELV+KMREMKMDKTELGCLR+IILFNPDVRGLKS+Q VE+LREKVY +
Sbjct: 165 AGVNTIFERVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSRQEVELLREKVYAA 224
Query: 317 LEEYTRVNHSEEPGRFAK 334
LEEYTR +EPGRFAK
Sbjct: 225 LEEYTRAARPDEPGRFAK 242
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/271 (70%), Positives = 220/271 (81%), Gaps = 3/271 (1%)
Query: 78 CKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKE 137
CKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KE
Sbjct: 1 CKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKE 60
Query: 138 RDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNICKATDKQLF 194
R EVESTS EMPV++IL+AE V+ K E + TNIC+A DKQLF
Sbjct: 61 RGEIEVESTSSFNEEMPVDKILDAELAVEPKTETYSEGSPGHSTNDPVTNICQAADKQLF 120
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGILL G+ V+RSSA
Sbjct: 121 TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLVTGLHVHRSSA 180
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD +GL + VE LREKVY
Sbjct: 181 HSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVY 240
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 241 ASLESYTKQKYPDQPGRFAKLLLRLPALRSI 271
>gi|47213822|emb|CAF95413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/260 (71%), Positives = 214/260 (82%), Gaps = 6/260 (2%)
Query: 42 ISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI 101
+ P L SKH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+
Sbjct: 27 VPAQPSGTSLSLSKHICTICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCV 86
Query: 102 IDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KE++ NEVESTS +MPVE+ILEA
Sbjct: 87 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKEKNENEVESTSCASEDMPVEKILEA 146
Query: 162 EQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
EQ V+ K E + ++ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV
Sbjct: 147 EQAVEPKTETYIETNLSVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQV 206
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
+LLRAGWNELLIASFSHRSI +KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR
Sbjct: 207 ILLRAGWNELLIASFSHRSIGIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMR 266
Query: 276 EMKMDKTELGCLRTIILFNP 295
+M+MDKTELGCLR I+LFNP
Sbjct: 267 DMQMDKTELGCLRAIVLFNP 286
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/301 (63%), Positives = 221/301 (73%), Gaps = 38/301 (12%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 118 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 177
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREA G+L P +
Sbjct: 178 RQRNRCQYCRYQKCLVMGMKREA--------------------GSLKIFP--------DK 209
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
D +P TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAGWNE
Sbjct: 210 SDQTNDPV----------TNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNE 259
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
LLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK+EL
Sbjct: 260 LLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSEL 319
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
GCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+LRS
Sbjct: 320 GCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRS 379
Query: 345 I 345
I
Sbjct: 380 I 380
>gi|112820331|gb|ABI24019.1| retinoid X receptor beta [Sus scrofa]
Length = 484
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%), Gaps = 9/286 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 200 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 259
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 260 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 318
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 319 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 378
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 379 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 438
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GR
Sbjct: 439 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGR 484
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/273 (71%), Positives = 223/273 (81%), Gaps = 5/273 (1%)
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK 136
GCKGFFKRTVRKDL+Y CR+ ++C++DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K
Sbjct: 1 GCKGFFKRTVRKDLTYTCRDSKDCMVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNK 60
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-PADQDIVNE---QQATNICKATDKQ 192
ER+ EVESTS EMPVE+ILEAE V+ K E AD TNIC+A DKQ
Sbjct: 61 ERE-GEVESTSAVNEEMPVEKILEAEMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQ 119
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
LF LV+WAK IPHF+ L L+DQV+LLRAGWNELLIASFSHRSISVKDGILLA G+ V+R+
Sbjct: 120 LFTLVEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRN 179
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
SAH AGVG IFDRVLTELVSKMR+M+MDK+ELGCLR IILFNPD +GL + VE+LRE+
Sbjct: 180 SAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRER 239
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 240 VYASLESYCKQKYPDQQGRFAKLLLRLPALRSI 272
>gi|147223295|emb|CAN13297.1| retinoid X receptor, beta [Sus scrofa]
Length = 388
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/286 (66%), Positives = 224/286 (78%), Gaps = 9/286 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 104 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 163
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 164 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 222
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 223 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 282
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 283 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 342
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GR
Sbjct: 343 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGR 388
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/316 (61%), Positives = 227/316 (71%), Gaps = 27/316 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCR
Sbjct: 87 KRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCR 146
Query: 115 YQKCLNMGMKREAVQEERQRT-------KERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
YQKCL MGMKRE +Q +RQ + E+E + G EMPVE+ILEAE V+
Sbjct: 147 YQKCLAMGMKREGMQSDRQVSVQEERQRNREREGELEFSVGVNDEMPVEKILEAETAVEQ 206
Query: 168 KQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
K E +NIC+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWN
Sbjct: 207 KTELHSDGGSAGNSPHDAVSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWN 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIFDRVLTE 269
ELLIASFSHRSI +KDG+LLA + R SAH AG VG IFDRVLTE
Sbjct: 267 ELLIASFSHRSIPLKDGVLLAS--ELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTE 324
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV+KMR+M+MDK ELGCLR I+LFNPD +GL + VE+LREKVY SLE Y + + E+
Sbjct: 325 LVNKMRDMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQ 384
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKLLLRLP+LRSI
Sbjct: 385 GRFAKLLLRLPALRSI 400
>gi|28628004|gb|AAO18150.1| USP-RXR [Periplaneta americana]
Length = 300
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/300 (66%), Positives = 223/300 (74%), Gaps = 51/300 (17%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQR
Sbjct: 1 CEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQKCLGMGMKREAVQEERQR 60
Query: 135 TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-----------------PADQDI- 176
TKERD NEVESTS +MPVERILEAE+RV+ K E P +D
Sbjct: 61 TKERDQNEVESTSSLHTDMPVERILEAEKRVECKTEHQVEFELPSIPGGRLLYPQPEDAP 120
Query: 177 --------------------------------VNEQQA-TNICKATDKQLFQLVDWAKHI 203
+E+ A TNIC+AT+KQLF LV+WAKHI
Sbjct: 121 CRGDRDPQYMGAMGEAHTVPSRSRSTAMVLVAAHEKSAVTNICQATNKQLFHLVEWAKHI 180
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PH T+LPL DQVLLLRAGWNELLIA+FSHRS+ VKDGI+LA G+TV+R+SAH+AGVG IF
Sbjct: 181 PHSTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIF 240
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELV+KMREMKMDKTELGCLR++ILFNPDVRGLKS VE LREKVY +LEE++R
Sbjct: 241 DRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSAPDVEALREKVYAALEEHSRT 300
>gi|156145618|gb|ABU53622.1| ultraspiracle [Pyrrhocoris apterus]
Length = 256
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/259 (72%), Positives = 219/259 (84%), Gaps = 3/259 (1%)
Query: 79 KGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER 138
KGFFKRTVRKDLSYACRE R C++DKRQRNRCQYCRYQKCL+MGMKREAVQEERQRTKER
Sbjct: 1 KGFFKRTVRKDLSYACREDRQCLVDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKER 60
Query: 139 DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVD 198
D NEVESTS +MPVER+ +AE+++ K EP+ + E +I +ATDKQL QLV+
Sbjct: 61 DQNEVESTSSFHTDMPVERLRDAERQIGFKVEPS---MKYEGSINSIRQATDKQLLQLVE 117
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WAK IPHF +LP++DQVLLLRAGWN L+IA FSHRSI VKDGI+L PGVTV R++A +AG
Sbjct: 118 WAKQIPHFVSLPIDDQVLLLRAGWNGLMIAGFSHRSIGVKDGIVLGPGVTVSRNTADQAG 177
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
V IFDRVLTELVSKMREM+MDK ELGCLR IIL+NP+VRGLKS VE LREKVY SLE
Sbjct: 178 VDIIFDRVLTELVSKMREMEMDKAELGCLRAIILYNPEVRGLKSVGEVEALREKVYASLE 237
Query: 319 EYTRVNHSEEPGRFAKLLL 337
E+TR++H +EPGRFA+LLL
Sbjct: 238 EHTRLSHPDEPGRFAQLLL 256
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/339 (60%), Positives = 239/339 (70%), Gaps = 19/339 (5%)
Query: 25 SNNHSSSHNNGSSNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFF 82
S HS S + + P P + P + K +C ICGDR+SGKHYGVYSCEGCKGFF
Sbjct: 33 SGMHSISSSEDIKPPFGLRPVPAHSPGLMMSQKRMCVICGDRSSGKHYGVYSCEGCKGFF 92
Query: 83 KRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNE 142
KRTVRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKREAVQEERQR +ER E
Sbjct: 93 KRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNRER-EGE 151
Query: 143 VESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVD 198
+E + EMPVE+IL AE V+ K E + +NIC+ DKQLF LV+
Sbjct: 152 LEFSVSVNEEMPVEKILAAETAVEQKTELHSDGVSAGNSPHDAVSNICQTADKQLFALVE 211
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP------------G 246
WAK IPHF+ LPLEDQV+LLRAGWNELLIASFSHRSI+ KDG+LLA G
Sbjct: 212 WAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAGVG 271
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
R + A VG IFDRVLTELV+KMR+M+MDKTELGCLR I+LFNPD +GL V
Sbjct: 272 AIFDRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSSEV 331
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 332 ELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSI 370
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/309 (65%), Positives = 232/309 (75%), Gaps = 21/309 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCR
Sbjct: 87 KRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCR 146
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---- 170
YQKCL MGMKREAVQEERQR +ER E+E + G EMPVE+ILEAE V+ K E
Sbjct: 147 YQKCLAMGMKREAVQEERQRNRER-EGELEFSVGVNDEMPVEKILEAETAVEQKTELHSD 205
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+NIC+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 206 GGSAGNSPHDAVSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 265
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIFDRVLTELVSKMRE 276
SHRSI +KDG+LLA + R SAH AG VG IFDRVLTELV+KMR+
Sbjct: 266 SHRSIPLKDGVLLAS--ELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRD 323
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDK ELGCLR I+LFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLL
Sbjct: 324 MQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLL 383
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 384 LRLPALRSI 392
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 239/336 (71%), Gaps = 19/336 (5%)
Query: 28 HSSSHNNGSSNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
HS S + + P P + P + K +C ICGDR+SGKHYGVYSCEGCKGFFKRT
Sbjct: 2 HSISSSEDIKPPFGLRPVPAHSPGLMMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRT 61
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKREAVQEERQR +ER E+E
Sbjct: 62 VRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNRER-EGELEF 120
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAK 201
+ EMPVE+IL AE V+ K E + + +NIC+ DKQLF LV+WAK
Sbjct: 121 SVSVNEEMPVEKILAAETAVEQKTELHSDGVSSGNSPHDAVSNICQTADKQLFALVEWAK 180
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP------------GVTV 249
IPHF+ LPLEDQV+LLRAGWNELLIASFSHRSI+ KDG+LLA G
Sbjct: 181 RIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAGVGAIF 240
Query: 250 YRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
R + A VG IFDRVLTELV+KMR+M+MDKTELGCLR I+LFNPD +GL VE+L
Sbjct: 241 DRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSSEVELL 300
Query: 310 REKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
REKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 301 REKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSI 336
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/336 (60%), Positives = 238/336 (70%), Gaps = 19/336 (5%)
Query: 28 HSSSHNNGSSNSSIISPYPPNHP--LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
HS S + + P P + P + K +C ICGDR+SGKHYGVYSCEGCKGFFKRT
Sbjct: 2 HSISSSEDIKPPFGLRPVPAHSPGLMMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRT 61
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKREAVQEERQR +ER E+E
Sbjct: 62 VRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNRER-EGELEF 120
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----EQQATNICKATDKQLFQLVDWAK 201
+ EMPVE+IL AE V+ K E + +NIC+ DKQLF LV+WAK
Sbjct: 121 SVSVNEEMPVEKILAAETAVEQKTELHSDGVSAGNSPHDAVSNICQTADKQLFALVEWAK 180
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP------------GVTV 249
IPHF+ LPLEDQV+LLRAGWNELLIASFSHRSI+ KDG+LLA G
Sbjct: 181 RIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGVLLASELQRDSANSAGVGAIF 240
Query: 250 YRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
R + A VG IFDRVLTELV+KMR+M+MDKTELGCLR I+LFNPD +GL VE+L
Sbjct: 241 DRENVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVLFNPDAKGLSKSSEVELL 300
Query: 310 REKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
REKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 301 REKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSI 336
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 245/372 (65%), Gaps = 44/372 (11%)
Query: 16 GANSMSSFGSNNHSSSHNNGSSNSSIISPY-----PPNHP--LCGSKHLCSICGDRASGK 68
G S S S+ S ++ SS+ I P+ P + P + K LC ICGDR+SGK
Sbjct: 41 GPISNSQISSSEPISGMHSISSSEDIKPPFGLRPMPAHSPGIMLSQKRLCVICGDRSSGK 100
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKRE +
Sbjct: 101 HYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVI 160
Query: 129 QEERQRTKE-----------------RDSNEVESTSGTLIEMPVERILEAEQRVDMKQE- 170
+ + ++ E+E + G EMPVE+ILEAE V+ K E
Sbjct: 161 KHVKWIKEDGKDEGCLTVQEERQRNREREGELEFSVGVNEEMPVEKILEAETAVEQKTEL 220
Query: 171 ---PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
TNIC+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 221 HSDGGSAGNSPHDAVTNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLI 280
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIFDRVLTELVSK 273
ASFSHRSI++KDG+LLA + R SAH AG VG IFDRVLTELV+K
Sbjct: 281 ASFSHRSIALKDGVLLAS--ELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNK 338
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR I LFNPD +GL + VE+LREKVY SLE Y + + E+ GRFA
Sbjct: 339 MRDMQMDKTELGCLRAIALFNPDAKGLSNTSEVELLREKVYASLEAYCKQRYPEQQGRFA 398
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 399 KLLLRLPALRSI 410
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/372 (53%), Positives = 241/372 (64%), Gaps = 36/372 (9%)
Query: 10 VNFNSGGANSMSSFG--SNNHSSSHNNGSSNSSIISPYPPNHP--LCGSKHLCSICGDRA 65
+ F +N +SS S HS S + + P + P + K LC ICGDR+
Sbjct: 38 LGFGPISSNQISSSAPTSGMHSVSSSEDIKPPFGLRPMQSHSPGIMLSQKRLCVICGDRS 97
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL MGMKR
Sbjct: 98 SGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKR 157
Query: 126 EAVQEERQRTKERD----------------SNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
E ++ + ++ +D E+E + G EMPVE+ILEAE V+ K
Sbjct: 158 EGMRAQWKKEDGKDEGWMTVQEERQRNREREGELEFSVGVNDEMPVEKILEAETAVEQKT 217
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
E +N+C+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNEL
Sbjct: 218 ELHSDGGSAGNSPHDAVSNLCQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNEL 277
Query: 226 LIASFSHRSISVKDGILLAP------------GVTVYRSSAHEAGVGGIFDRVLTELVSK 273
LIASFSHRSI +KDG LA G R S A VG IFDRVLTELV+K
Sbjct: 278 LIASFSHRSIPLKDGGSLASELQRDGSHAAGVGAIFDRESVQSAEVGAIFDRVLTELVNK 337
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR I+LFNPD +GL + VE+LREKVY SLE Y + + E+ GRFA
Sbjct: 338 MRDMQMDKTELGCLRAIVLFNPDAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQGRFA 397
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 398 KLLLRLPALRSI 409
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/264 (70%), Positives = 215/264 (81%), Gaps = 8/264 (3%)
Query: 89 DLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG 148
DL+Y CR+ ++CIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ NEVESTS
Sbjct: 1 DLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKERNENEVESTSS 60
Query: 149 TLIEMPVERILEAEQRVDMKQE-------PADQDIVNEQQATNICKATDKQLFQLVDWAK 201
+MPVE+ILEAE V+ K E P + N+ TNIC+A DKQLF LV+WAK
Sbjct: 61 ANEDMPVEKILEAELAVEPKTETYIETNVPMPSNSPNDP-VTNICQAADKQLFTLVEWAK 119
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG
Sbjct: 120 RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA 179
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y
Sbjct: 180 IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYC 239
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
+ + E+PGRFAKLLLRLP+LRSI
Sbjct: 240 KQKYPEQPGRFAKLLLRLPALRSI 263
>gi|297241703|gb|ADI24671.1| retinoid X receptor, partial [Notophthalmus viridescens]
Length = 267
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/270 (68%), Positives = 216/270 (80%), Gaps = 12/270 (4%)
Query: 67 GKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKRE 126
GKHYGVYSCEGCKGFFKRT+RKDL+Y CR+ ++CI+DKRQRNRCQY RYQKCL GMKRE
Sbjct: 1 GKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYSRYQKCLATGMKRE 60
Query: 127 AVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNE------- 179
AVQEERQR +ERD + +E +SG EMPV++ILEAE V+ K +DQ +
Sbjct: 61 AVQEERQRGRERDGD-MEYSSGVNEEMPVDKILEAELAVEQK---SDQSVDGSGTGGSSP 116
Query: 180 -QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSISVK
Sbjct: 117 NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVK 176
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR IILFNPD +
Sbjct: 177 DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAK 236
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
G + VE+LREKVY SLE Y + + E+
Sbjct: 237 GPSNPGEVELLREKVYASLESYCKHKYPEQ 266
>gi|407186432|gb|AFT63499.1| ultraspiracle [Bradysia coprophila]
Length = 447
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/393 (50%), Positives = 259/393 (65%), Gaps = 53/393 (13%)
Query: 1 MKPDTATLLVNFNS--------GGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLC 52
+KPDT+ L+N NS G S S G N S++ G+ N +S YPPNHPL
Sbjct: 49 LKPDTS--LLNGNSMGGFSPGPGSPGSYSQIGMQNISTTSPGGTQN---MSAYPPNHPLS 103
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE + CIIDKRQRNRCQY
Sbjct: 104 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKACIIDKRQRNRCQY 163
Query: 113 CRYQKCLNMGMKREAVQEERQR---TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CRYQKCL GMKREAVQEERQR + + N+ + + ++ ++ V+RI+EAEQ + +
Sbjct: 164 CRYQKCLVCGMKREAVQEERQRGAKLQPKQQNDDLNPTSSVRDLTVDRIMEAEQMSESRT 223
Query: 170 EPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
D I + +N +C+ +KQL+QL+++A+ +P+F L EDQV
Sbjct: 224 --GDNAIPYLRVGSNSMVPQEYKGAVSHLCQMVNKQLYQLIEYARRMPYFDRLQREDQVT 281
Query: 217 LLRAGWNELLIASFSHRSISVKDG--------------------ILLAPGVTVYRSSAHE 256
LLRAGWNELLIA+ + RSI D + L P T++R+SA +
Sbjct: 282 LLRAGWNELLIATVAWRSIEYLDAERTNPDGSIDRRAPVRPPQLMCLGPNFTLHRNSAQQ 341
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGL--KSQQVVEMLREKVY 314
AGV IFDR+L+EL KM+ + +DK+EL CL+ IILFN D+RGL + ++ V M REK+Y
Sbjct: 342 AGVVAIFDRILSELSVKMKRLNIDKSELTCLKAIILFNSDIRGLTVRGKEDVNMCREKIY 401
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+ L+E+ R HS + GRFA+LLLRLP+LRSI +
Sbjct: 402 SCLDEHCRTEHSGDDGRFAQLLLRLPALRSISL 434
>gi|157132575|ref|XP_001656078.1| retinoid x receptor (rxr) [Aedes aegypti]
gi|108884373|gb|EAT48598.1| AAEL000395-PA [Aedes aegypti]
Length = 484
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 236/334 (70%), Gaps = 34/334 (10%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC IDK
Sbjct: 125 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDK 184
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD--SNEVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ +ERI EAE
Sbjct: 185 RQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTS-SVRDVTIERIHEAE 243
Query: 163 QRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTL 209
Q + Q+ D I + +N +C+ +KQ++QL+D+A+ +PHF L
Sbjct: 244 QLSE--QKSGDNAIPYLRVGSNSMIPPEYKGAVSHLCQMVNKQIYQLIDFARRVPHFINL 301
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISV------KDG----------ILLAPGVTVYRSS 253
P +DQV+LLR GWNE+LIA+ + RS+ DG + L P T++R+S
Sbjct: 302 PRDDQVMLLRCGWNEMLIAAVAWRSMEYIETERSSDGSRITVRQPQLMCLGPNFTLHRNS 361
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
A +AGV +FDR+L EL KM+ + + + ELG L+ IILFNPD+RGLK Q+ ++ +REK+
Sbjct: 362 AQQAGVDTLFDRILCELGIKMKRLDVTRAELGVLKAIILFNPDIRGLKCQKEIDGMREKI 421
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
Y L+E+ + H E GRFA+LLLRLP+LRSI +
Sbjct: 422 YACLDEHCKQQHPSEDGRFAQLLLRLPALRSISL 455
>gi|10946383|gb|AAG24886.1|AF305213_1 ultraspiracle isoform-A [Aedes aegypti]
Length = 484
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 236/334 (70%), Gaps = 34/334 (10%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC IDK
Sbjct: 125 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDK 184
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD--SNEVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ +ERI EAE
Sbjct: 185 RQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTS-SVRDVTIERIHEAE 243
Query: 163 QRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTL 209
Q + Q+ D I + +N +C+ +KQ++QL+D+A+ +PHF L
Sbjct: 244 QLSE--QKSGDNAIPYLRVGSNSMIPPEYKGAVSHLCQMVNKQIYQLIDFARRVPHFINL 301
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISV------KDG----------ILLAPGVTVYRSS 253
P +DQV+LLR GWNE+LIA+ + RS+ DG + L P T++R+S
Sbjct: 302 PRDDQVMLLRCGWNEMLIAAVAWRSMEYIETERSSDGSRITVRQPQLMCLGPNFTLHRNS 361
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
A +AGV +FDR+L EL KM+ + + + ELG L+ IILFNPD+RGLK Q+ ++ +REK+
Sbjct: 362 AQQAGVDTLFDRILCELGIKMKRLDVTRAELGVLKAIILFNPDIRGLKCQKEIDGMREKI 421
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
Y L+E+ + H E GRFA+LLLRLP+LRSI +
Sbjct: 422 YACLDEHCKQQHPSEDGRFAQLLLRLPALRSISL 455
>gi|10946385|gb|AAG24887.1|AF305214_1 ultraspiracle isoform-B [Aedes aegypti]
gi|403182355|gb|EJY57333.1| AAEL000395-PB [Aedes aegypti]
Length = 459
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 236/334 (70%), Gaps = 34/334 (10%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC IDK
Sbjct: 100 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDK 159
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD--SNEVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ +ERI EAE
Sbjct: 160 RQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTS-SVRDVTIERIHEAE 218
Query: 163 QRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTL 209
Q + Q+ D I + +N +C+ +KQ++QL+D+A+ +PHF L
Sbjct: 219 QLSE--QKSGDNAIPYLRVGSNSMIPPEYKGAVSHLCQMVNKQIYQLIDFARRVPHFINL 276
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISV------KDG----------ILLAPGVTVYRSS 253
P +DQV+LLR GWNE+LIA+ + RS+ DG + L P T++R+S
Sbjct: 277 PRDDQVMLLRCGWNEMLIAAVAWRSMEYIETERSSDGSRITVRQPQLMCLGPNFTLHRNS 336
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
A +AGV +FDR+L EL KM+ + + + ELG L+ IILFNPD+RGLK Q+ ++ +REK+
Sbjct: 337 AQQAGVDTLFDRILCELGIKMKRLDVTRAELGVLKAIILFNPDIRGLKCQKEIDGMREKI 396
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
Y L+E+ + H E GRFA+LLLRLP+LRSI +
Sbjct: 397 YACLDEHCKQQHPSEDGRFAQLLLRLPALRSISL 430
>gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella]
Length = 415
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 199/374 (53%), Positives = 247/374 (66%), Gaps = 48/374 (12%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L + A S SF + YPPNHPL GSKHLCSI
Sbjct: 25 MKPDTAML--DGLRDDATSPPSFKN-------------------YPPNHPLSGSKHLCSI 63
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 64 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLA 123
Query: 121 MGMKREAVQEERQRTKE--RDSNEVESTSGTLIEMPVERILEAEQRV-DMKQE------P 171
GMKREAVQEERQR D++ S + E+ +ER+LE E V D +E
Sbjct: 124 CGMKREAVQEERQRAARGTEDAHPSSSVQVSAEELSIERLLEMEALVADTSEEFQFLRVG 183
Query: 172 ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
D ++ + +A +++C+ +KQ+ LV WA+ IPHF+ L LEDQV L++A WNELL+ +
Sbjct: 184 PDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLELEDQVTLIKASWNELLLFA 243
Query: 230 FSHRSISV-------KDG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
+ RS+ DG + L PG+T++R+SA +AGVG IFDRVL+EL K
Sbjct: 244 IAWRSMEYLTDERDNVDGSRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELALK 303
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR + +D+ E L+ +IL NPDV+GL S+Q VE+LREK+Y+ L+EY R + E GRFA
Sbjct: 304 MRSLPVDQAEYVALKAVILLNPDVKGLNSRQEVEVLREKMYSCLDEYCRRSRGSEEGRFA 363
Query: 334 KLLLRLPSLRSIEV 347
LLLRLP+LRSI +
Sbjct: 364 SLLLRLPALRSISL 377
>gi|347967177|ref|XP_320944.5| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|347967179|ref|XP_003436029.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|347967181|ref|XP_003436030.1| AGAP002095-PD [Anopheles gambiae str. PEST]
gi|333469722|gb|EAA01003.6| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|333469723|gb|EGK97383.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|333469725|gb|EGK97385.1| AGAP002095-PD [Anopheles gambiae str. PEST]
Length = 515
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/343 (53%), Positives = 239/343 (69%), Gaps = 37/343 (10%)
Query: 39 SSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGR 98
S+I YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +
Sbjct: 147 SNITQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDK 206
Query: 99 NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKE--RDSNEVESTSGTLIEMPVE 156
NC IDKRQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ V+
Sbjct: 207 NCTIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTS-SVRDVVVD 265
Query: 157 RILEAEQRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHI 203
R LEAEQ + Q+ D I + N +C+ +KQ++QL+++A+ +
Sbjct: 266 RFLEAEQIGE--QKSGDNAIPYLRVGQNSMIPSEYKGAVSHLCQMVNKQIYQLIEFARRL 323
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV----------KDG---------ILLA 244
P+F+ LP EDQV LLR+GWNE+LIAS + RS+ DG + L
Sbjct: 324 PNFSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQPQLMCLG 383
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
P T++R+SA +AGV +FDR+L EL KM+ + +++ ELG L+ IILFN D+RGLK ++
Sbjct: 384 PNFTLHRNSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDIRGLKCRK 443
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
++ +REK+Y L+EY + H E GRFA+LLLRLP+LRSI +
Sbjct: 444 EIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISL 486
>gi|347967175|ref|XP_003436028.1| AGAP002095-PC [Anopheles gambiae str. PEST]
gi|333469724|gb|EGK97384.1| AGAP002095-PC [Anopheles gambiae str. PEST]
Length = 484
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/343 (53%), Positives = 239/343 (69%), Gaps = 37/343 (10%)
Query: 39 SSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGR 98
S+I YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +
Sbjct: 116 SNITQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDK 175
Query: 99 NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKE--RDSNEVESTSGTLIEMPVE 156
NC IDKRQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ V+
Sbjct: 176 NCTIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSMKSEEINSTS-SVRDVVVD 234
Query: 157 RILEAEQRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHI 203
R LEAEQ + Q+ D I + N +C+ +KQ++QL+++A+ +
Sbjct: 235 RFLEAEQIGE--QKSGDNAIPYLRVGQNSMIPSEYKGAVSHLCQMVNKQIYQLIEFARRL 292
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV----------KDG---------ILLA 244
P+F+ LP EDQV LLR+GWNE+LIAS + RS+ DG + L
Sbjct: 293 PNFSNLPREDQVTLLRSGWNEMLIASVAWRSMEYIETERPPDGRNDGRVTIRQPQLMCLG 352
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
P T++R+SA +AGV +FDR+L EL KM+ + +++ ELG L+ IILFN D+RGLK ++
Sbjct: 353 PNFTLHRNSAQQAGVDSLFDRILCELAIKMKRLDVNRAELGILKAIILFNSDIRGLKCRK 412
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
++ +REK+Y L+EY + H E GRFA+LLLRLP+LRSI +
Sbjct: 413 EIDQMREKIYACLDEYCKTQHPSEDGRFAQLLLRLPALRSISL 455
>gi|170061655|ref|XP_001866328.1| retinoid x receptor [Culex quinquefasciatus]
gi|167879792|gb|EDS43175.1| retinoid x receptor [Culex quinquefasciatus]
Length = 478
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 185/334 (55%), Positives = 236/334 (70%), Gaps = 34/334 (10%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC IDK
Sbjct: 102 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDK 161
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD--SNEVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ +ERI EAE
Sbjct: 162 RQRNRCQYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTS-SVRDVTIERIHEAE 220
Query: 163 QRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTL 209
Q + Q+ D I + +N +C+ +KQ+FQL+D+A+ +P+FT L
Sbjct: 221 QLSE--QKSGDNAIPYLRVGSNSMIPPEYKGAVSHLCQMVNKQIFQLIDFARRMPNFTNL 278
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISV------KDG----------ILLAPGVTVYRSS 253
+DQV+LLR GWNE+LIA+ + RS+ DG + L P T++R+S
Sbjct: 279 HRDDQVMLLRCGWNEMLIAAVAWRSMEYIETERSPDGSRVTIRQPQLMCLGPNFTLHRNS 338
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
A +AGV +FDR+L EL KM+ + + + ELG L+ IILFNPD+RGLK Q+ ++ +REK+
Sbjct: 339 AQQAGVDTLFDRILCELGIKMKRLDVTRAELGVLKAIILFNPDIRGLKCQKEIDHMREKI 398
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
Y L+EY + H E GRFA+LLLRLP+LRSI +
Sbjct: 399 YGCLDEYCKQQHPSEDGRFAQLLLRLPALRSISL 432
>gi|47216868|emb|CAG11675.1| unnamed protein product [Tetraodon nigroviridis]
Length = 436
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 188/327 (57%), Positives = 221/327 (67%), Gaps = 32/327 (9%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C +DKRQRNR
Sbjct: 92 PMLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNR 151
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILEAE V+ K
Sbjct: 152 CQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILEAEMAVEQKT 210
Query: 170 E----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR------ 219
E + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLR
Sbjct: 211 ELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWCSA 270
Query: 220 ----------------AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
AGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IF
Sbjct: 271 PLGNLGWCVLPNIPLSAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIF 330
Query: 264 DRVLTELVSKMREMKMDK-----TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
D S + + + + +L D +GL + VE+LRE+VY SLE
Sbjct: 331 DSAAETFRSFVFDFSFNAYYNRPSSHSPYSKCLLLPADAKGLSNPSEVELLRERVYASLE 390
Query: 319 EYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 391 AYCKQKYPDQQGRFAKLLLRLPALRSI 417
>gi|18202151|sp|O76202.1|USP_CHOFU RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|3420010|gb|AAC31795.1| Ultraspiracle [Choristoneura fumiferana]
Length = 472
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 248/374 (66%), Gaps = 49/374 (13%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L G + ++S N + YPPNHPL GSKHLCSI
Sbjct: 83 MKPDTAML--------------DGLRDDATSPPNFKN-------YPPNHPLSGSKHLCSI 121
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 122 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLA 181
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLI--EMPVERILEAEQRVDMKQEP------- 171
GMKREAVQEERQR R + + +S + E+ +ER+ E E V E
Sbjct: 182 CGMKREAVQEERQRNA-RGAEDAHPSSSVQVSDELSIERLTEMESLVADPSEEFQFLRVG 240
Query: 172 ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
D ++ +A +++C+ +KQ+ LV WA+ IPHF L L+DQV+L++A WNELL+ +
Sbjct: 241 PDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELDDQVVLIKASWNELLLFA 300
Query: 230 FSHRSISV-------KDG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
+ RS+ DG + L PG+T++R+SA +AGVG IFDRVL+EL K
Sbjct: 301 IAWRSMEYLEDERENGDGTRSTTQPQLMCLMPGMTLHRNSAQQAGVGAIFDRVLSELSLK 360
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR ++MD+ E L+ I+L NPDV+GLK++Q V++LREK+++ L++Y R + S E GRFA
Sbjct: 361 MRTLRMDQAEYVALKAIVLLNPDVKGLKNRQEVDVLREKMFSCLDDYCRRSRSNEEGRFA 420
Query: 334 KLLLRLPSLRSIEV 347
LLLRLP+LRSI +
Sbjct: 421 SLLLRLPALRSISL 434
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/330 (56%), Positives = 232/330 (70%), Gaps = 27/330 (8%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 47 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDK 106
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKE--RDSNEVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL GMKREAVQEERQR D++ S L E+ +ER+LE E
Sbjct: 107 RQRNRCQYCRYQKCLACGMKREAVQEERQRAARGAEDAHPSSSIQIVLQELSIERLLEME 166
Query: 163 QRVDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
V E D ++ +A +++C+ +KQ+ LV WA+ IPHF+ L L+D
Sbjct: 167 SLVADPSEEFQFLRVGPDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFSQLELDD 226
Query: 214 QVLLLRAGWNELLIASFSHRSISV-------KDG---------ILLAPGVTVYRSSAHEA 257
QV+L+++ WNELL+ + + RS+ DG + L PG+T++R+SA A
Sbjct: 227 QVVLIKSCWNELLLFAIAWRSMEYLEDERENADGSRSSAPPQLMCLMPGMTLHRNSALLA 286
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
GVG IFDRVL+EL KMR ++MD+ E L+ IIL NPDV+GLK++ VE LREK+Y+ L
Sbjct: 287 GVGQIFDRVLSELSMKMRALRMDQAEYVALKAIILLNPDVKGLKNRLEVEALREKMYSCL 346
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+EY R + S E GRFA LLLRLP+LRSI +
Sbjct: 347 DEYCRRSRSSEEGRFASLLLRLPALRSISL 376
>gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis]
Length = 410
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 196/372 (52%), Positives = 245/372 (65%), Gaps = 48/372 (12%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L V + A S SF + YPPNHPL GSKHLCSI
Sbjct: 24 MKPDTAMLDVLRDD--ATSPPSFKN-------------------YPPNHPLSGSKHLCSI 62
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 63 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLA 122
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV-DMKQEPADQDIVNE 179
GMKREAVQEERQR + + S+S + E+ +ER+LE E V D +E + E
Sbjct: 123 CGMKREAVQEERQRAARGTEDPLPSSS--VQELSIERLLEMESLVADTSEECQFLRVGPE 180
Query: 180 QQ--------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+++C+ +KQ+ LV WA+ IPHF+ L ++DQVLL++ WNELL+ + +
Sbjct: 181 SNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMDDQVLLIKGAWNELLLFAIA 240
Query: 232 HRSISV-------KDG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
RS+ DG + L PG+T++R+SA +AGVG IFDRVL+EL KMR
Sbjct: 241 WRSMEFLNDERENMDGSRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMR 300
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
++MD+ E L+ IIL NPD++GL ++Q VE+LREK+Y+ L+EY R E GRFA L
Sbjct: 301 HLRMDQAEYVALKAIILLNPDIKGLGNRQEVEVLREKMYSCLDEYCRRVRVSEEGRFASL 360
Query: 336 LLRLPSLRSIEV 347
LLRLP+LRSI +
Sbjct: 361 LLRLPALRSISL 372
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 198/407 (48%), Positives = 258/407 (63%), Gaps = 63/407 (15%)
Query: 1 MKPDTATLLVNFNSGGANSMS----SFGSNNHSSSH--NNGSSNSSIIS----------- 43
+KPD + L N N+GG + S SFG S + N GS +++ S
Sbjct: 20 VKPDISILNEN-NTGGYSPKSASPVSFGVIGLQSMNMTNAGSVAATVASHNPNQIQHGTQ 78
Query: 44 ----PYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RN
Sbjct: 79 QQQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRN 138
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ---RTKERDSNEVESTSGTLIEMPVE 156
CIIDKRQRNRCQYCRYQKCL GMKREAVQEERQ R++ S++ + S ++ ++ +E
Sbjct: 139 CIIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRGTRSQNVRSSDDFNPSSSVRDLTIE 198
Query: 157 RILEAEQRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHI 203
RI+EAEQ+ + Q D I + N +C+ +KQL+Q+V++A+ +
Sbjct: 199 RIIEAEQKSE--QLSGDNAIPFLRVGPNSMVQPDYKGAVSHLCQMVNKQLYQMVEYARKM 256
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG----------------------- 240
PHF L EDQVLLL+AGWNELL+A+ + SI D
Sbjct: 257 PHFAELQREDQVLLLKAGWNELLLANVAWCSIDSLDSDYATSGGHDTSSGRRSPIRQPQQ 316
Query: 241 ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGL 300
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D++EL CL+ IILFNPD+RGL
Sbjct: 317 LFLNHNFSYHRNSAIKAGVATIFDRILSELSVKMKRLNIDRSELSCLKAIILFNPDLRGL 376
Query: 301 KSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
K + +E+ RE+VY L+E+ R H + RFA+LLLRLP+LRSI +
Sbjct: 377 KGRNEIEVCREQVYACLDEHCRTEHPGDDSRFAQLLLRLPALRSISL 423
>gi|6601567|gb|AAF19033.1|AF210734_1 ultraspiracle [Aedes albopictus]
Length = 485
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 183/334 (54%), Positives = 233/334 (69%), Gaps = 34/334 (10%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE +NC IDK
Sbjct: 126 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD--SNEVESTSGTLIEMPVERILEAE 162
RQRNRC YCRYQKCL GMKREAVQEERQR+ + S E+ STS ++ ++ +ERI AE
Sbjct: 186 RQRNRCLYCRYQKCLACGMKREAVQEERQRSSKFSIKSEEINSTS-SVRDVTIERITAAE 244
Query: 163 QRVDMKQEPADQDIVNEQQATN-------------ICKATDKQLFQLVDWAKHIPHFTTL 209
Q + Q+ D I + +N +C+ +KQ++QL+D+A+ +PHFT L
Sbjct: 245 QLSE--QKSGDNAIPYLRVGSNSMIPPEYKGAVSHLCQMVNKQIYQLIDFARRLPHFTNL 302
Query: 210 PLEDQVLLLRAGWNELLIASFSHRS--------------ISVKDGIL--LAPGVTVYRSS 253
+DQV+LLR GWNE+LIA+ + RS IS++ L L P T++R+S
Sbjct: 303 HRDDQVMLLRCGWNEMLIAAVAWRSMEYIETERSPDGSRISIRQPQLMCLGPNFTLHRNS 362
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
A +AGV +FDR+L EL KM+ + + + ELG L+ IILFNPD+RGLK Q + +REK+
Sbjct: 363 AQQAGVDTLFDRILCELGIKMKRLDVTRAELGVLKAIILFNPDIRGLKCQNGDDGMREKI 422
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
Y L+E+ + H E GRFA+LLLRLP+LRSI +
Sbjct: 423 YACLDEHCKQQHPSEDGRFAQLLLRLPALRSISL 456
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 182/300 (60%), Positives = 217/300 (72%), Gaps = 31/300 (10%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DK
Sbjct: 236 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDK--------- 286
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
VQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 287 -------------PVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQKSDQGV 332
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 333 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 392
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 393 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 452
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 453 CLRAIILFNPDAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 512
>gi|195447730|ref|XP_002071344.1| GK25746 [Drosophila willistoni]
gi|194167429|gb|EDW82330.1| GK25746 [Drosophila willistoni]
Length = 483
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 255/428 (59%), Gaps = 84/428 (19%)
Query: 1 MKPDTATLLVNFNSG---GANSMSSFGSNNHSSSH------------NNGSSNSSIISPY 45
+KPD + L + NS A S FG + + H N S++S+ Y
Sbjct: 19 VKPDISQLNDSNNSSFSPKAESPGPFGLQSMTMVHVLPNDNQMVAQAPNASASSATPQQY 78
Query: 46 PPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKR 105
PPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKR
Sbjct: 79 PPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKR 138
Query: 106 QRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDS------------------------- 140
QRNRCQYCRYQKCL+ GMKREAVQEERQR +
Sbjct: 139 QRNRCQYCRYQKCLSCGMKREAVQEERQRGARASAGRPAPPNAGSGGGGGGGGGGGGSAG 198
Query: 141 ------NEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN---------- 184
+E TS + + +ER+LEAEQR + + D+ + + N
Sbjct: 199 VGGTGQDEFMPTSVSR-DFTIERLLEAEQRAE--NQSGDRALSFLRVGPNSTVQPEYKGA 255
Query: 185 ---ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
+C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI D +
Sbjct: 256 VSALCQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIGSVDDV 315
Query: 242 ----------------------LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
L + +R+SA +AGV IFDR+L+EL KM+ + +
Sbjct: 316 SSGMGHDSAFERRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMKRLNL 375
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R H + GRFA+LLLRL
Sbjct: 376 DRRELTCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQLLLRL 435
Query: 340 PSLRSIEV 347
P+LRSI +
Sbjct: 436 PALRSISL 443
>gi|363809055|dbj|BAL41655.1| ultraspiracle protein [Scirpophaga incertulas]
Length = 408
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 195/372 (52%), Positives = 246/372 (66%), Gaps = 50/372 (13%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L V + A S SF + YPPNHPL GSKHLCSI
Sbjct: 24 MKPDTAMLDVLRDD--ATSPPSFKN-------------------YPPNHPLSGSKHLCSI 62
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 63 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRGERNCIIDKRQRNRCQYCRYQKCLA 122
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------AD 173
GMKREAVQEERQR R +++ +S ++ E+ +ER+LE E V E D
Sbjct: 123 CGMKREAVQEERQRAA-RGTDDAHPSS-SVQELSIERLLEMESLVSDTTEECQFLRVGPD 180
Query: 174 QDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
++ + +A +++C+ +KQ+ LV WA+ IPHF L L+DQVLL++ WNELL+ + +
Sbjct: 181 SNVPPKFRAPVSSLCQIGNKQIAALVMWARDIPHFGQLELDDQVLLIKGAWNELLLFAIA 240
Query: 232 HRSISV-------KDG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
RS+ DG + L PG+T++R+SA +AGVG IFDRVL+EL KMR
Sbjct: 241 WRSMEFLNDERENMDGSRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMR 300
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
++MD+ E L+ IIL NPD++GL ++Q E+LREK+Y+ L+EY R E GRFA L
Sbjct: 301 HLRMDQAEYVALKAIILLNPDIKGLGNRQ--EVLREKMYSCLDEYCRRVRVSEEGRFASL 358
Query: 336 LLRLPSLRSIEV 347
LLRLP+LRSI +
Sbjct: 359 LLRLPALRSISL 370
>gi|2895868|gb|AAC03056.1| ultraspiracle [Chironomus tentans]
Length = 552
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 185/368 (50%), Positives = 242/368 (65%), Gaps = 43/368 (11%)
Query: 17 ANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCE 76
AN++ G+ N ++ N S YPPNHPL GSKHLCSICGDRASGKHYGVYSCE
Sbjct: 162 ANNILGMGNGNCGNTANGKQSQ------YPPNHPLSGSKHLCSICGDRASGKHYGVYSCE 215
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR-- 134
GCKGFFKRTVRKDLSYACRE RNC+IDK+QRNRCQYCRYQKCLN GMKREAVQEERQR
Sbjct: 216 GCKGFFKRTVRKDLSYACREERNCVIDKKQRNRCQYCRYQKCLNCGMKREAVQEERQRGG 275
Query: 135 -TKERDSNEVESTSGTLIEMP-----VERILEAEQRVD----------MKQEPADQDIVN 178
+++ D + ST + P VER++EA+Q + ++ ++ I
Sbjct: 276 KSQKGDDMSISSTQSLVNNGPGRDITVERLMEADQMSEARCGDKSIQYLRVAASNTMIPP 335
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
E +A + IC +KQ+FQ +D+ + +PHFT LPL DQ+ LL+ NELLI + ++ SI
Sbjct: 336 EYRAPVSAICAMVNKQVFQHMDFCRRLPHFTKLPLNDQMYLLKQSLNELLILNIAYMSIQ 395
Query: 237 V-------KDGIL----------LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
DG L L+ T+ R+ A +AGV IFDR+L+EL KM+ + +
Sbjct: 396 YVEPDRRNADGSLERRQISQQMCLSRNYTLGRNMAVQAGVVQIFDRILSELSVKMKRLDL 455
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D TEL L++I++FNPDVR L ++ +++LR ++Y SL+EY R H E GRFA+LLLRL
Sbjct: 456 DATELCLLKSIVVFNPDVRTLDDRKSIDLLRSRIYASLDEYCRQKHPNEDGRFAQLLLRL 515
Query: 340 PSLRSIEV 347
P+LRSI +
Sbjct: 516 PALRSISL 523
>gi|198470596|ref|XP_001355352.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
gi|198145527|gb|EAL32409.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
Length = 487
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 180/372 (48%), Positives = 236/372 (63%), Gaps = 71/372 (19%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 80 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 139
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI------------- 151
RQRNRCQYCRYQKCL+ GMKREAVQEERQR + + + G++
Sbjct: 140 RQRNRCQYCRYQKCLSCGMKREAVQEERQRGARSAAGRLSAGGGSVGGGSVGSGSGGGGG 199
Query: 152 --------------------EMPVERILEAEQRVDMKQEPADQDIVNEQQATN------- 184
+ +ER+L+AEQR + + D+ + + N
Sbjct: 200 SGGSVGGNGADEFMANNVSRDFTIERLLDAEQRAEAQS--GDRALAFLRVGPNSTVQPDY 257
Query: 185 ------ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SV 237
+C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI S+
Sbjct: 258 KGAVSALCQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIVSL 317
Query: 238 KDG----------------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
D + L + +R+SA +AGV IFDR+L+EL KM+
Sbjct: 318 DDAMATGMGHDSAFERRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMK 377
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+ +D+ EL CL+ IIL+NPD+RG+K++ +E+ REKVY L+E+ RV H + GRFA+L
Sbjct: 378 RLNLDRRELACLKAIILYNPDMRGIKNRAEIEICREKVYACLDEHCRVEHPGDDGRFAQL 437
Query: 336 LLRLPSLRSIEV 347
LLRLP+LRSI +
Sbjct: 438 LLRLPALRSISL 449
>gi|194912875|ref|XP_001982583.1| GG12659 [Drosophila erecta]
gi|190648259|gb|EDV45552.1| GG12659 [Drosophila erecta]
Length = 507
Score = 346 bits (887), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 181/395 (45%), Positives = 240/395 (60%), Gaps = 77/395 (19%)
Query: 30 SSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKD 89
+ ++ + S++ YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKD
Sbjct: 75 APNSAAGAASAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKD 134
Query: 90 LSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES---- 145
L+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 135 LTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGG 194
Query: 146 ----------------------------------TSGTLIEMPVERILEAEQRVD----- 166
T+ + +ERI+EAEQR +
Sbjct: 195 SSGPGSVGGSSSGGGGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGD 254
Query: 167 -----MKQEPADQDIVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
++ P + + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A
Sbjct: 255 RALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKA 314
Query: 221 GWNELLIA---------------------------SFSHRSISVK-DGILLAPGVTVYRS 252
W ELLIA SF RS ++ + L + +R+
Sbjct: 315 AWIELLIANVAWCSIVSLDDGGAGGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRN 374
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
SA +AGV IFDR+L+EL KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REK
Sbjct: 375 SAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREK 434
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
VY L+E+ R+ H + GRFA+LLLRLP+LRSI +
Sbjct: 435 VYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 469
>gi|409178673|gb|AFV25502.1| ultraspiracle, partial [Drosophila simulans]
Length = 468
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 233/380 (61%), Gaps = 77/380 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 61 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 120
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 121 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSGGG 180
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 181 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 240
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 241 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 300
Query: 229 --------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
SF RS ++ + L + +R+SA +AGV IFDR+L
Sbjct: 301 IVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRIL 360
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H
Sbjct: 361 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 420
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 421 DDGRFAQLLLRLPALRSISL 440
>gi|409178675|gb|AFV25503.1| ultraspiracle, partial [Drosophila mauritiana]
Length = 474
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 233/380 (61%), Gaps = 77/380 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 67 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 126
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 127 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSGGG 186
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 187 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 246
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 247 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 306
Query: 229 --------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
SF RS ++ + L + +R+SA +AGV IFDR+L
Sbjct: 307 IVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRIL 366
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H
Sbjct: 367 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 426
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 427 DDGRFAQLLLRLPALRSISL 446
>gi|195397487|ref|XP_002057360.1| GJ16389 [Drosophila virilis]
gi|194147127|gb|EDW62846.1| GJ16389 [Drosophila virilis]
Length = 499
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/377 (48%), Positives = 234/377 (62%), Gaps = 74/377 (19%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 85 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLAYACRENRNCIIDK 144
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNE---------------------- 142
RQRNRCQYCRYQKCL+ GMKREAVQEERQR +
Sbjct: 145 RQRNRCQYCRYQKCLSCGMKREAVQEERQRGARTSTGRLGAAGGGGGGGAAGGGLAAGGG 204
Query: 143 -------------VESTSGTLI------EMPVERILEAEQRVD----------MKQEPAD 173
STS + + +ER+L+AEQR + ++ P
Sbjct: 205 IGIGSSGAGGVGGTNSTSDDFMPNSVSRDFTIERLLDAEQRAEAHSGDRALTFLRVGPNS 264
Query: 174 QDIVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
+ + A + +C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ +
Sbjct: 265 TVQPDYKGAVSALCQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAW 324
Query: 233 RSISVKDGILLAPG----------------------VTVYRSSAHEAGVGGIFDRVLTEL 270
SI D L G + +R+SA +AGV IFDR+L+EL
Sbjct: 325 CSIESLDDALAGIGHDSAFERRSPVLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSEL 384
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +E+ REKVY L+E+ R+ H + G
Sbjct: 385 SVKMKRLNLDRRELSCLKAIILYNPDIRGIKNRADIELCREKVYACLDEHCRLEHPGDDG 444
Query: 331 RFAKLLLRLPSLRSIEV 347
RFA+LLLRLP+LRSI +
Sbjct: 445 RFAQLLLRLPALRSISL 461
>gi|17136580|ref|NP_476781.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|442614874|ref|NP_001259168.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|137178|sp|P20153.1|USP_DROME RecName: Full=Protein ultraspiracle; AltName: Full=Chorion factor
1; AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=XR2C
gi|103505|pir||S11513 usp protein - fruit fly (Drosophila sp.)
gi|8833|emb|CAA37496.1| unnamed protein product [Drosophila melanogaster]
gi|3676116|emb|CAA21122.1| EG:22E5.1 [Drosophila melanogaster]
gi|7290245|gb|AAF45707.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|17862122|gb|AAL39538.1| LD09973p [Drosophila melanogaster]
gi|220943484|gb|ACL84285.1| usp-PA [synthetic construct]
gi|220952764|gb|ACL88925.1| usp-PA [synthetic construct]
gi|440216351|gb|AGB95014.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|227126|prf||1614351A retinoid X receptor
Length = 508
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 233/380 (61%), Gaps = 77/380 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 151 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGG 210
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 211 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 270
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 271 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 330
Query: 229 --------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
SF RS ++ + L + +R+SA +AGV IFDR+L
Sbjct: 331 IVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRIL 390
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H
Sbjct: 391 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 450
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 451 DDGRFAQLLLRLPALRSISL 470
>gi|195347797|ref|XP_002040438.1| GM18927 [Drosophila sechellia]
gi|194121866|gb|EDW43909.1| GM18927 [Drosophila sechellia]
Length = 505
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 233/380 (61%), Gaps = 77/380 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 88 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 147
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 148 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSTSGGG 207
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 208 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 267
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 268 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 327
Query: 229 --------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
SF RS ++ + L + +R+SA +AGV IFDR+L
Sbjct: 328 IVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRIL 387
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H
Sbjct: 388 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 447
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 448 DDGRFAQLLLRLPALRSISL 467
>gi|409178665|gb|AFV25498.1| ultraspiracle, partial [Drosophila limbata]
Length = 442
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 179/364 (49%), Positives = 234/364 (64%), Gaps = 64/364 (17%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQR
Sbjct: 57 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQR 116
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV------------------------ 143
NRCQYCRYQKCL+ GMKREAVQEERQR + +
Sbjct: 117 NRCQYCRYQKCLSCGMKREAVQEERQRGARTSTGRLNAAGGGAAGGVSGAGGVGGSGSVG 176
Query: 144 -ESTSGTLI------EMPVERILEAEQRVD----------MKQEPADQDIVNEQQATN-I 185
S S + + +ER+L+AEQR + ++ P + + A + +
Sbjct: 177 ANSASDDFMPNSVSRDFTIERLLDAEQRAEAHSGDRALSFLRVGPNSTVQPDYKGAVSAL 236
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG---- 240
C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + RSI S+ D
Sbjct: 237 CQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWRSIVSLDDALSGM 296
Query: 241 -----------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ E
Sbjct: 297 GHDSAFERRSPVLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRE 356
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
L CL+ IIL+NPD+RG+K++ +E+ REKVY L+E+ RV H + GRFA+LLLRLP+LR
Sbjct: 357 LSCLKAIILYNPDIRGIKNRADIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALR 416
Query: 344 SIEV 347
SI +
Sbjct: 417 SISL 420
>gi|195477854|ref|XP_002100326.1| GE16988 [Drosophila yakuba]
gi|194187850|gb|EDX01434.1| GE16988 [Drosophila yakuba]
Length = 509
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 180/381 (47%), Positives = 233/381 (61%), Gaps = 78/381 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 151 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSVGG 210
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 211 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 270
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 271 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 330
Query: 229 ---------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRV 266
SF RS ++ + L + +R+SA +AGV IFDR+
Sbjct: 331 IVSLDDGGAGGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRI 390
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
L+EL KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R+ H
Sbjct: 391 LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 450
Query: 327 EEPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 451 GDDGRFAQLLLRLPALRSISL 471
>gi|8096|emb|CAA36827.1| unnamed protein product [Drosophila melanogaster]
Length = 507
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 181/379 (47%), Positives = 233/379 (61%), Gaps = 76/379 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 151 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGG 210
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 211 GGEGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 270
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 271 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 330
Query: 229 -------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
SF RS ++ + L + +R+SA +AGV IFDR+L+
Sbjct: 331 IVSLDDGGGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILS 390
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H +
Sbjct: 391 ELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGD 450
Query: 329 PGRFAKLLLRLPSLRSIEV 347
GRFA+LLLRLP+LRSI +
Sbjct: 451 DGRFAQLLLRLPALRSISL 469
>gi|409178679|gb|AFV25505.1| ultraspiracle, partial [Drosophila santomea]
Length = 474
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 180/381 (47%), Positives = 233/381 (61%), Gaps = 78/381 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 66 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 125
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 126 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSVGG 185
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 186 GGGSGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 245
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 246 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 305
Query: 229 ---------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRV 266
SF RS ++ + L + +R+SA +AGV IFDR+
Sbjct: 306 IVSLDDGGAGGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRI 365
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
L+EL KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R+ H
Sbjct: 366 LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 425
Query: 327 EEPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 426 GDDGRFAQLLLRLPALRSISL 446
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 208/285 (72%), Gaps = 11/285 (3%)
Query: 59 SICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118
SICG R+ +HYGVYSCEGCKGFFKRTVRK+L+Y CR+ RNC IDK+QRNRCQYCRYQKC
Sbjct: 2 SICGQRSLRRHYGVYSCEGCKGFFKRTVRKNLTYTCRDNRNCDIDKKQRNRCQYCRYQKC 61
Query: 119 LNMGMKREAVQEERQRTKERDSNE---VESTSGTLI------EMPVERILEAEQRVDMKQ 169
L +GMK+EAVQEER + S + G + EMPVE I +AE ++M
Sbjct: 62 LQVGMKQEAVQEERVKNSTPTSKTTLPIAIADGFPLPTYGNDEMPVEAIRDAESTLNMNS 121
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
P + + NIC+A DKQLF LV+WAK IPHF L ++DQV+LLR+GWNELLIA+
Sbjct: 122 VPYVE--MQSNPVLNICQAADKQLFNLVEWAKKIPHFCDLCVDDQVILLRSGWNELLIAA 179
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
FS RSI+V+DG+LL+ G ++R+SAH AG+G IFDR+LTELV++MR +KMDKTELGCLR
Sbjct: 180 FSFRSIAVEDGLLLSTGHYIHRTSAHNAGIGAIFDRILTELVNQMRYLKMDKTELGCLRA 239
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
IILFNPDVRGL S VE RE VY +LE Y + ++ RFAK
Sbjct: 240 IILFNPDVRGLTSADRVEKYRELVYGALEAYVKKRFPDQLCRFAK 284
>gi|189031270|gb|ACD74808.1| ultraspiracle isoform 1 [Helicoverpa armigera]
Length = 414
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 182/359 (50%), Positives = 231/359 (64%), Gaps = 48/359 (13%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L + S+ YPPNHPL GSKHLCSI
Sbjct: 25 MKPDTAML---------------------DGLRDDSTPPPAFKNYPPNHPLSGSKHLCSI 63
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 64 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLA 123
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------AD 173
GMKREAVQEERQR + S+S + E+ +ER+LE E V E D
Sbjct: 124 CGMKREAVQEERQRGARGTEDAHPSSSVQVQELSIERLLEMESLVADPSEEFQFLRVGPD 183
Query: 174 QDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
++ + +A +++C+ +KQ+ LV WA+ IPHF+ L LEDQ+LL++ WNELL+ + +
Sbjct: 184 SNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLELEDQILLIKGSWNELLLFAIA 243
Query: 232 HRSISV----KDGI--------------LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
RS+ +DG+ L PG+T++R+SA +AGVG IFDRVL+EL K
Sbjct: 244 WRSMEYLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLK 303
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
MR +++D+ E L+ IIL NPDV+GLK++Q VE+LREK++ L+EY R + E GRF
Sbjct: 304 MRSLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRGSEEGRF 362
>gi|409178677|gb|AFV25504.1| ultraspiracle, partial [Drosophila teissieri]
Length = 472
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/381 (47%), Positives = 233/381 (61%), Gaps = 78/381 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 64 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 123
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 124 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGASSGPGSVGGSSSVGG 183
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 184 GGAGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 243
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 244 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 303
Query: 229 ---------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRV 266
SF RS ++ + L + +R+SA +AGV IFDR+
Sbjct: 304 IVSLDDGGAGGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRI 363
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
L+EL KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R+ H
Sbjct: 364 LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 423
Query: 327 EEPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 424 GDDGRFAQLLLRLPALRSISL 444
>gi|161769557|gb|ABX79144.1| ultraspiracle [Spodoptera litura]
gi|388325217|gb|AFK27932.1| Ecdysone receptor [Spodoptera litura]
Length = 467
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 233/354 (65%), Gaps = 32/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 63 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 121
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 122 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 181
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 182 EAVQEERQRAARGAEDAHPSSSVQVQELSIERLLEMESMVADPTEEYQFLRVGPDSNVPP 241
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF +L LEDQ+LL++A WNELL+ + + RS+
Sbjct: 242 KFRAPVSSLCQIGNKQIAALVVWARDIPHFNSLHLEDQMLLIKASWNELLLFAIAWRSME 301
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 302 YLTEEREVVDSSGNRSTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 361
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
D+ E L+ IIL NPDV+GLK++ VE+LREK+++ L+EY R + E GRF
Sbjct: 362 FDQAEYVALKAIILLNPDVKGLKNRLDVELLREKMFSCLDEYVRRSRGGEEGRF 415
>gi|409178669|gb|AFV25500.1| ultraspiracle, partial [Drosophila caribiana]
Length = 418
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 230/352 (65%), Gaps = 57/352 (16%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 67 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 126
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVE----------------STSG 148
RQRNRCQYCRYQKCL+ GMKREAVQEERQR + + + S
Sbjct: 127 RQRNRCQYCRYQKCLSCGMKREAVQEERQRGARTSTGRLSAASSGVSGAGGSGNLGANSA 186
Query: 149 TLIEMP--------VERILEAEQRVD----------MKQEPADQDIVNEQQATN-ICKAT 189
+ MP +ER+L+AEQR + ++ P + + A + +C+
Sbjct: 187 SDDFMPNSVSRDFTIERLLDAEQRAEAHSGDRALSFLRVGPTSTVQPDYKGAVSALCQVV 246
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-------- 240
+KQL+Q+V++A+ +PHF LPLEDQV+LL+A WNELLIA+ + SI S+ D
Sbjct: 247 NKQLYQMVEYARLMPHFAQLPLEDQVILLKAAWNELLIANVAWCSIVSLDDALSGMGHDS 306
Query: 241 -------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL CL
Sbjct: 307 AFERRSPVLQPQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELSCL 366
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
+ IIL+NPD+RG+K++ +E+ REKVY L+++ RV H + GRFA+LLLRL
Sbjct: 367 KAIILYNPDIRGIKNRADIELCREKVYACLDDHCRVEHPGDDGRFAQLLLRL 418
>gi|417347487|gb|AFX60116.1| nuclear receptor USP isoform 1 [Spodoptera frugiperda]
Length = 466
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 234/354 (66%), Gaps = 32/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 62 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 120
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 121 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 180
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 181 EAVQEERQRAARGTEDAHPSSSVQVQELSIERLLEMESLVADPTEEYQFLRVGPDSNVPP 240
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF++L LEDQ+LL++ WNELL+ + + RS+
Sbjct: 241 KFRAPVSSLCQIGNKQIAALVVWARDIPHFSSLELEDQMLLIKGSWNELLLFAIAWRSME 300
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 301 YLTEEREVVDSSGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+D+ E L+ IIL NPDV+GLK++ VE+LREK+++ L+EY R + E GRF
Sbjct: 361 VDQAEYVALKAIILLNPDVKGLKNRPEVEILREKMFSCLDEYVRRSRGGEEGRF 414
>gi|409178663|gb|AFV25497.1| ultraspiracle, partial [Drosophila funebris]
Length = 433
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/361 (49%), Positives = 235/361 (65%), Gaps = 61/361 (16%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQR
Sbjct: 45 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQR 104
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNE--------------------VESTS 147
NRCQYCRYQKCL+ GMKREAVQEERQR + V ++S
Sbjct: 105 NRCQYCRYQKCLSCGMKREAVQEERQRGARTSTGRLSAGGGAAGGGSGTGGVSGNVGASS 164
Query: 148 GTLIEMP--------VERILEAEQRVD----------MKQEPADQDIVNEQQATN-ICKA 188
+ MP +ER+L+AEQR + ++ P + + A + +C+
Sbjct: 165 ASDEFMPNSVSRDLTIERLLDAEQRAEAHSGDRALSFLRVGPNSSVQPDYKGAVSALCQV 224
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG------- 240
+KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI S+ D
Sbjct: 225 VNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIVSLDDALSGMGHD 284
Query: 241 --------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL C
Sbjct: 285 SAFERRSPVLQPQQLFLNQNFSYHRNSAIKAGVHTIFDRILSELSVKMKRLNLDRRELSC 344
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346
L+ IIL+NPD+RG+K++ +E+ REKVY L+E+ RV H + GRFA+LLLRLP+LRSI
Sbjct: 345 LKAIILYNPDIRGIKNRAEIELCREKVYACLDEHCRVEHPGDDGRFAQLLLRLPALRSIS 404
Query: 347 V 347
+
Sbjct: 405 L 405
>gi|409178681|gb|AFV25506.1| ultraspiracle, partial [Drosophila malerkotliana]
Length = 463
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 179/372 (48%), Positives = 231/372 (62%), Gaps = 69/372 (18%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 70 YPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 129
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI------------- 151
RQRNRCQYCRYQKCL GMKREAVQEERQR + + G
Sbjct: 130 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNSTGRLSVGGGGGTPSSVGGASSVGGG 189
Query: 152 -----------------EMPVERILEAEQRVD----------MKQEPADQDIVNEQQATN 184
+ +ER+++AEQR + ++ P + + A +
Sbjct: 190 LGSGNGSDDFMANNVSRDFTIERLMDAEQRAEAHCGDRALSFLRVGPNSTVQPDYKGAVS 249
Query: 185 -ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA--------------- 228
+C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+AGWNELLIA
Sbjct: 250 ALCQVVNKQLYQMVEYARMMPHFAQLPLDDQVILLKAGWNELLIANVAWCSIVSLDDTMG 309
Query: 229 ------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
SF RS ++ + L + +R+SA +AGV IFDR+L+EL KM+
Sbjct: 310 GGGGGGGLSHDGSFDRRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDRILSELSVKMK 369
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+ +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R H + GRFA+L
Sbjct: 370 RLNLDRRELTCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRQEHPGDDGRFAQL 429
Query: 336 LLRLPSLRSIEV 347
LLRLP+LRSI +
Sbjct: 430 LLRLPALRSISL 441
>gi|417347494|gb|AFX60117.1| nuclear receptor USP isoform 2 [Spodoptera frugiperda]
Length = 414
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 234/354 (66%), Gaps = 32/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 10 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 68
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 69 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 128
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 129 EAVQEERQRAARGTEDAHPSSSVQVQELSIERLLEMESLVADPTEEYQFLRVGPDSNVPP 188
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF++L LEDQ+LL++ WNELL+ + + RS+
Sbjct: 189 KFRAPVSSLCQIGNKQIAALVVWARDIPHFSSLELEDQMLLIKGSWNELLLFAIAWRSME 248
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 249 YLTEEREVVDSSGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 308
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+D+ E L+ IIL NPDV+GLK++ VE+LREK+++ L+EY R + E GRF
Sbjct: 309 VDQAEYVALKAIILLNPDVKGLKNRPEVEILREKMFSCLDEYVRRSRGGEEGRF 362
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 177/268 (66%), Positives = 201/268 (75%), Gaps = 31/268 (11%)
Query: 101 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILE 160
++DKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ EVESTS EMPVE+ILE
Sbjct: 1 MVDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRNKERE-GEVESTSAVNEEMPVEKILE 59
Query: 161 AEQRVDMKQE-----------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTL 209
AE V+ K E P D TNIC+A DKQLF LV+WAK IPHF+ L
Sbjct: 60 AEVAVEQKTELHTDGSSGGSSPNDP-------VTNICQAADKQLFTLVEWAKRIPHFSEL 112
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG----------- 258
L+DQV+LLRAGWNELLIASFSHRSISVKDGILLA G+ V+R+SAH AG
Sbjct: 113 ALDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNA 172
Query: 259 -VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
VG IFDRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL + VE+LRE+VY SL
Sbjct: 173 EVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASL 232
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 233 ESYCKQKYPDQQGRFAKLLLRLPALRSI 260
>gi|388325219|gb|AFK27933.1| ultraspiracle [Spodoptera litura]
Length = 414
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 232/354 (65%), Gaps = 32/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 10 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 68
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 69 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 128
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EA QEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 129 EAAQEERQRAARGAEDAHPSSSVQVQELSIERLLEMESMVADPTEEYQFLRVGPDSNVPP 188
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF +L LEDQ+LL++A WNELL+ + + RS+
Sbjct: 189 KFRAPVSSLCQIGNKQIAALVVWARDIPHFNSLHLEDQMLLIKASWNELLLFAIAWRSME 248
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 249 YLTEEREVVDSSGNRSTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 308
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
D+ E L+ IIL NPDV+GLK++ VE+LREK+++ L+EY R + E GRF
Sbjct: 309 FDQAEYVALKAIILLNPDVKGLKNRLDVELLREKMFSCLDEYVRRSRGGEEGRF 362
>gi|324514717|gb|ADY45963.1| Retinoic acid receptor RXR-gamma, partial [Ascaris suum]
Length = 473
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 217/316 (68%), Gaps = 18/316 (5%)
Query: 43 SPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
SP+ HPL +KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y+CRE RNC+I
Sbjct: 124 SPFT-EHPLTSAKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYSCRENRNCVI 182
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN-----------EVESTSGTLI 151
DKRQRNRCQYCRY+KC NMGMKREAVQEERQ ++ + E ESTSG+
Sbjct: 183 DKRQRNRCQYCRYRKCKNMGMKREAVQEERQTSRSEATKMLVAHMIPNQMEAESTSGSSN 242
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
EMP E I +AE+ E +I E N ++ Q+ ++VDWA IP F+ +P+
Sbjct: 243 EMPAESIADAEE----ASEALLNNIKIESNDLNSGESVQWQVMRIVDWALMIPSFSDIPI 298
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
EDQ L+ +GWNEL++A + R S ++ ++L P + R A + G +FDR+L EL
Sbjct: 299 EDQSRLIYSGWNELILADVAFR--STREKLMLWPERPMERREAEKRGCQALFDRILRELT 356
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
KMRE+ +D+ ELG LR+IILFNPDV GL+ +VE REKVY LEEY R + + R
Sbjct: 357 GKMRELVVDRMELGALRSIILFNPDVPGLQCSSLVESQREKVYHCLEEYCRQQNPHQSQR 416
Query: 332 FAKLLLRLPSLRSIEV 347
FAKLLLRLP+LRS+ +
Sbjct: 417 FAKLLLRLPALRSLSL 432
>gi|187940918|gb|ACD39740.1| ultraspiracle protein [Spodoptera exigua]
Length = 412
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 233/354 (65%), Gaps = 34/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 10 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 68
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 69 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 128
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR E S ++ E+ +ER+LE E V E D ++
Sbjct: 129 EAVQEERQRAAR--GTEDAHPSSSVQELSIERLLEMESLVADPSEEYQFLRVGPDSNVPP 186
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF++L LEDQ LL+++ WNELL+ + + RS+
Sbjct: 187 KFRAPVSSLCQIGNKQIAALVVWARDIPHFSSLELEDQTLLIKSSWNELLLFAIAWRSME 246
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 247 YLTEEREVVDSSGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 306
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+D+ E L+ IIL NPDV+GLK++ VE+LREK+++ L+EY R + E GRF
Sbjct: 307 VDQAEYVALKAIILLNPDVKGLKNRAEVEILREKMFSCLDEYVRRSRGGEEGRF 360
>gi|339236037|ref|XP_003379573.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
gi|316977756|gb|EFV60819.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
Length = 502
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 212/316 (67%), Gaps = 27/316 (8%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPP+HPL KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+Y CRE R+C+IDK
Sbjct: 161 YPPSHPLALPKHVCNICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRESRHCVIDK 220
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERDSN-EVESTSGTLIEMPVERILEAE 162
RQRNRCQYCRYQKCL MGMKREAVQEERQR + +R N E ESTS + ++P +R+LEAE
Sbjct: 221 RQRNRCQYCRYQKCLIMGMKREAVQEERQRLRGDRSENGEPESTSNCISDIPPDRVLEAE 280
Query: 163 QRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
D QD V D QLV WA+ IPH+ L +EDQ LLL+ GW
Sbjct: 281 LMADKILLGVPQDTV------------DAYFVQLVRWARMIPHYCELSIEDQALLLKNGW 328
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRS-------------SAHEAGVGGIFDRVLTE 269
NEL++A ++ S K + T + S+ + IFDR++ E
Sbjct: 329 NELILALMAYHSTHTKSMEMCMSSSTTTTTAAADSTTSVNSLESSEDNNYDVIFDRMIHE 388
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
L K++++++D+TELG LRTI+LFNPD+ GLK VVE REK Y LEEY R + +P
Sbjct: 389 LTYKLKDLQVDRTELGLLRTIVLFNPDITGLKCGTVVESYREKAYNCLEEYCRQKNPNQP 448
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKL+LRLPSLRSI
Sbjct: 449 GRFAKLMLRLPSLRSI 464
>gi|194768727|ref|XP_001966463.1| GF21986 [Drosophila ananassae]
gi|190617227|gb|EDV32751.1| GF21986 [Drosophila ananassae]
Length = 512
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/382 (46%), Positives = 231/382 (60%), Gaps = 79/382 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 93 YPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 152
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI------------- 151
RQRNRCQYCRYQKCL GMKREAVQEERQR + + G
Sbjct: 153 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNSAGRLSVGGGGGGGTPGSLGSSSLGG 212
Query: 152 ------------------------EMPVERILEAEQRVD----------MKQEPADQDIV 177
+ +ER+++AEQR + ++ P
Sbjct: 213 GGNGGGLGGTGNGSDDFMANNVSRDFTIERLMDAEQRAEAHCGDRALSFLRVGPNSTVQP 272
Query: 178 NEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA-------- 228
+ + A + +C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+AGWNELLIA
Sbjct: 273 DYKGAVSALCQVVNKQLYQMVEYARMMPHFAQLPLDDQVILLKAGWNELLIANVAWCSIV 332
Query: 229 ----------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDR 265
SF RS ++ + L + +R+SA +AGV IFDR
Sbjct: 333 SLDDTMGGGGGGGGGGGLSHDSSFDRRSPVLQPQQLFLNQSFSYHRNSAIKAGVSTIFDR 392
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+L+EL KM+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R H
Sbjct: 393 ILSELSVKMKRLNLDRRELTCLKAIILYNPDIRGIKNRSEIEMCREKVYACLDEHCRQEH 452
Query: 326 SEEPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 453 PGDDGRFAQLLLRLPALRSISL 474
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 225/358 (62%), Gaps = 58/358 (16%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQR
Sbjct: 80 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQR 139
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQ-----------------------RTKERDSNEVE 144
NRCQYCRYQKCL GMKREAVQEERQ E
Sbjct: 140 NRCQYCRYQKCLACGMKREAVQEERQRGTRAANARAAGAGGGGGGGGGVSNVVGAGGEDF 199
Query: 145 STSGTLIEMPVERILEAEQRVDMKQ--------EPADQDIVNEQ---QATNICKATDKQL 193
S +L ++ +ERI+EAEQ+ + + +V +++C+ +KQL
Sbjct: 200 KPSSSLRDLTIERIIEAEQKAESLSGDNVLPFLRVGNNSMVQHDYKGAVSHLCQMVNKQL 259
Query: 194 FQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGV------ 247
+Q+V++A+ PHFT L EDQ+LLL+AGWNELLIA+ + SI D +PG
Sbjct: 260 YQMVEYARRTPHFTHLQREDQILLLKAGWNELLIANVAWCSIESLDAEYASPGTVHDGSF 319
Query: 248 ------------------TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+ +R+SA +A V IFDR+L+EL KM+ + +D++EL CL+
Sbjct: 320 GRRSPVRQPQQLFLNQNFSYHRNSAIKANVVSIFDRILSELSIKMKRLNIDRSELSCLKA 379
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
IILFNPD+RGLK + VE+ REK+Y L+E+ R H + GRFA+LLLRLP+LRSI +
Sbjct: 380 IILFNPDIRGLKCRADVEVCREKIYACLDEHCRTEHPGDDGRFAQLLLRLPALRSISL 437
>gi|309320759|gb|ADO64596.1| ultraspiracle [Spodoptera littoralis]
Length = 467
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 231/354 (65%), Gaps = 32/354 (9%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 63 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 121
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 122 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLPCGMKR 181
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 182 EAVQEERQRAARGAEDAHPSSSVQVQELSIERLLEMESLVADPTEEYQFLRVGPDSNVPP 241
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ +A +++C+ +KQ+ LV WA+ IPHF +L LEDQ+LL++ WNELL+ + + RS+
Sbjct: 242 KFRAPVSSLCQIGNKQIAALVVWARDIPHFNSLHLEDQMLLIKGSWNELLLFAIAWRSME 301
Query: 236 -----------------SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
S + L PG+T++R+SA +AGVG IFDRVL+EL KMR ++
Sbjct: 302 YLTEEREVVDSSGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRALR 361
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
+D E L+ IIL NPDV+GL ++ VE+LREK+++ L+EY R + E GRF
Sbjct: 362 VDHAEYVALKAIILLNPDVKGLNNRLEVEILREKMFSCLDEYVRRSRGGEEGRF 415
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/271 (63%), Positives = 197/271 (72%), Gaps = 26/271 (9%)
Query: 16 GANSMSSFGSNNHSS------SHNNGSSNSSIISP------------YPPNHPLCGSKHL 57
G +SM+S G S SH N S+S I P P PL +KH+
Sbjct: 71 GPHSMASPGVGYGPSISPQLNSHMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHI 130
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQK
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQK 190
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE------- 170
CL MGMKREAVQEERQR KER NEVESTS +MPVE+ILEAE V+ K E
Sbjct: 191 CLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILEAELAVEPKTETYIETNV 250
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
P + N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 251 PMPSNSPND-PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 309
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
SHRSI+VKDGILLA G+ V+R+SAH AGVG
Sbjct: 310 SHRSIAVKDGILLATGLHVHRNSAHSAGVGA 340
>gi|409178671|gb|AFV25501.1| ultraspiracle, partial [Drosophila hydei]
Length = 443
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 228/361 (63%), Gaps = 64/361 (17%)
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRN 108
HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRN
Sbjct: 57 HPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN 116
Query: 109 RCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVE---------------------STS 147
RCQYCRYQKCL GMKREAVQEERQR + + S S
Sbjct: 117 RCQYCRYQKCLTCGMKREAVQEERQRGARASTGRLSVGGGATGSGIGVGGGPGSGANSAS 176
Query: 148 GTLI------EMPVERILEAEQRVDMKQEPADQDIVNEQQATN-------------ICKA 188
+ +ER+L+AEQR + + D+ + + N +C+
Sbjct: 177 DDFKPNSVSRDFTIERLLDAEQRAEA--QSGDRALAFLRVGPNSTVQPDYKGAVSALCQV 234
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD--------- 239
+KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI D
Sbjct: 235 VNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIESLDEAIAGVGHD 294
Query: 240 -------------GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ L+ + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL C
Sbjct: 295 SGFERRSPVMQPQQLFLSQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELSC 354
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346
L+ IIL+N D+RG+K+++ +E+ REKVY L+E+ R+ H + GRFA+LLLRLP+LRSI
Sbjct: 355 LKAIILYNSDIRGIKNREDIELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSIS 414
Query: 347 V 347
+
Sbjct: 415 L 415
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/247 (68%), Positives = 195/247 (78%), Gaps = 11/247 (4%)
Query: 110 CQYCRYQKCLNMGMKRE-----AVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
CQYCRYQKCL MGMKRE AVQEERQR KER+ NEVESTS +MPVE+ILEAEQ
Sbjct: 1 CQYCRYQKCLAMGMKREVLLHAAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQA 60
Query: 165 VDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
V+ K E + + TNIC+A DKQLF LV+WA+ IPHF+ LPL+DQV+LL
Sbjct: 61 VEPKTETYIETNLGVPSNSPNDPVTNICQAADKQLFTLVEWAERIPHFSELPLDDQVILL 120
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
RAGWNELLIASFSHRSI++KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+
Sbjct: 121 RAGWNELLIASFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQ 180
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLR
Sbjct: 181 MDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLR 240
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 241 LPALRSI 247
>gi|1718061|sp|P54779.1|USP_MANSE RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|1304738|gb|AAB64234.1| MsUSP-1 protein [Manduca sexta]
Length = 461
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/312 (54%), Positives = 215/312 (68%), Gaps = 26/312 (8%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 100 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDK 159
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL GMKREAVQEERQR E S ++ E+ +ER+LE E
Sbjct: 160 RQRNRCQYCRYQKCLACGMKREAVQEERQRAAR--GTEDAHPSSSVQELSIERLLEIESL 217
Query: 165 VDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
V E + + + +A +++C+ +KQ+ LV WA+ IPHF L LEDQ+
Sbjct: 218 VADPPEEFQFLRVGPESGVPAKYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELEDQI 277
Query: 216 LLLRAGWNELLIASFSHRSI---------------SVKDGILLAPGVTVYRSSAHEAGVG 260
LL++ WNELL+ + + RS+ + + L PG+T++R+SA +AGVG
Sbjct: 278 LLIKNSWNELLLFAIAWRSMEYLTDERENVDSRSTAPPQLMCLMPGMTLHRNSALQAGVG 337
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
IFDRVL+EL KMR ++MD+ E L+ IIL NPDV+GLK++ V +LREK+++ L+EY
Sbjct: 338 QIFDRVLSELSLKMRTLRMDQAEYVALKAIILLNPDVKGLKNKPEVVVLREKMFSCLDEY 397
Query: 321 TRVNHSEEPGRF 332
R + E GRF
Sbjct: 398 VRRSRCAEEGRF 409
>gi|409178667|gb|AFV25499.1| ultraspiracle, partial [Zaprionus tuberculatus]
Length = 461
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 177/373 (47%), Positives = 234/373 (62%), Gaps = 75/373 (20%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQR
Sbjct: 63 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQR 122
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIE--------------- 152
NRCQYCRYQKCL+ GMKREAVQEERQR + + + +G
Sbjct: 123 NRCQYCRYQKCLSCGMKREAVQEERQRGARASTGRLNAGAGGNASGGVGVGGANSGGGVG 182
Query: 153 ---------------MP--------VERILEAEQRVDMKQEPADQDIVN----------- 178
MP +ER+++AEQR + D+ +++
Sbjct: 183 AGSGIGGTGSSSDDFMPNNVSRDFTIERLMDAEQRAEANS--GDRALLSLCVGPQSTVQS 240
Query: 179 --EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI- 235
+ + +C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI
Sbjct: 241 DYKGAVSALCQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIV 300
Query: 236 SVKDG---------------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
S+ D + L + +R+SA +AGV IFDR+L+EL KM
Sbjct: 301 SLDDALSGIGHDSAFERRSPVLQPQQLFLNQSFSYHRNSALKAGVHTIFDRILSELSVKM 360
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+ + +D+ EL CL+ IIL+NPD+RG+K++ +EM REKVY L+E+ R+ H + GRFA+
Sbjct: 361 KCLNLDRRELSCLKAIILYNPDIRGIKNRADIEMCREKVYACLDEHCRLEHPGDDGRFAQ 420
Query: 335 LLLRLPSLRSIEV 347
LLLRLP+LRSI +
Sbjct: 421 LLLRLPALRSISL 433
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/247 (68%), Positives = 193/247 (78%), Gaps = 11/247 (4%)
Query: 110 CQYCRYQKCLNMGMKRE-----AVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
CQYCRYQKCL MGMKRE AVQEERQR K+R+ NEVESTS +MPVE+ILEAEQ
Sbjct: 1 CQYCRYQKCLAMGMKREVLLHAAVQEERQRAKDRNENEVESTSCANEDMPVEKILEAEQA 60
Query: 165 VDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV LL
Sbjct: 61 VEPKTETYIETNLGVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELQLDDQVTLL 120
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
RAGWNELLIASFSHRSI++KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+
Sbjct: 121 RAGWNELLIASFSHRSIAIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQ 180
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLR
Sbjct: 181 MDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLR 240
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 241 LPALRSI 247
>gi|195130249|ref|XP_002009565.1| GI15428 [Drosophila mojavensis]
gi|193908015|gb|EDW06882.1| GI15428 [Drosophila mojavensis]
Length = 484
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 174/369 (47%), Positives = 228/369 (61%), Gaps = 70/369 (18%)
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRN 108
HPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRN
Sbjct: 78 HPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRN 137
Query: 109 RCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIE---------------- 152
RCQYCRYQKCL GMKREAVQEERQR + +
Sbjct: 138 RCQYCRYQKCLTCGMKREAVQEERQRGARASTGRLSGGGAAGGGGAGSGSGVGIGVGGGG 197
Query: 153 -------------MP--------VERILEAEQRVD----------MKQEPADQDIVNEQQ 181
MP ++R+L+AEQR + ++ P + +
Sbjct: 198 GAGSGANSASDDFMPNSVSRDFTIDRLLDAEQRAEALSGDNALAFLRVGPNSTVQPDYKG 257
Query: 182 ATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD- 239
A + +C+ +KQL+Q+V++A+ +PHF LPL+DQV+LL+A WNELLIA+ + SI D
Sbjct: 258 AVSALCQVVNKQLYQMVEYARLMPHFAQLPLDDQVILLKAAWNELLIANVAWCSIESLDE 317
Query: 240 ---------------------GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
+ L+ + +R+SA +AGV IFDR+L+EL KM+ +
Sbjct: 318 AIAGVGHDSAFDRRSPVLQPQQLFLSQSFSYHRNSAIKAGVQAIFDRILSELSVKMKRLN 377
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
+D+ EL CL+ IIL+NPD+RG+K+++ +E REKVY L+E+ R+ H + GRFA+LLLR
Sbjct: 378 LDRRELSCLKAIILYNPDIRGIKNREDIEHCREKVYACLDEHCRLEHPGDDGRFAQLLLR 437
Query: 339 LPSLRSIEV 347
LP+LRSI +
Sbjct: 438 LPALRSISL 446
>gi|112984304|ref|NP_001037470.1| protein ultraspiracle homolog [Bombyx mori]
gi|1345734|sp|P49700.1|USP_BOMMO RecName: Full=Protein ultraspiracle homolog; AltName: Full=BmCF1;
AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=RXR type hormone receptor CF1
gi|456395|gb|AAC13750.1| RXR type hormone receptor [Bombyx mori]
Length = 462
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/309 (53%), Positives = 211/309 (68%), Gaps = 26/309 (8%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE +NCIIDKRQR
Sbjct: 104 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDKNCIIDKRQR 163
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
NRCQYCRYQKCL GMKREAVQEERQR R E S ++ E+ +ER+LE E V
Sbjct: 164 NRCQYCRYQKCLACGMKREAVQEERQRAARR--TEDAHPSSSVQELSIERLLELEALVAD 221
Query: 168 KQEPADQDIVNEQQA---------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E V + +++C+ +KQ+ L+ WA+ IPHF L ++DQ+LL+
Sbjct: 222 SAEELQILRVGPESGVPAKYRAPVSSLCQIGNKQIAALIVWARDIPHFGQLEIDDQILLI 281
Query: 219 RAGWNELLIASFSHRSISVKDG---------------ILLAPGVTVYRSSAHEAGVGGIF 263
+ WNELL+ + + RS+ + I L PG+T++R+SA +AGVG IF
Sbjct: 282 KGSWNELLLFAIAWRSMEFLNDERENVDSRNTAPPQLICLMPGMTLHRNSALQAGVGQIF 341
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVL+EL KMR ++MD+ E L+ IIL NPDV+GLK++Q V++LREK++ L+EY R
Sbjct: 342 DRVLSELSLKMRSLRMDQAECVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRR 401
Query: 324 NHSEEPGRF 332
+ E GRF
Sbjct: 402 SRGGEEGRF 410
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 164/270 (60%), Positives = 187/270 (69%), Gaps = 50/270 (18%)
Query: 76 EGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135
EGCKGFFKRTVRKDL+Y CR+ + CI+DKRQRNRCQYCRYQKCLN GMKRE +
Sbjct: 1 EGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQKCLNTGMKREXPND----- 55
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
PV TNIC+A DKQLF
Sbjct: 56 ------------------PV---------------------------TNICQAADKQLFT 70
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+W+K +PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI V DGILL G+ V+RSSAH
Sbjct: 71 LVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGILLTTGLHVHRSSAH 130
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
AGVG IFDRVLTELVSKMR+M MDK ELGCLR I+LFNPD +GL S VE L+EKVY
Sbjct: 131 SAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPSDVEALQEKVYA 190
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 191 SLESYCKQKYPDQPGRFAKLLLRLPALRSI 220
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 168/244 (68%), Positives = 190/244 (77%), Gaps = 19/244 (7%)
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-- 170
CRYQKCL MGMKREAVQEERQR K+RD EVESTS EMPVE+ILEAE V+ K E
Sbjct: 2 CRYQKCLAMGMKREAVQEERQRNKDRD-GEVESTSAVNEEMPVEKILEAEMAVEQKTELH 60
Query: 171 ---------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
P D TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAG
Sbjct: 61 ADGSSGGSSPNDP-------VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAG 113
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 114 WNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDK 173
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LRE+VY SLE Y + + ++ GRFAKLLLRLP+
Sbjct: 174 TELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPA 233
Query: 342 LRSI 345
LRSI
Sbjct: 234 LRSI 237
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 323 bits (828), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/231 (67%), Positives = 191/231 (82%), Gaps = 4/231 (1%)
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
Y+ + G KREAVQEERQR KE+ NEVESTS + +MP+ERILEAE RV EP ++
Sbjct: 3 YKDDDDKGPKREAVQEERQRNKEKSENEVESTSNSQNDMPIERILEAELRV----EPKNE 58
Query: 175 DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
DI + ++IC+A D+QL+QL++WAKHIPHFT LP+EDQV+LL++GWNELLIA FSHRS
Sbjct: 59 DIDSRDPVSDICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRS 118
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
+SVKDGI+LA G+ V+R+ AH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I+LFN
Sbjct: 119 MSVKDGIMLATGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFN 178
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
P+ +GLKS Q VE LREKVY LEEY R + ++ GRFAKLLLRLP+LRSI
Sbjct: 179 PEAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSI 229
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 187/222 (84%), Gaps = 4/222 (1%)
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT 183
KREAVQEERQR KE+ NEVESTS + +MP+ERILEAE RV EP ++DI + +
Sbjct: 1 KREAVQEERQRNKEKSENEVESTSNSQNDMPIERILEAELRV----EPKNEDIDSRDPVS 56
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
+IC+A D+QL+QL++WAKHIPHFT LP+EDQV+LL++GWNELLIA FSHRS+SVKDGI+L
Sbjct: 57 DICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIML 116
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
A G+ V+R+ AH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I+LFNP+ +GLKS
Sbjct: 117 ATGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKST 176
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Q VE LREKVY LEEY R + ++ GRFAKLLLRLP+LRSI
Sbjct: 177 QQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSI 218
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 208/307 (67%), Gaps = 26/307 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+C +CGDRASGKHYG+YSCEGCKGFFKRTVRK+LSY+CR+ ++C+IDKRQRNRCQ+C
Sbjct: 98 SKHVCKVCGDRASGKHYGLYSCEGCKGFFKRTVRKELSYSCRDNKHCVIDKRQRNRCQFC 157
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI---------------EMPVERI 158
RYQKCL MGMKREAVQ E + + E E+ + + EMP+E+I
Sbjct: 158 RYQKCLTMGMKREAVQGEISKDASKMMMEYENGGESSMLSRNMSSENGGHPFDEMPIEQI 217
Query: 159 LEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
+AE +D + + Q N + L L++W K IP F TL +D+V L+
Sbjct: 218 RDAENELDR--------LYQQNQGVNY---VTEYLRALIEWTKMIPQFETLKTDDRVYLV 266
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ WNE+ IA +HRS+ +D +L+ + R A V IF RV+TELV KM+EMK
Sbjct: 267 QSAWNEITIADIAHRSMEFEDKLLIGKNEILTRGQATSTNVDIIFGRVITELVYKMKEMK 326
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
+D+TELGCL+ IIL+NPDV+ L+ +VE LREKVY +LE Y++ + E+PGRFAKLLLR
Sbjct: 327 LDRTELGCLKAIILYNPDVKQLQDPILVEDLREKVYATLEAYSKQKYPEQPGRFAKLLLR 386
Query: 339 LPSLRSI 345
LP+LRSI
Sbjct: 387 LPALRSI 393
>gi|357621270|gb|EHJ73160.1| ultraspiracle-like protein [Danaus plexippus]
Length = 423
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 174/367 (47%), Positives = 224/367 (61%), Gaps = 77/367 (20%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L +++ S + YPPNHPL GSKHLCSI
Sbjct: 80 MKPDTAML---------------------DGMREDATSPSAMRNYPPNHPLSGSKHLCSI 118
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 119 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLA 178
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------AD 173
GMKREAVQEERQR R + +V +S ++ E+ +ER+LE E V E D
Sbjct: 179 CGMKREAVQEERQRAA-RGAEDVHPSS-SVQELSIERLLEMESLVADPNEEFQFLRVGPD 236
Query: 174 QDIVNEQQA--TNICKAT-----------------------------DKQLFQLVDWAKH 202
++ +A +++C+ +KQ+ LV WA+
Sbjct: 237 SNVPPRYRAPVSSLCQIAFHGITVRGPGPSRCGERSFNSAWDLRPRCNKQIAALVVWARD 296
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-------KDG---------ILLAPG 246
IPHF+ L LEDQV+L++A WNEL++ + + RS+ DG + L PG
Sbjct: 297 IPHFSQLELEDQVILIKASWNELMLFAIAWRSMEYLEDERENLDGTRTAPPPQLMCLMPG 356
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+T++R+SA +AGVG IFDRVL+EL KMR ++MD+ E L+ I+L NPD++GLK++Q V
Sbjct: 357 MTLHRNSALQAGVGQIFDRVLSELSLKMRALRMDQAEYVALKAIVLLNPDIKGLKNRQDV 416
Query: 307 EMLREKV 313
++LREKV
Sbjct: 417 DVLREKV 423
>gi|341869840|gb|AEK99013.1| FLAGNvUSPDE [synthetic construct]
Length = 264
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 156/210 (74%), Positives = 173/210 (82%), Gaps = 4/210 (1%)
Query: 125 REAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN 184
REAVQEERQRTKERD NEVESTS +MPVERILEAE+RVD K EP +V + A
Sbjct: 12 REAVQEERQRTKERDQNEVESTSSFHTDMPVERILEAERRVDFKVEP----MVEYENANT 67
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ +ATDKQL QLV+WAK IPHFT+LP+EDQVLLLRAGWNELLIA FSHRSI VK+ I+L
Sbjct: 68 LFQATDKQLVQLVEWAKQIPHFTSLPIEDQVLLLRAGWNELLIAGFSHRSIGVKEKIVLG 127
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
GVTV R++AH+AGV IFDR LTELVSKMREMKMDK ELGCLRTIIL+NP+VRGL+S
Sbjct: 128 SGVTVCRNTAHQAGVDTIFDRALTELVSKMREMKMDKAELGCLRTIILYNPEVRGLRSVG 187
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
VE LREKVY SLEEYTR H EEPGRFAK
Sbjct: 188 EVEALREKVYASLEEYTRSTHPEEPGRFAK 217
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/228 (68%), Positives = 181/228 (79%), Gaps = 6/228 (2%)
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----- 178
KREAVQEERQR K+R+ NEVESTS +MPVERILEAE V+ K E + +
Sbjct: 21 KREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSS 80
Query: 179 -EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+V
Sbjct: 81 PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 140
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 141 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDS 200
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 201 KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 248
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/258 (63%), Positives = 186/258 (72%), Gaps = 26/258 (10%)
Query: 114 RYQKCLNMGMKRE------------AVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
RY KCL MGMKRE AVQEERQR KE+ EVESTS ++MPVERILEA
Sbjct: 1 RYMKCLAMGMKREDVSRQGKERDYKAVQEERQRVKEKGEGEVESTSSANVDMPVERILEA 60
Query: 162 EQRVDMKQE-----------PADQDIVNEQQ---ATNICKATDKQLFQLVDWAKHIPHFT 207
E V+ K E P + N ++ TNI +A ++QLF LV+WAK IPHFT
Sbjct: 61 ELAVEPKLETYIDTQVSHDCPTIEKEANSEEKDPVTNIFQAAEEQLFTLVEWAKRIPHFT 120
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
L L+DQV LLRAGWNELLIA FSHRSI VKDGILLA G+ V+RSSAH AGV IFDRVL
Sbjct: 121 KLSLDDQVTLLRAGWNELLIAGFSHRSIPVKDGILLATGIHVHRSSAHHAGVDTIFDRVL 180
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+ELV+KMREMKMDK+ELGCLR I+LFNPD +GL S Q VE LREKVY +LEEY + + E
Sbjct: 181 SELVAKMREMKMDKSELGCLRAIVLFNPDAKGLVSTQEVESLREKVYATLEEYCKCQYPE 240
Query: 328 EPGRFAKLLLRLPSLRSI 345
E GRFAKLLLRLP+LRSI
Sbjct: 241 ETGRFAKLLLRLPALRSI 258
>gi|226442013|gb|ACO57596.1| retinoid X receptor alpha, partial [Gillichthys seta]
Length = 221
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/222 (68%), Positives = 180/222 (81%), Gaps = 5/222 (2%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ----DIV 177
GMKREAVQEERQR KER +EVESTS EMPV++IL+AE V+ K EP + +
Sbjct: 1 GMKREAVQEERQRGKERGDSEVESTSCFNEEMPVDKILDAELAVEPKTEPYSEGGSGNST 60
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++V
Sbjct: 61 NDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTV 119
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD
Sbjct: 120 KDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDA 179
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
+GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRL
Sbjct: 180 KGLSNPSEVEALREKVYASLESYTKQKYPDQPGRFAKLLLRL 221
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/252 (63%), Positives = 187/252 (74%), Gaps = 15/252 (5%)
Query: 109 RCQYCRYQKC---------LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL 159
RCQY Q L G++ AVQEERQR K+R+ NEVESTS +MPVERIL
Sbjct: 33 RCQYPSAQMLAEICVCGGFLPRGLRSVAVQEERQRGKDRNENEVESTSSANEDMPVERIL 92
Query: 160 EAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
EAE V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+D
Sbjct: 93 EAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDD 152
Query: 214 QVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
QV+LLRAGWNELLIASFS+RSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSK
Sbjct: 153 QVILLRAGWNELLIASFSNRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK 212
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFA
Sbjct: 213 MRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA 272
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 273 KLLLRLPALRSI 284
>gi|226442011|gb|ACO57595.1| retinoid X receptor alpha, partial [Gillichthys mirabilis]
Length = 221
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 152/222 (68%), Positives = 179/222 (80%), Gaps = 5/222 (2%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ----DIV 177
GM REAVQEERQR KER +EVESTS EMPV++IL+AE V+ K EP + +
Sbjct: 1 GMXREAVQEERQRGKERGDSEVESTSCFNEEMPVDKILDAELAVEPKTEPYSEGGSGNST 60
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++V
Sbjct: 61 NDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTV 119
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD
Sbjct: 120 KDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDA 179
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
+GL + VE LREKVY SLE YT+ + ++PGRFAKLLLRL
Sbjct: 180 KGLSNPSEVEALREKVYASLESYTKQKYPDQPGRFAKLLLRL 221
>gi|28628008|gb|AAO18152.1| USP-RXR [Folsomia candida]
Length = 221
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/225 (64%), Positives = 185/225 (82%), Gaps = 8/225 (3%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKD SYACRE ++C IDKR RNRCQYCRYQKCL+MGMKREAVQEERQ
Sbjct: 1 CEGCKGFFKRTVRKDPSYACREDKSCTIDKRHRNRCQYCRYQKCLSMGMKREAVQEERQM 60
Query: 135 TKERDS-NEVESTSGTL-IEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATD 190
TKER +EVESTS T ++MP+ERI++AE++ ++++ P IV+ + ++IC+A D
Sbjct: 61 TKERSGESEVESTSTTTPMDMPLERIVDAERQCELRERP----IVDTETLGMSDICQAAD 116
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
KQLFQLV+WAK +PHF L L D+V+LL +GWNELLI F+HRS+ VK+ ++LA G+TVY
Sbjct: 117 KQLFQLVEWAKIVPHFNELSLSDRVILLSSGWNELLILGFAHRSMEVKEALVLANGLTVY 176
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
R+SAH+AG+ IFDRVL+E+V KMR+MK+D+ ELGCL+ IIL NP
Sbjct: 177 RTSAHQAGLVHIFDRVLSEIVGKMRDMKVDRAELGCLKAIILLNP 221
>gi|409194682|gb|AFV31631.1| retinoid X receptor alpha, partial [Acanthopagrus schlegelii]
Length = 196
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 142/196 (72%), Positives = 164/196 (83%), Gaps = 6/196 (3%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCR
Sbjct: 1 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCR 60
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
YQKCL MGMKREAVQEERQR K+R+ NEVESTS +MPVE+ILEAEQ V+ K E +
Sbjct: 61 YQKCLAMGMKREAVQEERQRAKDRNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIE 120
Query: 175 DIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIA
Sbjct: 121 TNLGVPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA 180
Query: 229 SFSHRSISVKDGILLA 244
SFSHRSI++KDGILLA
Sbjct: 181 SFSHRSIAIKDGILLA 196
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/223 (67%), Positives = 178/223 (79%), Gaps = 6/223 (2%)
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQA 182
QEERQR KE++ NEVESTS +MPVE+ILEAE+ V+ K E + ++
Sbjct: 1 QEERQRAKEKNENEVESTSCVNEDMPVEKILEAEEAVEPKTETYIETNLSVPSNSPNDPV 60
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGIL
Sbjct: 61 TNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGIL 120
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
LA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 121 LATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN 180
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 PGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 223
>gi|365784340|dbj|BAL42859.1| ultraspiracle-like protein, partial [Megoura crassicauda]
Length = 203
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/205 (72%), Positives = 166/205 (80%), Gaps = 8/205 (3%)
Query: 79 KGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER 138
KGFFKRTVRK+LSYACRE CIIDKRQRNRCQYCRYQKCL MGMKREAVQEERQRTKER
Sbjct: 1 KGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKER 60
Query: 139 DSN--EVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN----ICKATDKQ 192
D N EVE TS + +MPVE IL AE + D + +Q + +Q + IC+ATDKQ
Sbjct: 61 DHNSIEVEPTSSSNTDMPVELILRAENKADAIK--TEQQYIEQQHPQHTVGAICQATDKQ 118
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
L QLV+WAKHIPHF LPL DQVLLLRAGWNEL+IA+FSHRSISVKDGI+LA G+TV R
Sbjct: 119 LIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLATGLTVDRD 178
Query: 253 SAHEAGVGGIFDRVLTELVSKMREM 277
SAH+AGV IFDRVLTELV+KMR+M
Sbjct: 179 SAHQAGVEAIFDRVLTELVAKMRDM 203
>gi|146400035|gb|ABQ28715.1| RXR receptor [Brugia malayi]
Length = 465
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 206/312 (66%), Gaps = 26/312 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL Y CRE RNCIIDKRQRNRCQYC
Sbjct: 128 TKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLIYLCRENRNCIIDKRQRNRCQYC 187
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSN---------------EVESTS---GTLIEMPV 155
RY+KC +MGMKREAVQEERQ ++ + E ESTS G E+ +
Sbjct: 188 RYRKCQSMGMKREAVQEERQSSRTDLTKVLTSGGQRHITTSQMEAESTSTYGGP--EIQL 245
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
ERI AE+ E +I E N C++ + Q+ ++V+WA +P F + +EDQ
Sbjct: 246 ERIAAAEE----ASEVLFSNIKIESSDVNSCESLEWQMIRMVEWALMLPSFNEILVEDQA 301
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
L+R GW+EL++A ++RS K +LL P + R+ A G IFDR++ EL +M+
Sbjct: 302 RLIRFGWHELILADIAYRSTINK--LLLWPERVMERNDAEILGCRIIFDRIINELTIRMK 359
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
++ +D+ E+ LR IL+NP V GL++ V+E LR+KV LE+Y R +H + RFAKL
Sbjct: 360 DLNVDRMEIAALRCAILYNPSVSGLQNVSVIESLRDKVMVCLEDYCRQHHPTQTQRFAKL 419
Query: 336 LLRLPSLRSIEV 347
LLR+P+LRS+ +
Sbjct: 420 LLRMPALRSLSL 431
>gi|112820307|gb|ABI24015.1| Rxr2 [Oikopleura dioica]
Length = 300
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/296 (50%), Positives = 197/296 (66%), Gaps = 26/296 (8%)
Query: 65 ASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124
ASGKHYG+YSCEGCKGFFKRTVRK+LSY+CR+ ++C+IDKRQRNR Q+CRYQKCL MGMK
Sbjct: 1 ASGKHYGLYSCEGCKGFFKRTVRKELSYSCRDNKHCVIDKRQRNRYQFCRYQKCLTMGMK 60
Query: 125 REAVQEERQRTKERD-------------SNEVESTSG--TLIEMPVERILEAEQRVDMKQ 169
REAVQ E + + S + S +G EMP+E+I +AE +D
Sbjct: 61 REAVQGEISKDASKMMMDYENGGESSMLSRNISSENGGHPFDEMPIEQIRDAENELDR-- 118
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
+ + Q N + L L++W K IP F TL +D+V L+++ WNE+ IA
Sbjct: 119 ------LYQQNQGVNY---VTEYLRALIEWTKMIPQFETLKTDDRVYLVQSAWNEITIAD 169
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+HRS+ +D +L+ + R A V IF RV+TELV KM+EMK+D+TELGCL+
Sbjct: 170 IAHRSMEFEDKLLIGKNEILTRGQATSTNVDIIFGRVITELVYKMKEMKLDRTELGCLKA 229
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
IIL+NPDV+ L+ +VE LREKVY SLE Y++ + E+PGRFAKLLLRLP+LRSI
Sbjct: 230 IILYNPDVKQLQDPILVEDLREKVYASLEAYSKQKYPEQPGRFAKLLLRLPALRSI 285
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 198/302 (65%), Gaps = 18/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CS+C D+A KHYGV++CEGCKGFFKR+VR + Y+C R+C DK+ RNRCQYCR+QK
Sbjct: 106 CSVCSDKAYVKHYGVFACEGCKGFFKRSVRNNRKYSCLGKRHCDTDKKSRNRCQYCRFQK 165
Query: 118 CLNMGMKREAVQEERQRTKERD------------SNEVESTSGTLIEMPVERILEAEQRV 165
C+ +GMK EAVQ+E + + +D EV S+ L +P+E I+ AE V
Sbjct: 166 CVQVGMKPEAVQDETLKKERKDYRKRLPSTPKGSPAEVTSSKVDLPMIPIESIIAAETLV 225
Query: 166 DMKQEPADQDIV--NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
D P Q N ++C A DKQL L +WAK +PHF L + DQV+LL+ W
Sbjct: 226 D----PGIQTFASANTDPIRHVCLAADKQLASLAEWAKRLPHFRDLSIADQVVLLQWSWP 281
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
ELLI F HRS +VKDGILL+ G+ + R + +AGVG I D++ +E++ KM+E++MD+ E
Sbjct: 282 ELLIGGFCHRSCAVKDGILLSTGLHLTRDNLKKAGVGAIIDKIFSEVIEKMQEIQMDRAE 341
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
GCLR I+LF+PD +GL + VE RE ++LE++ + H E+P RF K++LR+P+L+
Sbjct: 342 WGCLRAIMLFSPDAKGLTAIDQVENYRELYTSTLEDHVKRKHPEQPDRFTKVILRIPALK 401
Query: 344 SI 345
SI
Sbjct: 402 SI 403
>gi|124431283|gb|ABN11290.1| ultraspiracle protein [Myzus persicae]
Length = 267
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/220 (67%), Positives = 174/220 (79%), Gaps = 8/220 (3%)
Query: 121 MGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN 178
MGMKREAVQEERQRTKERD N EVE TS + +MPVE IL AE + D + +Q +
Sbjct: 1 MGMKREAVQEERQRTKERDHNNIEVEPTSSSNTDMPVELILRAENKADAIK--TEQQYIE 58
Query: 179 EQQATN----ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
++ + IC+ATDKQL QLV+WAKHIPHF LPL DQVLLLRAGWNEL+IA+FSHRS
Sbjct: 59 QRHPQHTVGAICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRS 118
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
ISVKDGI+LA G+TV R SAH+AGV IFDRVLTELV+KMR+M MD+TELGCLRTIILFN
Sbjct: 119 ISVKDGIVLATGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFN 178
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
P +GL+S V++LR+KVY +LEEY R H EEPGRFAK
Sbjct: 179 PGSKGLQSVNEVQVLRDKVYVALEEYCRTTHPEEPGRFAK 218
>gi|33318315|gb|AAQ05028.1| RXR gamma [Scophthalmus maximus]
Length = 198
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 142/198 (71%), Positives = 163/198 (82%), Gaps = 3/198 (1%)
Query: 76 EGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135
EGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR
Sbjct: 1 EGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 60
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQ 192
KER +EVESTS +MPV++IL+AE V+ K E +D N TNIC+A DKQ
Sbjct: 61 KERGESEVESTSSFNEDMPVDKILDAEVAVEPKTETYSDGSPGNSTNDPVTNICQAADKQ 120
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
LF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGILLA G+ V+RS
Sbjct: 121 LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRS 180
Query: 253 SAHEAGVGGIFDRVLTEL 270
SAH AGVG IFDRVL+EL
Sbjct: 181 SAHSAGVGSIFDRVLSEL 198
>gi|378925274|dbj|BAL63405.1| retinoic X receptor gamma, partial [Solea senegalensis]
Length = 217
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/218 (66%), Positives = 171/218 (78%), Gaps = 9/218 (4%)
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE------PADQDIVNE 179
EAVQEERQR +ER NEVESTS +MPV++IL+AE V+ K E P +
Sbjct: 1 EAVQEERQRGRERGENEVESTSSFNEDMPVDKILDAELAVEPKTETYSEGSPGNS---TN 57
Query: 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD 239
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKD
Sbjct: 58 DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKD 117
Query: 240 GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
GILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDKTELGCLR I+LFNPD +G
Sbjct: 118 GILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKG 177
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
L + VE LREKVY SLE YT+ + ++PGRFAKLLL
Sbjct: 178 LSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLL 215
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 198/303 (65%), Gaps = 32/303 (10%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKDLSYACRE + C+IDKRQRNRCQYCRYQKCL GMKREAVQEERQR
Sbjct: 1 CEGCKGFFKRTVRKDLSYACREEKACLIDKRQRNRCQYCRYQKCLACGMKREAVQEERQR 60
Query: 135 TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQA---------TNI 185
+ E S ++ E+ +ER++E E Q V+ +++
Sbjct: 61 AAK--GQEEAHPSSSVQELSIERLIEIESSPTESQSELQYLRVSPNSVVPTRYRGPVSSL 118
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG----- 240
C+ ++QL LVDWA+ +PHF L L DQVLLL++ WNELLI + + RSI +
Sbjct: 119 CQIGNRQLRALVDWARCLPHFNRLQLSDQVLLLKSSWNELLIIAIAWRSIEYLENEREND 178
Query: 241 ----------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+ L PG+T++R+SA AGVG +FDR+L+EL KMR+M++D+ EL
Sbjct: 179 NGNDKTNNKTIPTPQLMCLMPGMTLHRNSALLAGVGVMFDRILSELSLKMRQMRVDQAEL 238
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ +ILFNPD+RG+K +Q ++ +R+KVY LE++ R + E GRFA LLLRLP+LRS
Sbjct: 239 ACLKAVILFNPDLRGVKGRQEIDAIRDKVYALLEDHCRTRRAGEEGRFASLLLRLPALRS 298
Query: 345 IEV 347
I +
Sbjct: 299 ISL 301
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 144/215 (66%), Positives = 170/215 (79%), Gaps = 3/215 (1%)
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATD 190
R++ER +E E SG +MPVERILEAE V+ K E D ++ N TNIC A D
Sbjct: 1 RSRERAESEAECASGGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAAD 60
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
KQLF LV+WAK IPHF+ L LEDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+
Sbjct: 61 KQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH 120
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
RSSAH AGVG IFDRVLTELVSKM++M+MDK+ELGCLR I+LFNPD +GL + VE LR
Sbjct: 121 RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLR 180
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
EKVY +LE YT+ + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 EKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSI 215
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/196 (71%), Positives = 161/196 (82%), Gaps = 6/196 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTL 209
+MPVE+ILEAE VD P ++ Q+ TNIC+A DKQLF LV+WAK IPHFT L
Sbjct: 5 DMPVEQILEAELAVD----PKIDTYIDAQKDPVTNICQAADKQLFTLVEWAKRIPHFTEL 60
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269
PLEDQV+LLRAGWNELLIA FSHRSI KDGILLA G+ V+RSSAH+AGVG IFDRVLTE
Sbjct: 61 PLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTE 120
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV+KMR+MKMDKTELGCLR ++LFNPD +GL + Q VE LREKVY SLEEYT+ + EEP
Sbjct: 121 LVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEP 180
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKLLLRLP+LRSI
Sbjct: 181 GRFAKLLLRLPALRSI 196
>gi|19919404|gb|AAM08268.1|AF438229_1 nuclear receptor RXR [Dirofilaria immitis]
gi|19919406|gb|AAM08269.1|AF438230_1 nuclear receptor RXR [Dirofilaria immitis]
Length = 474
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/352 (45%), Positives = 218/352 (61%), Gaps = 41/352 (11%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
S +M+ + S S+S N G+ +KH+C+ICGDRASGKHYGVY
Sbjct: 101 SSTTPNMTLYASQKSSTSMNVGTI----------------TKHICAICGDRASGKHYGVY 144
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SCEGCKGFFKRTVRKDL Y CRE RNCIIDKRQRNRCQYCRY+KC +MGMKREAVQEERQ
Sbjct: 145 SCEGCKGFFKRTVRKDLIYLCRENRNCIIDKRQRNRCQYCRYRKCQSMGMKREAVQEERQ 204
Query: 134 RTKERDSN----------------EVESTS--GTLIEMPVERILEAEQRVDMKQEPADQD 175
++ + E ESTS G L E+ +ERI AE+ E +
Sbjct: 205 SSRADITKMLTSGGGQRHITTSQMEAESTSTYGGL-EIQLERIAAAEE----ASEALFSN 259
Query: 176 IVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
I E + ++ + Q+ ++V+WA +P F + +EDQ L+R GW+EL++A ++RS
Sbjct: 260 IKIESNDISSYESLEWQMIRMVEWALMLPSFNEILVEDQARLIRFGWHELILADIAYRST 319
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
K +LL P + R+ A G IFDR++ EL +++++ +D+ E+ LR IL+NP
Sbjct: 320 INK--LLLWPERVMERNDAEILGYRIIFDRIINELTVRLKDLDVDRMEIAALRCAILYNP 377
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
V GL++ VVE LR+KV LE+Y R +H + RFAKLLLR+P+LRS+ +
Sbjct: 378 SVSGLRNVSVVESLRDKVMVCLEDYCRQHHPAQTQRFAKLLLRMPALRSLSL 429
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/197 (69%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 152 EMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTT 208
+MPVERILEAE V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+
Sbjct: 11 DMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSD 70
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
L LEDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLT
Sbjct: 71 LTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLT 130
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELVSKM++M+MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+
Sbjct: 131 ELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQ 190
Query: 329 PGRFAKLLLRLPSLRSI 345
PGRFAKLLLRLP+LRSI
Sbjct: 191 PGRFAKLLLRLPALRSI 207
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 160/196 (81%), Gaps = 6/196 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNE--QQATNICKATDKQLFQLVDWAKHIPHFTTL 209
+MPVE+I EAE M EP D ++V + TNIC+A DKQL LV+WAK IPHF+ L
Sbjct: 1 DMPVEKIQEAE----MAVEPKDGNMVEQPNDPVTNICQAADKQLVTLVEWAKRIPHFSDL 56
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269
P++DQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLTE
Sbjct: 57 PIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTE 116
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV+KMR+MKMDKTELGCLR I+LFNPD +GL +VE LREKVY SLEEY + + E+P
Sbjct: 117 LVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPEQP 176
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKLLLRLP+LRSI
Sbjct: 177 GRFAKLLLRLPALRSI 192
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVERILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 5 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 64
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 65 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 124
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 125 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 184
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 185 YCKHKYPEQPGRFAKLLLRLPALRSI 210
>gi|12000389|gb|AAG21692.1| retinoid X receptor alpha [Neovison vison]
Length = 193
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/197 (68%), Positives = 157/197 (79%), Gaps = 14/197 (7%)
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R+ NEVESTS +M
Sbjct: 1 CRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDM 60
Query: 154 PVERILEAEQRVDMKQEPADQDIVNEQQA----------TNICKATDKQLFQLVDWAKHI 203
PVE+ILEAE V EP + V+ TNIC+A DKQLF LV+WAK +
Sbjct: 61 PVEKILEAELAV----EPRTETYVDANMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRV 116
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IF
Sbjct: 117 PHFSELPLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIF 176
Query: 264 DRVLTELVSKMREMKMD 280
DRVLTELVSKMR+M+MD
Sbjct: 177 DRVLTELVSKMRDMQMD 193
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 6 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 65
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 66 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 125
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 126 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 185
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 186 PEQPGRFAKLLLRLPALRSI 205
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVERILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 1 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 61 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSI 206
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 9 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 68
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 69 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 128
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 129 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 188
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 189 PEQPGRFAKLLLRLPALRSI 208
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 9 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 68
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 69 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 128
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 129 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 188
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 189 PEQPGRFAKLLLRLPALRSI 208
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 3 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 62
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 63 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 122
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 123 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 182
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 183 PEQPGRFAKLLLRLPALRSI 202
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 3 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 62
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 63 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 122
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 123 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 182
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 183 PEQPGRFAKLLLRLPALRSI 202
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 1 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 60
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 61 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 120
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 121 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 180
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 181 PEQPGRFAKLLLRLPALRSI 200
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 138/206 (66%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 1 TSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 61 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSI 206
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 2 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 61
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 62 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 121
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 122 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 181
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 182 PEQPGRFAKLLLRLPALRSI 201
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 2 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 61
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 62 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 121
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 122 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 181
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 182 PEQPGRFAKLLLRLPALRSI 201
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/202 (67%), Positives = 161/202 (79%), Gaps = 3/202 (1%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQLVDWAKHI 203
TS +MP+ERI+EAE+RV+ +P A N NIC+AT KQLFQLV WAK +
Sbjct: 2 TSNLQADMPLERIIEAEKRVEC-NDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLV 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHFT+LPL DQV LLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+AH GVG I+
Sbjct: 61 PHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIY 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYTR
Sbjct: 121 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
H EPGRFAKLLLRLP+LRSI
Sbjct: 181 THPNEPGRFAKLLLRLPALRSI 202
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 135/202 (66%), Positives = 158/202 (78%), Gaps = 8/202 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQ--------ATNICKATDKQLFQLVDWAKHI 203
EMPV+RILEAE V+ K + + TNIC+A DKQLF LV+WAK I
Sbjct: 1 EMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRI 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IF
Sbjct: 61 PHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIF 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y +
Sbjct: 121 DRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQ 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ E+ GRFAKLLLRLP+LRSI
Sbjct: 181 KYPEQQGRFAKLLLRLPALRSI 202
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 158/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIAS SHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/201 (66%), Positives = 156/201 (77%), Gaps = 8/201 (3%)
Query: 153 MPVERILEAEQRVDMKQE--------PADQDIVNEQQATNICKATDKQLFQLVDWAKHIP 204
MPV+RILEAE V+ K + TNIC+A DKQLF LV+WAK IP
Sbjct: 1 MPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIP 60
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
HF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD
Sbjct: 61 HFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFD 120
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
RVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y +
Sbjct: 121 RVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQK 180
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ E+ GRFAKLLLRLP+LRSI
Sbjct: 181 YPEQQGRFAKLLLRLPALRSI 201
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/198 (68%), Positives = 157/198 (79%), Gaps = 6/198 (3%)
Query: 152 EMPVERILEAEQRVDMKQE---PADQDIVNEQQ-ATNICKATDKQLFQLVDWAKHIPHFT 207
+MPV++ILEAE D K E P +Q VNE +NICKA D+QL LV+WAK IPHF+
Sbjct: 28 DMPVDKILEAELISDPKVEQVVPFEQ--VNENDPVSNICKAADRQLVTLVEWAKRIPHFS 85
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
+LPLEDQV+LLRAGWNELLIASFSHRSI VKD ILLA G+ V+R SAH+AGVG IFDRVL
Sbjct: 86 SLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVL 145
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
TELVSKMR+M MDKTELGCLR ++LFNPDV+ +E LREKVY SLE Y R + +
Sbjct: 146 TELVSKMRDMMMDKTELGCLRAVVLFNPDVKNPSDSAHIESLREKVYASLEAYCRSKYPD 205
Query: 328 EPGRFAKLLLRLPSLRSI 345
+PGRFAKLLLRLP+LRSI
Sbjct: 206 QPGRFAKLLLRLPALRSI 223
>gi|372293389|gb|AEX92628.1| ultraspiracle, partial [Daphnia magna]
gi|372293391|gb|AEX92629.1| ultraspiracle, partial [Daphnia magna]
gi|372293393|gb|AEX92630.1| ultraspiracle, partial [Daphnia magna]
gi|372293395|gb|AEX92631.1| ultraspiracle, partial [Daphnia magna]
gi|372293397|gb|AEX92632.1| ultraspiracle, partial [Daphnia magna]
gi|372293399|gb|AEX92633.1| ultraspiracle, partial [Daphnia magna]
gi|372293401|gb|AEX92634.1| ultraspiracle, partial [Daphnia magna]
gi|372293403|gb|AEX92635.1| ultraspiracle, partial [Daphnia magna]
gi|372293405|gb|AEX92636.1| ultraspiracle, partial [Daphnia magna]
gi|372293407|gb|AEX92637.1| ultraspiracle, partial [Daphnia magna]
gi|372293409|gb|AEX92638.1| ultraspiracle, partial [Daphnia magna]
gi|372293411|gb|AEX92639.1| ultraspiracle, partial [Daphnia magna]
gi|372293413|gb|AEX92640.1| ultraspiracle, partial [Daphnia magna]
gi|372293415|gb|AEX92641.1| ultraspiracle, partial [Daphnia magna]
gi|372293417|gb|AEX92642.1| ultraspiracle, partial [Daphnia magna]
gi|372293419|gb|AEX92643.1| ultraspiracle, partial [Daphnia magna]
gi|372293421|gb|AEX92644.1| ultraspiracle, partial [Daphnia magna]
gi|372293423|gb|AEX92645.1| ultraspiracle, partial [Daphnia magna]
gi|372293425|gb|AEX92646.1| ultraspiracle, partial [Daphnia magna]
gi|372293427|gb|AEX92647.1| ultraspiracle, partial [Daphnia magna]
gi|372293429|gb|AEX92648.1| ultraspiracle, partial [Daphnia magna]
gi|372293431|gb|AEX92649.1| ultraspiracle, partial [Daphnia magna]
gi|372293433|gb|AEX92650.1| ultraspiracle, partial [Daphnia magna]
gi|372293435|gb|AEX92651.1| ultraspiracle, partial [Daphnia magna]
gi|372293437|gb|AEX92652.1| ultraspiracle, partial [Daphnia magna]
gi|372293439|gb|AEX92653.1| ultraspiracle, partial [Daphnia magna]
gi|372293441|gb|AEX92654.1| ultraspiracle, partial [Daphnia magna]
gi|372293443|gb|AEX92655.1| ultraspiracle, partial [Daphnia magna]
gi|372293445|gb|AEX92656.1| ultraspiracle, partial [Daphnia magna]
gi|372293447|gb|AEX92657.1| ultraspiracle, partial [Daphnia magna]
gi|372293449|gb|AEX92658.1| ultraspiracle, partial [Daphnia magna]
gi|372293451|gb|AEX92659.1| ultraspiracle, partial [Daphnia magna]
gi|372293453|gb|AEX92660.1| ultraspiracle, partial [Daphnia magna]
gi|372293455|gb|AEX92661.1| ultraspiracle, partial [Daphnia magna]
gi|372293457|gb|AEX92662.1| ultraspiracle, partial [Daphnia magna]
gi|372293459|gb|AEX92663.1| ultraspiracle, partial [Daphnia magna]
gi|372293461|gb|AEX92664.1| ultraspiracle, partial [Daphnia magna]
gi|372293463|gb|AEX92665.1| ultraspiracle, partial [Daphnia magna]
gi|372293465|gb|AEX92666.1| ultraspiracle, partial [Daphnia magna]
gi|372293467|gb|AEX92667.1| ultraspiracle, partial [Daphnia magna]
gi|372293469|gb|AEX92668.1| ultraspiracle, partial [Daphnia magna]
gi|372293471|gb|AEX92669.1| ultraspiracle, partial [Daphnia magna]
gi|372293473|gb|AEX92670.1| ultraspiracle, partial [Daphnia magna]
gi|372293475|gb|AEX92671.1| ultraspiracle, partial [Daphnia magna]
gi|372293477|gb|AEX92672.1| ultraspiracle, partial [Daphnia magna]
gi|372293479|gb|AEX92673.1| ultraspiracle, partial [Daphnia magna]
gi|372293481|gb|AEX92674.1| ultraspiracle, partial [Daphnia magna]
gi|372293483|gb|AEX92675.1| ultraspiracle, partial [Daphnia magna]
gi|372293485|gb|AEX92676.1| ultraspiracle, partial [Daphnia magna]
gi|372293487|gb|AEX92677.1| ultraspiracle, partial [Daphnia magna]
gi|372293489|gb|AEX92678.1| ultraspiracle, partial [Daphnia magna]
gi|372293491|gb|AEX92679.1| ultraspiracle, partial [Daphnia magna]
gi|372293493|gb|AEX92680.1| ultraspiracle, partial [Daphnia magna]
gi|372293495|gb|AEX92681.1| ultraspiracle, partial [Daphnia magna]
gi|372293497|gb|AEX92682.1| ultraspiracle, partial [Daphnia magna]
gi|372293499|gb|AEX92683.1| ultraspiracle, partial [Daphnia magna]
gi|372293501|gb|AEX92684.1| ultraspiracle, partial [Daphnia magna]
gi|372293503|gb|AEX92685.1| ultraspiracle, partial [Daphnia magna]
gi|372293505|gb|AEX92686.1| ultraspiracle, partial [Daphnia magna]
gi|372293507|gb|AEX92687.1| ultraspiracle, partial [Daphnia magna]
gi|372293509|gb|AEX92688.1| ultraspiracle, partial [Daphnia magna]
gi|372293511|gb|AEX92689.1| ultraspiracle, partial [Daphnia magna]
gi|372293513|gb|AEX92690.1| ultraspiracle, partial [Daphnia magna]
gi|372293515|gb|AEX92691.1| ultraspiracle, partial [Daphnia magna]
gi|372293517|gb|AEX92692.1| ultraspiracle, partial [Daphnia magna]
gi|372293519|gb|AEX92693.1| ultraspiracle, partial [Daphnia magna]
Length = 162
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 125/166 (75%), Positives = 141/166 (84%), Gaps = 6/166 (3%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C+IDKRQRNRCQYCRYQ
Sbjct: 1 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQ 60
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDI 176
KCL MGMKREAVQEERQR KE+ ++++TSG +MP++R+LEAE+RV+ K EP
Sbjct: 61 KCLQMGMKREAVQEERQRNKEKGEMDMDATSGGQGDMPIDRVLEAEKRVECKDEPQ---- 116
Query: 177 VNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
VN A NIC ATDKQLFQLV+WAKHIPHFT LPL+DQV+LLRA
Sbjct: 117 VNSATAALGNICAATDKQLFQLVEWAKHIPHFTELPLDDQVVLLRA 162
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 142/164 (86%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQL LV+WAK IPHF+ LP++DQV+LLRAGWNELLIA+FSHRSI VKDGI
Sbjct: 4 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI 63
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+RSSAH+AGVG IFDRVLTELV+KMR+MKMDKTELGCLR I+LFNPD +GL
Sbjct: 64 LLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLT 123
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+VE LREKVY SLEEY + + E+PGRFAKLLLRLP+LRSI
Sbjct: 124 DPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSI 167
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 142/164 (86%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK +PHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGI
Sbjct: 5 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSITVKDGI 64
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL
Sbjct: 65 LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLS 124
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 125 NPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 168
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 142/164 (86%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGI
Sbjct: 10 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 69
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL
Sbjct: 70 LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS 129
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 130 NPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 173
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/164 (75%), Positives = 142/164 (86%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSISVKDGI
Sbjct: 7 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 66
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL
Sbjct: 67 LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLS 126
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ VE+LRE+VY SLE Y + + ++ GRFAKLLLRLP+LRSI
Sbjct: 127 NSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSI 170
>gi|402594829|gb|EJW88755.1| retinoid X receptor [Wuchereria bancrofti]
Length = 455
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/307 (45%), Positives = 193/307 (62%), Gaps = 26/307 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDRASGKHYGVY RTVRKDL Y CRE RNCIIDKRQRNRCQYC
Sbjct: 128 TKHVCAICGDRASGKHYGVY----------RTVRKDLIYLCRENRNCIIDKRQRNRCQYC 177
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG----TLIEMPVERI---------LE 160
RY+KC +MGMKREAVQEERQ ++ D +V +T G T +M E LE
Sbjct: 178 RYRKCQSMGMKREAVQEERQSSRT-DIAKVLTTGGQRHITTSQMEAESTSTYGGLEIQLE 236
Query: 161 AEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
+ E +I E N C++ + Q+ ++V+WA +P F + +EDQ L+R
Sbjct: 237 RIAAAEEASEALFSNIKIESSDINSCESLEWQMIRMVEWALMLPSFNEILVEDQARLIRF 296
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GW+EL++A ++ S K +LL P + R+ A G IFDR++ EL+ +M+++ +D
Sbjct: 297 GWHELILADIAYHSTINK--LLLWPERVMERNDAEILGCRIIFDRIINELIVRMKDLNVD 354
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
+ E+ LR IL+NP V GL++ V+E LR+KV LE+Y R +H + RFAKLLLR+P
Sbjct: 355 RMEIAALRCAILYNPSVSGLRNVSVIESLRDKVMVCLEDYCRQHHPTQTQRFAKLLLRMP 414
Query: 341 SLRSIEV 347
+LRS+ +
Sbjct: 415 ALRSLSL 421
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/164 (74%), Positives = 142/164 (86%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGI
Sbjct: 5 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 64
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL
Sbjct: 65 LLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLS 124
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ VE LRE+VY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 125 NPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 168
>gi|163676264|gb|ABY40361.1| retinoid x receptor beta b [Carassius auratus]
Length = 207
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/208 (62%), Positives = 151/208 (72%), Gaps = 16/208 (7%)
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK 136
GCKGFFKRTVRKDLSY CR+ + C++DKRQRNRCQYCRYQKCL GMKREAVQ+ERQ+ K
Sbjct: 1 GCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLATGMKREAVQDERQKNK 60
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-PADQDIVNEQQATNICKATDKQLFQ 195
ERD + E +S EMPVE+ILEAE V+ + + +D TNIC+A DKQLF
Sbjct: 61 ERDGD-YECSSSANEEMPVEKILEAETAVEHRSDLHSDATGSPNDPVTNICQAADKQLFT 119
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK IPHF LPL+DQV+LLRAGWNELLIA+FSHRSISVKD ILLA G+ V R S H
Sbjct: 120 LVEWAKRIPHFPELPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLATGLHVPRESTH 179
Query: 256 EAG--------------VGGIFDRVLTE 269
G VG +FDRVLTE
Sbjct: 180 NLGVEAFFDRESAQSAEVGALFDRVLTE 207
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 188/304 (61%), Gaps = 16/304 (5%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P G C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR RNC++DK +RN+
Sbjct: 47 PTQGMSQFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRNCVVDKDKRNQ 106
Query: 110 CQYCRYQKCLNMGMKREAVQEER-----QRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
C+YCR +KC GMK+EAVQ ER +RT D N+ S S V +L AE
Sbjct: 107 CRYCRLRKCFRAGMKKEAVQNERDRISVRRTSYEDVNQTNSLS-------VSTLLNAEIL 159
Query: 165 VDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
PA D+ ++ AT ++C++ +QL LV+WAK+IP F L ++DQV LLRA
Sbjct: 160 SRQMTSPAVGTDLSHKLVATANDVCESMKQQLLILVEWAKYIPCFCELTIDDQVALLRAH 219
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E LI + RS+ VKD +LL + R++ E +G + R+L ELV M++++MD+
Sbjct: 220 AGEHLIMGVARRSLGVKDVLLLGNDAIIPRNTP-EVEIGRVASRILDELVQPMKDVQMDE 278
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+E CL+ I+ F+PD +GL Q ++ R +V +LE+Y + GRF ++LL LP
Sbjct: 279 SEFACLKAIVFFDPDAKGLTDPQKIKSFRYQVQVNLEDYINDRQYDTRGRFGEILLMLPP 338
Query: 342 LRSI 345
L+SI
Sbjct: 339 LQSI 342
>gi|354720734|gb|AER38412.1| ultraspiracle [Sesamia nonagrioides]
Length = 267
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/236 (55%), Positives = 161/236 (68%), Gaps = 27/236 (11%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 32 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDK 91
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL GMKREAVQEERQR + S+S + E+ +ER+LE E
Sbjct: 92 RQRNRCQYCRYQKCLACGMKREAVQEERQRAARGTEDAHPSSSVQVQELSIERLLEMESL 151
Query: 165 VDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
V E D ++ + +A +++C+ +KQ+ LV WA+ IPHF+ L LEDQ
Sbjct: 152 VADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLELEDQT 211
Query: 216 LLLRAGWNELLIASFSHRSISV----KDGI--------------LLAPGVTVYRSS 253
LL++ WNELL+ + + RS+ +DG+ L PG+T++R+S
Sbjct: 212 LLIKGSWNELLLFAIAWRSMEYLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNS 267
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 123/168 (73%), Positives = 142/168 (84%), Gaps = 4/168 (2%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGI
Sbjct: 30 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 89
Query: 242 LLAPGVTVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
LLA G+ V+R+SAH AGVG IFD RVLTELVSKMR+M+MDKTELGCLR IILFNPD
Sbjct: 90 LLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDA 149
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 150 KGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 197
>gi|21464740|gb|AAM54495.1|AF411255_1 ultraspiracle protein [Spodoptera frugiperda]
Length = 276
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/239 (54%), Positives = 163/239 (68%), Gaps = 14/239 (5%)
Query: 10 VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISP----YPPNHPLCGSKHLCSICGDRA 65
+N SG + MS ++ +G + S P YPPNHPL GSKHLCSICGDRA
Sbjct: 10 LNLESGFMSPMSP-PEMKPDTAMLDGLRDDSTPPPAFKNYPPNHPLSGSKHLCSICGDRA 68
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKR
Sbjct: 69 SGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKR 128
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVN 178
EAVQEERQR + S+S + E+ +ER+LE E V E D ++
Sbjct: 129 EAVQEERQRAARGTEDAHPSSSVQVQELSIERLLEMESLVADPTEEYQFLRVGPDSNVPP 188
Query: 179 EQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
+ +A +++C+ +KQ+ LV WA+ IPHF++L LEDQ+LL++ WNELL+ + + RS+
Sbjct: 189 KFRAPVSSLCQIGNKQIAALVVWARDIPHFSSLELEDQMLLIKGSWNELLLFAIAWRSM 247
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 8/301 (2%)
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L G CSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C++DK +RN+C
Sbjct: 45 LNGQPSQCSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFCRGCVVDKDKRNQC 104
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE----QRVD 166
+YCR +KC GMK+EAVQ ER R R + +S + +P +++ AE Q +
Sbjct: 105 RYCRLKKCFRAGMKKEAVQNERDRISTRRPSYEDSLQNGGVSIP--QLVNAEHMSRQVIP 162
Query: 167 MKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
D I ++ AT ++C++ + L LV+WAK+IP F LPL+DQV LLRA E
Sbjct: 163 NPVNLPDGSIAGKKIATMNDVCESMKQHLLVLVEWAKYIPSFCDLPLDDQVALLRAHAGE 222
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
L+ + RS+ KD ++L P V + R S + + + RVL EL++ MR++ +D E
Sbjct: 223 HLVLGAARRSLPYKDILVLGPDVILPRHSQDQMDIHRVASRVLDELIAPMRDVSLDDHEF 282
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+ F+PD +GL ++MLR +V LE+Y + GRF ++LL LP L+S
Sbjct: 283 ACLKAIVFFDPDAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQS 342
Query: 345 I 345
I
Sbjct: 343 I 343
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 183/294 (62%), Gaps = 9/294 (3%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +
Sbjct: 9 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFSRTCVVDKDKRNQCRYCRLK 68
Query: 117 KCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQD 175
KC GMK+EAVQ ER R + R S E TSG+ M V +L AE P ++
Sbjct: 69 KCFRAGMKKEAVQNERDRISTRRTSYEDNLTSGS---MSVNMLLNAEVLSRQMAPPLSEN 125
Query: 176 IVNEQQAT----NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
++ + +IC++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 126 TISSNKKVAVLEDICESMKQQLLVLVEWAKYIPSFCELPLDDQVALLRAHAGEHLVLGVA 185
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
RS++ KD +LL V + R A + + I R+L ELV + ++++D E CL+ I+
Sbjct: 186 KRSLNYKDILLLGNDVIIPR-HAPQLEISRIAARILDELVKPLHDVQIDDHEFACLKAIV 244
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ LR + +LE+Y + GRF ++LL LPSL+SI
Sbjct: 245 FFDPDAKGLSDSMKIKSLRYQAQINLEDYINDRQYDSRGRFGEILLVLPSLQSI 298
>gi|162416915|emb|CAJ53825.2| putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis]
Length = 312
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 188/290 (64%), Gaps = 8/290 (2%)
Query: 60 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCL 119
ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR RNC++DK +RN+C+YCR +KC
Sbjct: 1 ICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFSRNCVVDKDKRNQCRYCRLRKCF 60
Query: 120 NMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ-DIV 177
GMK+EAVQ ER R + RDS E S + +L V +L AE P Q D+
Sbjct: 61 KAGMKKEAVQNERDRISTRRDSYEDTSQNNSL---SVSTLLNAEILSRQISSPVGQCDLT 117
Query: 178 NEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+
Sbjct: 118 HKVIATADDVCESIKQQLLVLVEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSM 177
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
+VKD +LL + R +A + +G I RVL ELV+ R++++D TE C++ I+ F+P
Sbjct: 178 AVKDVLLLGNDGIIPR-NATDMEMGTIAARVLDELVAAFRDIQIDDTEFACIKAIVFFDP 236
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +GL Q ++ R +V +LE+Y + GRF ++LL LP+L+SI
Sbjct: 237 EAKGLTDPQKIKSFRYQVQVNLEDYINDRQYDSRGRFGEILLLLPALQSI 286
>gi|443685320|gb|ELT88964.1| hypothetical protein CAPTEDRAFT_172322 [Capitella teleta]
Length = 374
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 186/298 (62%), Gaps = 10/298 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R+C++DK +RN+C+YCR +K
Sbjct: 41 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFSRSCVVDKDKRNQCRYCRLKK 100
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVES------TSGTLI--EMPVERILEAEQRVDMKQ 169
C GM++EAVQ ER R R + E + GTL+ E+ ++ E E +
Sbjct: 101 CFRAGMRKEAVQNERDRISVRRTTYEEIGQNGALSVGTLLNAELLSRQVGETEDFFQISS 160
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
DI N++ A+ +C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 PIGSADISNKKIASINEVCESMKQQLLILVEWAKYIPSFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R H+ + I +RVL ELV +RE+++D +E C+
Sbjct: 221 LGLARRSLPFKDLMLLGNDYVLPRGHNHDPDISRITNRVLDELVRPLREVQIDDSEFACI 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+P RG+ + ++ +R +V +LE+Y + GRF ++LL LP+L+SI
Sbjct: 281 KAIVFFDPHARGVSDPEKIKAMRYQVQINLEDYINDRQYDSRGRFGEILLILPNLQSI 338
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 183/307 (59%), Gaps = 14/307 (4%)
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRC 110
L G CSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C++DK +RN+C
Sbjct: 14 LNGQPSQCSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFCRGCVVDKDKRNQC 73
Query: 111 QYCRYQKCLNMGMKREA------VQEERQRTKERDSNEVESTSGTLIEMPVERILEAE-- 162
+YCR +KC GMK+EA VQ ER R R + +S + +P +++ AE
Sbjct: 74 RYCRLKKCFRAGMKKEACSSTPAVQNERDRISTRRPSYEDSLQNGGVSIP--QLVNAEHM 131
Query: 163 --QRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
Q + D I ++ AT ++C++ + L LV+WAK+IP F LPL+DQV LL
Sbjct: 132 SRQVIPNPVNLPDGSIAGKKIATMNDVCESMKQHLLVLVEWAKYIPSFCDLPLDDQVALL 191
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
RA E L+ + RS+ KD ++L P V + R S + + + RVL EL++ MR++
Sbjct: 192 RAHAGEHLVLGAARRSLPYKDILVLGPDVILPRHSQDQMDIHRVASRVLDELIAPMRDVS 251
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
+D E CL+ I+ F+PD +GL ++MLR +V LE+Y + GRF ++LL
Sbjct: 252 LDDHEFACLKAIVFFDPDAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRGRFGEILLM 311
Query: 339 LPSLRSI 345
LP L+SI
Sbjct: 312 LPPLQSI 318
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 186/328 (56%), Gaps = 23/328 (7%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
N H S H SN+S++ G + C+ICGDRA+GKHYG SC+GCKGFF+R+
Sbjct: 85 NGHGSDHE---SNTSMVGEGD------GVRTFCAICGDRATGKHYGASSCDGCKGFFRRS 135
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRK+ Y CR RNC +DK +RN+C+YCR +KC GMKREAVQ ER R + S +S
Sbjct: 136 VRKNHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKSTIDDS 195
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN--------ICKATDKQLFQLV 197
S + V +L A+ + D+ + N +C + +QL LV
Sbjct: 196 AS-----LSVTTLLNADTMSKQPSAGSAGDVTDTVSIENKKIASVNDVCDSIRQQLLVLV 250
Query: 198 DWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257
+WAK+IP F+ LPL+DQV LLRA E L+ + RS+ KD +LL + R E
Sbjct: 251 EWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCP-EV 309
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
+ + RVL ELV + ++ +D E CL+ I+ F+PD RGL + ++ +R +V +L
Sbjct: 310 EITRVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNL 369
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E+Y + GRF ++LL LP+L+SI
Sbjct: 370 EDYINDRQYDSRGRFGEILLLLPTLQSI 397
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 186/328 (56%), Gaps = 23/328 (7%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
N H S H SN+S++ G + C+ICGDRA+GKHYG SC+GCKGFF+R+
Sbjct: 37 NGHGSDHE---SNTSMVGEGD------GVRTFCAICGDRATGKHYGASSCDGCKGFFRRS 87
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRK+ Y CR RNC +DK +RN+C+YCR +KC GMKREAVQ ER R + S +S
Sbjct: 88 VRKNHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQNERDRISTKKSTIDDS 147
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN--------ICKATDKQLFQLV 197
S + V +L A+ + D+ + N +C + +QL LV
Sbjct: 148 AS-----LSVTTLLNADTMSKQPSAGSAGDVTDTVSIENKKIASVNDVCDSIRQQLLVLV 202
Query: 198 DWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257
+WAK+IP F+ LPL+DQV LLRA E L+ + RS+ KD +LL + R E
Sbjct: 203 EWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDFIIPRHCP-EV 261
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
+ + RVL ELV + ++ +D E CL+ I+ F+PD RGL + ++ +R +V +L
Sbjct: 262 EITRVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNL 321
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E+Y + GRF ++LL LP+L+SI
Sbjct: 322 EDYINDRQYDSRGRFGEILLLLPTLQSI 349
>gi|3608380|gb|AAC72724.1| nuclear transcription factor 4 homolog isoform b [Aedes aegypti]
Length = 538
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 21/309 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ +LC+IC DRA+GKHYG SC+GCKGFF+RTVRK+ SY CR R C++DK +RN+C+Y
Sbjct: 44 SANNLCTICSDRATGKHYGAASCDGCKGFFRRTVRKNHSYTCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQR------ 164
CR +KC GMK+EAVQ ER R R + ++++++G + V+ +L AE R
Sbjct: 104 CRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNG----LSVKFLLLAENRSRHFGA 159
Query: 165 -VDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+D + D D+ N++ A+ ++C + +QL LV+WAK IP F L L+DQV LLRA
Sbjct: 160 ALDDAYD-GDGDLSNKRFASINDVCDSMKQQLLILVEWAKSIPAFAELQLDDQVALLRAH 218
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMRE 276
E L+ S RS+ +++ +LL + + S A + I R++ ELVS +++
Sbjct: 219 AGEHLLLGLSRRSMHLEEMLLLGNNCIITKQSPDSKMAPNLDISRIGARIIDELVSAIKD 278
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
+K+D +EL C++ ++ F+P VRGL Q ++ LR +V +LE+Y + GRF ++L
Sbjct: 279 IKLDDSELACIKALVFFDPTVRGLNQPQKIKALRHQVLNNLEDYVSDKQYDSRGRFGEIL 338
Query: 337 LRLPSLRSI 345
L LP L+SI
Sbjct: 339 LLLPVLQSI 347
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/153 (75%), Positives = 133/153 (86%)
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
LF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+
Sbjct: 1 LFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 60
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREK
Sbjct: 61 SAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREK 120
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 121 VYASLEAYCKQKYPEQPGRFAKLLLRLPALRSI 153
>gi|3608378|gb|AAC72723.1| nuclear transcription factor 4 homolog isoform a [Aedes aegypti]
Length = 565
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 21/309 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ +LC+IC DRA+GKHYG SC+GCKGFF+RTVRK+ SY CR R C++DK +RN+C+Y
Sbjct: 71 SANNLCTICSDRATGKHYGAASCDGCKGFFRRTVRKNHSYTCRFSRQCVVDKDKRNQCRY 130
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQR------ 164
CR +KC GMK+EAVQ ER R R + ++++++G + V+ +L AE R
Sbjct: 131 CRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNG----LSVKFLLLAENRSRHFGA 186
Query: 165 -VDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+D + D D+ N++ A+ ++C + +QL LV+WAK IP F L L+DQV LLRA
Sbjct: 187 ALDDAYD-GDGDLSNKRFASINDVCDSMKQQLLILVEWAKSIPAFAELQLDDQVALLRAH 245
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMRE 276
E L+ S RS+ +++ +LL + + S A + I R++ ELVS +++
Sbjct: 246 AGEHLLLGLSRRSMHLEEMLLLGNNCIITKQSPDSKMAPNLDISRIGARIIDELVSAIKD 305
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
+K+D +EL C++ ++ F+P VRGL Q ++ LR +V +LE+Y + GRF ++L
Sbjct: 306 IKLDDSELACIKALVFFDPTVRGLNQPQKIKALRHQVLNNLEDYVSDKQYDSRGRFGEIL 365
Query: 337 LRLPSLRSI 345
L LP L+SI
Sbjct: 366 LLLPVLQSI 374
>gi|157129052|ref|XP_001655253.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
gi|108872374|gb|EAT36599.1| AAEL011323-PA, partial [Aedes aegypti]
Length = 531
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 193/309 (62%), Gaps = 21/309 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ +LC+IC DRA+GKHYG SC+GCKGFF+R+VRK+ SY CR R C++DK +RN+C+Y
Sbjct: 38 SANNLCTICSDRATGKHYGAASCDGCKGFFRRSVRKNHSYTCRFSRQCVVDKDKRNQCRY 97
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQR------ 164
CR +KC GMK+EAVQ ER R R + ++++++G + V+ +L AE R
Sbjct: 98 CRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNG----LSVKFLLLAENRSRHFGA 153
Query: 165 -VDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+D + D D+ N++ A+ ++C + +QL LV+WAK IP F L L+DQV LLRA
Sbjct: 154 ALDDAYD-GDGDLSNKRFASINDVCDSMKQQLLILVEWAKSIPAFAELQLDDQVALLRAH 212
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMRE 276
E L+ S RS+ +++ +LL + + S A + I R++ ELVS +++
Sbjct: 213 AGEHLLLGLSRRSMHLEEMLLLGNNCIITKQSPDSKMAPNLDISRIGARIIDELVSAIKD 272
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
+K+D +EL C++ ++ F+P VRGL Q ++ LR +V +LE+Y + GRF ++L
Sbjct: 273 IKLDDSELACIKALVFFDPTVRGLNQPQKIKALRHQVLNNLEDYVSDKQYDSRGRFGEIL 332
Query: 337 LRLPSLRSI 345
L LP L+SI
Sbjct: 333 LLLPVLQSI 341
>gi|157129050|ref|XP_001655252.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
Length = 532
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 193/309 (62%), Gaps = 21/309 (6%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ +LC+IC DRA+GKHYG SC+GCKGFF+R+VRK+ SY CR R C++DK +RN+C+Y
Sbjct: 38 SANNLCTICSDRATGKHYGAASCDGCKGFFRRSVRKNHSYTCRFSRQCVVDKDKRNQCRY 97
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSN--EVESTSGTLIEMPVERILEAEQR------ 164
CR +KC GMK+EAVQ ER R R + ++++++G + V+ +L AE R
Sbjct: 98 CRLRKCFKAGMKKEAVQNERDRISCRRPSMEDIDTSNG----LSVKFLLLAENRSRHFGA 153
Query: 165 -VDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+D + D D+ N++ A+ ++C + +QL LV+WAK IP F L L+DQV LLRA
Sbjct: 154 ALDDAYD-GDGDLSNKRFASINDVCDSMKQQLLILVEWAKSIPAFAELQLDDQVALLRAH 212
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMRE 276
E L+ S RS+ +++ +LL + + S A + I R++ ELVS +++
Sbjct: 213 AGEHLLLGLSRRSMHLEEMLLLGNNCIITKQSPDSKMAPNLDISRIGARIIDELVSAIKD 272
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
+K+D +EL C++ ++ F+P VRGL Q ++ LR +V +LE+Y + GRF ++L
Sbjct: 273 IKLDDSELACIKALVFFDPTVRGLNQPQKIKALRHQVLNNLEDYVSDKQYDSRGRFGEIL 332
Query: 337 LRLPSLRSI 345
L LP L+SI
Sbjct: 333 LLLPVLQSI 341
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 180/298 (60%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 56 GISSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCRFSRQCVIDKDKRNQCRY 115
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ ++ S + + + +AE P+
Sbjct: 116 CRLKKCFRAGMKKEAVQNERDRISIRRSSYEDNGS-----LSINVLTQAEAMAQQYSSPS 170
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
DI ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 171 PVHSADIAMKKVATINDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 230
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RSI D +LL + E + + R+L ELV +R++++D E CL
Sbjct: 231 LGVAKRSIPYTDFLLLGNDFII-PMHCPELEIARVATRILDELVKPLRDIQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 290 KAIIFFDPDCKGLSEPGKVKNMRFQVQVNLEDYINDRQYDSRGRFSDILLLLPPLQSI 347
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/184 (65%), Positives = 142/184 (77%), Gaps = 10/184 (5%)
Query: 47 PNHPLCG----SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 197 PTHPSGNMAPFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 256
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
DKRQRNRCQYCRYQKCL MGMKREAVQEERQR K+R +EVESTS +MPVE+ILEAE
Sbjct: 257 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRSESEVESTSSANEDMPVEKILEAE 316
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + + TNIC+A DKQLF LV+WAK +PHF+ LPL+DQV+
Sbjct: 317 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVI 376
Query: 217 LLRA 220
LLRA
Sbjct: 377 LLRA 380
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 108/125 (86%)
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MD
Sbjct: 458 GWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD 517
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP
Sbjct: 518 KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 577
Query: 341 SLRSI 345
+LRSI
Sbjct: 578 ALRSI 582
>gi|126321023|ref|XP_001367478.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Monodelphis
domestica]
Length = 455
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 1/310 (0%)
Query: 36 SSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
SS+ S N P G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR
Sbjct: 37 SSDGSATEQTSMNTPDNGVNSLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR 96
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
R C++DK +RN+C+YCR +KC GMKREAVQ ER R R +N S ++ +
Sbjct: 97 FSRQCVVDKDKRNQCRYCRLKKCFRAGMKREAVQNERDRISTRRNNFEGSNIPSINTLAQ 156
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
L + V D ++ ++C++ +QL LV+WAK+IP F LPL+DQV
Sbjct: 157 AEALSRQIPVSSPNANTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQV 216
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LLRA E L+ + RS+ KD +LL ++R+S E + + +R+L ELV +
Sbjct: 217 ALLRAHAGEHLLLGATKRSMMYKDILLLGNNYIIHRNSC-EVEISRVANRILDELVRPFQ 275
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
E+++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +L
Sbjct: 276 EIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGEL 335
Query: 336 LLRLPSLRSI 345
LL LP+L+SI
Sbjct: 336 LLLLPTLQSI 345
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 24/313 (7%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNCI+DK +RN+C+YC
Sbjct: 70 SQH-CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFSRNCIVDKDKRNQCRYC 128
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVES------TSGTLI--EMPVERILEAEQRV 165
R +KC GMK+EAVQ ER R R + E+ + G+L+ EM ++ A ++
Sbjct: 129 RLRKCFKAGMKKEAVQNERDRISCRRPSYEENNQNNGLSVGSLLNAEMLSRQVGAALEQ- 187
Query: 166 DMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
M P D D+ N+Q A+ ++C + +QL LV+WAK+IP FT L L+DQV LLRA
Sbjct: 188 -MGPTPVNDYDLSNKQLASINDVCDSMKQQLLILVEWAKYIPAFTDLQLDDQVALLRAHA 246
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSS----------AHEAGVGGIFDRVLTELVS 272
E L+ + RS+ +KD +LL + + S + + + + R++ ELV
Sbjct: 247 GEHLLLGLARRSMHLKDILLLGNNCIITKHSPVMMLTDSRVSPDLDISRVGSRIMDELVK 306
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
M E+++D TE CL+ I+ F+P+ +GL ++ LR ++ +LE+Y + GRF
Sbjct: 307 PMTEVQVDDTEFACLKAIVFFDPNAKGLSEPARIKALRYQIQINLEDYISDRQYDSRGRF 366
Query: 333 AKLLLRLPSLRSI 345
+LLL LP+L+SI
Sbjct: 367 GELLLTLPALQSI 379
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 204/339 (60%), Gaps = 21/339 (6%)
Query: 23 FGSNNHSSSHNNGSSNSSIISPYPPNHPLCG--SKHLCSICGDRASGKHYGVYSCEGCKG 80
G + S G++ S++S P + G S+H C+ICGDRA+GKHYG SC+GCKG
Sbjct: 1 MGLADADLSMGAGAAGGSVLSL--PGSGVGGVLSQH-CAICGDRATGKHYGAASCDGCKG 57
Query: 81 FFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERD 139
FF+R+VRK+ Y CR RNC++DK +RN+C+YCR +KC GMK+EAVQ ER R R
Sbjct: 58 FFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRP 117
Query: 140 SNEVESTSGTLIEMPVERILEAEQ-------RVDMKQEPADQDIVNEQQA--TNICKATD 190
S E +S +G+ + V +L+AE +++ +D D+ +Q A ++C +
Sbjct: 118 SYEEQSNNGS--GLSVVSLLQAEMLSRQVGAALELGSPNSDIDLSTKQIANINDVCDSMK 175
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
+QL LV+WAK+IP F+ L L+DQV LLRA E L+ + RS+ ++D +LL +
Sbjct: 176 QQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIIT 235
Query: 251 RSSA----HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
++ + + + RV+ ELV + E+++D TE CL+ I+ F+P+ +GL Q +
Sbjct: 236 KNCPEGRNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRI 295
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR ++ +LE+Y + GRF ++LL LP+L+SI
Sbjct: 296 KQLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSI 334
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 192/308 (62%), Gaps = 19/308 (6%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNCI+DK +RN+C+YC
Sbjct: 70 SQH-CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFSRNCIVDKDKRNQCRYC 128
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVES------TSGTLI--EMPVERILEAEQRV 165
R +KC GMK+EAVQ ER R R + E+ + G+L+ EM ++ A ++
Sbjct: 129 RLRKCFKAGMKKEAVQNERDRISCRRPSYEENNQNNGLSVGSLLNAEMLSRQVGAALEQ- 187
Query: 166 DMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
M P D D+ N+Q A+ ++C + +QL LV+WAK+IP FT L L+DQV LLRA
Sbjct: 188 -MGPTPVNDYDLSNKQLASINDVCDSMKQQLLILVEWAKYIPAFTDLQLDDQVALLRAHA 246
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREM 277
E L+ + RS+ +KD +LL + + S + + + + R++ ELV M E+
Sbjct: 247 GEHLLLGLARRSMHLKDILLLGNNCIITKHSPDSRVSPDLDISRVGSRIMDELVKPMTEV 306
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
++D TE CL+ I+ F+P+ +GL ++ LR ++ +LE+Y + GRF +LLL
Sbjct: 307 QVDDTEFACLKAIVFFDPNAKGLSEPARIKALRYQIQINLEDYISDRQYDSRGRFGELLL 366
Query: 338 RLPSLRSI 345
LP+L+SI
Sbjct: 367 TLPALQSI 374
>gi|328717679|ref|XP_003246275.1| PREDICTED: transcription factor HNF-4 homolog isoform 4
[Acyrthosiphon pisum]
Length = 420
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 12/315 (3%)
Query: 40 SIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
+I +P + P+ CSICGDRA+GKHYG SC+GCKGFF+R+VRK Y+CR RN
Sbjct: 57 AIDAPQVHSPPMTNQNQACSICGDRATGKHYGAASCDGCKGFFRRSVRKSHFYSCRFSRN 116
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL 159
CI++K +RN+C+YCR +KC GM++EAVQ ER R R + E + + V +L
Sbjct: 117 CIVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCAS--GLSVTSLL 174
Query: 160 EAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
AE + + A D ++ N+ A ++C++ QL LVDWAK IP FT L L DQV
Sbjct: 175 NAEILSRSESDTAEDTNLTNKLVANIGDVCESMKTQLLFLVDWAKRIPAFTELQLNDQVS 234
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTEL 270
LLRA E L+ + RS+ +KD +LL + R + G+ D RVL EL
Sbjct: 235 LLRAHAGEHLLLGLAKRSLMLKDVLLLGNNRVITR-HVPDNGIPSDLDISRVGSRVLDEL 293
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V + ++++D TE CL+ I+ F+P+ +GL + +R++++ +LE+Y E G
Sbjct: 294 VKPLNDVQIDDTEFACLKAIVFFDPNAKGLNESDRIRRMRKQIHRNLEDYISDRQYETCG 353
Query: 331 RFAKLLLRLPSLRSI 345
RFA+LLL LP+L+SI
Sbjct: 354 RFAELLLTLPALQSI 368
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 202/331 (61%), Gaps = 21/331 (6%)
Query: 31 SHNNGSSNSSIISPYPPNHPLCG--SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRK 88
S G++ S++S P + G S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK
Sbjct: 41 SMGAGAAGGSVLSL--PGSGVGGVLSQH-CAICGDRATGKHYGAASCDGCKGFFRRSVRK 97
Query: 89 DLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERDSNEVESTS 147
+ Y CR RNC++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +S +
Sbjct: 98 NHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSNN 157
Query: 148 GTLIEMPVERILEAEQ-------RVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVD 198
G+ + V +L+AE +++ +D D+ +Q A ++C + +QL LV+
Sbjct: 158 GS--GLSVVSLLQAEMLSRQVGAALELGSPNSDIDLSTKQIANINDVCDSMKQQLLILVE 215
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA---- 254
WAK+IP F+ L L+DQV LLRA E L+ + RS+ ++D +LL + ++
Sbjct: 216 WAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEGRN 275
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+ + + RV+ ELV + E+++D TE CL+ I+ F+P+ +GL Q ++ LR ++
Sbjct: 276 QDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQIQ 335
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LE+Y + GRF ++LL LP+L+SI
Sbjct: 336 INLEDYISDRQYDSRGRFGEILLTLPALQSI 366
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 201/327 (61%), Gaps = 21/327 (6%)
Query: 35 GSSNSSIISPYPPNHPLCG--SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY 92
G++ S++S P + G S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y
Sbjct: 4 GAAGGSVLSL--PGSGVGGVLSQH-CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLY 60
Query: 93 ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLI 151
CR RNC++DK +RN+C+YCR +KC GMK+EAVQ ER R R S E +S +G+
Sbjct: 61 TCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRPSYEEQSNNGS-- 118
Query: 152 EMPVERILEAEQ-------RVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKH 202
+ V +L+AE +++ +D D+ +Q A ++C + +QL LV+WAK+
Sbjct: 119 GLSVVSLLQAEMLSRQVGAALELGSPNSDIDLSTKQIANINDVCDSMKQQLLILVEWAKY 178
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA----HEAG 258
IP F+ L L+DQV LLRA E L+ + RS+ ++D +LL + ++ +
Sbjct: 179 IPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLQDVLLLGNNCIITKNCPEGRNQDLD 238
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
+ + RV+ ELV + E+++D TE CL+ I+ F+P+ +GL Q ++ LR ++ +LE
Sbjct: 239 ISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEPQRIKQLRYQIQINLE 298
Query: 319 EYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+Y + GRF ++LL LP+L+SI
Sbjct: 299 DYISDRQYDSRGRFGEILLTLPALQSI 325
>gi|328717673|ref|XP_001946928.2| PREDICTED: transcription factor HNF-4 homolog isoform 1
[Acyrthosiphon pisum]
Length = 383
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 12/315 (3%)
Query: 40 SIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
+I +P + P+ CSICGDRA+GKHYG SC+GCKGFF+R+VRK Y+CR RN
Sbjct: 20 AIDAPQVHSPPMTNQNQACSICGDRATGKHYGAASCDGCKGFFRRSVRKSHFYSCRFSRN 79
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL 159
CI++K +RN+C+YCR +KC GM++EAVQ ER R R + E + + V +L
Sbjct: 80 CIVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCAS--GLSVTSLL 137
Query: 160 EAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
AE + + A D ++ N+ A ++C++ QL LVDWAK IP FT L L DQV
Sbjct: 138 NAEILSRSESDTAEDTNLTNKLVANIGDVCESMKTQLLFLVDWAKRIPAFTELQLNDQVS 197
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTEL 270
LLRA E L+ + RS+ +KD +LL + R + G+ D RVL EL
Sbjct: 198 LLRAHAGEHLLLGLAKRSLMLKDVLLLGNNRVITR-HVPDNGIPSDLDISRVGSRVLDEL 256
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V + ++++D TE CL+ I+ F+P+ +GL + +R++++ +LE+Y E G
Sbjct: 257 VKPLNDVQIDDTEFACLKAIVFFDPNAKGLNESDRIRRMRKQIHRNLEDYISDRQYETCG 316
Query: 331 RFAKLLLRLPSLRSI 345
RFA+LLL LP+L+SI
Sbjct: 317 RFAELLLTLPALQSI 331
>gi|198472026|ref|XP_001355813.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
gi|198139573|gb|EAL32872.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
Length = 686
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 187/306 (61%), Gaps = 17/306 (5%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 140 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYC 199
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 200 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAA 257
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP ++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 258 MEPNINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEH 317
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTELVSKMREMKM 279
L+ S RS+ +KD +LL+ + R + GV D R++ ELV+ MR++ +
Sbjct: 318 LLLGLSRRSMHLKDVLLLSNNCVITRHCP-DPGVSPNLDISRIGARIIDELVTVMRDIGI 376
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL L
Sbjct: 377 DDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLIL 436
Query: 340 PSLRSI 345
P L+SI
Sbjct: 437 PVLQSI 442
>gi|328717677|ref|XP_003246274.1| PREDICTED: transcription factor HNF-4 homolog isoform 3
[Acyrthosiphon pisum]
Length = 375
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 12/315 (3%)
Query: 40 SIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
+I +P + P+ CSICGDRA+GKHYG SC+GCKGFF+R+VRK Y+CR RN
Sbjct: 12 AIDAPQVHSPPMTNQNQACSICGDRATGKHYGAASCDGCKGFFRRSVRKSHFYSCRFSRN 71
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL 159
CI++K +RN+C+YCR +KC GM++EAVQ ER R R + E + + V +L
Sbjct: 72 CIVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCAS--GLSVTSLL 129
Query: 160 EAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
AE + + A D ++ N+ A ++C++ QL LVDWAK IP FT L L DQV
Sbjct: 130 NAEILSRSESDTAEDTNLTNKLVANIGDVCESMKTQLLFLVDWAKRIPAFTELQLNDQVS 189
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTEL 270
LLRA E L+ + RS+ +KD +LL + R + G+ D RVL EL
Sbjct: 190 LLRAHAGEHLLLGLAKRSLMLKDVLLLGNNRVITR-HVPDNGIPSDLDISRVGSRVLDEL 248
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V + ++++D TE CL+ I+ F+P+ +GL + +R++++ +LE+Y E G
Sbjct: 249 VKPLNDVQIDDTEFACLKAIVFFDPNAKGLNESDRIRRMRKQIHRNLEDYISDRQYETCG 308
Query: 331 RFAKLLLRLPSLRSI 345
RFA+LLL LP+L+SI
Sbjct: 309 RFAELLLTLPALQSI 323
>gi|395510982|ref|XP_003759744.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Sarcophilus harrisii]
Length = 455
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 180/298 (60%), Gaps = 1/298 (0%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
N P G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +R
Sbjct: 49 NTPDNGVNSLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKR 108
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
N+C+YCR +KC GMK+EAVQ ER R R +N S ++ + L + V
Sbjct: 109 NQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNNFEGSNIPSINTLAQAEALSRQIPVSS 168
Query: 168 KQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 169 PSANTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 228
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL
Sbjct: 229 LGATKRSMMYKDILLLGNNCIIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACL 287
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 288 KAIVFFDPDAKGLSDPMKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|157965651|gb|ABW06847.1| retinoid X receptor [Poeciliopsis lucida]
Length = 176
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/176 (69%), Positives = 141/176 (80%), Gaps = 3/176 (1%)
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-A 172
R QKCL MGMKREAVQEERQR KER NEVESTS +MPVE+IL+AE V+ K E +
Sbjct: 1 RXQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNDDMPVEKILDAELAVEPKTETYS 60
Query: 173 DQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D N TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 61 DGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 120
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
SHRS++VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKM++M+MDKTE G
Sbjct: 121 SHRSVTVKDGILLATGLHVHRNSAHSAGVGSIFDRVLTELVSKMKDMQMDKTEPGV 176
>gi|328717675|ref|XP_003246273.1| PREDICTED: transcription factor HNF-4 homolog isoform 2
[Acyrthosiphon pisum]
Length = 404
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 12/315 (3%)
Query: 40 SIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN 99
+I +P + P+ CSICGDRA+GKHYG SC+GCKGFF+R+VRK Y+CR RN
Sbjct: 56 AIDAPQVHSPPMTNQNQACSICGDRATGKHYGAASCDGCKGFFRRSVRKSHFYSCRFSRN 115
Query: 100 CIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL 159
CI++K +RN+C+YCR +KC GM++EAVQ ER R R + E + + V +L
Sbjct: 116 CIVNKDKRNQCRYCRLRKCFKAGMRKEAVQNERDRINCRRPSYEEQPCAS--GLSVTSLL 173
Query: 160 EAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
AE + + A D ++ N+ A ++C++ QL LVDWAK IP FT L L DQV
Sbjct: 174 NAEILSRSESDTAEDTNLTNKLVANIGDVCESMKTQLLFLVDWAKRIPAFTELQLNDQVS 233
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTEL 270
LLRA E L+ + RS+ +KD +LL + R + G+ D RVL EL
Sbjct: 234 LLRAHAGEHLLLGLAKRSLMLKDVLLLGNNRVITR-HVPDNGIPSDLDISRVGSRVLDEL 292
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V + ++++D TE CL+ I+ F+P+ +GL + +R++++ +LE+Y E G
Sbjct: 293 VKPLNDVQIDDTEFACLKAIVFFDPNAKGLNESDRIRRMRKQIHRNLEDYISDRQYETCG 352
Query: 331 RFAKLLLRLPSLRSI 345
RFA+LLL LP+L+SI
Sbjct: 353 RFAELLLTLPALQSI 367
>gi|161076819|ref|NP_001097126.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
gi|157400121|gb|ABV53653.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
Length = 708
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 145 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 204
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 205 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 262
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 263 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 322
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 323 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 382
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 383 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 442
Query: 344 SI 345
SI
Sbjct: 443 SI 444
>gi|347967270|ref|XP_308036.5| AGAP002155-PA [Anopheles gambiae str. PEST]
gi|347967272|ref|XP_003436042.1| AGAP002155-PB [Anopheles gambiae str. PEST]
gi|333466373|gb|EAA03702.6| AGAP002155-PA [Anopheles gambiae str. PEST]
gi|333466374|gb|EGK96219.1| AGAP002155-PB [Anopheles gambiae str. PEST]
Length = 596
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 200/332 (60%), Gaps = 17/332 (5%)
Query: 29 SSSHNNGSSNSSIISPYPPNHPLCGSK-HLCSICGDRASGKHYGVYSCEGCKGFFKRTVR 87
S SH + ++ S +SP PN S ++C+IC DRA+GKHYG SC+GCKGFF+R+VR
Sbjct: 21 SPSHTSDTAYESCLSPLQPNDSGSFSAINVCAICCDRATGKHYGAASCDGCKGFFRRSVR 80
Query: 88 KDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTS 147
K+ +Y+CR RNC++DK +RN+C+YCR +KC GMK+EAVQ ER R R + +
Sbjct: 81 KNHTYSCRFSRNCVVDKDKRNQCRYCRLKKCFKAGMKKEAVQNERDRISCRKPSTDDKN- 139
Query: 148 GTLIEMPVERILEAEQ-------RVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVD 198
T+ + V+ +L AE +D + + D+ +++ A+ ++C + +QL LV+
Sbjct: 140 -TINGLSVKFLLRAENFSRHFGAALDETNDAEEADLSSKRFASINDVCDSMKQQLLILVE 198
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR-----SS 253
WAK IP F L L+DQV LLRA E L+ S RS+ ++D +LL + + +
Sbjct: 199 WAKSIPAFAELQLDDQVALLRAHAGEHLLLGLSRRSMHLQDMLLLGNNCIITKQCPDANM 258
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
+ + I R++ ELVS M+E+++D +EL C++ ++ F+P +GL ++ LR +V
Sbjct: 259 SPNLDISRIGARIIDELVSAMKEIQIDDSELACIKALVFFDPSAKGLNEPAKIKSLRHQV 318
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LE+Y + GRF ++LL LP L+SI
Sbjct: 319 LNNLEDYISDKLYDSRGRFGEILLLLPVLQSI 350
>gi|1575768|gb|AAB09592.1| hepatocyte nuclear factor 4 homolog [Drosophila melanogaster]
Length = 666
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 103 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 162
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 163 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAAMEP 220
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 221 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 280
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 281 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 340
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 341 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 400
Query: 344 SI 345
SI
Sbjct: 401 SI 402
>gi|195339307|ref|XP_002036261.1| GM12759 [Drosophila sechellia]
gi|194130141|gb|EDW52184.1| GM12759 [Drosophila sechellia]
Length = 703
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 199
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 200 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAAMEP 257
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 258 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 317
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 318 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 377
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 378 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 437
Query: 344 SI 345
SI
Sbjct: 438 SI 439
>gi|241669014|gb|ACS68165.1| FI04795p [Drosophila melanogaster]
Length = 738
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 175 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 234
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 235 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 292
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 293 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 352
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 353 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 412
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 413 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 472
Query: 344 SI 345
SI
Sbjct: 473 SI 474
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIGDVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LPSL+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPSLQSI 347
>gi|12644293|sp|P49866.2|HNF4_DROME RecName: Full=Transcription factor HNF-4 homolog; Short=dHNF4;
AltName: Full=Nuclear receptor subfamily 2 group A
member 4
Length = 666
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 103 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 162
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 163 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 220
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 221 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 280
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 281 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 340
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 341 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 400
Query: 344 SI 345
SI
Sbjct: 401 SI 402
>gi|195156579|ref|XP_002019177.1| GL26219 [Drosophila persimilis]
gi|194115330|gb|EDW37373.1| GL26219 [Drosophila persimilis]
Length = 518
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 187/306 (61%), Gaps = 17/306 (5%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 140 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYC 199
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 200 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAA 257
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP ++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 258 MEPNINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEH 317
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTELVSKMREMKM 279
L+ S RS+ +KD +LL+ + R + GV D R++ ELV+ MR++ +
Sbjct: 318 LLLGLSRRSMHLKDVLLLSNNCVITRHCP-DPGVSPNLDISRIGARIIDELVTVMRDIGI 376
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL L
Sbjct: 377 DDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLIL 436
Query: 340 PSLRSI 345
P L+SI
Sbjct: 437 PVLQSI 442
>gi|24582909|ref|NP_723413.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
gi|22945983|gb|AAN10680.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
Length = 732
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 169 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 228
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 229 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 286
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 287 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 346
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 347 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 406
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 407 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 466
Query: 344 SI 345
SI
Sbjct: 467 SI 468
>gi|24582907|ref|NP_476887.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|442626918|ref|NP_723414.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
gi|22945982|gb|AAF52702.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|28317035|gb|AAO39537.1| RE09535p [Drosophila melanogaster]
gi|220942524|gb|ACL83805.1| Hnf4-PA [synthetic construct]
gi|220952740|gb|ACL88913.1| Hnf4-PA [synthetic construct]
gi|440213579|gb|AAF52703.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
Length = 704
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 141 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 200
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 201 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAAMEP 258
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 259 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 318
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 319 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 378
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 379 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 438
Query: 344 SI 345
SI
Sbjct: 439 SI 440
>gi|195577679|ref|XP_002078696.1| GD22387 [Drosophila simulans]
gi|194190705|gb|EDX04281.1| GD22387 [Drosophila simulans]
Length = 703
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 199
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 200 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 257
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 258 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 317
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 318 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 377
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 378 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 437
Query: 344 SI 345
SI
Sbjct: 438 SI 439
>gi|194858671|ref|XP_001969229.1| GG24056 [Drosophila erecta]
gi|190661096|gb|EDV58288.1| GG24056 [Drosophila erecta]
Length = 704
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 141 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 200
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 201 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAAMEP 258
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 259 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 318
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 319 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 378
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 379 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 438
Query: 344 SI 345
SI
Sbjct: 439 SI 440
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASISDVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGTTKRSMVFKDVLLLGNDYIVPRHCPELAEMNRVSVRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPSKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 180/299 (60%), Gaps = 13/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ YACR R CI+DK +RN+C+Y
Sbjct: 54 GISAFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYACRFSRQCIVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP- 171
CR +KC GMK+EAVQ ER R R S+ ++ S + + + +AE V ++ P
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISMRRSSYEDNGS-----LSISVLTQAEAMV-LQYSPL 167
Query: 172 -----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+D + +++C++ +QL LV+WAK+IP F LPL+DQV LLRA L
Sbjct: 168 SPAHSSDISMKKVASISDVCESMKQQLLLLVEWAKYIPAFCELPLDDQVALLRAHAGAHL 227
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL + E V + R+L ELV +RE+++D E C
Sbjct: 228 LLGVAKRSLPYKDFLLLGNDF-IMPMHCPELEVARVACRILDELVKPLREIQIDDNEYAC 286
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL Q V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 287 LKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDYINDRQYDSRGRFSDILLLLPPLQSI 345
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIGDVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LPSL+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPSLQSI 347
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 70 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 129
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 130 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 184
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 185 SGINGDIRAKKIASIGDVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 244
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 245 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 304
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LPSL+SI
Sbjct: 305 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPSLQSI 362
>gi|290555896|ref|NP_001166834.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
gi|2734852|gb|AAB93763.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
Length = 410
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 185/301 (61%), Gaps = 12/301 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 28 SQH-CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYC 86
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE----QRVDMKQ 169
R +KC GMK+EAVQ ER R R + E T + V +L AE + +D
Sbjct: 87 RLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQAN--GLSVVSLLNAELLSRKVIDETV 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+D +I N + A ++C + +QL LV+WAK+IP FT L L+DQV LLRA E L+
Sbjct: 145 NVSDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTVLHLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAH---EAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+ RS+ +KD +LL + + + + + I RV+ E+V +RE+ +D TE
Sbjct: 205 LGCARRSLHLKDILLLGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEF 264
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+ F+P+ +GL Q ++ LR ++ +LE+Y + GRF +LLL LP L+S
Sbjct: 265 ACLKAIVFFDPNAKGLSQPQKIKQLRYQIQINLEDYISDRQYDGRGRFGELLLCLPPLQS 324
Query: 345 I 345
I
Sbjct: 325 I 325
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 203/342 (59%), Gaps = 21/342 (6%)
Query: 20 MSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCG--SKHLCSICGDRASGKHYGVYSCEG 77
+ F + S G++ S++ P + G S+H C+ICGDRA+GKHYG SC+G
Sbjct: 84 LEKFAIKDADLSMGAGAAGGSVLGL--PGSGVGGVLSQH-CAICGDRATGKHYGAASCDG 140
Query: 78 CKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK- 136
CKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 141 CKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISC 200
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQ-------RVDMKQEPADQDIVNEQQA--TNICK 187
R S E ++ +G+ + V +L+AE +++ D D+ +Q A ++C
Sbjct: 201 RRPSYEEQTNNGS--GLSVVSLLQAEMLSRQVGAALELGSPGNDIDLSTKQIANINDVCD 258
Query: 188 ATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGV 247
+ +QL LV+WAK+IP F+ L L+DQV LLRA E L+ + RS+ +KD +LL
Sbjct: 259 SMKQQLLILVEWAKYIPAFSELTLDDQVALLRAHAGEHLLLGVARRSMQLKDVLLLGNNC 318
Query: 248 TVYRSSA----HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
+ ++ + + + RV+ ELV + E+++D TE CL+ I+ F+P+ +GL
Sbjct: 319 IITKNCPEGRNQDLDISKVGIRVMDELVKPLNEVQIDDTEFACLKAIVFFDPNAKGLSEP 378
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
Q ++ LR ++ +LE+Y + GRF ++LL LP+L+SI
Sbjct: 379 QRIKQLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQSI 420
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 179/295 (60%), Gaps = 5/295 (1%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 65 GVSSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRQCVIDKDKRNQCRY 124
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ E I + + A+Q + + +
Sbjct: 125 CRLKKCFRAGMKKEAVQNERDRISIRRSS-YEDNGSLSINILTQAEAMAQQYLSLSPVHS 183
Query: 173 DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
DI ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 184 -TDIAMKKIATINDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGV 242
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ RSI D +LL + E + + R+L ELV +R++++D E CL+ I
Sbjct: 243 AKRSIPYTDFLLLGNDFII-PMHCPELEIARVATRILDELVKPLRDIQIDDNEYACLKAI 301
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I F+PD +GL V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 302 IFFDPDCKGLSEAGKVKNMRFQVQVNLEDYINDRQYDSRGRFSDILLLLPPLQSI 356
>gi|112984316|ref|NP_001037474.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
Length = 436
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 185/301 (61%), Gaps = 12/301 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 54 SQH-CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYC 112
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE----QRVDMKQ 169
R +KC GMK+EAVQ ER R R + E T + V +L AE + +D
Sbjct: 113 RLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQAN--GLSVVSLLNAELLSRKVIDETV 170
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+D +I N + A ++C + +QL LV+WAK+IP FT L L+DQV LLRA E L+
Sbjct: 171 NVSDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTVLHLDDQVALLRAHAGEHLL 230
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAH---EAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+ RS+ +KD +LL + + + + + I RV+ E+V +RE+ +D TE
Sbjct: 231 LGCARRSLHLKDILLLGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEF 290
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+ F+P+ +GL Q ++ LR ++ +LE+Y + GRF +LLL LP L+S
Sbjct: 291 ACLKAIVFFDPNAKGLSQPQKIKQLRYQIQINLEDYISDRQYDGRGRFGELLLCLPPLQS 350
Query: 345 I 345
I
Sbjct: 351 I 351
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 206/343 (60%), Gaps = 25/343 (7%)
Query: 9 LVNFNSGGANSMS-SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASG 67
+VN N+ ++S+ F S+ +++ N SS+ G+ LC+ICGDRA+G
Sbjct: 1 MVNVNTQVSSSVEFPFDSSPAETANMNASSH-------------LGAGSLCAICGDRATG 47
Query: 68 KHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127
KHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+YCR +KC GMK+EA
Sbjct: 48 KHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEA 107
Query: 128 VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQA-- 182
VQ ER R R S+ +S+ + + +++A+ PA + DI ++ A
Sbjct: 108 VQNERDRISTRRSSYEDSSLPS-----INALIQADVLSRQITSPAPILNGDIRTKKIAAI 162
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +L
Sbjct: 163 TDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSMLFKDVLL 222
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L + R+ E VG + R+L ELV +E+++D E CL+ I+ F+PD +GL
Sbjct: 223 LGNDYIIPRNCP-ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIVFFDPDAKGLSD 281
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 282 PGKIKRMRYQVQVSLEDYINDRQYDCRGRFGELLLLLPTLQSI 324
>gi|242019940|ref|XP_002430416.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515546|gb|EEB17678.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 362
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 181/297 (60%), Gaps = 11/297 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +K
Sbjct: 33 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLRK 92
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ--RVDMKQEPADQD 175
C GMK+EAVQ ER R R + E+ + V +L AE R D D
Sbjct: 93 CFKAGMKKEAVQNERDRISCRRPSYDETNQNN--GLSVTSLLNAEMLSRQQNGSPVNDYD 150
Query: 176 IVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
+ N+Q A +IC++ +QL LV+WAK+IP FT L L+DQV LLRA E L+ + R
Sbjct: 151 LSNKQIAHINDICESMRQQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGLARR 210
Query: 234 SISVKDGILLAPGVTVYRSSAHEA-----GVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
S+ +KD +LL + R + A + + RV+ ELV + E+++D TE CL+
Sbjct: 211 SLHLKDILLLGNNCIITRYCSENARSPDVDISRVGIRVMDELVKPLTEVQIDDTEFACLK 270
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+ F+P+ +GL ++ LR ++ +LE+Y + GRF ++LL LP+L+SI
Sbjct: 271 AIVFFDPNAKGLSDTTRIKHLRYQIQINLEDYISDRQYDTRGRFGEILLILPALQSI 327
>gi|189164166|gb|ACD77184.1| putative hepatocyte nuclear factor 4 nuclear hormone receptor
[Callosobruchus maculatus]
Length = 507
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 184/304 (60%), Gaps = 14/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G C+ICGDRA+GKHYG SC+GCKGFF+R+ RK+ Y CR RNC++DK +RN+C+Y
Sbjct: 78 GLSQQCAICGDRATGKHYGAASCDGCKGFFRRSARKNHLYTCRFNRNCVVDKDKRNQCRY 137
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVES------TSGTLI--EMPVERILEAEQR 164
CR +KC GMK+EAVQ ER R R + ES + G+L+ EM ++ A ++
Sbjct: 138 CRLRKCFKAGMKKEAVQNERDRISCRRPSYEESNQNNGLSVGSLLNAEMLSRQVGAALEQ 197
Query: 165 VDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
M P D D+ N Q A+ ++C + +QL LV+WAK+IP FT L L+DQV LLRA
Sbjct: 198 --MGSTPVNDYDLSNRQLASINDVCDSMKQQLLILVEWAKYIPAFTELQLDDQVALLRAH 255
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E L+ + RS+ +KD +LL + + + + + R++ ELV M E+++D
Sbjct: 256 AGEHLLLGLARRSMHLKDVLLLGNNCIITKQCP-DLSIARVGARIMDELVKPMTEVQIDD 314
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TE CL+ I+ F+P+ RGL ++ LR ++ +LE+Y + G F +LLL LP
Sbjct: 315 TEFACLKAIVFFDPNARGLSEPSRIKALRYQIQINLEDYISDRQYDSRGGFGELLLTLPP 374
Query: 342 LRSI 345
L+SI
Sbjct: 375 LQSI 378
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 54 GINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRQCVIDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S S ++ + + + A
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISIRRSSYEDSGSLSISVLTQAEAMATQYSSLSPTHSA 173
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D + +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 174 DMAMKKIATISDVCESMKQQLLVLVEWAKYIPVFCELPLDDQVALLRAHAGEHLLLGVAK 233
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RSI D +LL + E + + R+L ELV +RE+++D+ E CL+ II
Sbjct: 234 RSIPYTDFLLLGNDFII-PMHCPELEIARVATRILDELVKPLREIQIDENEYACLKAIIF 292
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 293 FDPDCKGLSDPGKVKNMRFQVQVNLEDYINDRQYDCRGRFSDILLLLPPLQSI 345
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 13/302 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK Y CR RNCIIDK +RN+C+YC
Sbjct: 32 SQH-CAICGDRATGKHYGAASCDGCKGFFRRSVRKKHEYTCRFSRNCIIDKDKRNQCRYC 90
Query: 114 RYQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
R +KC GMK EAVQ ER R R S E +S +G+ + V +L+AE ++V +
Sbjct: 91 RLRKCFKAGMKMEAVQNERDRISCRRPSYEEQSNNGS--GLSVVSLLQAEMLSRQVASLE 148
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
++ D+ +Q A ++C + +QL LV WAK+IP F+ L L+DQV LLRA E L+
Sbjct: 149 LGSEIDLSTKQIANINDVCDSMKEQLLVLVQWAKYIPAFSELTLDDQVALLRAHAGEHLL 208
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSA----HEAGVGGIFDRVLTELVSKMREMKMDKTE 283
+ RS+ ++D +LL + ++ + + + RV+ ELV + E+++D TE
Sbjct: 209 LGVARRSMQLQDVLLLGNNCIITKNCPEGRNQDLDISKVGIRVMDELVKPLNEVQIDDTE 268
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
CL+ I+ F+P+ +GL Q ++ LR ++ +LE+Y + GRF ++LL LP+L+
Sbjct: 269 FACLKAIVFFDPNAKGLSEPQRIKQLRYQIQINLEDYISDRQYDSRGRFGEILLTLPALQ 328
Query: 344 SI 345
SI
Sbjct: 329 SI 330
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 180/294 (61%), Gaps = 10/294 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAELLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIIPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL L S
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLSS 343
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|391333983|ref|XP_003741389.1| PREDICTED: transcription factor HNF-4 homolog [Metaseiulus
occidentalis]
Length = 648
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 178/287 (62%), Gaps = 4/287 (1%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC+IDK +RN+C+Y
Sbjct: 250 GGSHFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFHRNCVIDKDKRNQCRY 309
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE--QRVDMKQE 170
CR +KC GM++EAVQ ER R R + ++ + + ++ ++ A+ R +
Sbjct: 310 CRLRKCFRAGMRKEAVQNERDRISCRRPSYEDTGALAAQGLSLQCLVTADIHSRNNSAGY 369
Query: 171 PADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
DQDI ++ A ++C + +QL LV+WAK +P F+ L L+DQV LLRA E L+
Sbjct: 370 EHDQDIQTKKIAKLGDVCDSMKQQLLVLVEWAKSLPCFSELHLDDQVALLRAHAGEHLLL 429
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+ RS++VKD +LL + R++ EA + I RV+ EL+ +RE+ +D TE CL+
Sbjct: 430 GVARRSMAVKDVLLLGNDFLMPRNTPQEADLSCIGARVMDELIIPLREVHVDDTEFACLK 489
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
I+ F+P+ RGL ++ LR +V T LE+Y + GRF ++
Sbjct: 490 AIVFFDPNARGLSEPNKIKALRHQVQTCLEDYINDRQYDSRGRFGEI 536
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 160
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 193/317 (60%), Gaps = 6/317 (1%)
Query: 31 SHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 90
+ N +S S S PN + + LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+
Sbjct: 35 TMGNDTSPSEGASLNAPNSLVVSA--LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNH 92
Query: 91 SYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTL 150
Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S+ ++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSI 152
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTT 208
+ +L Q+++ + DI ++ A+ ++C++ +QL LV+WAK+IP F
Sbjct: 153 TALLQAEVL--SQQINSPISGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCE 210
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
LPL+DQV LLRA E L+ + RS+ KD +LL V R A + + R+L
Sbjct: 211 LPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILD 270
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELV +E+++D E CL+ II F+PD +GL ++ LR +V SLE+Y +
Sbjct: 271 ELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDS 330
Query: 329 PGRFAKLLLRLPSLRSI 345
GRF +LLL LP+L+SI
Sbjct: 331 RGRFGELLLLLPTLQSI 347
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPSKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 160
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 191/325 (58%), Gaps = 9/325 (2%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLC--GSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
NN+ ++ S + I+ N L G LCSICGDRA+GKHYG SC+GCKGFF+
Sbjct: 36 NNNEEANGRCSMPAETITAESANTNLLNNGIGSLCSICGDRATGKHYGASSCDGCKGFFR 95
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
R+VRK+ Y+CR R C+IDK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 96 RSVRKNHVYSCRFSRQCVIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYE 155
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWA 200
++ S + + V EA + + P DI ++ AT ++C++ +QL LV+WA
Sbjct: 156 DNGS---LSISVLTQAEAMAQQYLPLSPVHSADIAMKKVATINDVCESMKQQLLVLVEWA 212
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
K+IP F LPL+DQV LLRA E L+ + RSI D +LL + E +
Sbjct: 213 KYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFII-PMHCPELEIA 271
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
+ R+L ELV +R++++D E CL+ II F+PD +GL V+ +R +V +LE+Y
Sbjct: 272 RVATRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQVNLEDY 331
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
+ GRF+ +LL LP L+SI
Sbjct: 332 INDRQYDSRGRFSDILLLLPPLQSI 356
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 196/329 (59%), Gaps = 21/329 (6%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
+ G++ S N S+ +S+ G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 TMGNDTSPSEGTNLSAPNSL-----------GVSALCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMPVERILEAE---QRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQL 196
+S+ + + +L+AE Q++ + DI ++ A+ ++C++ +QL L
Sbjct: 144 YEDSSLPS-----INALLQAEVLSQQITSPVSGINGDIRAKKIASIADVCESMKEQLLVL 198
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL V R
Sbjct: 199 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPEL 258
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
A + + R+L ELV +E+++D E CL+ II F+PD +GL ++ LR +V S
Sbjct: 259 AEMSRVSMRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVS 318
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LE+Y + GRF +LLL LP+L+SI
Sbjct: 319 LEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 180/296 (60%), Gaps = 7/296 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 65 GIGSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFSRQCVIDKDKRNQCRY 124
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ ++ S + + V EA + + P
Sbjct: 125 CRLKKCFRAGMKKEAVQNERDRISIRRSSYEDNGS---LSISVLTQAEAMAQQYLPLSPV 181
Query: 173 -DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
DI ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 182 HSADIAMKKVATINDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLG 241
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+ RSI D +LL + E + + R+L ELV +R++++D E CL+
Sbjct: 242 VAKRSIPYTDFLLLGNDFII-PMHCPELEIARVATRILDELVKPLRDIQIDDNEYACLKA 300
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
II F+PD +GL V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 301 IIFFDPDCKGLSEPGKVKNMRFQVQVNLEDYINDRQYDSRGRFSDILLLLPPLQSI 356
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 160
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIIPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 180/296 (60%), Gaps = 7/296 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 54 GVNSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCRFSRQCVIDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ E I + + A+Q ++ P
Sbjct: 114 CRLKKCFRAGMKKEAVQNERDRISIRRSS-YEDNGALSITILTQAEAMAQQYSALR--PV 170
Query: 173 -DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
DI ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 171 HSADIAMKKIATINDVCESMKQQLLILVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLG 230
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+ RS+ D +LL + E + + R+L ELV +RE+++D+ E CL+
Sbjct: 231 VAKRSLPYTDFLLLGNDFII-PMQCPELEIARVATRILDELVKPLREIQIDENEYACLKA 289
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+ F+PD +GL V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 290 IVFFDPDCKGLSEPSKVKNMRFQVQVNLEDYINDRQYDSRGRFSDILLLLPPLQSI 345
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 180/293 (61%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK+ Y+CR R CI+DK +RN+C+Y
Sbjct: 54 GVSSLCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYSCRFNRQCIVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R + S ++ + L + +
Sbjct: 114 CRLKKCFRAGMKKEAVQNERDRISTRRNTFDGCNSPSISTLSQAETLSRQISISSPSAST 173
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D + +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 174 DISVKKIAGVSDVCESMKQQLLVLVEWAKYIPGFCELPLDDQVALLRAHAGEHLLLGAAK 233
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS++ KD +LL ++R+S E + + +R+L ELV +E+++D E CL+ I+
Sbjct: 234 RSMAYKDILLLGNNYIIHRNST-EMEICRVANRILDELVRPFQEIQIDDNEYACLKAIVF 292
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL + ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 293 FDPDAKGLSNPLKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 193/317 (60%), Gaps = 6/317 (1%)
Query: 31 SHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 90
+ N +S S S PN + + LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+
Sbjct: 35 TMGNDTSPSEGASLNAPNSLVVSA--LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNH 92
Query: 91 SYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTL 150
Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S+ ++
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSI 152
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTT 208
+ +L Q+++ + DI ++ A+ ++C++ +QL LV+WAK+IP F
Sbjct: 153 TALLQAEVL--SQQINSPISGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCE 210
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
LPL+DQV LLRA E L+ + RS+ KD +LL V R A + + R+L
Sbjct: 211 LPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILD 270
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELV +E+++D E CL+ II F+PD +GL ++ LR +V SLE+Y +
Sbjct: 271 ELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDS 330
Query: 329 PGRFAKLLLRLPSLRSI 345
GRF +LLL LP+L+SI
Sbjct: 331 RGRFGELLLLLPTLQSI 347
>gi|195473133|ref|XP_002088850.1| GE10817 [Drosophila yakuba]
gi|194174951|gb|EDW88562.1| GE10817 [Drosophila yakuba]
Length = 703
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 185/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 199
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---- 172
KC GMK+EAVQ ER R R ++ + G + V +++AE + A
Sbjct: 200 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAAMET 257
Query: 173 --DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 258 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 317
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 318 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 377
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 378 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 437
Query: 344 SI 345
SI
Sbjct: 438 SI 439
>gi|7305147|ref|NP_038948.1| hepatocyte nuclear factor 4-gamma [Mus musculus]
gi|4914655|emb|CAB43724.1| hepatocyte nuclear factor 4 gamma [Mus musculus]
gi|116138605|gb|AAI25520.1| Hepatocyte nuclear factor 4, gamma [Mus musculus]
gi|148673275|gb|EDL05222.1| hepatocyte nuclear factor 4, gamma [Mus musculus]
Length = 418
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 17 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 76
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 77 CRLRKCFRAGMKKEAVQNERDRISTRRSTYEGSNIPSINTLAQAEVRSCQISVPSPSSST 136
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D +I +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 137 DINIKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 196
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL+ I+
Sbjct: 197 RSMMYKDILLLGNHYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 255
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 256 FDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 308
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 187/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+ LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+Y
Sbjct: 46 GAGSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +++A+ PA
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALIQADVLSRQITSPA 160
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 PILNGDIRTKKIATITDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R+ E VG + R+L ELV +E+++D E CL
Sbjct: 221 LGAAKRSMLYKDILLLGNDYIIPRNCP-ELEVGRVALRILDELVLPFQELQIDDNEYACL 279
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 280 KAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 337
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIIPRHCPELAEMNRVSVRILDELVLPFQELQVDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 187/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+ LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+Y
Sbjct: 47 GTGSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRY 106
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +++A+ PA
Sbjct: 107 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALIQADVLSRQITSPA 161
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ D+ ++ A T++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 162 PILNGDVRTKKIAAITDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLL 221
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R+ E VG + R+L ELV +E+++D E CL
Sbjct: 222 LGAAKRSMLYKDVLLLGNDYIIPRNCP-ELEVGRVAVRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|57116108|gb|AAW33563.1| hepatic nuclear factor 4beta [Gallus gallus]
Length = 459
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 190/325 (58%), Gaps = 9/325 (2%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLC--GSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
NN+ ++ S + I+ N L G LCSICGDRA+GKHYG SC+GCKGFF+
Sbjct: 27 NNNEEANGRCSMPAETITAESANTNLLNNGIGSLCSICGDRATGKHYGASSCDGCKGFFR 86
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
R VRK+ Y+CR R C+IDK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 87 RIVRKNHVYSCRFSRQCVIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYE 146
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEPA-DQDIVNEQQAT--NICKATDKQLFQLVDWA 200
++ S + + V EA + + P DI ++ AT ++C++ +QL LV+WA
Sbjct: 147 DNGS---LSISVLTQAEAMAQQYLPLSPVHSADIAMKKVATINDVCESMKQQLLVLVEWA 203
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
K+IP F LPL+DQV LLRA E L+ + RSI D +LL + E +
Sbjct: 204 KYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFII-PMHCPELEIA 262
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
+ R+L ELV +R++++D E CL+ II F+PD +GL V+ +R +V +LE+Y
Sbjct: 263 RVATRILDELVKPLRDIQIDDNEYACLKAIIFFDPDCKGLSEPGKVKNMRFQVQVNLEDY 322
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
+ GRF+ +LL LP L+SI
Sbjct: 323 INDRQIDSRGRFSDILLLLPPLQSI 347
>gi|10720045|sp|Q9WUU6.2|HNF4G_MOUSE RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
Length = 408
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTYEGSNIPSINTLAQAEVRSCQISVPSPSSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D +I +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINIKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNHYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIIPRHCPELAEMNRVSVRILDELVLPFQELQVDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|345793141|ref|XP_544134.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Canis lupus
familiaris]
Length = 446
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 179/293 (61%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 45 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + I + V
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEIRSRQISVSSPGAST 164
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F+ LPL+DQV LLRA E L+ +
Sbjct: 165 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGEHLLLGATK 224
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 225 RSMVYKDILLLGNNYVIHRNSS-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 283
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 336
>gi|426235662|ref|XP_004011799.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Ovis aries]
Length = 446
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 1/310 (0%)
Query: 36 SSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
S++SS+ N G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR
Sbjct: 28 SNDSSVPETTSMNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR 87
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S S ++ +
Sbjct: 88 FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQ 147
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+ + V AD ++ ++C++ +QL LV+WAK+IP F LPL+DQV
Sbjct: 148 AEVRSRQISVSSPGASADINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQV 207
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LLRA E L+ + RS+ KD +LL ++R+S E + + +RVL ELV +
Sbjct: 208 ALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQ 266
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
E+++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +L
Sbjct: 267 EIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGEL 326
Query: 336 LLRLPSLRSI 345
LL LP+L+SI
Sbjct: 327 LLLLPTLQSI 336
>gi|296480539|tpg|DAA22654.1| TPA: hepatocyte nuclear factor 4, gamma [Bos taurus]
Length = 425
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 1/310 (0%)
Query: 36 SSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
S++SS+ N G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR
Sbjct: 7 SNDSSVPETTSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR 66
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S S ++ +
Sbjct: 67 FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQ 126
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+ + V AD ++ ++C++ +QL LV+WAK+IP F LPL+DQV
Sbjct: 127 AEVRSRQISVSSPGASADINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQV 186
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LLRA E L+ + RS+ KD +LL ++R+S E + + +RVL ELV +
Sbjct: 187 ALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQ 245
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
E+++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +L
Sbjct: 246 EIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGEL 305
Query: 336 LLRLPSLRSI 345
LL LP+L+SI
Sbjct: 306 LLLLPTLQSI 315
>gi|74180629|dbj|BAE25549.1| unnamed protein product [Mus musculus]
Length = 418
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 17 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 76
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 77 CRLRKCFRAGMKKEAVQNERGRISTRRSTYEGSNIPSINTLAQAEVRSCQISVPSPSSST 136
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D +I +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 137 DINIKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 196
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL+ I+
Sbjct: 197 RSMMYKDILLLGNHYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 255
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 256 FDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 308
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 192/318 (60%), Gaps = 15/318 (4%)
Query: 34 NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 93
NG+ +S P N G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK+ Y
Sbjct: 36 NGNDSSG--EPLNMNATDSGISSLCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYT 93
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER----DSNEVESTSGT 149
CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R D + S S
Sbjct: 94 CRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNTFDGCNIPSIS-- 151
Query: 150 LIEMPVERILEAEQRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFT 207
+ + +++ + A DI ++ A +++C++ +QL LV+WAK+IP F
Sbjct: 152 ----TLSQAETLSRQISISSPGASTDINAKKIAGISDVCESMKQQLLVLVEWAKYIPGFC 207
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
LPL+DQV LLRA E L+ + RS++ KD +LL ++R+S E + + +R+L
Sbjct: 208 ELPLDDQVALLRAHAGEHLLLGAAKRSMAYKDILLLGNNYIIHRNST-EVEISRVANRIL 266
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
ELV +E+++D E CL+ I+ F+PD +GL + ++ +R +V SLE+Y +
Sbjct: 267 DELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSNPMKIKNMRYQVQISLEDYINDRQYD 326
Query: 328 EPGRFAKLLLRLPSLRSI 345
GRF +LLL LP+L+SI
Sbjct: 327 SRGRFGELLLLLPTLQSI 344
>gi|345793143|ref|XP_003433716.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Canis lupus
familiaris]
Length = 408
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 179/293 (61%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + I + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEIRSRQISVSSPGAST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F+ LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMVYKDILLLGNNYVIHRNSS-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|301788566|ref|XP_002929700.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Ailuropoda
melanoleuca]
Length = 455
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 179/293 (61%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGAST 173
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 174 DINVKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 233
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 234 RSMVYKDILLLGNNYVIHRNSS-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 292
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 293 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|194760751|ref|XP_001962596.1| GF14359 [Drosophila ananassae]
gi|190616293|gb|EDV31817.1| GF14359 [Drosophila ananassae]
Length = 735
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 168 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYC 227
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 228 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS--VISLVKAENESRQSKAGAA 285
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP ++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 286 MEPNINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEH 345
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMD 280
L+ S RS+ +KD +LL+ + R + + I R++ ELV M+++ +D
Sbjct: 346 LLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVVVMKDVGID 405
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP
Sbjct: 406 DTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILP 465
Query: 341 SLRSI 345
L+SI
Sbjct: 466 VLQSI 470
>gi|195115900|ref|XP_002002494.1| GI12430 [Drosophila mojavensis]
gi|193913069|gb|EDW11936.1| GI12430 [Drosophila mojavensis]
Length = 715
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 170 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYC 229
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 230 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVVSLVKAENESRQSKAGAA 287
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP ++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 288 MEPNINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNDLQLDDQVALLRAHAGEH 347
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMD 280
L+ S RS+ +KD +LL+ + R + + I R++ ELV M+++ +D
Sbjct: 348 LLLGLSRRSMHLKDVLLLSNNCVITRHCPDPHVSPNLDISRIGARIIDELVVVMKDVGID 407
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP
Sbjct: 408 DTEFACIKALVFFDPNAKGLNEPNRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILP 467
Query: 341 SLRSI 345
L+SI
Sbjct: 468 VLQSI 472
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 187/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+ LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+Y
Sbjct: 46 GAGSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +++A+ PA
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALIQADVLSRQITSPA 160
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 PILNGDIRTKKIAAITDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R+ E VG + R+L ELV +E+++D E CL
Sbjct: 221 LGAAKRSMLFKDVLLLGNDYIIPRNCP-ELEVGRVAVRILDELVLPFQELQIDDNEYACL 279
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 280 KAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDYINDRQYDCRGRFGELLLLLPTLQSI 337
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 235 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYC 294
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 295 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVVSLVKAENESRQSKAGAA 352
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP +D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 353 MEPNIHEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEH 412
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMD 280
L+ S RS+ +KD +LL+ + R + + I R++ ELV M+++ +D
Sbjct: 413 LLLGLSRRSMQLKDVLLLSNNCVITRHCPDPHVSPNLDISRIGARIIDELVVVMKDVGID 472
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
+TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP
Sbjct: 473 ETEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILP 532
Query: 341 SLRSI 345
L+SI
Sbjct: 533 VLQSI 537
>gi|354471113|ref|XP_003497788.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cricetulus
griseus]
Length = 455
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 187/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR---VDMKQ 169
CR +KC GMK+EAVQ ER R R S + G+ I + + +AE R + +
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRS----TFDGSNIP-SINTLAQAEVRSRQISVPS 168
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A+ DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 169 PSANTDINVKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 228
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL
Sbjct: 229 LGATKRSMIYKDILLLGNNYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACL 287
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 288 KAIVFFDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 193/329 (58%), Gaps = 21/329 (6%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
+ GS+ S N ++++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 26 AMGSDTSPSEAANLNTSNSI-----------GVSALCAICGDRATGKHYGASSCDGCKGF 74
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 75 FRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 134
Query: 142 EVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQA--TNICKATDKQLFQL 196
+S+ + + +L+AE P + DI ++ A ++C++ +QL L
Sbjct: 135 YEDSSLPS-----INALLQAEVLAQQISSPVLVMNGDIRGKKIANIADVCESMKQQLLVL 189
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 190 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSMVFKDVLLLGNDHIIPRNCPEL 249
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
V + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V S
Sbjct: 250 VEVSRVAIRILDELVLPFQELQIDDNEYVCLKAIIFFDPDAKGLSDPSKIKRMRYQVQVS 309
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LE+Y + GRF +LLL LP L+SI
Sbjct: 310 LEDYINDRQYDSRGRFGELLLLLPVLQSI 338
>gi|157822005|ref|NP_001102409.1| hepatocyte nuclear factor 4-gamma [Rattus norvegicus]
gi|149048503|gb|EDM01044.1| hepatocyte nuclear factor 4, gamma (predicted) [Rattus norvegicus]
Length = 418
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 186/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 17 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 76
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR---VDMKQ 169
CR +KC GMK+EAVQ ER R R S + GT I + + +AE R + +
Sbjct: 77 CRLRKCFRAGMKKEAVQNERDRISTRRS----TYEGTNIP-SINTLAQAEVRSCQISVPN 131
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 132 PSASTDINVKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 191
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL
Sbjct: 192 LGATKRSMMYKDILLLGNHYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACL 250
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 251 KAIVFFDPDAKGLSDPGKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 308
>gi|45430043|ref|NP_991380.1| hepatocyte nuclear factor 4-gamma [Bos taurus]
gi|32454393|gb|AAP82998.1| hepatocyte nuclear factor 4gamma [Bos taurus]
Length = 425
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 1/310 (0%)
Query: 36 SSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
S++SS+ N G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR
Sbjct: 7 SNDSSVPETTSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR 66
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S S ++ +
Sbjct: 67 FSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQ 126
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+ + V AD ++ ++C++ +QL LV+WAK+IP F LPL+DQV
Sbjct: 127 AEVRSRQISVSSPCASADINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQV 186
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LLRA E L+ + RS+ KD +LL ++R+S E + + +RVL ELV +
Sbjct: 187 ALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQ 245
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
E+++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +L
Sbjct: 246 EIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGEL 305
Query: 336 LLRLPSLRSI 345
LL LP+L+SI
Sbjct: 306 LLLLPTLQSI 315
>gi|281348540|gb|EFB24124.1| hypothetical protein PANDA_019943 [Ailuropoda melanoleuca]
Length = 446
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 179/293 (61%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 45 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGAST 164
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 165 DINVKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 224
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 225 RSMVYKDILLLGNNYVIHRNSS-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 283
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 336
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 194/319 (60%), Gaps = 17/319 (5%)
Query: 34 NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 93
NG+ +S P N G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK+ Y
Sbjct: 95 NGNDSSG--EPLNMNATDSGISSLCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYT 152
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKER----DSNEVESTSGT 149
CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R D + S S T
Sbjct: 153 CRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRNTFDGCNIPSIS-T 211
Query: 150 LIEMPVERILEAEQR-VDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHF 206
L + EA R + + A DI ++ A +++C++ +QL LV+WAK+IP F
Sbjct: 212 LSQA------EALSRQISVSSPGASTDINAKKIAGISDVCESMKQQLLVLVEWAKYIPGF 265
Query: 207 TTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRV 266
LPL+DQV LLRA E L+ + RS++ KD +LL ++R+S E + + +R+
Sbjct: 266 CELPLDDQVALLRAHAGEHLLLGAAKRSMAYKDILLLGNNYIIHRNST-EVEISRVANRI 324
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
L ELV +E+++D E CL+ I+ F+PD +GL + ++ +R +V SLE+Y
Sbjct: 325 LDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSNPVKIKNMRYQVQISLEDYINDRQY 384
Query: 327 EEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 385 DSRGRFGELLLLLPTLQSI 403
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 181/292 (61%), Gaps = 6/292 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R+C++DK +RN+C+YCR K
Sbjct: 61 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCRFNRHCVVDKDKRNQCRYCRLGK 120
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C GMK+EAVQ ER R R + E S + + V ++ AE D D+
Sbjct: 121 CFKAGMKKEAVQNERDRISSRRPSYEEPVSANGLTISV--LINAETMSRQLSAVNDYDLN 178
Query: 178 NEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
+++ AT ++C++ +QL LV+WAK+IP F+ LPL+DQV LLRA E L+ + RS+
Sbjct: 179 SKRMATINDVCESMKQQLLFLVEWAKYIPVFSELPLDDQVALLRAHAAENLVLGVARRSM 238
Query: 236 SVKDGILLAPGVTVYRSSA--HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
++D +LL + R SA E + I R++ E+V +R+++MD TE CL+ I+ F
Sbjct: 239 HLRDILLLGNDSIMPRQSAGLGEIEIYHIGIRIMDEIVKPLRDIQMDDTEYTCLKAIVFF 298
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+P+ +GL V+ +R ++ LE+Y GRF +LLL LP L+S+
Sbjct: 299 DPNAKGLGEPARVKGIRYQIQQLLEDYVADRQYASRGRFGELLLALPPLQSV 350
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 192/320 (60%), Gaps = 12/320 (3%)
Query: 31 SHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 90
+ N +S S ++ PN G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+
Sbjct: 35 TMGNDASPSEGVNLNAPNS--LGVGPLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNH 92
Query: 91 SYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTL 150
Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S+ +
Sbjct: 93 MYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS- 151
Query: 151 IEMPVERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPH 205
+ +L+AE Q++ + DI ++ A ++C++ +QL LV+WAK+IP
Sbjct: 152 ----INALLQAEVLSQQITSPISGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPA 207
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F LPL+DQV LLRA E L+ + RS+ KD +LL V R + + R
Sbjct: 208 FCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELVEMSRVAVR 267
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V SLE+Y
Sbjct: 268 ILDELVQPFQELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQVQVSLEDYINDRQ 327
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 328 YDSRGRFGELLLLLPTLQSI 347
>gi|444705874|gb|ELW47258.1| Hepatocyte nuclear factor 4-gamma [Tupaia chinensis]
Length = 497
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 186/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR---VDMKQ 169
CR +KC GMK+EAVQ ER R R S + G+ I + + +AE R + +
Sbjct: 115 CRLRKCFRAGMKKEAVQNERDRISTRRS----TFDGSNIP-SINTLAQAEVRSRQISVSS 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 PGASTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL
Sbjct: 230 LGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACL 288
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 KAIVFFDPDAKGLSDPMKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 346
>gi|195398447|ref|XP_002057833.1| GJ17882 [Drosophila virilis]
gi|194141487|gb|EDW57906.1| GJ17882 [Drosophila virilis]
Length = 679
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 138 SPTVCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYC 197
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMK 168
R +KC GMK+EAVQ ER R R ++ + G + V +++AE +
Sbjct: 198 RLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVVSLVKAENESRQSKAGAA 255
Query: 169 QEP-ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
EP ++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E
Sbjct: 256 MEPNINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEH 315
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMD 280
L+ S RS+ +KD +LL+ + R + + I R++ ELV M+++ +D
Sbjct: 316 LLLGLSRRSMHLKDVLLLSNNCVITRHCPDPHVSPNLDISRIGARIIDELVVVMKDVGID 375
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
TE C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP
Sbjct: 376 DTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILP 435
Query: 341 SLRSI 345
L+SI
Sbjct: 436 VLQSI 440
>gi|196011894|ref|XP_002115810.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
gi|190581586|gb|EDV21662.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
Length = 327
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 175/293 (59%), Gaps = 7/293 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VR++ Y CR GR+C+IDK +RN+C+YCR +K
Sbjct: 5 CAICGDRATGKHYGAPSCDGCKGFFRRSVRQNHVYTCRFGRSCVIDKDKRNQCRYCRLKK 64
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ--- 174
C GMK+EAVQ ER R R S + S E+ +L AE + P +
Sbjct: 65 CFRAGMKKEAVQSERDRISRRPSEDQSGGS----ELTCSTLLAAELLSQPQSSPPRECSL 120
Query: 175 DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
D++ +IC++ +QL LV+WAK+IP F L L+DQV LLRA E L+ + RS
Sbjct: 121 DVIRMASVNDICESMRQQLLLLVEWAKYIPSFCELLLDDQVTLLRAHACEHLMLGVARRS 180
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
+ +K+ +LL + + R E + I R++ EL M +D TE CL+ I+ FN
Sbjct: 181 MRLKNILLLGNDLILPRHLPEEPEIARIACRIMDELCLPMLTHNIDDTEYACLKAIVFFN 240
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
PD +GL ++ LR ++ +LE+Y + GRF ++LL LP+L SI +
Sbjct: 241 PDAKGLNEPMKIKRLRFQIQLALEDYINDRQYDSRGRFGEMLLLLPNLHSIAM 293
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 199/330 (60%), Gaps = 24/330 (7%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
S G++ +S + S+++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 26 SIGTDTSTSDVTSLSASNSI-----------GINSLCAICGDRATGKHYGASSCDGCKGF 74
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 75 FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 134
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +++AE Q++ + DI ++ A ++C + +QL
Sbjct: 135 YEDSS------LPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLLV 188
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 189 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCP- 247
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
E VG + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 248 ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 307
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF +LLL LP+L+SI
Sbjct: 308 SLEDYINDRQYDSRGRFGELLLLLPTLQSI 337
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 199/330 (60%), Gaps = 24/330 (7%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
S G++ +S + S+++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 SIGTDTSTSDVTSLSASNSI-----------GINSLCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +++AE Q++ + DI ++ A ++C + +QL
Sbjct: 144 YEDSS------LPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLLV 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 198 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCP- 256
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
E VG + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 257 ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 316
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF +LLL LP+L+SI
Sbjct: 317 SLEDYINDRQYDSRGRFGELLLLLPTLQSI 346
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 193/325 (59%), Gaps = 12/325 (3%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 85
N + N +S S ++ PN G LC+ICGDRA+GKHYG SC+GCKGFF+R+
Sbjct: 30 NVQVLTMGNDASPSEGVNLNAPNS--LGVGPLCAICGDRATGKHYGASSCDGCKGFFRRS 87
Query: 86 VRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES 145
VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S
Sbjct: 88 VRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDS 147
Query: 146 TSGTLIEMPVERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWA 200
+ + + +L+AE Q++ + DI ++ A ++C++ +QL LV+WA
Sbjct: 148 SLPS-----INALLQAEVLSQQITSPISGINGDIRAKKIANIADVCESMKEQLLVLVEWA 202
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
K+IP F LPL+DQV LLRA E L+ + RS+ KD +LL V R +
Sbjct: 203 KYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELVEMS 262
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
+ R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V SLE+Y
Sbjct: 263 RVAVRILDELVQPFQELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQVQVSLEDY 322
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 323 INDRQYDSRGRFGELLLLLPTLQSI 347
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 199/342 (58%), Gaps = 22/342 (6%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+V+ N+ ++S + S N SSNS G LC+ICGDRA+GK
Sbjct: 1 MVSVNAPLGAPVASPYDTSPSEGANLNSSNS------------LGVSALCAICGDRATGK 48
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAV
Sbjct: 49 HYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 108
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQEPADQDIVNEQQA--T 183
Q ER R R S+ +S+ + + +L+AE Q++ + DI ++ A T
Sbjct: 109 QNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPISGINGDIRAKKIANIT 163
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 164 DVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLL 223
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
V R A + + R+L ELV +E+++D E CL+ II F+PD +GL
Sbjct: 224 GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDP 283
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 GKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|410987323|ref|XP_003999954.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Felis
catus]
Length = 446
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 45 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + I + V
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEIRSRQISVSSPGAST 164
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 165 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 224
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 225 RSMVYKDILLLGNNYVIHRNSS-EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 283
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 336
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 198/330 (60%), Gaps = 24/330 (7%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
S G++ +S + S+++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 SIGTDTSTSDVTSLSASNSI-----------GINSLCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +++AE Q++ + DI ++ A ++C + +QL
Sbjct: 144 YEDSS------LPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLLV 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 198 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCP- 256
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
E VG + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 257 ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 316
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF LLL LP+L+SI
Sbjct: 317 SLEDYINDRQYDSRGRFGDLLLLLPTLQSI 346
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|148515000|gb|ABQ81862.1| ultraspiracle, partial [Plutella xylostella]
Length = 250
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 164/250 (65%), Gaps = 27/250 (10%)
Query: 77 GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK 136
GCKGFFKRTVRKDL+YACRE RNCIIDKRQRNRCQYCRYQKCL GMKREAVQEERQR
Sbjct: 1 GCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQKCLACGMKREAVQEERQRAA 60
Query: 137 E--RDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP-------ADQDIVNEQQA--TNI 185
D++ S L E+ +ER+LE E V E D ++ +A +++
Sbjct: 61 RGAEDAHPSSSIQIVLQELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPRYRAPVSSL 120
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-------K 238
C+ +KQ+ LV WA+ IPHF+ L L+DQV+L+++ WNELL+ + + RS+
Sbjct: 121 CQIGNKQIAALVVWARDIPHFSQLELDDQVVLIKSCWNELLLFAIAWRSMEYLEDERENA 180
Query: 239 DG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
DG + L PG+T++R+SA AGVG IFDRVL+EL KMR ++MD+ E L+
Sbjct: 181 DGSRSSAPPQLMCLMPGMTLHRNSALLAGVGQIFDRVLSELSMKMRALRMDQAEYVALKA 240
Query: 290 IILFNPDVRG 299
IIL NPDV+G
Sbjct: 241 IILLNPDVKG 250
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 199/342 (58%), Gaps = 22/342 (6%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+V+ N+ ++S + S N SSNS G LC+ICGDRA+GK
Sbjct: 1 MVSVNAPLGAPVASPYDTSPSEGANLNSSNS------------LGVSALCAICGDRATGK 48
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAV
Sbjct: 49 HYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 108
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQEPADQDIVNEQQA--T 183
Q ER R R S+ +S+ + + +L+AE Q++ + DI ++ A T
Sbjct: 109 QNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPISGINGDIRAKRIANIT 163
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 164 DVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLL 223
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
V R A + + R+L ELV +E+++D E CL+ II F+PD +GL
Sbjct: 224 GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDP 283
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 GKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|25012937|gb|AAN71555.1| RH29074p, partial [Drosophila melanogaster]
Length = 738
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 185/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG S +GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 175 VCAICGDRATGKHYGASSFDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 234
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 235 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 292
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 293 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 352
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 353 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 412
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 413 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 472
Query: 344 SI 345
SI
Sbjct: 473 SI 474
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 197/344 (57%), Gaps = 21/344 (6%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+ N+ G S S+ G N + G S + S P+ G C+ICGD+A+GK
Sbjct: 15 VANYCEGLDPSYSTLGFENAEVFYGGGDSMPTEPSLPGPD----GVTTNCAICGDKATGK 70
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYG SC+GCKGFF+R++RK Y CR R CI+DK +RN+C++CR KC GMK+EAV
Sbjct: 71 HYGASSCDGCKGFFRRSIRKSHIYTCRFSRQCIVDKDKRNQCRFCRLNKCFRAGMKKEAV 130
Query: 129 QEERQRTKER----DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT- 183
Q ER R R DS E+ P+ + +AE P ++EQ+A
Sbjct: 131 QNERDRISSRRSIPDSQELP---------PITILAQAETLSKQITSPVGIVDMSEQKAAT 181
Query: 184 --NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
++C + +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+S +D +
Sbjct: 182 VGDVCDSMRQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLLGVAKRSMSFRDFL 241
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LL G ++R+S E + I +RVL ELV +++++D E L+ I+ F+PD + L+
Sbjct: 242 LLGNGCVIHRNSP-EPEICRIANRVLDELVQPFQDIQIDDNEYAALKAIVFFDPDAKSLR 300
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 301 NPSKIKAMRLQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 344
>gi|357631166|gb|EHJ78814.1| SXR-like nuclear receptor [Danaus plexippus]
Length = 497
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 12/301 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 78 SQH-CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYC 136
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE----QRVDMKQ 169
R +KC GMK+EAVQ ER R R + E + V +L AE + +D
Sbjct: 137 RLRKCFKAGMKKEAVQNERDRINCRRPSYEEPAQAN--GLSVVSLLNAELLSRKVIDETN 194
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
D +I N + A ++C + +QL LV+WAK+IP FT L L+DQV LLRA E L+
Sbjct: 195 NVTDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLL 254
Query: 228 ASFSHRSISVKDGILLAPGVTVYR---SSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+ RS+ ++D +LL + + + + I RV+ E+V +RE+ +D TE
Sbjct: 255 LGCARRSLHLRDVLLLGNNCIITKHHLDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEF 314
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+ F+P+ +GL Q ++ LR ++ +LE+Y + GRF +LLL LP L+S
Sbjct: 315 ACLKAIVFFDPNAKGLSQPQKIKQLRYQIQINLEDYISDRQYDGRGRFGELLLCLPPLQS 374
Query: 345 I 345
I
Sbjct: 375 I 375
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 160
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 169
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 183/294 (62%), Gaps = 2/294 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+ LC+ICGDRA+GKHYG SC+GCKGFF+R++RK+ Y CR R CI+DK +RN+C+Y
Sbjct: 56 GANGLCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCRFSRQCIVDKDKRNQCRY 115
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-P 171
CR +KC GMK+EAVQ ER R R S S+S ++ + +L + V P
Sbjct: 116 CRLKKCFRAGMKKEAVQNERDRISTRRSTSEGSSSPSINTLAQAEVLSRQISVSSPSAGP 175
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
D ++ ++IC++ +QL LV+WAK+IP F L L+DQV LLRA E L+ +
Sbjct: 176 TDINVKKIAGISDICESMKQQLLVLVEWAKYIPAFCDLRLDDQVALLRAHAGEHLLLGAA 235
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
RS+ KD ILL ++R+S+ E + + +R+L E++ +E+++D E CL+ I+
Sbjct: 236 KRSMVYKDIILLGNDFIIHRNSS-EIEISRVANRILDEIIHPFQEIQIDDNEYACLKAIV 294
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL + + +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 295 FFDPDAKGLSNSMKIRNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 348
>gi|395855283|ref|XP_003800096.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Otolemur garnettii]
Length = 446
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 186/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 45 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR---VDMKQ 169
CR +KC GMK+EAVQ ER R R S + G+ I + + +AE R + +
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISTRRS----TFDGSNIP-SINTLAQAEVRSRQISVSS 159
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 160 PGASTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 219
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL
Sbjct: 220 LGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACL 278
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 279 KAIVFFDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 336
>gi|354493671|ref|XP_003508963.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 3
[Cricetulus griseus]
Length = 439
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 145 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 205 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 264
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 265 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 160
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 198/335 (59%), Gaps = 30/335 (8%)
Query: 16 GANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSC 75
GA+S + +N +++SH S LC+ICGDRA+GKHYG SC
Sbjct: 28 GADSSPAESANMNAASHLAAGS-------------------LCAICGDRATGKHYGASSC 68
Query: 76 EGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135
+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+YCR +KC GMK+EAVQ ER R
Sbjct: 69 DGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRI 128
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQA--TNICKATD 190
R S+ +S+ + + +++A+ PA + DI ++ A T++C++
Sbjct: 129 STRRSSYEDSSLPS-----INALIQADVLSRQITSPAPILNGDIRTKKIATITDVCESMK 183
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL +
Sbjct: 184 QQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSMLYKDILLLGNDHIIP 243
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ E VG + R+L ELV +E+++D E CL+ I+ F+PD +GL ++ +R
Sbjct: 244 RNCP-ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMR 302
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 303 YQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 337
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 159
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 160 ISGINGDIRAKRIASITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 219
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 220 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 279
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 280 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 197/330 (59%), Gaps = 23/330 (6%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
+ G++ S N ++++SI G+ LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 AIGNDTSPSEAANLNASNSI-----------GASVLCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +L+AE Q++ DI ++ A ++C++ +QL
Sbjct: 144 YEDSS------LPSINVLLQAEVLSQQISSPMSVITGDIRGKKIANIADVCESMKQQLLV 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 198 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGAAKRSMVFKDILLLGNDHIIPRNCPE 257
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+ + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 258 LLEISRVAVRILDELVLTFQELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMRYQVQV 317
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF +LLL LP+L+SI
Sbjct: 318 SLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|6016234|sp|P79926.1|HNF4B_XENLA RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta;
AltName: Full=Nuclear receptor subfamily 2 group A
member 3
gi|1771970|emb|CAA89991.1| hepatocyte nuclear factor 4 beta (HNF4 beta) [Xenopus laevis]
Length = 446
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 180/298 (60%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ YACR R CI+DK +RN+C+Y
Sbjct: 45 GINSFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYACRFSRQCIVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ ++ S + + + +AE V +
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISMRRSSYEDNGS-----LSINVLTQAEAMVHQYSPVS 159
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA L+
Sbjct: 160 PVHSSDISMKKVASISDVCESMKQQLLLLVEWAKYIPAFCELPLDDQVALLRAHAGAHLL 219
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + E + + R+L ELV +RE+++D E CL
Sbjct: 220 LGVAKRSLPYKDFLLLGNDF-IMPMHCPELEIARVPCRILDELVKPLREIQIDDNEYVCL 278
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL Q V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 279 KAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDYINDRQFDSRGRFSDILLLLPPLQSI 336
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 143
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 144 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 204 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 263
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 264 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 179/297 (60%), Gaps = 12/297 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C++DK +RN+C+YCR +K
Sbjct: 53 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCRFNRMCVVDKDKRNQCRYCRLKK 112
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C GMK+EAVQ ER R R ++ + +G + V ++ AE ++P
Sbjct: 113 CFRAGMKKEAVQNERDRISSRRTSYEDPGAGG--PLSVSALMNAEILSRQVEKPFGISTP 170
Query: 172 ---ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
D +IC++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 171 LSGGDPHSKKIAMINDICESMKQQLLILVEWAKYIPTFCELPLDDQVALLRAHAGEHLLL 230
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+ RS+++KD +LL + R+S E V I RVL ELV + E+ +D +E CL+
Sbjct: 231 GVARRSMALKDCLLLGNDFIIPRNSP-EIEVSRIACRVLDELVKPLVEVAIDDSEFACLK 289
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ F+PD +GL + ++ +R +V +LE+Y E RF ++LL LP+L+SI
Sbjct: 290 ALVFFDPDAKGLSERGKIKSMRYQVQLNLEDYINDRQYESSRRFGEILLLLPTLQSI 346
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|410987325|ref|XP_003999955.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Felis
catus]
Length = 408
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + I + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEIRSRQISVSSPGAST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S+ E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMVYKDILLLGNNYVIHRNSS-EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 159
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 160 ISGINGDIRAKRIASITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 219
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 220 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 279
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 280 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 181/298 (60%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 22 GVSTLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRY 81
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L AE P
Sbjct: 82 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLHAEALAQQISSPV 136
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 137 PVLNGDIRGKKIANISDVCESMKQQLLVLVEWAKYIPPFCELPLDDQVALLRAHAGEHLL 196
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + R+ V + R+L ELV +E+++D E CL
Sbjct: 197 LGAAKRSMVFKDVLLLGNDHIIPRNCPELVEVNRVAIRILDELVLPFQELQIDDNEYACL 256
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP L+SI
Sbjct: 257 KAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPVLQSI 314
>gi|348588691|ref|XP_003480098.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cavia porcellus]
Length = 455
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 177/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + I + V
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEIRSRQISVSSPGAST 173
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 174 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 233
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 234 RSMMYKDILLLGNNYVIHRNSC-EIEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 292
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 293 FDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|156399521|ref|XP_001638550.1| predicted protein [Nematostella vectensis]
gi|156225671|gb|EDO46487.1| predicted protein [Nematostella vectensis]
Length = 323
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 184/292 (63%), Gaps = 4/292 (1%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C IC DRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR RNC+I+K +RN+C++CR +K
Sbjct: 1 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRNQCRFCRLRK 60
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C GMK+EAVQ ER ++ E + T + E IL + + I
Sbjct: 61 CFRAGMKKEAVQNERDSISKKPKEEKKYGLTTQSLLSAE-ILSRPASSPPGTKTLLKSIC 119
Query: 178 NEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI 235
E++A ++IC++ +QL LV+WAKH+P F LPL+DQV LLRA +E L+ S RS+
Sbjct: 120 LEKEANYSDICESMRQQLLILVEWAKHLPCFCELPLDDQVALLRAHASEHLVLGVSRRSL 179
Query: 236 SVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP 295
++KD +LL + + R A + V I R+L E+V MR++ +D E CL+ I+ FNP
Sbjct: 180 NLKDILLLGNDLVIPR-QAGDTEVRKIATRILDEIVLPMRQLNIDDVEYSCLKAIVFFNP 238
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
D +GL Q ++ LR ++ T+LE+Y + E G+F ++LL LP+L++I +
Sbjct: 239 DAKGLGDSQKIKALRFEIQTTLEDYISDHQYECRGKFGEILLLLPTLQAIAL 290
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 197/330 (59%), Gaps = 23/330 (6%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
+ G++ S N ++++SI G+ LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 AIGNDTSPSEAANLNASNSI-----------GASVLCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +L+AE Q++ DI ++ A ++C++ +QL
Sbjct: 144 YEDSS------LPSINVLLQAEVLSQQISSPMSVITGDIRGKKIANIADVCESMKQQLLV 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 198 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGAAKRSMVFKDILLLGNDHIIPRNCPE 257
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+ + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 258 LLEISRVAVRILDELVLTFQELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMRYQVQV 317
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF +LLL LP+L+SI
Sbjct: 318 SLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 184/302 (60%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 128 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 187
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 188 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 245
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ +Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 246 NINEDLSTKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 305
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ ++D +LL+ + R + + I R++ ELV M+++ +D TE
Sbjct: 306 GLSRRSMHLRDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVVVMKDVGIDDTE 365
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 366 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 425
Query: 344 SI 345
SI
Sbjct: 426 SI 427
>gi|148228957|ref|NP_001081539.1| hepatocyte nuclear factor 4-beta [Xenopus laevis]
gi|125859019|gb|AAI29598.1| LOC397902 protein [Xenopus laevis]
Length = 455
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 180/299 (60%), Gaps = 13/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G C+ICGDRA+GKHYG SC+GCKGFF R+VRK+ YACR R CI+DK +RN+C+Y
Sbjct: 54 GINSFCAICGDRATGKHYGASSCDGCKGFFLRSVRKNHVYACRFSRQCIVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ ++ S + + + +AE V + P
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISMRRSSYEDNGS-----LSINVLTQAEAMVH-QYSPV 167
Query: 173 ----DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA L
Sbjct: 168 SPVHSSDISMKKVASISDVCESMKQQLLLLVEWAKYIPAFCELPLDDQVALLRAHAGAHL 227
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL + E + + R+L ELV +RE+++D E C
Sbjct: 228 LLGVAKRSLPYKDFLLLGNDF-IMPMHCPELEIARVACRILDELVKPLREIQIDDNEYVC 286
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL Q V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 287 LKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDYINDRQFDSRGRFSDILLLLPPLQSI 345
>gi|122938528|gb|ABM69088.1| hepatocyte nuclear factor 4 alpha 9 [Rattus norvegicus]
Length = 356
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 200/343 (58%), Gaps = 24/343 (6%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+V+ N+ ++S + S N SSNS G LC+ICGDRA+GK
Sbjct: 1 MVSVNAPLGAPVASPYDTSPSEGANLNSSNS------------LGVSALCAICGDRATGK 48
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAV
Sbjct: 49 HYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 108
Query: 129 QEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA-- 182
Q ER R R S+ +S+ +P + +L+AE Q++ + DI ++ A
Sbjct: 109 QNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSPISGINGDIRAKRIASI 162
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+ + RS+ KD +L
Sbjct: 163 TDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLL 222
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L V R A + + R+L ELV +E+++D E CL+ II F+PD +GL
Sbjct: 223 LGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSD 282
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 283 PGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|354493673|ref|XP_003508964.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 4
[Cricetulus griseus]
Length = 449
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 145 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 205 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 264
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 265 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 143
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 144 ISGINGDIRAKRIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 204 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 263
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 264 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|338728283|ref|XP_001490847.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Equus
caballus]
Length = 446
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 45 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S+ ++ + + + +
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISTRRSTYDGSSIPSINTLAQAEVRSRQISISSPGVST 164
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 165 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 224
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+ EA + + +RVL ELV +E+++D E CL+ I+
Sbjct: 225 RSMMYKDILLLGNNYVIHRNGC-EAEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 283
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 284 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 336
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKRIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 143
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 144 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 204 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 263
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 264 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 145 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 205 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 264
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 265 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 145 SGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 205 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 264
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 265 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPI 144
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 145 SGINGDIRAKRIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 204
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 205 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 264
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 265 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 184/295 (62%), Gaps = 5/295 (1%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+ LC+ICGDRA+GKHYG SC+GCKGFF+R VRK+ Y+CR R CI+DK +RN+C+Y
Sbjct: 46 GTGTLCAICGDRATGKHYGASSCDGCKGFFRRGVRKNHMYSCRFSRQCIVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ ++ + +L +++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSFPSINALIQADVL--SRQISSPGPIM 163
Query: 173 DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+ DI ++ A T++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 164 NGDIRTKKMATITDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGA 223
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ RS+ KD +LL V R+ E V + R+L ELV +E+++D E CL+ I
Sbjct: 224 AKRSMLYKDLLLLGNDHIVARNCP-ELEVSRVAVRILDELVLPFQELQIDDNEYACLKAI 282
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 283 VFFDPDAKGLSDPSKIKRIRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 337
>gi|90025357|gb|ABD85142.1| SXR-like nuclear receptor [Lymantria dispar]
Length = 424
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 12/301 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+H C+ICGDRA+GKHYG SC+GCK FF+R+VRK+ Y CR RNC++DK +RN+C+YC
Sbjct: 20 SQH-CAICGDRATGKHYGASSCDGCKDFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYC 78
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE----QRVDMKQ 169
R +KC GMK+EAVQ ER R R + E T + V +L AE + +D
Sbjct: 79 RLRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQAN--GLSVVSLLNAELLSRKVIDETN 136
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
D +I N + A ++C + +QL LV+WAK+IP FT L L+DQV LLRA E L+
Sbjct: 137 NVTDAEINNRKLAKINDVCDSIKQQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLL 196
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAH---EAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+ RS+ + D +LL + + + + + I RV+ E+V +RE+ +D TE
Sbjct: 197 LGCARRSLHLNDILLLGNNCIITKHNIDGRMDIDISMIGMRVIDEIVKPLREIDIDDTEF 256
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
C++ I+ F+P+ +GL Q ++ LR ++ +LE+Y + GRF +LLL LP L+S
Sbjct: 257 ACVKAIVFFDPNAKGLSQPQKIKQLRYQIQINLEDYISDRQYDGRGRFGELLLCLPPLQS 316
Query: 345 I 345
I
Sbjct: 317 I 317
>gi|122938530|gb|ABM69089.1| hepatocyte nuclear factor 4 alpha 9 [Mus musculus]
Length = 350
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 27 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 86
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 87 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 140
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 141 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 200
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 201 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 260
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 261 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 319
>gi|395739787|ref|XP_002819236.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Pongo abelii]
Length = 445
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D +I ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINIKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|222431983|gb|ACM50918.1| HNF4alpha12 [Rattus norvegicus]
Length = 353
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 143
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 144 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 204 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 263
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 264 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|291388149|ref|XP_002710691.1| PREDICTED: hepatocyte nuclear factor 4, gamma [Oryctolagus
cuniculus]
Length = 455
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 185/298 (62%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR---VDMKQ 169
CR +KC GMK+EAVQ ER R R S + G+ I + + +AE R + +
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRS----TFDGSNIP-SINTLAQAEVRSRQISVPS 168
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
A DI ++ A ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 169 PGASTDINVKKIAGIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 228
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL
Sbjct: 229 LGATKRSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACL 287
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 288 KAIVFFDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|222431989|gb|ACM50921.1| HNF4alpha12 [Mus musculus]
Length = 353
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 30 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 89
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 90 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 143
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 144 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 204 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 263
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 264 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 322
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 183/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPV 160
Query: 170 EPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A ++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E CL
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|122938532|gb|ABM69090.1| hepatocyte nuclear factor 4 alpha 3 [Rattus norvegicus]
gi|122938534|gb|ABM69091.1| hepatocyte nuclear factor 4 alpha 3 [Mus musculus]
Length = 358
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 35 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 94
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 95 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 148
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 149 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 208
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 209 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 268
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 269 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 327
>gi|402878525|ref|XP_003902931.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Papio
anubis]
Length = 445
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|115583654|ref|NP_004124.4| hepatocyte nuclear factor 4-gamma [Homo sapiens]
gi|190691697|gb|ACE87623.1| hepatocyte nuclear factor 4, gamma protein [synthetic construct]
gi|325495495|gb|ADZ17353.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 445
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|332827154|ref|XP_528171.3| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
troglodytes]
gi|397522594|ref|XP_003831346.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
paniscus]
gi|426359948|ref|XP_004047216.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Gorilla
gorilla gorilla]
Length = 445
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 alpha (HNF4alpha4) [Homo sapiens]
gi|1588510|prf||2208436A hepatocyte nuclear factor 4:ISOTYPE=alpha
Length = 504
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 195/337 (57%), Gaps = 23/337 (6%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
SGG +S S G + S N + NS G LC+ICGDRA+GKHYG
Sbjct: 59 SGGVDS-SPQGDTSPSEGTNLNAPNS------------LGVSALCAICGDRATGKHYGAS 105
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 106 SCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 165
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKA 188
R R S+ +S+ + + +L+AE P + DI ++ A+ ++C++
Sbjct: 166 RISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCES 220
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 221 MKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYI 280
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V R A + + R+L ELV +E+++D E L+ II F+PD +GL ++
Sbjct: 281 VPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKR 340
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 341 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 377
>gi|332240662|ref|XP_003269505.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Nomascus leucogenys]
Length = 445
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|112820305|gb|ABI24014.1| Rxr1 [Oikopleura dioica]
Length = 239
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 171/284 (60%), Gaps = 49/284 (17%)
Query: 65 ASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124
ASGKHYGV+SCEGCKGFFKRTVRK+L Y CR+ ++C IDKRQRNRCQYCRYQKCL GMK
Sbjct: 1 ASGKHYGVFSCEGCKGFFKRTVRKNLKYTCRDEKSCAIDKRQRNRCQYCRYQKCLLAGMK 60
Query: 125 REAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATN 184
+EAVQ+ER+R + E L EMPV ILEAE+ + + E
Sbjct: 61 KEAVQDERKRPAAEEDFE-----NPLDEMPVVDILEAEREYNGQAE-------------- 101
Query: 185 ICKATDKQLFQL--VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
F L + WA IPHF TL DQ +L++ + ELLI +F+
Sbjct: 102 ---------FHLRHIKWASRIPHFKTLSYHDQKVLIKTAYTELLILNFA----------- 141
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVL-TELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
+ + + + +R L +++++K+R++++D+TE G L+ IIL NPD RGL+
Sbjct: 142 -------FDQTKASSPQTMVLERYLSSDVMTKIRQIQLDETERGALKAIILLNPDSRGLQ 194
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ V +REK+Y SLE Y + E GRFA++LLRLP+LRSI
Sbjct: 195 FPETVLSIREKLYASLEAYCKSTFPERKGRFARILLRLPALRSI 238
>gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 516
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 195/337 (57%), Gaps = 23/337 (6%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
SGG +S S G + S N + NS G LC+ICGDRA+GKHYG
Sbjct: 71 SGGVDS-SPQGDTSPSEGTNLNAPNS------------LGVSALCAICGDRATGKHYGAS 117
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 118 SCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 177
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKA 188
R R S+ +S+ + + +L+AE P + DI ++ A+ ++C++
Sbjct: 178 RISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCES 232
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 233 MKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYI 292
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V R A + + R+L ELV +E+++D E L+ II F+PD +GL ++
Sbjct: 293 VPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKR 352
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 353 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 389
>gi|301620547|ref|XP_002939634.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Xenopus
(Silurana) tropicalis]
Length = 453
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 195/324 (60%), Gaps = 19/324 (5%)
Query: 27 NHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTV 86
N S S GS+N + + G +C+ICGDRA+GKHYG SC+GCKGFF+R++
Sbjct: 36 NDSDSSPEGSANMNSLDN--------GINSMCAICGDRATGKHYGASSCDGCKGFFRRSI 87
Query: 87 RKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVEST 146
RK Y+CR R CI+DK +RN+C+YCR +KC GMK+EAVQ ER R R S +
Sbjct: 88 RKCHVYSCRFSRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRKS----AF 143
Query: 147 SGTLIEMPVERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAK 201
G++I + + +AE +++ A+ +I ++ A +++C++ +QL LV+WAK
Sbjct: 144 EGSIIP-SINTLSQAEVLSRQITASSPDANTEINTKKIASISDVCESMKEQLLVLVEWAK 202
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
+IP F LPL+DQV LLRA E L+ + RS+ KD + L ++R+ + E +
Sbjct: 203 YIPAFCELPLDDQVALLRAHAGEQLLLGVTKRSMVFKDILFLGNNYVIHRNCS-EMEISR 261
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
+ RVL ELV +E+++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y
Sbjct: 262 VASRVLDELVLPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPIKIKTMRYQVQISLEDYI 321
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 322 NDRQYDSRGRFGELLLLLPTLQSI 345
>gi|154757671|gb|AAI51654.1| HNF4G protein [Bos taurus]
Length = 408
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 177/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V A
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGASA 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E + +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHSLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQLSLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|216409716|dbj|BAH02295.1| hepatocyte nuclear factor 4, gamma [Homo sapiens]
Length = 408
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRSSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMIYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 193/329 (58%), Gaps = 22/329 (6%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
+ GS+ S N ++++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 26 AMGSDTSPSEAANLNTSNSI-----------GVSALCAICGDRATGKHYGASSCDGCKGF 74
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 75 FRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 134
Query: 142 EVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQA--TNICKATDKQLFQL 196
+S+ + + +L+AE P + DI ++ A ++C++ +QL L
Sbjct: 135 YEDSSLPS-----INVLLQAEVLAQQISSPVLVMNGDIRGKKIANIADVCESMKQQLLVL 189
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL V R+
Sbjct: 190 VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSMVFKDVLLLGNDHIVPRNCPEL 249
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
V + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V S
Sbjct: 250 VEV-RVAIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRMRYQVQVS 308
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LE+Y + GRF +LLL LP L+SI
Sbjct: 309 LEDYINDRQYDSRGRFGELLLLLPVLQSI 337
>gi|119607446|gb|EAW87040.1| hepatocyte nuclear factor 4, gamma, isoform CRA_a [Homo sapiens]
Length = 445
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMIYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|385298694|ref|NP_001245284.1| hepatocyte nuclear factor 4-alpha isoform g [Homo sapiens]
gi|119596329|gb|EAW75923.1| hepatocyte nuclear factor 4, alpha, isoform CRA_c [Homo sapiens]
Length = 467
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 195/337 (57%), Gaps = 23/337 (6%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
SGG +S S G + S N + NS G LC+ICGDRA+GKHYG
Sbjct: 22 SGGVDS-SPQGDTSPSEGTNLNAPNS------------LGVSALCAICGDRATGKHYGAS 68
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 69 SCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 128
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKA 188
R R S+ +S+ + + +L+AE P + DI ++ A+ ++C++
Sbjct: 129 RISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCES 183
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 184 MKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYI 243
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V R A + + R+L ELV +E+++D E L+ II F+PD +GL ++
Sbjct: 244 VPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKR 303
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 304 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 340
>gi|355698038|gb|EHH28586.1| Hepatocyte nuclear factor 4-gamma [Macaca mulatta]
gi|355779768|gb|EHH64244.1| Hepatocyte nuclear factor 4-gamma [Macaca fascicularis]
Length = 445
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSI 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|297299621|ref|XP_001087848.2| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 2 [Macaca
mulatta]
Length = 455
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSI 173
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 174 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 233
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 234 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 292
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 293 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|397511217|ref|XP_003825975.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 3 [Pan
paniscus]
Length = 467
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/337 (40%), Positives = 195/337 (57%), Gaps = 23/337 (6%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
SGG +S S G + S N + NS G LC+ICGDRA+GKHYG
Sbjct: 22 SGGVDS-SPQGDTSPSEGTNLNAPNS------------LGVSALCAICGDRATGKHYGAS 68
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 69 SCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 128
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKA 188
R R S+ +S+ + + +L+AE P + DI ++ A+ ++C++
Sbjct: 129 RISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCES 183
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 184 MKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYI 243
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V R A + + R+L ELV +E+++D E L+ II F+PD +GL ++
Sbjct: 244 VPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKR 303
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 304 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 340
>gi|390475727|ref|XP_002759056.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Callithrix
jacchus]
Length = 445
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVTSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPIKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|332827156|ref|XP_003339197.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827190|ref|XP_003339198.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Pan troglodytes]
gi|332827194|ref|XP_003311815.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Pan
troglodytes]
gi|397522596|ref|XP_003831347.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Pan
paniscus]
gi|397522598|ref|XP_003831348.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 3 [Pan
paniscus]
gi|397522600|ref|XP_003831349.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 4 [Pan
paniscus]
gi|402878527|ref|XP_003902932.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Papio
anubis]
gi|426359950|ref|XP_004047217.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Gorilla
gorilla gorilla]
gi|160110004|sp|Q14541.3|HNF4G_HUMAN RecName: Full=Hepatocyte nuclear factor 4-gamma; Short=HNF-4-gamma;
AltName: Full=Nuclear receptor subfamily 2 group A
member 2
gi|33096752|emb|CAE11875.1| hypothetical protein [Homo sapiens]
gi|85397490|gb|AAI05012.1| HNF4G protein [Homo sapiens]
gi|85398004|gb|AAI05010.1| HNF4G protein [Homo sapiens]
Length = 408
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|115430095|ref|NP_001068579.1| hepatocyte nuclear factor 4-gamma [Danio rerio]
gi|115313265|gb|AAI24294.1| Hepatocyte nuclear factor 4, gamma [Danio rerio]
gi|182891948|gb|AAI65580.1| Hnf4g protein [Danio rerio]
Length = 444
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 183/297 (61%), Gaps = 19/297 (6%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGD+A+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C++CR K
Sbjct: 48 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFNRQCVVDKDKRNQCRFCRLHK 107
Query: 118 CLNMGMKREAVQEERQRTKER----DSNEVESTSGTLIEMPVERILEAE---QRVDMKQE 170
C GMK+EAVQ ER R R DS+++ P+ + AE Q++
Sbjct: 108 CFRAGMKKEAVQNERDRISSRRNIQDSHDLP---------PITALAHAEALSQQITAASP 158
Query: 171 PADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
D+ ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 159 MGPADVSEKKSATISDVCESMKQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLL 218
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+ RS+S KD +LL G ++R+ E +G + +RVL ELV +++++D E L+
Sbjct: 219 GVAKRSMSYKDLLLLGNGCVIHRNCP-EPEIGRVSNRVLDELVLPFQDIQIDDNEYAALK 277
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+ F+PD + L+ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 278 AIVFFDPDAKSLRDPSKIKAMRYQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 334
>gi|403299977|ref|XP_003940746.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Saimiri boliviensis
boliviensis]
Length = 445
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 44 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 104 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVTSPGSST 163
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 164 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 223
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 224 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 282
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 283 FDPDAKGLSDPIKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 118 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 178 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 232
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 233 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 292
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 293 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 352
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 353 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 410
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 118 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 177
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 178 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 232
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 233 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 292
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 293 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 352
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 353 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 410
>gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sapiens]
Length = 455
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 160
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 192/337 (56%), Gaps = 22/337 (6%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVY 73
SGG G + S N + NS G LC+ICGDRA+GKHYG
Sbjct: 71 SGGMGRSPPQGXTSPSEGTNLNAPNS------------LGVSALCAICGDRATGKHYGAS 118
Query: 74 SCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133
SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER
Sbjct: 119 SCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 178
Query: 134 RTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKA 188
R R S+ +S+ + + +L+AE P + DI ++ A+ ++C++
Sbjct: 179 RISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCES 233
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
+QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 234 MKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYI 293
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
V R A + + R+L ELV +E+++D E L+ II F+PD +GL ++
Sbjct: 294 VPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKR 353
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 354 LRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 390
>gi|119607447|gb|EAW87041.1| hepatocyte nuclear factor 4, gamma, isoform CRA_b [Homo sapiens]
Length = 408
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMIYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|71725341|ref|NP_001025174.1| hepatocyte nuclear factor 4-alpha isoform e [Homo sapiens]
gi|50980769|gb|AAT91237.1| hepatocyte nuclear factor 4 alpha, transcript variant 7 [Homo
sapiens]
Length = 442
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 33 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 92
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 93 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 147
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 148 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 207
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 208 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 267
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 268 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|109086735|ref|XP_001087731.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 1 [Macaca
mulatta]
Length = 408
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSI 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4-alpha isoform a [Homo sapiens]
gi|325495531|gb|ADZ17371.1| hepatocyte nuclear factor 4 4 alpha variant 1 [Homo sapiens]
Length = 464
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 196/347 (56%), Gaps = 27/347 (7%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGS---SNSSIISPYPPNHPLCGSKHLCSICGDRA 65
+ N+ G S S+ G N + G + SS+ P G C+ICGD+A
Sbjct: 17 VANYCEGLDPSYSTLGFENAEVLYGGGDNMPTESSLPGPD-------GVSSNCAICGDKA 69
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
+GKHYG SC+GCKGFF+R++RK Y CR R CI+DK +RN+C++CR KC GMK+
Sbjct: 70 TGKHYGASSCDGCKGFFRRSIRKSHVYTCRFSRQCIVDKDKRNQCRFCRLNKCFRAGMKK 129
Query: 126 EAVQEERQRTKER----DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ 181
EAVQ ER R R DS ++ P+ + +AE P ++EQ+
Sbjct: 130 EAVQNERDRISSRRNIPDSQDLP---------PITILAQAESLSQQITVPLGIADISEQK 180
Query: 182 AT---NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
+ ++C + +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+S K
Sbjct: 181 SATTGDVCDSMRQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLLGVAKRSMSFK 240
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
D +LL G ++R+S E + + +RVL ELV +++++D E L+ I+ F+PD +
Sbjct: 241 DFLLLGNGCVIHRNSP-EPEICRVANRVLDELVQPFQDIQIDDNEYAALKAIVFFDPDAK 299
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 300 SLRDPSKIKTMRLQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 346
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|1588511|prf||2208436B hepatocyte nuclear factor 4
Length = 774
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG +C+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 373 GVNCLCAICGDRATGKHYGASTCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 432
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 433 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 492
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 493 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 552
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 553 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 611
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 612 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 664
>gi|71725339|ref|NP_787110.2| hepatocyte nuclear factor 4-alpha isoform d [Homo sapiens]
gi|50980771|gb|AAT91238.1| hepatocyte nuclear factor 4 alpha, transcript variant 8 [Homo
sapiens]
gi|119596327|gb|EAW75921.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Homo sapiens]
gi|325495547|gb|ADZ17379.1| hepatocyte nuclear factor 4 4 alpha variant 4 [Homo sapiens]
Length = 452
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 33 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 92
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 93 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 147
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 148 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 207
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 208 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 267
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 268 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4-alpha isoform b [Homo sapiens]
gi|148886624|sp|P41235.3|HNF4A_HUMAN RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|119596331|gb|EAW75925.1| hepatocyte nuclear factor 4, alpha, isoform CRA_e [Homo sapiens]
gi|147883854|gb|ABQ52204.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|208966450|dbj|BAG73239.1| hepatocyte nuclear factor 4, alpha [synthetic construct]
gi|325495549|gb|ADZ17380.1| hepatocyte nuclear factor 4 4 alpha variant 2 [Homo sapiens]
Length = 474
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha,
partial [Papio anubis]
Length = 425
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 16 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 75
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 76 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 130
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 131 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 190
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 191 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 250
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 251 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 308
>gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapiens]
Length = 465
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 160
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|296226749|ref|XP_002759057.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Callithrix
jacchus]
Length = 408
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVTSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPIKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|297259762|ref|XP_001110097.2| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Macaca
mulatta]
Length = 462
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 43 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 102
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 103 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 157
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 158 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 217
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 218 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSMRILDELVLPFQELQIDDNEYAYL 277
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 278 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 335
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 4 DTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGD 63
D A + F + +MS+ S S++ N NH G+ LC+ICGD
Sbjct: 20 DPAYTTLEFENMQVLAMSTDSSPQESANMNAA------------NH--LGAGTLCAICGD 65
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
RA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+YCR +KC GM
Sbjct: 66 RATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGM 125
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT 183
K+EAVQ ER R R S+ +S+ ++ + +L +++ + DI ++ A
Sbjct: 126 KKEAVQNERDRISTRRSSYEDSSLPSINALIQADVL--SRQISSPGPILNGDIRTKKVAA 183
Query: 184 --NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +
Sbjct: 184 IMDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSMMYKDIL 243
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LL + R+ E V + R+L ELV +++++D E CL+ I+ F+PD +GL
Sbjct: 244 LLGNDHIIPRNCP-ELEVSRVAVRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLS 302
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 303 DPSKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 346
>gi|68132010|gb|AAY85271.1| HNF4gamma, partial [Danio rerio]
Length = 413
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 183/297 (61%), Gaps = 19/297 (6%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGD+A+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C++CR K
Sbjct: 29 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFNRQCVVDKDKRNQCRFCRLHK 88
Query: 118 CLNMGMKREAVQEERQRTKER----DSNEVESTSGTLIEMPVERILEAE---QRVDMKQE 170
C GMK+EAVQ ER R R DS+++ P+ + AE Q++
Sbjct: 89 CFRAGMKKEAVQNERDRISSRRNIQDSHDLP---------PITALAHAEALSQQITAASP 139
Query: 171 PADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
D+ ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 140 MGPADVSEKKSATISDVCESMKQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLL 199
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
+ RS+S KD +LL G ++R+ E +G + +RVL ELV +++++D E L+
Sbjct: 200 GVAKRSMSYKDLLLLGNGCVIHRNCP-EPEIGRVSNRVLDELVLPFQDIQIDDNEYAALK 258
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+ F+PD + L+ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 259 AIVFFDPDAKSLRDPSKIKAMRYQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 315
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 200/344 (58%), Gaps = 19/344 (5%)
Query: 4 DTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGD 63
D A + F + +MS+ S S++ N NH G+ LC+ICGD
Sbjct: 11 DPAYTTLEFENMQVLAMSTDSSPQESANMNAA------------NH--LGAGTLCAICGD 56
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
RA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +RN+C+YCR +KC GM
Sbjct: 57 RATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGM 116
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT 183
K+EAVQ ER R R S+ +S+ ++ + +L +++ + DI ++ A
Sbjct: 117 KKEAVQNERDRISTRRSSYEDSSLPSINALIQADVL--SRQISSPGPILNGDIRTKKVAA 174
Query: 184 --NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +
Sbjct: 175 IMDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSMMYKDIL 234
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LL + R+ E V + R+L ELV +++++D E CL+ I+ F+PD +GL
Sbjct: 235 LLGNDHIIPRNCP-ELEVSRVAVRILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLS 293
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 294 DPSKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 337
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 167/294 (56%), Gaps = 6/294 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 83 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 143 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 202
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 203 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 262
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTII 291
S+ + +L A G+ SA R+ E V K++ + +D E CL+ I+
Sbjct: 263 QCSMPLHVAVLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIV 322
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 323 LFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 376
>gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [Homo sapiens]
Length = 465
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 160
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVGALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQ 169
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----ITALLQAEALSQQITSPV 169
Query: 170 EPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
DI ++ A+ ++C++ +QL LV+WAK IP F LPL+DQV LLRA E L+
Sbjct: 170 PGLSGDIRAKKIASIADVCESMKQQLLVLVEWAKFIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R + + R+L ELV +E+++D E CL
Sbjct: 230 LGATKRSMVFKDVLLLGNDHIVPRHCPELVEMNRVAMRILDELVLPFQELQIDDNEYACL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDYISDRQHDSRGRFGELLLLLPALQSI 347
>gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon nigroviridis]
Length = 431
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 193/344 (56%), Gaps = 22/344 (6%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+ N+ G S S+ G N + S + P P G C+ICGD+A+GK
Sbjct: 16 VANYCEGLDPSYSTLGFENAEVFYGGDSMPTEPSLPGPD-----GVTTNCAICGDKATGK 70
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYG SC+GCKGFF+R++RK Y CR R CI+DK +RN+C++CR KC GMK+EAV
Sbjct: 71 HYGASSCDGCKGFFRRSIRKGHVYTCRFSRQCIVDKDKRNQCRFCRLNKCFRAGMKKEAV 130
Query: 129 QEERQRTKER----DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT- 183
Q ER R R DS E+ P+ + +AE P V+EQ+
Sbjct: 131 QNERDRISSRRSIPDSQELP---------PITILAQAETLSKQITTPVGMADVSEQKVAT 181
Query: 184 --NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
++C + +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ +D +
Sbjct: 182 VGDVCDSMRQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLLGVAKRSMPYRDFL 241
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
LL G ++R+S E + I +RVL ELV +++++D E L+ I+ F+PD + L+
Sbjct: 242 LLGNGCVIHRNSP-EPEISRIANRVLDELVQPFQDIQIDDNEYAALKAIVFFDPDAKSLR 300
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ ++ +R +V +LE+Y + GRF +LLL LP+L+SI
Sbjct: 301 NPSKIKTMRLQVQMNLEDYINDRQYDSRGRFGELLLLLPTLQSI 344
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 182/293 (62%), Gaps = 10/293 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +K
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKK 110
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE---QRVDMKQEPADQ 174
C GMK+EAVQ ER R R S+ +S+ + + +L+AE Q++ +
Sbjct: 111 CFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSQQITSPISGING 165
Query: 175 DIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+ +
Sbjct: 166 DIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATK 225
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL V R A + + R+L ELV +E+++D E CL+ II
Sbjct: 226 RSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIF 285
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 286 FDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 195/347 (56%), Gaps = 27/347 (7%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL---CSICGDRA 65
+ N+ G S S+ G N + G P P+HP G+ L C+ICGD+A
Sbjct: 16 VANYCEGLDPSYSTLGFENAEVLYGGGDG-----MPTEPSHP--GADGLSSNCAICGDKA 68
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
+GKHYG SC+GCKGFF+R++RK Y CR R CI+DK +RN+C++CR KC GMK+
Sbjct: 69 TGKHYGASSCDGCKGFFRRSIRKSHVYTCRFSRQCIVDKDKRNQCRFCRLNKCFRAGMKK 128
Query: 126 EAVQEERQRTKER----DSNEVESTSGTLIEMPVERILEAE---QRVDMKQEPADQDIVN 178
EAVQ ER R R DS ++ P+ + +AE Q++ D +
Sbjct: 129 EAVQNERDRISSRRSIPDSQDLP---------PITILAQAESLSQQITTPVALTDTSELK 179
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
++C + +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ K
Sbjct: 180 SASVADVCDSMRQQLLVLVEWAKYIPAFGELPLDDQVSLLRAHAGEHLLLGVAKRSMRFK 239
Query: 239 DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
D +LL G ++R+S E + + +R L ELV +++++D E L+ I+ F+PD +
Sbjct: 240 DLLLLGNGCIIHRNSP-EPEICRVANRALDELVVPFQDIQIDDNEYAALKAIVFFDPDAK 298
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 299 SLRNPSKIKAMRLQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 194/321 (60%), Gaps = 14/321 (4%)
Query: 27 NHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTV 86
N SS + + N++ NH G+ LC+ICGDRA+GKHYG SC+GCKGFF+R+V
Sbjct: 2 NDSSPQESANMNAA-------NH--LGAGTLCAICGDRATGKHYGASSCDGCKGFFRRSV 52
Query: 87 RKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVEST 146
RK+ Y+CR R CI+DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S+
Sbjct: 53 RKNHMYSCRFNRQCIVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS 112
Query: 147 SGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIP 204
++ + +L +++ + DI ++ A ++C++ +QL LV+WAK+IP
Sbjct: 113 LPSINALIQADVL--SRQISSPGPILNGDIRTKKVAAIMDVCESMKQQLLVLVEWAKYIP 170
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
F LPL+DQV LLRA E L+ + RS+ KD +LL + R+ E V +
Sbjct: 171 AFCDLPLDDQVALLRAHAGEHLLLGAAKRSMMYKDILLLGNDHIIPRNCP-ELEVSRVAV 229
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
R+L ELV +++++D E CL+ I+ F+PD +GL ++ +R +V SLE+Y
Sbjct: 230 RILDELVLPFQDLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQVQVSLEDYINDR 289
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 290 QYDSRGRFGELLLLLPTLQSI 310
>gi|5834598|emb|CAA89990.2| hepatocyte nuclear factor 4 gamma (HNF4gamma) [Homo sapiens]
Length = 408
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG +C+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASTCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|6002728|gb|AAF00110.1| hepatocyte nuclear factor 4 gamma [Homo sapiens]
Length = 408
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG +C+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASTCDGCKGFFRRSIRKSHIYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMIYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|332209102|ref|XP_003253649.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Nomascus
leucogenys]
Length = 418
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 183/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 168
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 169 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|332209104|ref|XP_003253650.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Nomascus
leucogenys]
Length = 396
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 183/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 33 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 92
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 93 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 146
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 147 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 206
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 207 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 266
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 267 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 175/298 (58%), Gaps = 10/298 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +K
Sbjct: 56 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFNRNCVVDKDKRNQCRYCRLRK 115
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP----AD 173
C GMK+EAVQ ER R R + E + + + +L E + EP +
Sbjct: 116 CFKAGMKKEAVQNERDRISSRRPSYEEQLASNVNGLSAVHLLHVEMFNRQRTEPGSPNGE 175
Query: 174 QDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
D + A+ ++C++ +QL +V WAK IP F L L+DQV LLRA E L+ +
Sbjct: 176 IDFTTMKLASIEDVCESMREQLLLMVSWAKSIPAFGELMLDDQVALLRAHAGEHLLLGVA 235
Query: 232 HRSISVKDGILLAPGVTVYRS----SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
RS+ +KD +LLA + R+ + + + RV+ ELV M ++++D TE CL
Sbjct: 236 RRSMRLKDTLLLANNCVITRTCPEGRTQDVDISRVGARVMDELVKPMNDVQIDDTEFACL 295
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+ F+ +GL V+ +R ++ +LE+Y GRF ++LL LP+L+SI
Sbjct: 296 KAIVFFDSHAQGLSEAGKVKHMRTQIQMNLEDYISDRQYHSRGRFGEILLMLPALQSI 353
>gi|49457135|emb|CAG46888.1| HNF4G [Homo sapiens]
Length = 408
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK++AVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKKAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHSGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>gi|344273185|ref|XP_003408404.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Loxodonta
africana]
Length = 455
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 182/295 (61%), Gaps = 5/295 (1%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 54 GLNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 113
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R + S ++ + +L +++ A
Sbjct: 114 CRLRKCFRAGMKKEAVQNERDRISTRRNTFDGSNIPSINTLAQAEVL--SRQISGSSPGA 171
Query: 173 DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLR E L+
Sbjct: 172 STDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRTHAGEHLLLGA 231
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ RS+ KD +LL ++R+S E + + +R+L ELV +E+++D E CL+ I
Sbjct: 232 TKRSMVYKDILLLGNNYVIHRNSC-EVEISRVANRILDELVRPFQEIQIDDNEYACLKAI 290
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 291 VFFDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 345
>gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4-alpha isoform c [Homo sapiens]
gi|119596330|gb|EAW75924.1| hepatocyte nuclear factor 4, alpha, isoform CRA_d [Homo sapiens]
gi|187952661|gb|AAI37541.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|187953631|gb|AAI37540.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 417
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 183/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 168
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 169 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [Homo sapiens]
gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 408
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 183/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 106 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 159
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 160 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 219
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 220 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 279
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 280 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 178/317 (56%), Gaps = 17/317 (5%)
Query: 44 PYPPNHPLCG------SKHL-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE 96
P PP+ P S+H+ C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR
Sbjct: 47 PGPPSTPGAAGDKTGQSQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRA 106
Query: 97 GRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG------TL 150
RNC ID+ RN+CQYCR++KCL +GM+RE VQ R + + + T+G
Sbjct: 107 NRNCPIDQHHRNQCQYCRFKKCLKVGMRRE-VQRGRMPPTQPNPGQYALTNGDPLNGHCY 165
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLP 210
+ + +L AE + N NIC+ + LF V+WA++IP F L
Sbjct: 166 LSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 225
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLT 268
+ DQV LLR W+EL + + + S+ + LLA ++ S V D R+
Sbjct: 226 ITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQ 284
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
E V K++ + +D E CL+ I+LF PD GL +E L+EK +LEEY R + +
Sbjct: 285 EQVEKLKALHVDSAEYSCLKAIVLFTPDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQ 344
Query: 329 PGRFAKLLLRLPSLRSI 345
P RF KLLLRLPSLR++
Sbjct: 345 PSRFGKLLLRLPSLRTV 361
>gi|348509753|ref|XP_003442411.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Oreochromis
niloticus]
Length = 409
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 180/303 (59%), Gaps = 25/303 (8%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G+K CSIC DRA+GKHYG SC+GCKGFF+R++R + +Y+CR R CI+DK +RN+C+Y
Sbjct: 51 GAKTQCSICADRATGKHYGAPSCDGCKGFFRRSIRNNHTYSCRFDRQCIVDKDKRNQCRY 110
Query: 113 CRYQKCLNMGMKREAVQEER-----QRTKERDSNEVESTSGTLIEMPVERILEAE---QR 164
CR +KC GM++EAVQ ER QR KE+ T GTL + +L+AE Q+
Sbjct: 111 CRLRKCFKAGMRKEAVQNERDCINSQRAKEQ-------TVGTL---SISVLLQAETTVQQ 160
Query: 165 VDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
P DI ++ A + ++ +QL LV+WAKHIP F +LP++D+V LLR
Sbjct: 161 FPALLSPRSHDITTKKTAGVGEVFESMKQQLLLLVEWAKHIPEFCSLPIDDRVTLLRTHS 220
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
E LI + RS+ + ILL + A E + + R+ ELV +RE+ +
Sbjct: 221 AEHLILGAARRSLPYNNVILLGNDFVIPLRGA-EVEISRVAFRIQEELVKPLRELVITDK 279
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CLRTI+ F PD GLKS QVV LR + + LEE T E+ GRF +LLL LP L
Sbjct: 280 EFACLRTIVFFAPDCSGLKSPQVVRHLRFQAHLLLEEAT----CEQRGRFGELLLILPPL 335
Query: 343 RSI 345
+S+
Sbjct: 336 QSV 338
>gi|71725336|ref|NP_001025175.1| hepatocyte nuclear factor 4-alpha isoform f [Homo sapiens]
gi|50980773|gb|AAT91239.1| hepatocyte nuclear factor 4 alpha, transcript variant 9 [Homo
sapiens]
Length = 395
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 183/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 33 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 92
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 93 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 146
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 147 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 206
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 207 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 266
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 267 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 325
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C ICGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 75 CVICGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 135 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 369
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 180/329 (54%), Gaps = 20/329 (6%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKR 84
NN S+ N +S S P +H+ C +CGD++SGKHYG ++CEGCK FFKR
Sbjct: 59 NNTQSTPTNQTSQQSEKQP----------QHIECVVCGDKSSGKHYGQFTCEGCKSFFKR 108
Query: 85 TVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVE 144
+VR++L+Y CR RNC ID+ RN+CQYCR +KCL +GM+REAVQ R + +
Sbjct: 109 SVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQPHHGQFA 168
Query: 145 STSG------TLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVD 198
T+G + + + +L AE + N NIC+ + LF V+
Sbjct: 169 LTNGDPLHCHSYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARMLFSAVE 228
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA++IP F L + DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 229 WARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADR 287
Query: 259 VGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
V D R+ E V K++ + +D E CL+ I+LF D GL VE L+EK +
Sbjct: 288 VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCA 347
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LEEY R + +P RF KLLLRLPSLR++
Sbjct: 348 LEEYVRSQYPNQPTRFGKLLLRLPSLRTV 376
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 136 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 195
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 196 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 255
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 256 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 314
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 315 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 370
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 81 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 141 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 200
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 201 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 260
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 261 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 319
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 320 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 375
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 136 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 195
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 196 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 255
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 256 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 314
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 315 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 370
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 147 CLKVGMRREAVQRGRMPPTQPHHGQFALTNGDPLHCHSYLSGYISLLLRAEPYPTSRYGS 206
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 207 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 266
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 267 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 325
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 326 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 381
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 75 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 135 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 369
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 146 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 205
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 206 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 265
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 266 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 324
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 325 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 380
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 169/296 (57%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR +K
Sbjct: 75 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRNQCQYCRLKK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 135 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 369
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 46 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 105
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 106 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 165
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 166 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 225
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 226 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 284
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 285 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 340
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 175/312 (56%), Gaps = 10/312 (3%)
Query: 43 SPYPPNHPLCGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI 101
+P PN +H+ C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC
Sbjct: 19 NPGGPNPAAQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCP 78
Query: 102 IDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPV 155
ID+ RN+CQYCR +KCL +GM+REAVQ R + + + T+G + +
Sbjct: 79 IDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYI 138
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+L AE + N NIC+ + LF V+WA++IP F L + DQV
Sbjct: 139 SLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQV 198
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSK 273
LLR W+EL + + + S+ + LLA ++ S V D R+ E V K
Sbjct: 199 SLLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEK 257
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
++ + +D E CL+ I+LF D GL +E L+EK +LEEY R + +P RF
Sbjct: 258 LKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFG 317
Query: 334 KLLLRLPSLRSI 345
KLLLRLPSLR++
Sbjct: 318 KLLLRLPSLRTV 329
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 75 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 135 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 369
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 73 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 132
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 133 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 192
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 193 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 252
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 253 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 311
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 312 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 367
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 373
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 45 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 104
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 105 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 164
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 165 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 224
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 225 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 283
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 284 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 339
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 373
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 146 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 205
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 206 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 265
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 266 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 324
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 325 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 380
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 223 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 282
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 283 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 342
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 343 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 402
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 403 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 461
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 462 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 517
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 83 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 143 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 202
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 203 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 262
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 263 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 321
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 322 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 377
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 147 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 206
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 207 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 266
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 267 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 325
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 326 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 381
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 85 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 145 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 204
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 205 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 264
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 265 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 323
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 324 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 379
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 146 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 205
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 206 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 265
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 266 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 324
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 325 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 380
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 85 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 145 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 204
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 205 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 264
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 265 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 323
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 324 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 379
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 186/350 (53%), Gaps = 21/350 (6%)
Query: 16 GANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHP-LCGSK----------HL-CSICGD 63
G N + H ++ + + P PP+ P G K H+ C +CGD
Sbjct: 22 GPNPAAQPAREQHQAASAAPHTPQTPSQPGPPSTPGTAGDKGSQNSGQSQQHIECVVCGD 81
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR +KCL +GM
Sbjct: 82 KSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRNQCQYCRLKKCLKVGM 141
Query: 124 KREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEPADQDIV 177
+REAVQ R + + + T+G + + +L AE +
Sbjct: 142 RREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPN 201
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
N NIC+ + LF V+W+++IP F L + DQV LLR W+EL + + + S+ +
Sbjct: 202 NIMGIENICELAARLLFSAVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPL 261
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNP 295
LLA ++ S V D R+ E V K++ + +D E CL+ I+LF
Sbjct: 262 HVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTS 320
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 370
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 167/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 61 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 120
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 121 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 180
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 181 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 240
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 241 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 299
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 300 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 355
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 70 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 129
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 130 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 189
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 190 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 249
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 250 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 308
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 309 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 364
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 60 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 119
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 120 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 179
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 180 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 239
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 240 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 298
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 299 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 354
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 46 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 105
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 106 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 165
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 166 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 225
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 226 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 284
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 285 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 340
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 4 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 63
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 64 CLKVGMRREAVQRGRMPPTQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 123
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 124 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 183
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 184 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 242
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 243 IVLFTSDACGLSDVTHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 298
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 81 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 141 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 200
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 201 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 260
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 261 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 319
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 320 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 375
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 17 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 76
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 77 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 136
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 137 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 196
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 197 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 255
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 256 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 311
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 169/296 (57%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 142 CLKVGMRREAVQRGRVPPTQPHHGQFALTNGDPLHCHSYLSGYISLLLRAEPYPTSRYGS 201
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 202 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 261
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 262 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 320
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL + VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 321 IVLFTTDACGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 376
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 13 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 72
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 73 CLKVGMRREAVQRGRMPPPQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 132
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 133 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 192
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 193 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 251
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 252 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 307
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 179/331 (54%), Gaps = 24/331 (7%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKR 84
NN S+ N +S S P +H+ C +CGD++SGKHYG ++CEGCK FFKR
Sbjct: 59 NNTQSTPTNQTSQQSEKQP----------QHIECVVCGDKSSGKHYGQFTCEGCKSFFKR 108
Query: 85 TVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVE 144
+VR++L+Y CR RNC ID+ RN+CQYCR +KCL +GM+REAVQ R + +
Sbjct: 109 SVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQPHHGQFA 168
Query: 145 STSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQ--------QATNICKATDKQLFQL 196
T+G + L + ++ EP Q NIC+ + LF
Sbjct: 169 LTNGDPLH--CHSYLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAARMLFSA 226
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
V+WA++IP F L + DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 227 VEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSA 285
Query: 257 AGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
V D R+ E V K++ + +D E CL+ I+LF D GL VE L+EK
Sbjct: 286 DRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQ 345
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LEEY R + +P RF KLLLRLPSLR++
Sbjct: 346 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 376
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 48 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 107
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 108 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 167
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 168 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 227
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 228 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 286
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 287 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 342
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 74 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 133
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 134 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 193
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 194 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 253
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E C++
Sbjct: 254 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKA 312
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 313 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 368
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 146 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 205
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 206 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 265
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 266 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 324
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 325 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 380
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 373
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 172/302 (56%), Gaps = 13/302 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G + C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQY
Sbjct: 15 GQQIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRNCPIDQHHRNQCQY 74
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-------VERILEAEQRV 165
CR +KCL MGM+REAVQ R R ++ T+G + P + +L AE
Sbjct: 75 CRLKKCLKMGMRREAVQ--RGRVPPNQHPQISLTNGDSLGGPHSYLSSFISLLLRAEPYP 132
Query: 166 DMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
+ Q N NIC+ + LF V+WA++IP F L + DQV LLR W+EL
Sbjct: 133 PSRYAQCVQQ-NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSEL 191
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTE 283
+ + S S+ + LLA ++ S V D R+ E V K++ +++D E
Sbjct: 192 FVLNASQCSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALQVDAAE 250
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
CL+ I+LF D GL +E L+EK +LEEY R + P RF KLLLRLPSLR
Sbjct: 251 YSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYPNRPTRFGKLLLRLPSLR 310
Query: 344 SI 345
++
Sbjct: 311 TV 312
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 136 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 195
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 196 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 255
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E C++
Sbjct: 256 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKA 314
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 315 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 370
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 11 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 70
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 71 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 130
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 131 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 190
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 191 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 249
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 250 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 305
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 45 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 104
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 105 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 164
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 165 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 224
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 225 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 283
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 284 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 339
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 22 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 81
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 82 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 141
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 142 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 201
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 202 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 260
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 261 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 316
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 168/305 (55%), Gaps = 18/305 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 111 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 170
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG---------------TLIEMPVERILEAE 162
CL +GM+REAVQ R + + + T+G L P R+L A
Sbjct: 171 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPTPRLLRAG 230
Query: 163 QRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
+ N NIC+ + LF V+WA++IP F L + DQV LLR W
Sbjct: 231 PYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTW 290
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMD 280
+EL + + + S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 291 SELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVD 349
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
E CL+ I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLP
Sbjct: 350 SAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLP 409
Query: 341 SLRSI 345
SLR++
Sbjct: 410 SLRTV 414
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 8 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 67
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 68 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 127
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 128 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 187
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 188 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 246
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 247 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 302
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 21 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 80
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 81 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 140
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 141 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 200
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 201 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 259
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 260 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 315
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 78 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 137
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 138 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 197
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 198 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 257
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 258 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 316
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 317 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 372
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 46 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 105
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ R R R S+ +S+ + + +L+AE P
Sbjct: 106 CRLKKCFRAGMKKEAVQNGRDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 160
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WA++IP F LPL+DQV LLRA E L+
Sbjct: 161 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAEYIPAFCELPLDDQVALLRAHAGEHLL 220
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 221 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 280
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 281 KAIIFFDPDAKGLSDPGRIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 338
>gi|262070643|gb|ACY08800.1| ultraspiracle, partial [Tribolium confusum]
Length = 144
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 111/145 (76%), Positives = 125/145 (86%), Gaps = 2/145 (1%)
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
RTVRKDLSYACRE +NCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTK+RD++EV
Sbjct: 1 RTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKDRDTSEV 60
Query: 144 ESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT-NICKATDKQLFQLVDWAKH 202
ESTS +MP+ERI+EAE+RV+ +P +VNE NIC+AT+KQLFQLV WAK
Sbjct: 61 ESTSNMQADMPLERIIEAEKRVECN-DPLVALVVNENTTVNNICQATNKQLFQLVQWAKL 119
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLI 227
IPHFT+LPL DQVLLLRAGWNELLI
Sbjct: 120 IPHFTSLPLSDQVLLLRAGWNELLI 144
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 175/303 (57%), Gaps = 12/303 (3%)
Query: 54 SKHL-CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
S+H+ C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR R C ID+ RN+CQY
Sbjct: 101 SQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRTCPIDQHHRNQCQY 160
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERD-------SNEVESTSG-TLIEMPVERILEAEQR 164
CR +KCL MGM+REAVQ R + +N V+ +G + + + +L AE
Sbjct: 161 CRLKKCLKMGMRREAVQRGRIPPTQHPAGAQYALTNGVDPINGHSYLSGYISLLLRAEPY 220
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ N NIC+ + LF V+WA++IP+F L + DQV LLR W+E
Sbjct: 221 PTSRYGTQCMQPNNIMGIDNICELAARLLFSAVEWARNIPYFPELQVTDQVALLRLVWSE 280
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + S S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 281 LFVLNASQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSA 339
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL ++ L+EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 340 EYSCLKAIVLFTSDACGLSDAAHIDSLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSL 399
Query: 343 RSI 345
R++
Sbjct: 400 RTV 402
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 172/284 (60%), Gaps = 7/284 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 65 GINSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRQCVIDKDKRNQCRY 124
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R N E + I + + + A Q + P
Sbjct: 125 CRLRKCFRAGMKKEAVQNERDRISIR-RNSYEDSGSLSIAILTQAEVMATQHSSIN--PT 181
Query: 173 DQ-DIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
++ D+ +++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 182 NRTDVTSKKVATISDVCESMKQQLLILVEWAKYIPVFWELPLDDQVALLRAHAGEHLLLG 241
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+ RSI D +LL + E + + R+L ELV +RE+++D E CL+
Sbjct: 242 VAKRSIPFTDFLLLGNDFIIPMHCP-ELEIARVAIRILDELVKPLREIQIDDNEYACLKA 300
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
II F+PD +GL V+ +R +V +LE+Y + GRF+
Sbjct: 301 IIFFDPDCKGLSDPGKVKRMRFQVQVNLEDYVTDRQYDSRGRFS 344
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 77 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 136
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 137 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 196
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 197 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 256
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 257 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 315
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 316 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 371
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 167/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 70 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 129
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 130 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLVLRAEPYPTSRFGS 189
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 190 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 249
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + L A ++ S V D R+ E V K++ + +D E CL+
Sbjct: 250 QCSMPLHVAPLSA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 308
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 309 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 364
>gi|126304932|ref|XP_001375141.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Monodelphis
domestica]
Length = 459
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 170/284 (59%), Gaps = 7/284 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C+IDK +RN+C+Y
Sbjct: 55 GINSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRQCVIDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R N E + I + + + A Q + P
Sbjct: 115 CRLRKCFRAGMKKEAVQNERDRISIR-RNSYEDSGSLSISILTQAEVMATQYSSIS--PM 171
Query: 173 D-QDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
+ D+ ++ AT ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 172 NGSDVATKKVATMSDVCESIKQQLLILVEWAKYIPVFCELPLDDQVALLRAHAGEHLLLG 231
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
+ RSI D +LL + E + + R+L ELV +RE+++D E CL+
Sbjct: 232 VAKRSIPYTDFLLLGNDFII-PMHCPELEIARVAIRILDELVKPLREIQIDDNEYACLKA 290
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
II F+PD +GL V+ +R +V +LE+Y + GRF+
Sbjct: 291 IIFFDPDCKGLSDPGKVKRMRFQVQVNLEDYVTDRQYDSRGRFS 334
>gi|221043464|dbj|BAH13409.1| unnamed protein product [Homo sapiens]
Length = 259
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 133/176 (75%), Gaps = 9/176 (5%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 84 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 143
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 144 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGG-APEEMPVDRILEAELAVEQKSDQGV 202
Query: 174 QDIVNEQQ--------ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+ TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 203 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 258
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 170/301 (56%), Gaps = 15/301 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY+CR RNC +D+ RN+CQYCR +K
Sbjct: 25 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYSCRGNRNCPVDQHHRNQCQYCRLKK 84
Query: 118 CLNMGMKREAVQEER-----------QRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
CL MGM+REAVQ R Q + + + G L + +L AE
Sbjct: 85 CLKMGMRREAVQRGRVPPSQHPGFPGQLSLTNGDGGLNGSHGYLSSY-ISLLLRAEPYPT 143
Query: 167 MKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ Q N NIC+ + LF V+WA++IP F L + DQV LLR W+EL
Sbjct: 144 SRYGQCMQPSNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELF 203
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTEL 284
+ + S S+ + LLA ++ S V D R+ E V K++ + +D E
Sbjct: 204 VLNASQCSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEY 262
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+LF D GL +E L+EK +LEEY R ++ +P RF KLLLRLPSLR+
Sbjct: 263 SCLKAIVLFTTDACGLSDVGHIESLQEKSQCALEEYCRTQYANQPVRFGKLLLRLPSLRT 322
Query: 345 I 345
+
Sbjct: 323 V 323
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 165/290 (56%), Gaps = 3/290 (1%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL +GM+REA+Q+ + +N + + +L AE +
Sbjct: 142 CLKVGMRREAIQQGLYPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPN 201
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + + S+ +
Sbjct: 202 NIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPL 261
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNP 295
LLA ++ S V D R+ E V K++ + +D E CL+ I+LF
Sbjct: 262 HVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 320
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 321 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 370
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 178/331 (53%), Gaps = 12/331 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
GS ++ ++ S + P + G + C +CGD++SGKHYGV++CEGCK FFK
Sbjct: 23 GSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFK 82
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER--------QRT 135
R++R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EAVQ R
Sbjct: 83 RSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAAC 142
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ VE +G + + ++L AE + ++ N+C+ + LF
Sbjct: 143 SPPGATGVEPFTGPPVSELIAQLLRAEPYPAAGRFGGGGAVLG---IDNVCELAARLLFS 199
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WA+H P F LP DQV LLR W+EL + + + ++ + LLA A
Sbjct: 200 TVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAA 259
Query: 256 EAGVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
E V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK
Sbjct: 260 ERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQ 319
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L EY R + +P RF +LLLRLP++R++
Sbjct: 320 VALTEYVRAQYPSQPQRFGRLLLRLPAMRAV 350
>gi|380861647|gb|AFF18489.1| HNF4 [Schmidtea mediterranea]
Length = 655
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 177/295 (60%), Gaps = 7/295 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+ LC IC D+A+GKHYG +SC+GCKGFF+R+VRK +Y C+ RNC +DK +RN+C+YC
Sbjct: 62 NNQLCLICSDKATGKHYGAFSCDGCKGFFRRSVRKKNNYTCQYNRNCKMDKDKRNQCRYC 121
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
R +KC+ +GMKR AVQ ER R R S+ + ++ + ++++AEQRV +++ P
Sbjct: 122 RLKKCILVGMKRAAVQNERDRISTRRSSFDDIPPNVILS--ISQLMQAEQRVAIQKPPNP 179
Query: 174 QDIVNE-QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
Q+ +N ++C++ QLF LV+WAK +P F+ L L DQ+ LL+A E+LI
Sbjct: 180 QEYMNRYADVPDVCESMKNQLFLLVNWAKSLPCFSQLNLSDQISLLKAHAGEILILGVIR 239
Query: 233 RSISV--KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
RS + D +LL + + R+S+ + I +L +L +RE+++D E CL+ I
Sbjct: 240 RSFQLDEDDVLLLGNNLIISRNSS-DKHFAEIASHILDDLFIPLRELQLDDAEFACLKAI 298
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ F+P V ++ V R ++ L + +PGRF +LLL +P LR +
Sbjct: 299 VFFDPRVSE-SGKEFVRRCRYQIQMDLMNHMNDKQYHKPGRFGELLLTIPDLRLV 352
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 169/298 (56%), Gaps = 14/298 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC +D+ RN+CQYCR +K
Sbjct: 97 CIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPVDQHHRNQCQYCRLKK 156
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL +GM+REAVQ R T+ + T+G ++ L + ++ EP
Sbjct: 157 CLKVGMRREAVQRGRIPTQSFH-GQFALTNGDPLQ--CHSYLSGYISLLLRAEPYPTSRF 213
Query: 178 NEQ--------QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
Q NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 214 GSQCLQSNNLMGIENICELAARMLFSAVEWARNIPFFPDLQVTDQVALLRLTWSELFVLN 273
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCL 287
+ S+ V LLA ++ S V D RV E V K++ + +D E C+
Sbjct: 274 AAQCSMPVHVAPLLA-AAGLHASPMSADRVVAFMDHIRVFQEQVEKLKILHVDSAEYSCI 332
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 333 KAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTV 390
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 180/335 (53%), Gaps = 26/335 (7%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKR 84
NN S+ N +S S P +H+ C +CGD++SGKHYG ++CEGCK FFKR
Sbjct: 59 NNTQSTPTNQTSQQSEKQP----------QHIECVVCGDKSSGKHYGQFTCEGCKSFFKR 108
Query: 85 TVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKRE------AVQEERQRTKER 138
+VR++L+Y CR RNC ID+ RN+CQYCR +KCL +GM+RE AVQ R +
Sbjct: 109 SVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRVPPTQP 168
Query: 139 DSNEVESTSG------TLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQ 192
+ T+G + + + +L AE + N NIC+ +
Sbjct: 169 HHGQFALTNGDPLHCHSYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARM 228
Query: 193 LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS 252
LF V+WA++IP F L + DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 229 LFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHAS 287
Query: 253 SAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
V D R+ E V K++ + +D E CL+ I+LF D GL VE L+
Sbjct: 288 PMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQ 347
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 348 EKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 382
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 168/302 (55%), Gaps = 15/302 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 118 CLNMGMKRE------AVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRV 165
CL +GM+RE AVQ R + + T+G + + + +L AE
Sbjct: 147 CLKVGMRREVSLFTAAVQRGRMPPTQPHHGQFALTNGDPLHCHSYLSGYISLLLRAEPYP 206
Query: 166 DMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
+ N NIC+ + LF V+WA++IP F L + DQV LLR W+EL
Sbjct: 207 TSRYGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSEL 266
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTE 283
+ + + S+ + LLA ++ S V D R+ E V K++ + +D E
Sbjct: 267 FVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
CL+ I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR
Sbjct: 326 YSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLR 385
Query: 344 SI 345
++
Sbjct: 386 TV 387
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 170/303 (56%), Gaps = 17/303 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR +K
Sbjct: 81 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQYCRLKK 140
Query: 118 CLNMGMKREAVQEER-------------QRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
C+ MGM+REAVQ R Q DS ++ T + + +L AE
Sbjct: 141 CMKMGMRREAVQRGRVPPSQPALPGLPNQFLNSTDSVTSSLSNHTYLSSYISLLLRAEPY 200
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ Q N NIC+ + LF V+WA++IP F L + DQV LLR W+E
Sbjct: 201 PTSRYGQCIQ-ANNIMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSE 259
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + S S+ + L+A ++ S V D R+ E V K++ + +D
Sbjct: 260 LFVLNASQCSMPLHVAPLIA-AAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSA 318
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL +E ++EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 319 EYSCLKAIVLFTTDACGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSL 378
Query: 343 RSI 345
R++
Sbjct: 379 RTV 381
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 168/303 (55%), Gaps = 16/303 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKRE-------AVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQR 164
CL +GM+RE AVQ R + + T+G + + + +L AE
Sbjct: 136 CLKVGMRREVSSLFTAAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPY 195
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ N NIC+ + LF V+WA++IP F L + DQV LLR W+E
Sbjct: 196 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSE 255
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + + S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 256 LFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSA 314
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 315 EYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSL 374
Query: 343 RSI 345
R++
Sbjct: 375 RTV 377
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 167/296 (56%), Gaps = 10/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 74 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 133
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+RE VQ R + + + T+G + + +L AE +
Sbjct: 134 CLKVGMRRE-VQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 192
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 193 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 252
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 253 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 311
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 312 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 367
>gi|313244758|emb|CBY15470.1| unnamed protein product [Oikopleura dioica]
Length = 431
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 167/291 (57%), Gaps = 48/291 (16%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C +C DRASGKHYGV+SCEGCKGFFKRTVRK+L Y CR+ ++C IDKRQRNRCQYCRYQ
Sbjct: 105 MCVVCQDRASGKHYGVFSCEGCKGFFKRTVRKNLKYTCRDEKSCTIDKRQRNRCQYCRYQ 164
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDI 176
KCL GMK+EAVQ+ER+R + E L EMPV ILEAE+ + + E
Sbjct: 165 KCLLAGMKKEAVQDERKRPAAEEDFE-----NPLDEMPVVDILEAEREYNGQAE------ 213
Query: 177 VNEQQATNICKATDKQLFQL--VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
F L + WA IPHF T SF
Sbjct: 214 -----------------FHLRHIKWASRIPHFKTF------------------CSFLTSH 238
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
++ + +L + S + I + +++++K+R++++D+TE G L+ IIL N
Sbjct: 239 LTRRRHPVLKQWCSNAISGENSMTSHLINCILSSDVMTKIRQIQLDETERGALKAIILLN 298
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
PD RGL+ + V +REK+Y SLE Y + E GRFA++LLRLP+LRSI
Sbjct: 299 PDSRGLQFPETVLSIREKLYASLEAYCKSTFPERKGRFARILLRLPALRSI 349
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 167/295 (56%), Gaps = 9/295 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 102 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 161
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG-----TLIEMPVERILEAEQRVDMKQEPA 172
CL MGM+REAVQ R + + T G + + + +L AE + A
Sbjct: 162 CLKMGMRREAVQRGRIPPTQPVPGQYALTDGRFDGHSYLSGFISLLLRAEP-YPTSRYGA 220
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
N IC+ + LF V+WA++IP F L + DQV LLR W+EL + + S
Sbjct: 221 QCMQSNMMGIDGICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMVWSELFVLNASQ 280
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTI 290
S+ + LLA ++ S V D R+ E V K++ + +D E CL+ I
Sbjct: 281 CSMPLHVAPLLA-ASGLHTSPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAI 339
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 340 VLFTSDACGLSDAAHIENLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTV 394
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 170/299 (56%), Gaps = 19/299 (6%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV +CEGCK FFKR+VR++L Y CR RNC ID+ RN+CQ+CR +K
Sbjct: 166 CGVCGDKSSGKHYGVNTCEGCKSFFKRSVRRNLQYTCRAKRNCSIDQHHRNQCQHCRLKK 225
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTS---GTLIEMPVERILEAE--------QRVD 166
CL GM+++AVQ R +++ + E + + + V +L AE Q V
Sbjct: 226 CLKAGMRKDAVQRGRLNSQQGAAQVFEDATVNNFSFLSGFVTLLLRAEPCPIFRYSQGVS 285
Query: 167 MKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI N + A + LF V+W+++IP F L L DQ+ LLR W EL
Sbjct: 286 NNPQFDFIDIDNYELAARL-------LFNAVEWSRNIPFFPNLSLTDQIALLRLCWKELF 338
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
I + + + + LL + +Y S H A R+L E ++K+R M +D E C
Sbjct: 339 ILNVAQCPMLIDVSHLLNSQMNIYASPEHMASFLDQV-RILKEQLNKLRAMHVDPAEFAC 397
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ I++F+ D GL Q +E L+EK Y +LE+Y + + +P RF KLLLR PS+R I
Sbjct: 398 LKAIVVFSSDAPGLNDPQYIETLQEKTYFALEDYIKTQYPLQPTRFGKLLLRFPSIRII 456
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 167/299 (55%), Gaps = 14/299 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG Y+CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR K
Sbjct: 79 CVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRNLSYTCRGNRNCPIDQHHRNQCQYCRLNK 138
Query: 118 CLNMGMKREAVQEERQRTKERD-------SNEVESTSGT-LIEMPVERILEAEQRVDMK- 168
C+ +GM+REAVQ R + +N VES G + + +L AE +
Sbjct: 139 CVKIGMRREAVQRGRMPPSQPHTTGQYAITNGVESNFGPGYMSGYISMLLRAEPYPTSRF 198
Query: 169 --QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
Q P I+ NIC+ + LF V+WA++IP F L + DQV +L+ W+EL
Sbjct: 199 ALQCPVPNQIMG---IDNICELAARLLFSAVEWARNIPFFPELQVTDQVAMLKWVWSELF 255
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + + + + LLA SA R+ E V +++ + +D E C
Sbjct: 256 VLNAAQSHMPLHVAPLLAAAGLHTSMSADRVMTFMDHIRIFQEQVERLKSLHVDSAEYSC 315
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ I+LF D GL +E ++EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 316 LKAIVLFTADSHGLSDMTHIESVQEKSQCALEEYVRHQYPNQPSRFGKLLLRLPSLRTV 374
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 166/293 (56%), Gaps = 7/293 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR +K
Sbjct: 141 CVVCHDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRNQCQYCRLKK 200
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV---ESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
CL MGM+REAVQ R + + T + + +L AE + Q
Sbjct: 201 CLKMGMRREAVQRGRMPPTQPGPGQYLDGRFEGHTFLSGYISLLLRAEPYPTSRYAQCMQ 260
Query: 175 DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
+ NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + S S
Sbjct: 261 -TNSVMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCS 319
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIIL 292
+ + LLA ++ S V D R+ E V K++ + +D E C++ I+L
Sbjct: 320 MPLHVAPLLA-ASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVL 378
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 379 FTSDACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTV 431
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 168/303 (55%), Gaps = 16/303 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKRE-------AVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQR 164
CL +GM+RE AVQ R + + T+G + + + +L AE
Sbjct: 139 CLKVGMRREVSPFLPAAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPY 198
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ N NIC+ + LF V+WA++IP F L + DQV LLR W+E
Sbjct: 199 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSE 258
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + + S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 259 LFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSA 317
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 318 EYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSL 377
Query: 343 RSI 345
R++
Sbjct: 378 RTV 380
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 168/303 (55%), Gaps = 17/303 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR R+C ID+ RN+CQ+CR +K
Sbjct: 80 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRSCPIDQHHRNQCQFCRLRK 139
Query: 118 CLNMGMKREAVQEER-------------QRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
CL MGM+REAVQ R Q T + + + +L AE
Sbjct: 140 CLKMGMRREAVQRGRVPPSQPPGLGLPGQFTLGNGDPGAGLNNHPYLSSYISLLLRAEPY 199
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ P Q N NIC+ + LF V+WA++IP F L + DQV LLR W+E
Sbjct: 200 PASRYSPCVQP-TNVMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSE 258
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + S S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 259 LFVLNASQCSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSA 317
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 318 EYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSL 377
Query: 343 RSI 345
R++
Sbjct: 378 RTV 380
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 167/296 (56%), Gaps = 10/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 61 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 120
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+RE VQ R + + + T+G + + +L AE +
Sbjct: 121 CLKVGMRRE-VQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 179
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 180 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 239
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 240 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 298
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 299 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 354
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 179/337 (53%), Gaps = 30/337 (8%)
Query: 26 NNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL-CSICGDRASGKHYGVYSCEGCKGFFKR 84
NN S+ N +S S P +H+ C +CGD++SGKHYG ++CEGCK FFKR
Sbjct: 59 NNTQSTPTNQTSQQSEKQP----------QHIECVVCGDKSSGKHYGQFTCEGCKSFFKR 108
Query: 85 TVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKRE------AVQEERQRTKER 138
+VR++L+Y CR RNC ID+ RN+CQYCR +KCL +GM+RE AVQ R +
Sbjct: 109 SVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRVPPTQP 168
Query: 139 DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQ--------QATNICKATD 190
+ T+G + L + ++ EP Q NIC+
Sbjct: 169 HHGQFALTNGDPLH--CHSYLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAA 226
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
+ LF V+WA++IP F L + DQV LLR W+EL + + + S+ + LLA ++
Sbjct: 227 RMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLH 285
Query: 251 RSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
S V D R+ E V K++ + +D E CL+ I+LF D GL VE
Sbjct: 286 ASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVES 345
Query: 309 LREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 346 LQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 382
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 169/302 (55%), Gaps = 15/302 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 118 CLNMGMKRE------AVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRV 165
CL +GM+RE AVQ R + + T+G + + + +L AE
Sbjct: 142 CLKVGMRREVSLFTAAVQRGRVPPTQPHHGQFALTNGDPLHCHSYLSGYISLLLRAEPYP 201
Query: 166 DMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
+ N NIC+ + LF V+WA++IP F L + DQV LLR W+EL
Sbjct: 202 TSRYGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSEL 261
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTE 283
+ + + S+ + LLA ++ S V D R+ E V K++ + +D E
Sbjct: 262 FVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
CL+ I+LF D GL + VE L+EK +LEEY R + +P RF KLLLRLPSLR
Sbjct: 321 YSCLKAIVLFTTDACGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLR 380
Query: 344 SI 345
++
Sbjct: 381 TV 382
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 168/304 (55%), Gaps = 17/304 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKRE--------AVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQ 163
CL +GM+RE AVQ R + + T+G + + + +L AE
Sbjct: 139 CLKVGMRREVCLFSSPAAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEP 198
Query: 164 RVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ N NIC+ + LF V+WA++IP F L + DQV LLR W+
Sbjct: 199 YPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWS 258
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDK 281
EL + + + S+ + LLA ++ S V D R+ E V K++ + +D
Sbjct: 259 ELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDS 317
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
E CL+ I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPS
Sbjct: 318 AEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPS 377
Query: 342 LRSI 345
LR++
Sbjct: 378 LRTV 381
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 167/296 (56%), Gaps = 10/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+RE VQ R + + + T+G + + +L AE +
Sbjct: 136 CLKVGMRRE-VQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E C++
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 369
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 169/303 (55%), Gaps = 17/303 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR NC ID+ RN+CQYCR +K
Sbjct: 81 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSTNCPIDQHHRNQCQYCRLKK 140
Query: 118 CLNMGMKREAVQEER-------------QRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
C+ MGM+REAVQ R Q DS ++ T + + +L AE
Sbjct: 141 CMKMGMRREAVQRGRVPPSQPSLPGLPNQFLNSTDSVTTSLSNHTYLSSYISLLLRAEPY 200
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ Q N NIC+ + LF V+WA++IP F L + DQV LLR W+E
Sbjct: 201 PTSRYGQCIQP-NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSE 259
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + S S+ + L+A ++ S V D R+ E V K++ + +D
Sbjct: 260 LFVLNASQCSMPLHVAPLIA-AAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSA 318
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+LF D GL +E ++EK +LEEY R + +P RF KLLLRLPSL
Sbjct: 319 EYSCLKAIVLFTTDACGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSL 378
Query: 343 RSI 345
R++
Sbjct: 379 RTV 381
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 10/297 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 72 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 131
Query: 118 CLNMGMKREAVQEER-QRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQE 170
CL +GM+REAVQ R ++ + + +G + + + +L AE +
Sbjct: 132 CLKVGMRREAVQRGRLPPSQHPNPAQYALVNGDPLNGHSYLSGYISLLLRAEPYPTSRYG 191
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 192 SQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLVWSELFVLNA 251
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLR 288
+ ++ + LLA ++ S V D R+ E V K++ + +D E C++
Sbjct: 252 AQCAMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIK 310
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 311 AIVLFTTDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 367
>gi|307191079|gb|EFN74819.1| Transcription factor HNF-4-like protein [Camponotus floridanus]
Length = 426
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 20/303 (6%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C IDK +RN+C+YCR +K
Sbjct: 23 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRLMRKCQIDKDKRNQCRYCRLRK 82
Query: 118 CLNMGMKREAVQEERQRTKER---DSNEVESTSGTLIEMPVERILEAEQRVDM-----KQ 169
C GMK+EAVQ ER R R + N+ E++ ++ E +L A + + M +
Sbjct: 83 CFRAGMKKEAVQNERDRINNRPPSNENQTENSGPSM-----EDLLMAARHIGMLELVNPK 137
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
E D ++C + +QL L++WAK I F TLPL+D+V LLRA E L+
Sbjct: 138 EDVDPSTKRIAGLNDVCDSMKEQLLILIEWAKCIKEFDTLPLDDKVALLRAHAGEHLLLG 197
Query: 230 FSHRSI--SVKDGILLAPGVTVYR-----SSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
+ RS + D +LL + R S+ + + + RV+ ELV ++++K+D T
Sbjct: 198 LARRSQIHKLTDVLLLGNDCIIMRNYPEGSNQQDLDISKVGVRVMDELVEPLKKIKIDDT 257
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E CL+ I+ F+P+ +GL + + + LR+ + LE Y G F +LL LP+L
Sbjct: 258 EFACLKAIVFFDPNAKGLSNSETIRTLRKNIQIKLENYISDYRCHLTGHFGDILLLLPAL 317
Query: 343 RSI 345
+SI
Sbjct: 318 QSI 320
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 166/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC +D+ RN+CQYCR +K
Sbjct: 54 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKK 113
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 114 CLKVGMRREAVQRGRMPPNQPNPSHYALTNGDHLNGQCYLSGYISLLLRAEPYPASRYGN 173
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 174 QCMQSGNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 233
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R E V K++ +++D E C +
Sbjct: 234 QSSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKA 292
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLP+LR +
Sbjct: 293 IVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMV 348
>gi|313219082|emb|CBY43294.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 167/291 (57%), Gaps = 48/291 (16%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C +C DRASGKHYGV+SCEGCKGFFKRTVRK+L Y CR+ ++C IDKRQRNRCQYCRYQ
Sbjct: 105 MCVVCQDRASGKHYGVFSCEGCKGFFKRTVRKNLKYTCRDEKSCTIDKRQRNRCQYCRYQ 164
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDI 176
KCL GMK+EAVQ+ER+R + E L EMPV ILEAE+ + + E
Sbjct: 165 KCLLAGMKKEAVQDERKRPAAEEDFE-----NPLDEMPVVDILEAEREYNGQAE------ 213
Query: 177 VNEQQATNICKATDKQLFQL--VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
F L + WA IPHF T SF
Sbjct: 214 -----------------FHLRHIKWASRIPHFKTF------------------CSFLTSH 238
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
++ + +L + S + I + +++++K+R++++D+TE G L+ IIL N
Sbjct: 239 LTRRRHPVLKQWCSNAISGENPMTSHLINCILSSDVMTKIRQIQLDETERGALKAIILLN 298
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
PD RGL+ + V +REK+Y SLE Y + E GRFA++LLRLP+LRSI
Sbjct: 299 PDSRGLQFPETVLSIREKLYASLEAYCKSTFPERKGRFARILLRLPALRSI 349
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 168/301 (55%), Gaps = 14/301 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQ+CR +K
Sbjct: 175 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRNCPIDQHHRNQCQFCRLRK 234
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTS----GTLIEMPVERILEAEQRVDMKQEPAD 173
CL MGM+REAVQ R + S T+ L + + ++ EP
Sbjct: 235 CLKMGMRREAVQRGRVPPSQPPGIPYGQYSIPNGDTVTGFNGHSYLSSYISLLLRAEPYP 294
Query: 174 QDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ T NIC+ + LF V+WA++IP F L + DQV LLR W+EL
Sbjct: 295 TSRYGQCMQTNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELF 354
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTEL 284
+ + S S+ + LLA ++ S V D R+ E V K++ + +D E
Sbjct: 355 VLNASQCSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEY 413
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR+
Sbjct: 414 SCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRT 473
Query: 345 I 345
+
Sbjct: 474 V 474
>gi|348512222|ref|XP_003443642.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 477
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 176/292 (60%), Gaps = 11/292 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGD+A+GKHYG SC+GCKGFF+R++RK Y CR R C++DK +RN+C++CR K
Sbjct: 57 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCRFSRQCVVDKDKRNQCRFCRLNK 116
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERIL-EAEQRVDMKQEPADQDI 176
C GMK+EAVQ ER R R S ++P IL +AE P
Sbjct: 117 CFRAGMKKEAVQNERDRISSRRSISDSQ------DLPTITILAQAESLSHQSTTPGGIAD 170
Query: 177 VNEQQAT---NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
++EQ++ +IC + +QL LV+WAK+IP F LPL+DQV LLRA E L+ + R
Sbjct: 171 LSEQKSATVGDICDSMKQQLLVLVEWAKYIPTFGELPLDDQVSLLRAHAGEHLLLGVAKR 230
Query: 234 SISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
S+ KD +LL G ++R S E + + +RVL ELV +++++D E L+ I+ F
Sbjct: 231 SMPFKDFLLLGNGCVIHRDSP-EPEICRVANRVLDELVQPFQDIQIDDNEFAALKAIVFF 289
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+PD + L+ ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 DPDAKSLRDPSKIKTMRLQVQMSLEDYINDRQYDSRGRFGELLLLLPTLQSI 341
>gi|393395464|gb|AFN08662.1| retinoid X receptor 2 [Scylla paramamosain]
Length = 236
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/193 (58%), Positives = 142/193 (73%), Gaps = 10/193 (5%)
Query: 1 MKPDTATLLVNF----NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH 56
+ PDT +LL N+ G + S ++ + +N +S S+ + YPP+HPL GSKH
Sbjct: 13 VAPDTVSLLSPAPSFSNANGGPASPSISTSPFTIGSSNTTSLSTSPTQYPPSHPLSGSKH 72
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQ
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 117 KCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQ 174
KCL+MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 133 KCLSMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ 192
Query: 175 DIVNEQQATNICK 187
+ + +N+C+
Sbjct: 193 GV----RPSNLCQ 201
>gi|378925278|dbj|BAL63407.1| retinoic X receptor beta a, partial [Solea senegalensis]
Length = 161
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 128/169 (75%), Gaps = 19/169 (11%)
Query: 119 LNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE-------- 170
L MGMKREAVQEERQR +ERD EVESTS EMPVE+ILEAE V+ K E
Sbjct: 1 LAMGMKREAVQEERQRNRERD-GEVESTSAVNEEMPVEKILEAEMAVEQKTELHADGSSG 59
Query: 171 ---PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
P D TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 60 GSSPNDP-------VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLI 112
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
ASFSHRSISVKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 113 ASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 161
>gi|195169483|ref|XP_002025551.1| GL15129 [Drosophila persimilis]
gi|194109030|gb|EDW31073.1| GL15129 [Drosophila persimilis]
Length = 359
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 168/306 (54%), Gaps = 70/306 (22%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGS--NNHSSSHNNGSSNSS---------------IIS 43
+KPD + L + NS + S G N S H S NSS
Sbjct: 19 VKPDISQLNDSNNSSFSPKAESPGPFLQNMSMVHVMPSGNSSENQGQMAQASAGGASAQQ 78
Query: 44 PYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIID
Sbjct: 79 QYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIID 138
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI------------ 151
KRQRNRCQYCRYQKCL+ GMKREAVQEERQR + + + G++
Sbjct: 139 KRQRNRCQYCRYQKCLSCGMKREAVQEERQRGARSAAGRLSAGGGSVGGGSVGSGSGGGG 198
Query: 152 ---------------------EMPVERILEAEQRVDMKQEPADQDIVNEQQATN------ 184
+ +ER+L+AEQR + + D+ + + N
Sbjct: 199 GPWGSVGGNGADEFMAFNVSRDFTIERLLDAEQRAEAQS--GDRALAFLRVGPNSTVQPD 256
Query: 185 -------ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR-----AGWNELLIASFSH 232
+C+ +KQL+Q+V++A+ +PHF LPL+DQ + + +LL+ +
Sbjct: 257 YKGAVSALCQVVNKQLYQMVEYARFMPHFAQLPLDDQHCRVEHPGDDGRFAQLLLRLPAL 316
Query: 233 RSISVK 238
RSIS+K
Sbjct: 317 RSISLK 322
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+++ RV H + GRFA+LLLRLP+LRSI +
Sbjct: 292 DQHCRVEHPGDDGRFAQLLLRLPALRSISL 321
>gi|410591545|gb|AFV74664.1| estradiol receptor-like protein 2, partial [Portunus
trituberculatus]
Length = 235
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 124/169 (73%), Gaps = 9/169 (5%)
Query: 1 MKPDTATLLV------NFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGS 54
+ PDT +LL N N G A+ S SS+ G S S YPP+HPL GS
Sbjct: 69 VAPDTVSLLSPAPSFSNANGGPASPSISTSPFTIGSSNTTGLSTSPTQ--YPPSHPLSGS 126
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCR
Sbjct: 127 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCR 186
Query: 115 YQKCLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAE 162
YQKCL+MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE
Sbjct: 187 YQKCLSMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAE 235
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 167/295 (56%), Gaps = 10/295 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR +K
Sbjct: 4 CVVCHDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRNQCQYCRLKK 63
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV---ESTSGTLIEMPVERILEAEQRVDMKQEPADQ 174
CL MGM+REAVQ R + + T + + +L AE + Q
Sbjct: 64 CLKMGMRREAVQRGRMPPTQPGPGQYLDGRFEGHTFLSGYISLLLRAEPYPTSRYAQCMQ 123
Query: 175 DIVNEQQAT-NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + S
Sbjct: 124 --TNSVMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQC 181
Query: 234 SISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTII 291
S+ + LLA ++ S V D R+ E V K++ + +D E C++ I+
Sbjct: 182 SMPLHVAPLLA-ASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIV 240
Query: 292 LF-NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
LF + D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 241 LFTSTDACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTV 295
>gi|119508140|gb|ABL75645.1| IP16932p [Drosophila melanogaster]
Length = 415
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 168/273 (61%), Gaps = 15/273 (5%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 145 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 204
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 205 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 262
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 263 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 322
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 323 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 382
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
C++ ++ F+P+ +GL ++ LR ++ +
Sbjct: 383 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNN 415
>gi|226316415|gb|ACO44671.1| retinoid X receptor isoform 4 [Crangon crangon]
Length = 225
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/160 (68%), Positives = 124/160 (77%), Gaps = 12/160 (7%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C IDK
Sbjct: 64 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDK 123
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQ-----EERQRTK-ERDSNEVESTSGTLIEMPVERI 158
RQRNRCQYCRYQKCL MGMKREAVQ EERQRTK ++ + ES+ G + +MP+ I
Sbjct: 124 RQRNRCQYCRYQKCLGMGMKREAVQVGGIEEERQRTKGDKGDGDPESSCGGISDMPITSI 183
Query: 159 LEAEQRVDMKQEPADQDIVNEQQA-TNICKATDK-QLFQL 196
EAE V EP D+ V++ A TNIC+A D+ ++F L
Sbjct: 184 HEAEIIV----EPTDEQPVDQGDAVTNICQAADRVRMFAL 219
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 165/296 (55%), Gaps = 10/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC +D+ RN+CQYCR +K
Sbjct: 54 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKK 113
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+RE VQ R + + + T+G + + +L AE +
Sbjct: 114 CLKVGMRRE-VQRGRMPPNQPNPSHYALTNGDHLNGQCYLSGYISLLLRAEPYPASRYGN 172
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 173 QCMQSGNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 232
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R E V K++ +++D E C +
Sbjct: 233 QSSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKA 291
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLP+LR +
Sbjct: 292 IVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMV 347
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 171/314 (54%), Gaps = 28/314 (8%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR R C ID+ RN+CQYCR +K
Sbjct: 83 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGSRQCPIDQHHRNQCQYCRLKK 142
Query: 118 CLNMGMKREAVQEER-QRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQE 170
CL MGM+REAVQ R T+ +V +G T + + +L AE +
Sbjct: 143 CLKMGMRREAVQRGRVPPTQHPFPGQVTWANGDPLNGHTYLSSFISMLLRAEPYPTSRYG 202
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
Q N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 203 QCMQP-NNIMGIENICELAARLLFSAVEWARNIPFFPELQITDQVALLRVSWSELFVLNA 261
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLR 288
+ S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 262 AQCSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLK 320
Query: 289 TIILFNPDVR-----------------GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
I+LF+ D + GL +E ++EK +LEEY R + +P R
Sbjct: 321 AIVLFSSDRKPEPVPSQRPAVNGYNACGLSDATHIENIQEKSQCALEEYVRSQYPNQPTR 380
Query: 332 FAKLLLRLPSLRSI 345
F KLLLRLPSLR++
Sbjct: 381 FGKLLLRLPSLRTV 394
>gi|94481791|gb|ABF21496.1| hepatocyte nuclear factor-4 alpha [Oreochromis mossambicus]
Length = 340
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 164/259 (63%), Gaps = 15/259 (5%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
+H GS LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R CI+DK +R
Sbjct: 43 SHLAAGS--LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKR 100
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVD 166
N+C+YCR +KC GMK+EAVQ ER R R S+ +S+ +P + +++A+
Sbjct: 101 NQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALIQADVLSR 154
Query: 167 MKQEPA---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
PA + DI ++ A T++C++ +QL LV+WAK+IP F LPL+DQV LLRA
Sbjct: 155 QITSPAPILNGDIRTKKIATITDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAH 214
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E L+ + RS+ KD +LL + R+ E VG + R+L ELV +E+++D
Sbjct: 215 AGEHLLLGAAKRSMLYKDILLLGNDHIIPRNCP-ELEVGRVAVRILDELVLPFQELQIDD 273
Query: 282 TELGCLRTIILFNPDVRGL 300
E CL+ I+ F+PD +GL
Sbjct: 274 NEYACLKAIVFFDPDAKGL 292
>gi|71040962|gb|AAZ20372.1| RXRe nuclear hormone receptor [Gecarcinus lateralis]
Length = 232
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/181 (60%), Positives = 133/181 (73%), Gaps = 6/181 (3%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQD 175
CL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 132 CLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQG 191
Query: 176 I 176
+
Sbjct: 192 V 192
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 171/292 (58%), Gaps = 15/292 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD++SGKHYGVY+CEGCK FFKR++R++L Y CR + C +D+ RN+CQ+CR +K
Sbjct: 9 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRNLEYQCRSNKKCPVDQHHRNQCQHCRLKK 68
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C +GM+REAVQ R + + +N S S + + +++ AE + P + +
Sbjct: 69 CFKVGMRREAVQSGRHKVQ---ANTQSSASSSFSSTFLSQLIAAEPFQPV-LSPISMNFM 124
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
N+ + N+C+ K LF ++WAK+IP F TL DQ+ L++ GW EL + + +
Sbjct: 125 ND-GSQNMCELATKLLFNAIEWAKNIPIFPTLTTGDQIALIKLGWKELFVLNLGKCQSPL 183
Query: 238 KDGILLA----PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
+ +L+ G+ Y+++ +E + L + ++ +++D E CL+ +ILF
Sbjct: 184 RLNDVLSNSNLDGLPEYQATFYEHV------KALQTQIDTLKSLQIDAAEYACLKAMILF 237
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
PD L + + L+EK +LE YT+ + +P RF KLLLRL S+R I
Sbjct: 238 TPDTPSLNNSAYIHTLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPI 289
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 162/288 (56%), Gaps = 12/288 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD++SGKHYGV++CEGCK FFKR+VR++L+Y CR R+C ID+ RN+CQYCR +K
Sbjct: 28 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRDCPIDQHHRNQCQYCRLKK 87
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVE--------STSG-TLIEMPVERILEAEQRVDMK 168
CL +GM+REAVQ R + + ST+G + + + +L AE +
Sbjct: 88 CLKVGMRREAVQRGRIPAAQTPTQNAALPGINGDGSTNGHSYLSGFIALLLRAEPYPTTR 147
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ NIC+ + LF V+WA++IP F L + DQV LLR W+EL +
Sbjct: 148 FQQGLNMPCGIMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVL 207
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGC 286
+ + + ++ LLA ++ + + D R+ E V K+R + +D E C
Sbjct: 208 NAAQCPMPLQVAPLLA-TAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLRNLHVDAAEFAC 266
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
L+ I+LF D GL Q +E L+EK +LEEYTR + +P RF K
Sbjct: 267 LKAIVLFTSDASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGK 314
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 161/289 (55%), Gaps = 14/289 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD++SGKHYGV++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 30 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRNCPIDQHHRNQCQYCRLRK 89
Query: 118 CLNMGMKREAVQEER----------QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
C+ +GM+REAVQ R + + N+V S + + + +L AE
Sbjct: 90 CMKVGMRREAVQRGRIPPTQVPQPSPQHSALNGNDV-SNGHSFLSGFISLLLRAEPYPTT 148
Query: 168 KQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ + NIC+ + LF V+WA++IP F L + DQV LLR W+EL +
Sbjct: 149 RFQQGMNMPCGIMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFV 208
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELG 285
+ + + ++ LLA ++ + + D R+ E + K R + +D E
Sbjct: 209 LNAAQCPMPLQVAPLLA-SAGIHSNHMSPDRMVTFMDNVRIFQEQIEKYRNLHVDAAEFA 267
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
CL+ I+LF D GL Q +E L+EK +LEEYTR + +P RF K
Sbjct: 268 CLKAIVLFTSDASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGK 316
>gi|71559111|gb|AAZ38142.1| USP/RXR [Xenos vesparum]
Length = 147
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 124/150 (82%), Gaps = 6/150 (4%)
Query: 75 CEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
CEGCKGFFKRTVRKDL+YACRE ++C++D+RQRNRCQYCRYQKCL MGMKREAVQEERQR
Sbjct: 1 CEGCKGFFKRTVRKDLTYACREEKSCLVDRRQRNRCQYCRYQKCLAMGMKREAVQEERQR 60
Query: 135 TKERD--SNEVESTSGTLI-EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDK 191
K+R+ S EVESTS + +MP+ERILEAE+R+D K E + E +N C+AT+
Sbjct: 61 NKDRENTSGEVESTSSYVFNDMPIERILEAERRIDCKIEFP---VEFENSVSNFCQATNT 117
Query: 192 QLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
QLFQ++DWAKHIP+FT+LP+ DQV+LL+A
Sbjct: 118 QLFQIIDWAKHIPYFTSLPVADQVVLLKAS 147
>gi|63146929|emb|CAI94598.1| retinoid X receptor [Oncorhynchus mykiss]
Length = 156
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 120/156 (76%), Gaps = 6/156 (3%)
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL GMKREAVQEERQR KER NEVESTSG +MPVE++LEAE V+ K
Sbjct: 1 CQYCRYQKCLACGMKREAVQEERQRAKERSENEVESTSGVNEDMPVEKVLEAELAVEPKT 60
Query: 170 EPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWN
Sbjct: 61 ETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWN 120
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
ELLIASFSHRSI+VKDGILLA G+ V R+SAH AGV
Sbjct: 121 ELLIASFSHRSIAVKDGILLATGLHVQRNSAHSAGV 156
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 172/339 (50%), Gaps = 15/339 (4%)
Query: 9 LVNFNSGGANSMSSF---GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRA 65
+V GG N ++ G +S ++ S P P + G + C +CGD++
Sbjct: 342 MVTGGWGGPNGDTNGVEKGGYPRTSEEDSASPQGGGSDPEPGDEDKPGLQVDCVVCGDKS 401
Query: 66 SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKR 125
SGKHYGV++CEGCK FFKR++R++LSY CR R+C ID+ RN+CQYCR +KC +GM++
Sbjct: 402 SGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRK 461
Query: 126 EAVQEERQRTKERDSNEVESTSGTLIE----MPVERILEAEQRVDMKQEPADQDIVNEQQ 181
EAVQ R + G E PV ++ R + +QQ
Sbjct: 462 EAVQRGRIPHPHSGGSPTALAGGGGGEYFNGQPVSELISQLLRAEPYPAARYGSQYAQQQ 521
Query: 182 AT-----NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
+ NIC+ + LF V+WA++IP F LP+ DQV LLR W+EL + + + ++
Sbjct: 522 GSVMGIDNICELAARLLFSTVEWARNIPFFPELPVADQVALLRLSWSELFVLNAAQSALP 581
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFN 294
+ LLA + + V D RV E V K+ +++D E CL+ I LF
Sbjct: 582 LHMAPLLA-AAGFHAAPMAADRVVSFMDQIRVFQEQVDKLNRLQVDSAEYSCLKAIALFT 640
Query: 295 PDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
PD GL VE L+EK +L EY R + +P RF
Sbjct: 641 PDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFG 679
>gi|45387535|ref|NP_991109.1| hepatic nuclear factor 4, beta [Danio rerio]
gi|41351199|gb|AAH65657.1| Hepatic nuclear factor 4, beta [Danio rerio]
Length = 465
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 169/300 (56%), Gaps = 12/300 (4%)
Query: 35 GSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
G +++S+ P P S LC+IC DRA+GKHYG SC+GCKGFF+R+VRK+ +Y C
Sbjct: 44 GHASASV----PVVVPQQSSMSLCAICADRATGKHYGASSCDGCKGFFRRSVRKNHAYTC 99
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
R R C++DK +RN+C+YCR +KC GM++EAVQ ER R R N+ T + M
Sbjct: 100 RFSRQCVVDKDKRNQCRYCRLRKCFRAGMRKEAVQNERDRISCRRENQGVGTLTIDVLMQ 159
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
E ++ ++ + I ++C++ +QL LV+WAK IP F L ++D+
Sbjct: 160 AEAYTHQSLSQNLMRDVGSKKIAG---VGDVCESMKQQLLLLVEWAKRIPEFCELSVDDR 216
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
V LLRA E LI + RS+ D ILL + + E + + R+L ELV +
Sbjct: 217 VALLRAHSAEHLILGVARRSLPYSDIILLGNDFIIPVGGS-EQEMSKVAVRILEELVRPL 275
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+E+ + TE CL+TI+ F PD GL+ Q V LR + L+E T SE+ GRF +
Sbjct: 276 KELNITDTEFVCLKTIVFFAPDCPGLQCAQAVRRLRFQAQVLLDEAT----SEQRGRFGE 331
>gi|339248557|ref|XP_003373266.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
gi|316970665|gb|EFV54558.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
Length = 426
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 168/298 (56%), Gaps = 27/298 (9%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C IC DRA+G+HYG SC+GCKGFF+RTVRK Y CR + C+ID+ +RN C++CR+QK
Sbjct: 86 CVICKDRATGRHYGTNSCDGCKGFFRRTVRKKQHYVCRFDQKCVIDRDKRNSCRHCRFQK 145
Query: 118 CLNMGMKREA----VQEERQRTKER-DSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CL GM++E VQ ER + K R +V+S + + ++EAE+ K P
Sbjct: 146 CLAAGMRKEGPLDTVQNERDQIKRRVQEGKVDSAAQHWMGF-FSMLMEAEK----KSSPV 200
Query: 173 DQDIV-NEQQA---------------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
++ N QA T+I +A +QL LVDWAK +P F L LEDQV+
Sbjct: 201 RVSVITNASQAGTDEKLDSVSKLATLTDIGEAIKQQLLLLVDWAKALPPFHALALEDQVV 260
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS-SAHEAGVGGIFDRVLTELVSKMR 275
LLRA E L+ + RS+ KD +LL+ + R S H V + RVL ELV MR
Sbjct: 261 LLRAYAAEHLLLGVARRSLPFKDMLLLSNDACIPRGHSNHLPDVNHVLLRVLDELVEPMR 320
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
E+ D TE C++ ++ FN ++ GL S+ V+ LR KV L+ Y N ++P RF
Sbjct: 321 ELNPDDTEYACIKALLFFNQNITGLHSKNEVKDLRSKVLIGLQTYCADNCKKDPLRFG 378
>gi|449275308|gb|EMC84181.1| Hepatocyte nuclear factor 4-gamma [Columba livia]
Length = 441
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 8/295 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK+ Y CR R C++DK +RN+C+Y
Sbjct: 44 GVSGLCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCRFNRQCVVDKDKRNQCRY 103
Query: 113 CRYQKCLNM--GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
CLN AVQ ER R R + ++ + L + +
Sbjct: 104 -----CLNKLDYYSFPAVQNERDRISTRRNTFDGCNIPSISTLSQAEALSRQISISSPGA 158
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D ++ +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 159 STDINVKKIASISDVCESMKQQLLVLVEWAKYIPGFCELPLDDQVALLRAHAGEHLLLGA 218
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ RS++ KD +LL ++R+S E + + +R+L ELV +E+++D E CL+ I
Sbjct: 219 AKRSMAYKDILLLGNNYIIHRNST-EVEISRVANRILDELVRPFQEIQIDDNEYACLKAI 277
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ F+PD +GL + ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 278 VFFDPDAKGLSNPMKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 332
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 164/297 (55%), Gaps = 11/297 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 31 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 90
Query: 118 CLNMGMKREA-VQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQE 170
CL +GM+RE V + + + T+G + + +L AE +
Sbjct: 91 CLKVGMRREGLVLPGLMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYG 150
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 151 SQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNA 210
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLR 288
+ S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 211 AQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLK 269
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+L D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 270 AIVL-TADACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 325
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 169/321 (52%), Gaps = 12/321 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL---CSICGDRASGKHYGVYSCEGCKG 80
GS S G + + P N L G K C +CGD++SGKHYG ++CEGCK
Sbjct: 17 GSQLQMCSQEPGGTPGTPSGSTPGNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKS 76
Query: 81 FFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD- 139
FFKR+VR++LSY CR R+C ID+ RN+CQYCR +KCL +GM+REAVQ R +
Sbjct: 77 FFKRSVRRNLSYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQSSP 136
Query: 140 ----SNEVESTSG-TLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLF 194
SN + +G + + +L AE + N NIC+ + LF
Sbjct: 137 GQYLSNGSDPYNGQPYLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAARLLF 196
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
V+WAK+IP F L L DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 197 SAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPM 255
Query: 255 HEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
V D RV E V K++ +++D E CL++I+LF D GL VE ++EK
Sbjct: 256 SAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEK 315
Query: 313 VYTSLEEYTRVNHSEEPGRFA 333
+LEEY R + +P RF
Sbjct: 316 SQCALEEYVRNQYPNQPNRFG 336
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 173/320 (54%), Gaps = 25/320 (7%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
G+ N S+S N+ S I PN C +CGDR+SGKHYG ++CEGCK FFK
Sbjct: 32 GTPNGSTSGNDALSGDKI-----PNVD-------CMVCGDRSSGKHYGQFTCEGCKSFFK 79
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
R+VR++L+Y CR R+C ID+ RN+CQYCR +KCL +GM+REAVQ R RT S+
Sbjct: 80 RSVRRNLTYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRTSNSQSSPG 137
Query: 144 ES-TSGT-------LIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ T+GT + + +L AE + N NIC+ + LF
Sbjct: 138 QYLTNGTDPYNGQPYLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAARLLFS 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WAK+IP F L L DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 198 AVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMS 256
Query: 256 EAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
V D RV E V K++ +++D E CL++I+LF D GL VE ++EK
Sbjct: 257 AERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKS 316
Query: 314 YTSLEEYTRVNHSEEPGRFA 333
+LEEY R + +P RF
Sbjct: 317 QCALEEYVRNQYPSQPNRFG 336
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 166/319 (52%), Gaps = 12/319 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
GS ++ ++ S + P + G + C +CGD++SGKHYGV++CEGCK FFK
Sbjct: 23 GSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFK 82
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER--------QRT 135
RT+R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EAVQ R
Sbjct: 83 RTIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAAC 142
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ VE +G + + ++L AE + ++ N+C+ + LF
Sbjct: 143 SPPGATGVEPFTGPPVSELIAQLLRAEPYPAAGRFGGGGAVLG---IDNVCELAARLLFS 199
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WA+H P F LP DQV LLR W+EL + + + ++ + LLA A
Sbjct: 200 TVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAA 259
Query: 256 EAGVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
E V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK
Sbjct: 260 ERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQ 319
Query: 315 TSLEEYTRVNHSEEPGRFA 333
+L EY R + +P RF
Sbjct: 320 VALTEYVRAQYPSQPQRFG 338
>gi|395506966|ref|XP_003757799.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Sarcophilus harrisii]
Length = 358
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 162/271 (59%), Gaps = 12/271 (4%)
Query: 34 NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 93
N +S S ++ PN G +C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+
Sbjct: 38 NDASPSEGVNLNAPNS--LGVSPMCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYS 95
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+ +S+ +
Sbjct: 96 CRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS---- 151
Query: 154 PVERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTT 208
+ +L+AE Q++ + DI ++ A ++C++ +QL LV+WAK+IP F
Sbjct: 152 -INALLQAEVLSQQITSPISGINGDIRAKKIANIADVCESMKEQLLVLVEWAKYIPAFCE 210
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
LPL+DQV LLRA E L+ + RS+ KD +LL V R + + R+L
Sbjct: 211 LPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELVEMSRVAVRILD 270
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
ELV +E+++D E CL+ II F+P G
Sbjct: 271 ELVQPFQELQIDDNEYACLKAIIFFDPGATG 301
>gi|224486327|gb|ACN51930.1| ultraspiracle [Daphnia magna]
gi|224486329|gb|ACN51931.1| ultraspiracle [Daphnia magna]
gi|224486331|gb|ACN51932.1| ultraspiracle [Daphnia magna]
gi|224486333|gb|ACN51933.1| ultraspiracle [Daphnia magna]
gi|224486335|gb|ACN51934.1| ultraspiracle [Daphnia magna]
gi|224486337|gb|ACN51935.1| ultraspiracle [Daphnia magna]
gi|224486341|gb|ACN51937.1| ultraspiracle [Daphnia magna]
gi|224486343|gb|ACN51938.1| ultraspiracle [Daphnia magna]
gi|224486345|gb|ACN51939.1| ultraspiracle [Daphnia magna]
Length = 120
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/117 (80%), Positives = 105/117 (89%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C+IDK
Sbjct: 4 YPPNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDK 63
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
RQRNRCQYCRYQKCL MGMKREAVQEERQR KE+ ++++TSG +MP++R+LEA
Sbjct: 64 RQRNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGEMDMDATSGGQGDMPIDRVLEA 120
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 166/319 (52%), Gaps = 12/319 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
GS ++ ++ S + P + G + C +CGD++SGKHYGV++CEGCK FFK
Sbjct: 23 GSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFK 82
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER--------QRT 135
R++R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EAVQ R
Sbjct: 83 RSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAAC 142
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ VE +G + + ++L AE + ++ N+C+ + LF
Sbjct: 143 SPPGATGVEPFTGPPVSELIAQLLRAEPYPAAGRFGGGGAVLG---IDNVCELAARLLFS 199
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WA+H P F LP DQV LLR W+EL + + + ++ + LLA A
Sbjct: 200 TVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAA 259
Query: 256 EAGVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
E V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK
Sbjct: 260 ERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQ 319
Query: 315 TSLEEYTRVNHSEEPGRFA 333
+L EY R + +P RF
Sbjct: 320 VALTEYVRAQYPSQPQRFG 338
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 170/312 (54%), Gaps = 20/312 (6%)
Query: 35 GSSNSSIISPYPPNHPLCGSKHL---CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLS 91
G+ N S P N L G K C +CGD++SGKHYG ++CEGCK FFKR+VR++L+
Sbjct: 32 GTPNGST----PGNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLT 87
Query: 92 YACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES-TSGT- 149
Y CR R+C ID+ RN+CQYCR +KCL +GM+REAVQ R RT S+ + T+GT
Sbjct: 88 YTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRTSNSQSSPGQYLTNGTD 145
Query: 150 ------LIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHI 203
+ + +L AE + N NIC+ + LF V+WAK+I
Sbjct: 146 PYNGQPYLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAARLLFSAVEWAKNI 205
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
P F L L DQV LLR W+EL + + + S+ + LLA ++ S V
Sbjct: 206 PFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSAERVVAFM 264
Query: 264 D--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
D RV E V K++ +++D E CL++I+LF D GL VE ++EK +LEEY
Sbjct: 265 DHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYV 324
Query: 322 RVNHSEEPGRFA 333
R + +P RF
Sbjct: 325 RNQYPSQPNRFG 336
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 166/301 (55%), Gaps = 16/301 (5%)
Query: 46 PPNHPLCGSKHL---CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P N L G K C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR R+C I
Sbjct: 39 PGNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRDCPI 98
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES-TSGT-------LIEMP 154
D+ RN+CQYCR +KCL +GM+REAVQ R RT S+ + T+GT +
Sbjct: 99 DQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRTSNSQSSPGQYLTNGTDPYNGQPYLSGF 156
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
+ +L AE + N NIC+ + LF V+WAK+IP F L L DQ
Sbjct: 157 ISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQ 216
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVS 272
V LLR W+EL + + + S+ + LLA ++ S V D RV E V
Sbjct: 217 VALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSAERVVAFMDHIRVFQEQVE 275
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
K++ +++D E CL++I+LF D GL VE ++EK +LEEY R + +P RF
Sbjct: 276 KLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRF 335
Query: 333 A 333
Sbjct: 336 G 336
>gi|322795773|gb|EFZ18452.1| hypothetical protein SINV_10428 [Solenopsis invicta]
Length = 441
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 166/307 (54%), Gaps = 19/307 (6%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+IC DRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C ID+ +RN+C+YCR +K
Sbjct: 28 CAICSDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFQRKCPIDRDKRNQCRYCRLRK 87
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNE--VESTSGTLIEMPVERILEAEQ----------- 163
C GMK+EAVQ ER R R SNE + G E V+ AE
Sbjct: 88 CFRAGMKKEAVQNERDRISCRRPSNEDPPDKNKGPSKEDVVKADARAEMLSKQVGGLEVP 147
Query: 164 RVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
++D D ++C + +QL L++WAK F L L+DQV LLRA
Sbjct: 148 QIDSSSNEIDLSTKRIAGLNDVCDSMKEQLLILIEWAKCFDEFKALSLDDQVALLRAHAG 207
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYR-----SSAHEAGVGGIFDRVLTELVSKMREMK 278
E L+ + RS + D +LL + R ++ + + + RV+ ELV +++K
Sbjct: 208 EHLLLGVARRSRNFTDVLLLGNDCIIMRNCPEGNNQQDLDISKVGIRVMDELVKPFQKIK 267
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
+D TE L+ I+ F+P+ +GL Q+ V LR + LE + + + PG F +LL
Sbjct: 268 IDDTEFAFLKAIVFFDPNAKGLSDQKTVRELRHNIQIKLENHISDHRCDLPGHFGDILLM 327
Query: 339 LPSLRSI 345
LP+L+SI
Sbjct: 328 LPALQSI 334
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 181/315 (57%), Gaps = 45/315 (14%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGDR+SGKHYGV++C+GC+GFFKR++R++L+Y C+E C++D +RN+CQ CR +K
Sbjct: 1 CRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCQACRLKK 60
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV-ESTSGTLIEMPVERILEAEQRVDMKQEPADQDI 176
C + M ++AVQ ER R + + +TS T I+ L E R D
Sbjct: 61 CFEVQMNKDAVQHER---APRSAQILPRATSTTTID------LNKEDR---------PDG 102
Query: 177 VNEQQATNIC------------------KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
V Q++T++C ++ + L+ V WA++IP F LP DQ +LL
Sbjct: 103 VPTQRSTDMCPGWTFPTGYQTAPQDSIYESAVQLLYMSVTWARNIPTFLDLPFRDQAILL 162
Query: 219 RAGWNELLIASFSHRSISVKDGILL-APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREM 277
GW+EL + S + S+ + G LL A G+ V ++ G R+L +V++ + +
Sbjct: 163 EEGWSELFVLSSAQFSLPLDMGPLLSAAGLQVDKAPTDRIVAGMADIRLLQNIVTRFKRL 222
Query: 278 KMDKTELGCLRTIILFNP-------DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
++D TE CL+ I+LF P ++RGL++ Q+VE L+++ + L EY R + ++
Sbjct: 223 QIDSTEYACLKAIVLFKPVLPFFPVNLRGLRAPQLVERLQDQAQSMLGEYCRSQYPDQQV 282
Query: 331 RFAKLLLRLPSLRSI 345
RF KLLL LPSL+++
Sbjct: 283 RFGKLLLMLPSLKTV 297
>gi|71040964|gb|AAZ20373.1| RXRf nuclear hormone receptor [Gecarcinus lateralis]
Length = 201
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/185 (59%), Positives = 132/185 (71%), Gaps = 9/185 (4%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDI 176
CL MGMKREAVQEERQRTK ++ + ES+ G + +MP+ I EAE VD P D+
Sbjct: 132 CLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVD----PIDEQP 187
Query: 177 VNEQQ 181
+ + Q
Sbjct: 188 LGQGQ 192
>gi|332020205|gb|EGI60649.1| Transcription factor HNF-4-like protein [Acromyrmex echinatior]
Length = 440
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 171/310 (55%), Gaps = 24/310 (7%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+IC DRA+GKHYG SC+GCKGFF+R+VRK+ Y CR R C ID+ +RN+C+YCR +K
Sbjct: 26 CAICSDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFQRKCPIDRDKRNQCRYCRLRK 85
Query: 118 CLNMGMKREAVQEERQRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVDM--------- 167
C GMK+EAVQ ER R R SNE E +++A+ R +M
Sbjct: 86 CFRAGMKKEAVQNERDRISCRRPSNEDPPDKNKGPSK--EDVVKADTRAEMLSKHVGGLE 143
Query: 168 KQEP----ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
Q+P + D+ ++ A ++C + +QL L++WAK F L L+DQV LLRA
Sbjct: 144 LQQPDSPNGEIDLSTKRIAGINDVCDSMREQLLILIEWAKCFDEFKALSLDDQVALLRAH 203
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD------RVLTELVSKMR 275
E L+ + RS + D +LL + R+ + D RV+ ELV +
Sbjct: 204 AGEHLLLGVARRSRNFTDVLLLGNDCIIMRNCPEGSNQQDNLDISKVGIRVMDELVKPFQ 263
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
++K+D TE L+ I+ F+P+ +GL Q+ V LR + LE + + + PG F +
Sbjct: 264 KIKIDDTEFAFLKAIVFFDPNAKGLSDQKTVRELRHNIQIKLENHISDHRCDLPGHFGDI 323
Query: 336 LLRLPSLRSI 345
LL LP+L+SI
Sbjct: 324 LLMLPALQSI 333
>gi|40805171|gb|AAR91926.1| retinoid X receptor gamma [Cervus elaphus]
Length = 151
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 116/156 (74%), Gaps = 13/156 (8%)
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
DR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDKRQRNRCQY RYQKCL MG
Sbjct: 1 DRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYXRYQKCLVMG 60
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV--------DMKQEPADQ 174
MKREAVQEERQR++ER +E E + +MPVERILEAE V DM E +
Sbjct: 61 MKREAVQEERQRSRERAESEAECANSGHEDMPVERILEAELAVEPKTESYGDMNTESSTN 120
Query: 175 DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLP 210
D V TNIC A DKQLF LV+WAK IPHF TLP
Sbjct: 121 DPV-----TNICHAADKQLFTLVEWAKRIPHFLTLP 151
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 162/296 (54%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 186 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 245
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 246 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 305
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 306 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 365
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +
Sbjct: 366 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVXXXXXXXXGA 424
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++L D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 425 VLLEVSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 480
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 167/341 (48%), Gaps = 56/341 (16%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 1 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 60
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL +GM+REAVQ R + + T+G + L + ++ EP
Sbjct: 61 CLKVGMRREAVQRGRVPPTQPHHGQFALTNGDPLH--CHSYLSGYISLLLRAEPYPTSRY 118
Query: 178 NEQ--------QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
Q NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 119 GSQCMQPNAVMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLN 178
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCL 287
+ S+ + LLA ++ S V D R+ E V K++ + +D E CL
Sbjct: 179 AAQCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCL 237
Query: 288 RTIILFNP-------------------------------------------DVRGLKSQQ 304
+ I+LF D GL
Sbjct: 238 KAIVLFTTGKTIDGRAPKFTLCMNVTITHADSSHSSPDPNICAGYMLLLILDACGLSDVA 297
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 298 HVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 338
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 132/265 (49%), Gaps = 21/265 (7%)
Query: 99 NCIIDKRQRNRCQYCRYQKCLNMGMKREAV--------QEERQRTKERDSNEVESTSGTL 150
NC ID+ RN+CQYCR +KCL +GM+REAV Q R + + T+G
Sbjct: 458 NCPIDQHHRNQCQYCRLKKCLKVGMRREAVVSLFTAAVQRGRVPPTQPHHGQFALTNGDP 517
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQ--------QATNICKATDKQLFQLVDWAKH 202
+ L + ++ EP Q NIC+ + LF V+WA++
Sbjct: 518 LH--CHSYLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAARMLFSAVEWARN 575
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGI 262
IP F L + DQV LLR W+EL + + + S+ + LLA ++ S V
Sbjct: 576 IPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPMSADRVVAF 634
Query: 263 FD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
D R+ E V K++ + +D E CL+ I+LF D GL VE L+EK +LEEY
Sbjct: 635 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCALEEY 694
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
R + +P RF KLLLRLPSLR++
Sbjct: 695 VRSQYPNQPTRFGKLLLRLPSLRTV 719
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 157/300 (52%), Gaps = 25/300 (8%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV++CEGCK FFKR+VR++L+Y CR R C ID+ RN+CQYCR +K
Sbjct: 53 CVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRECQIDQHHRNQCQYCRLKK 112
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGT---------------LIEMPVERILEAE 162
C +GM++EAVQ R + S + G+ PV ++
Sbjct: 113 CFRVGMRKEAVQRGRVPPQPSLSPSITPIGGSSGLGGEFYNNNNGISGGGQPVSELISQL 172
Query: 163 QRVDM-------KQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
R + Q N NIC+ + LF +V+WA++IP+F LP+ DQV
Sbjct: 173 LRAEPYPGSRYGHQYSQQSGPDNSMGIDNICELAARLLFSIVEWARNIPYFPELPVSDQV 232
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSK 273
LLR W+EL I + + ++ + LLA + S V D RV + V K
Sbjct: 233 ALLRLSWSELFILNAAQSALPLHMAPLLA-AAGFHSSPMSAERVVSFMDQVRVFQDQVDK 291
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
+ +++D E CL+ I LF+PD GL VE L+EK +L EY R+ + +P RF
Sbjct: 292 LTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFG 351
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 158/287 (55%), Gaps = 12/287 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y+CR RNC ID+ RN+CQYCR++K
Sbjct: 92 CIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRNCPIDQHHRNQCQYCRFKK 151
Query: 118 CLNMGMKREAVQEERQRTKERD--------SNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CL GM+REAVQ R + +N + T + + +L AE M +
Sbjct: 152 CLKSGMRREAVQRGRVPPTQHPGFPGQLALANTDPFSGHTYLSSFISMLLRAEP-YPMSR 210
Query: 170 EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
N NIC+ + LF V+W ++IP F L + DQV LLR W+EL + +
Sbjct: 211 YGQCMQPNNIMGIENICELAARLLFSAVEWGRNIPFFPDLQVADQVALLRLAWSELFVLN 270
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCL 287
+ ++ + LLA ++ S V D R+ E V K++ + +D E CL
Sbjct: 271 AAQCAMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCL 329
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+ I+LF+ D GL +E L+EK +LEEY R + +P RF K
Sbjct: 330 KAIVLFSSDACGLSDSAHIESLQEKAQCALEEYDRSQYPNQPTRFGK 376
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 156/284 (54%), Gaps = 9/284 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR R+C ID+ RN+CQYCR +K
Sbjct: 63 CLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRDCPIDQHHRNQCQYCRLKK 122
Query: 118 CLNMGMKREAVQEERQRTKERDS-----NEVESTSG-TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + N V+ +G + + + +L AE +
Sbjct: 123 CLKVGMRREAVQRGRMSHPQTSPGQYTLNNVDPYNGHSYLTGFISLLLRAEPYPTSRYGA 182
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF ++WAK+IP F L DQV LLR W+EL + + +
Sbjct: 183 QCLQPNNIMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAA 242
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D RV E V K++ + +D E CL+
Sbjct: 243 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKA 301
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
I LF PD GL VE ++EK +LEEY R + +P RF
Sbjct: 302 IALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFG 345
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 165/318 (51%), Gaps = 13/318 (4%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
GS ++ ++ S + P + G + C +CGD++SGKHYGV++CEGCK FFK
Sbjct: 23 GSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFK 82
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER--------QRT 135
RT+R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EAVQ R
Sbjct: 83 RTIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAAC 142
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ VE +G + + +L AE + ++ N+C+ + +
Sbjct: 143 SPPGATGVEHFTGPPVSELIAHVLRAEPYPAAGRFGGGGAVLG---IDNVCELAARAV-S 198
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WA+H P F LP DQV LLR W+EL + + + +++V LLA A
Sbjct: 199 TVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAAVAVHTAPLLAAAGLHAAPMAA 258
Query: 256 EAGVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
E V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK
Sbjct: 259 ERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQ 318
Query: 315 TSLEEYTRVNHSEEPGRF 332
+L EY R + +P RF
Sbjct: 319 VALTEYVRAQYPSQPQRF 336
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 23/311 (7%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQ 111
G C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ
Sbjct: 34 GPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQ 93
Query: 112 YCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP 171
CR +KCL GM ++AVQ ERQ R + +V T+ + P + ++ E
Sbjct: 94 ACRLKKCLQAGMNQDAVQNERQ---PRSTAQVRLTAWSPTLSPGRSPVAPP--APLEPED 148
Query: 172 ADQDI---VNEQQAT-------------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
AD++I N+ + +I + + + LF V WAK++P F++LP DQV
Sbjct: 149 ADENIDVTSNDPEFPSSPFSSSSPCGLDSIHETSARLLFMSVKWAKNLPVFSSLPFRDQV 208
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPG-VTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+LL W+EL + S+ + LLAP + + + + RVL E +S+
Sbjct: 209 ILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAPGRLTLASMETRVLQETISRF 268
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
R + +D TE C++ ++LF P+ RGLK + VE L+++ L ++++ +H +P RF K
Sbjct: 269 RALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPMRFGK 328
Query: 335 LLLRLPSLRSI 345
LLL LPSLR I
Sbjct: 329 LLLLLPSLRFI 339
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 158/301 (52%), Gaps = 26/301 (8%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV++CEGCK FFKR+VR++LSY CR R C ID+ RN+CQYCR +K
Sbjct: 53 CVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRECQIDQHHRNQCQYCRLKK 112
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV----------------ESTSGTLIEMPVERILEA 161
C +GM++EAVQ R + S + + G+ PV ++
Sbjct: 113 CFRVGMRKEAVQRGRIPPQPSLSPSITPIGGASGLGGGEFYNNNNGGSGGGQPVSELISQ 172
Query: 162 EQRVDMKQEPADQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
R + N+Q NIC+ + LF V+WA++IP+F LP+ DQ
Sbjct: 173 LLRAEPYPNSRYGHQYNQQAGPDNAMGIDNICELAARLLFSTVEWARNIPYFPELPVSDQ 232
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVS 272
V LLR W+EL I S + ++ + LLA + S V D RV + V
Sbjct: 233 VALLRLSWSELFILSAAQSALPLHMAPLLA-AAGFHSSPMSAERVVSFMDQVRVFQDQVD 291
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
K+ +++D E CL+ I LF+PD GL VE L+EK +L EY R+ + +P RF
Sbjct: 292 KLTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRF 351
Query: 333 A 333
Sbjct: 352 G 352
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 168/299 (56%), Gaps = 31/299 (10%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD++SGKHYGVY+CEGCK FFKR++R+ LSY+CR RNC +D + RN+CQYCR +K
Sbjct: 32 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRNQCQYCRLKK 91
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP---------VERILEAEQRVDMK 168
CL +GM++EAVQ+ R + D V S +++EM + +L A+ +
Sbjct: 92 CLKVGMRKEAVQKGRIPSTHPD---VGPLSVSMVEMNGHQSFYSSYITLLLRADTIARYQ 148
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
Q +N + T A + L V+WAK+IP ++ LPL DQ +LLR+ W+EL
Sbjct: 149 QSLTLPCNINGLENTPELAA--RLLVSAVEWAKNIPFYSDLPLPDQAVLLRSCWSEL--- 203
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT-------------ELVSKMR 275
F+ + ++P +T S G G + RV++ E V K++
Sbjct: 204 -FTLNAAQHCSPFHISPTLTSNSSGFAGNGGGYLNTRVMSAFDCQNNNMKLFEEQVEKLK 262
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
M +D E CL+ I+LFNPD +GL VE L+++ ++LE+Y R + + RF K
Sbjct: 263 NMHIDSAEFACLKAIVLFNPDSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGK 321
>gi|426391780|ref|XP_004062244.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Gorilla gorilla
gorilla]
Length = 303
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 153/249 (61%), Gaps = 12/249 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAEQRVDMKQEP 171
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSRQITSP 168
Query: 172 A---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L
Sbjct: 169 VSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY 288
Query: 287 LRTIILFNP 295
L+ II F+P
Sbjct: 289 LKAIIFFDP 297
>gi|20302778|gb|AAM18898.1|AF391296_1 unknown [Branchiostoma floridae]
Length = 182
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 119/172 (69%), Gaps = 11/172 (6%)
Query: 8 LLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASG 67
L F G N +SS S + + SP P P+ SKH+C ICGDRASG
Sbjct: 21 LHPGFGMPGVNQVSS-------SMQEDVKPAQPLQSPRPSQTPMGLSKHICQICGDRASG 73
Query: 68 KHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127
KHYGVYSCEGCKGFFKRTVRKDL+YACR+ R+C+IDKRQRNRCQYCRYQKCL MGMKREA
Sbjct: 74 KHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVIDKRQRNRCQYCRYQKCLAMGMKREA 133
Query: 128 VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNE 179
VQEERQR+KE EV ST+ +MPVE+I EAE M EP D ++V +
Sbjct: 134 VQEERQRSKEGKDGEVVSTTNPNEDMPVEKIQEAE----MAVEPKDGNMVEQ 181
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 157/296 (53%), Gaps = 21/296 (7%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 10 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 69
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 70 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 129
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 130 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 189
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ C
Sbjct: 190 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKXXXXXXXXXAC--- 245
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 246 ---------GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 292
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 154/284 (54%), Gaps = 9/284 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV++CEGCK FFKR+VR++LSY CR R+C ID+ RN+CQYCR +K
Sbjct: 54 CVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKK 113
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV------ESTSGTLIEMPVERILEAEQRVDMKQEP 171
C +GM++EAVQ R ++ E +G + + ++L AE +
Sbjct: 114 CFRVGMRKEAVQRGRIPPAHSSASPTSAPGAGEYFNGQPVSELISQLLRAEPYPASRYGS 173
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+ NIC+ + LF V+W+++IP+F L + DQV LLR W+EL + S +
Sbjct: 174 QYAQQGSVMGIDNICELAARLLFSTVEWSRNIPYFPELAMADQVSLLRLSWSELFVLSAA 233
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
++ + LLA + S V D R+ + V K+ +++D E CL+
Sbjct: 234 QSALPLHMAPLLA-AAGFHASPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKA 292
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
I LF D GL VE L+EK +L EY R + +P RF
Sbjct: 293 IALFTSDACGLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFG 336
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 151/273 (55%), Gaps = 9/273 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTR 322
I+LF D GL VE L+EK +LEEY R
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVR 350
>gi|443690966|gb|ELT92951.1| hypothetical protein CAPTEDRAFT_224945 [Capitella teleta]
Length = 445
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 175/321 (54%), Gaps = 32/321 (9%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C +CGD+ SG HY VY+CEGCKGFFKRTV+K+L+Y C+E C+++K RN CQ CR+Q
Sbjct: 97 VCLVCGDKGSGFHYSVYTCEGCKGFFKRTVQKNLNYCCKENGMCVVNKFTRNSCQCCRFQ 156
Query: 117 KCLNMGMKREAVQEERQ--------------RTKERDSNEVESTSGTLIE---------- 152
KC+ +GMKREAV+E+R ++ DS G+++
Sbjct: 157 KCIEVGMKREAVREDRSPGGKHRHKRPRVEGSMEDSDSQTYIINQGSVLSNSPPSGPPSM 216
Query: 153 -MPVERILEAEQRVDMKQEP-------ADQDIVNEQQATNICKATDKQLFQLVDWAKHIP 204
+P + E E + E DQ N+ N+ + +L +++WA+ +P
Sbjct: 217 VIPSSLLPEDEDLISQLIEARPDLTPNLDQAEENKFDINNLMQFGYMELRLIIEWARKVP 276
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
F +L +EDQ+ LL+A + EL + ++RS+ + GI A GV + + G G
Sbjct: 277 GFPSLLIEDQMALLKASFMELNVFRLAYRSLEFESGIKFAKGVILTGDESLNIGWGKDLI 336
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
E V +++E+++D TE L IIL PD G++ ++ V L+ ++ L Y +
Sbjct: 337 MFTGEFVQRLKEVQIDHTEFCLLNAIILTYPDACGIQDKRKVMQLQSQIIDCLWRYCTTS 396
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ +EP R+ K+LLRLP+LR++
Sbjct: 397 YPDEPRRYGKMLLRLPALRTV 417
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 177/303 (58%), Gaps = 15/303 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE-GRNCIIDKRQRNRCQYCRY 115
+C+IC D+A+G+HYGV SCEGCKGFFKR+V+ Y CR ++C IDKR RNRCQYCR+
Sbjct: 14 ICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHRNRCQYCRF 73
Query: 116 QKCLNMGM-KREAVQEERQRTKERDSNEVESTSGTLIEM--PVERILEAEQRV----DMK 168
QKC+ GM K +A+ + +RT S +S T P + +E + +
Sbjct: 74 QKCIQAGMIKEDAIPCKMRRTSSTSSCSSVLSSATTAAQVKPTKEYIEVIDELIGIYKLD 133
Query: 169 QEPAD------QDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
+ D + + E+ ++ + ++QL + W KH+ + DQ L+ W
Sbjct: 134 NQSCDDCPGCKETGMKEKTLAHLTQLAEQQLVRCASWFKHLKLLKGICELDQQTLVTNVW 193
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
EL++A+ S ++++ L G + +A G+G I RV+ ++ +K RE +++K
Sbjct: 194 VELMLANLIKESENLENKAKLCDGQILDFETAEITGIGDILQRVV-QMAAKFREFQLEKV 252
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
E+ C++ IIL NPD+ GL++QQ++E L++KV+++L+E+ + EP RF +LLRLP L
Sbjct: 253 EIVCMKMIILLNPDLPGLQNQQLIEQLQDKVHSALQEHINLAFPREPNRFGNILLRLPEL 312
Query: 343 RSI 345
RSI
Sbjct: 313 RSI 315
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 155/285 (54%), Gaps = 11/285 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV++CEGCK FFKR+VR++LSY CR R+C ID+ RN+CQYCR +K
Sbjct: 54 CVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKK 113
Query: 118 CLNMGMKREAVQEERQRTKERDSNEV------ESTSGTLIEMPVERILEAEQRVDMKQEP 171
C +GM++EAVQ R ++ E +G + + ++L AE +
Sbjct: 114 CFRVGMRKEAVQRGRIPPAHSSASPTSAPGAGEYFNGQPVSELISQLLRAEPYPASRYGS 173
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
+ NIC+ + LF V+W++ IP+F L + DQV LLR W+EL + S +
Sbjct: 174 QYTQQGSVMGIDNICELAARLLFSTVEWSRSIPYFPELAVADQVSLLRLSWSELFVLSAA 233
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAG-VGGIFD--RVLTELVSKMREMKMDKTELGCLR 288
++ + LLA + SS A V D R+ + V K+ +++D E CL+
Sbjct: 234 QSALPLHMAPLLA--AAGFHSSPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLK 291
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
I LF D GL VE L+EK +L EY R + +P RF
Sbjct: 292 AIALFTSDACGLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFG 336
>gi|47086127|ref|NP_998119.1| estrogen-related receptor gamma [Danio rerio]
gi|45479150|gb|AAS66636.1| estrogen-related receptor gamma [Danio rerio]
Length = 435
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/356 (34%), Positives = 189/356 (53%), Gaps = 26/356 (7%)
Query: 4 DTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGD 63
D+ TL + GA S G+ + + + +S I Y N K LC +CGD
Sbjct: 57 DSPTL---YGPTGALGPSGTGAKRYEDCSSTITEDSQIKCEYMLNS---MPKRLCLVCGD 110
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR+ KCL +GM
Sbjct: 111 IASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLTVGM 170
Query: 124 KREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEAE-QRVDMKQ 169
RE V+ + RQ+ K R E + +P V +L AE +++
Sbjct: 171 MREGVRLDRVRGGRQKYKRRIDAENSPYLNPQLALPPKKPYNKIVSHLLVAEPEKIYAMP 230
Query: 170 EPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+P D DI + T +C D++L + WAKHIP F+TL L DQ+ LL++ W E+LI
Sbjct: 231 DPTVPDSDI---KALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILI 287
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L
Sbjct: 288 LRVVYRSLSFEDKLVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTL 346
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
+ I L N D ++ + V+ L++ ++ +L++Y H E+P R KLL+ LP LR
Sbjct: 347 KAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHVEDPRRAGKLLMTLPLLR 402
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 154/281 (54%), Gaps = 9/281 (3%)
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +KCL +GM+REAVQ R
Sbjct: 1074 FTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGR 1133
Query: 133 QRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNIC 186
+ + + T+G + + +L AE + N NIC
Sbjct: 1134 MPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENIC 1193
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+ + LF V+WA++IP F L + DQV LLR W+EL + + + S+ + LLA
Sbjct: 1194 ELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLA-A 1252
Query: 247 VTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
++ S V D R+ E K++ + +D E CL+ I+LF D GL
Sbjct: 1253 AGLHASPMSADRVVAFMDHIRIFQEQGEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAA 1312
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 1313 HIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 1353
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 179/335 (53%), Gaps = 47/335 (14%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQYCRYQ 116
C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ CR +
Sbjct: 47 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 106
Query: 117 KCLNMGMKREAVQEERQ-RTKER---DSNE--VESTSGTLIEMP---------------- 154
KCL GM ++AVQ ERQ R+ + DS E ES +L+ P
Sbjct: 107 KCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAA 166
Query: 155 -------VERILEAEQRVDMKQEPADQDI---VNEQQAT-------------NICKATDK 191
+ ++ AE ++ E AD++I N+ + +I + + +
Sbjct: 167 RALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSAR 226
Query: 192 QLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR 251
LF V WAK++P F++LP DQV+LL W+EL + S+ + LLAP
Sbjct: 227 LLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAA 286
Query: 252 SSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
A + + RVL E +S+ R + +D TE C++ ++LF P+ RGLK + VE L+
Sbjct: 287 GGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 346
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ L ++++ +H +P RF KLLL LPSLR I
Sbjct: 347 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFI 381
>gi|313226358|emb|CBY21502.1| unnamed protein product [Oikopleura dioica]
Length = 472
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 170/295 (57%), Gaps = 8/295 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG +SC+GCKGFF+R++RK+ SY CR R+C I++ RN C++CR K
Sbjct: 80 CAICGDRATGKHYGAHSCDGCKGFFRRSIRKNHSYQCRRERDCTIERANRNSCRHCRLIK 139
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C GM+REAVQ ER + G L +E + + ++P D + +
Sbjct: 140 CFRAGMRREAVQNERDPIRPAPQRPEPHAKGNLSVKVLETAFKHINNM-FPEDPLDLERI 198
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS--I 235
+E ++ + ++QL LV+WAK IP FTT ++DQV LLRA E L+ S R+ +
Sbjct: 199 SEATRKDVAQCINRQLRILVEWAKAIPAFTTFTVDDQVALLRAFSAEYLMIGCSQRTYQL 258
Query: 236 SVKDG-ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
S+ D ++L V R HE +G + ++L +L MRE+ +D+TE G LR I+ F+
Sbjct: 259 SMMDNQVVLLSNNQVIRRDCHENDMGRLASKILDQLCETMRELGIDQTECGILRAIMFFD 318
Query: 295 PDVRGLKSQ--QVVEMLREKVYTSLEEYTR--VNHSEEPGRFAKLLLRLPSLRSI 345
P + + + V + R+++ +LE+Y + GR ++L +P ++SI
Sbjct: 319 PTAPKVSYEGTKRVRLFRKQLICNLEDYVLEVFANGTSRGRAGEILCLIPPIKSI 373
>gi|192454604|ref|NP_001122150.1| estrogen-related receptor gamma b [Danio rerio]
gi|190337313|gb|AAI63298.1| Estrogen-related receptor gamma b [Danio rerio]
gi|190339730|gb|AAI63306.1| Estrogen-related receptor gamma b [Danio rerio]
Length = 420
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 177/314 (56%), Gaps = 29/314 (9%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C R+C I KR+R CQ
Sbjct: 80 GPKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYSCSVSRDCEITKRRRKSCQA 139
Query: 113 CRYQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMP----------------- 154
CR+ KCL++GM RE V+ +R R +++ ++S S + +P
Sbjct: 140 CRFTKCLSVGMLREGVRLDRVRGGRQKYKRRIDSDSSVYLSVPLPHRKPVSCSAHAENKV 199
Query: 155 VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
V +L AE ++V +PA D DI + T +C D++L + WAKHIP F++L L
Sbjct: 200 VTLLLGAEPEKVCAMPDPALPDSDI---KALTTLCDLADRELVLNISWAKHIPGFSSLSL 256
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTE 269
DQ+ LL++ W E+L+ + RS+ D +L A Y A +A G+ + + +
Sbjct: 257 SDQMSLLQSAWMEILVLRVAFRSLPCDDRLLFADD---YIMDAEQAKCAGLLELHTAILQ 313
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV + R M +++ E L+ I L N D ++ + V+ L++ ++ +L +Y V+HSE+P
Sbjct: 314 LVRRYRCMSLEREEFVTLKAIALANSDSMHIEDVEAVQGLQDALHEALLDYECVHHSEDP 373
Query: 330 GRFAKLLLRLPSLR 343
R KL++ LP LR
Sbjct: 374 RRAGKLIMTLPLLR 387
>gi|82504023|gb|ABB80451.1| estrogen receptor-related receptor beta a [Fundulus heteroclitus]
Length = 435
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMPVER----------IL 159
+ KCL +GM +E V+ + RQ+ K R E S G + P ++ ++
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDAENGSYLGLTLPPPAKKPLTKIVSHLLVV 221
Query: 160 EAEQRVDMKQEP-ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E E+ M D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTMPDGDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+L+ S RS+ +D I+ A V A +G+ + +L LV + ++++
Sbjct: 279 QSAWMEILVLSIVFRSLPCEDEIVYAEDYVVDEEQARISGLPDLHVAILP-LVRRYKKLR 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
M+K E L+ I L N D ++S + V+ L++ ++ +L++Y H E+P R KLL+
Sbjct: 338 MEKEEFVTLKAIALANSDSMHIESIEAVQRLQDSLHEALQDYEGSQHPEDPRRAGKLLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|313219531|emb|CBY30454.1| unnamed protein product [Oikopleura dioica]
Length = 439
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 170/295 (57%), Gaps = 8/295 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG +SC+GCKGFF+R++RK+ SY CR R+C I++ RN C++CR K
Sbjct: 47 CAICGDRATGKHYGAHSCDGCKGFFRRSIRKNHSYQCRRERDCTIERANRNSCRHCRLIK 106
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C GM+REAVQ ER + G L +E + + ++P D + +
Sbjct: 107 CFRAGMRREAVQNERDPIRPAPQRPEPHAKGNLSVKVLETAFKHINNM-FPEDPLDLERI 165
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS--I 235
+E ++ + ++QL LV+WAK IP FTT ++DQV LLRA E L+ S R+ +
Sbjct: 166 SEATRKDVAQCINRQLRILVEWAKAIPAFTTFTVDDQVALLRAFSAEYLMIGCSQRTYQL 225
Query: 236 SVKDG-ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
S+ D ++L V R HE +G + ++L +L MRE+ +D+TE G LR I+ F+
Sbjct: 226 SMMDNQVVLLSNNQVIRRDCHENDMGRLASKILDQLCETMRELGIDQTECGILRAIMFFD 285
Query: 295 PDVRGLKSQ--QVVEMLREKVYTSLEEYTR--VNHSEEPGRFAKLLLRLPSLRSI 345
P + + + V + R+++ +LE+Y + GR ++L +P ++SI
Sbjct: 286 PTAPKVSYEGTKRVRLFRKQLICNLEDYVLEVFANGTSRGRAGEILCLIPPIKSI 340
>gi|410591549|gb|AFV74666.1| estradiol receptor-like protein 4, partial [Portunus
trituberculatus]
Length = 176
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/123 (74%), Positives = 109/123 (88%)
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269
P+EDQV+LL+AGWNELLIASFSHRSI V+DGI+LA G+ V+RSSAH+AGVGGIFDRVL+E
Sbjct: 1 PIEDQVVLLKAGWNELLIASFSHRSIGVEDGIVLATGLVVHRSSAHQAGVGGIFDRVLSE 60
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LVSKM+EMKMDKTELGCLR I+LFNPD +G+ VE+LREKVY +LEEYTR + +EP
Sbjct: 61 LVSKMKEMKMDKTELGCLRAIVLFNPDAKGVTCCNDVEILREKVYAALEEYTRTTYPDEP 120
Query: 330 GRF 332
GRF
Sbjct: 121 GRF 123
>gi|224172708|ref|XP_002189627.1| PREDICTED: hepatocyte nuclear factor 4-beta-like, partial
[Taeniopygia guttata]
Length = 267
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 155/261 (59%), Gaps = 11/261 (4%)
Query: 36 SSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
S+N++++ PN G LCSICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR
Sbjct: 17 SANTNLL----PN----GVSSLCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR 68
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTL-IEMP 154
R C+IDK +RN+C+YCR +KC GMK+EAVQ ER R R S+ ++ S ++ I
Sbjct: 69 FNRQCVIDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISIRRSSYEDNGSLSINILTQ 128
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
E + + V P Q ++C++ +QL LV+WAK+IP F LPL+DQ
Sbjct: 129 AEAMAQQVGHVGTAH-PNRLTGKKMQNIHDVCESMKQQLLVLVEWAKYIPAFCELPLDDQ 187
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
V LLRA E L+ + RSI D +LL + E + + R+L ELV +
Sbjct: 188 VALLRAHAGEHLLLGVAKRSIPYTDFLLLGNDFIIPMHCP-ELEIARVATRILDELVKPL 246
Query: 275 REMKMDKTELGCLRTIILFNP 295
R++++D E C++ II F+P
Sbjct: 247 RDIQIDDNEYACVKAIIFFDP 267
>gi|348531377|ref|XP_003453186.1| PREDICTED: steroid hormone receptor ERR2-like [Oreochromis
niloticus]
Length = 494
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 195/382 (51%), Gaps = 45/382 (11%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH------ 56
P + V+ +S NS +S G + +SH+NG + + +P C ++
Sbjct: 84 PSSVIDTVSHHSPSGNSDASGGYVSAMNSHSNGLDSPPMFTPSGLGAGTCRKRYDDCSST 143
Query: 57 -------------------LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C
Sbjct: 144 IMEDSSIKCEYMLNSLPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 203
Query: 98 RNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIE 152
C I KR+R CQ CR+ KCL +GM +E V+ + RQ+ K R E G +
Sbjct: 204 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDTENNPYLGLTLP 263
Query: 153 MP--------VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAK 201
P V +L AE +++ +P + DI + T +C D++L ++ WAK
Sbjct: 264 PPTKKPLTKIVSHLLVAEPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAK 320
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIP F+TL L DQ+ LL++ W E+LI S RS+ +D ++ A + + G+
Sbjct: 321 HIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSLPYEDELVYAEDYIMDEEHSRLTGLLD 380
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
++ +L +LV K +++K++K E L+ I L N D ++ + V+ L++ ++ +L++Y
Sbjct: 381 LYVSIL-QLVRKYKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQDYE 439
Query: 322 RVNHSEEPGRFAKLLLRLPSLR 343
H E+P R KLL+ LP LR
Sbjct: 440 SSQHQEDPRRAGKLLMTLPLLR 461
>gi|47207654|emb|CAF91378.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 102/117 (87%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
SKH+CSICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYC
Sbjct: 116 SKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYC 175
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
RYQKCL MGMKREAVQEERQR KER +EVESTS +MPV++IL+AE V+ K E
Sbjct: 176 RYQKCLAMGMKREAVQEERQRGKERGDSEVESTSSFNEDMPVDKILDAELAVEPKTE 232
>gi|82504025|gb|ABB80452.1| estrogen receptor-related receptor beta b [Fundulus heteroclitus]
Length = 477
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/382 (32%), Positives = 196/382 (51%), Gaps = 45/382 (11%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYP-------PNHPLCGS- 54
P + V+ +S NS +S G + +SH+NG + + +P + C S
Sbjct: 67 PSSVIDTVSHHSPSGNSDASGGYVSTMNSHSNGQDSPPMFTPGGLGAGSCRKRYDDCSST 126
Query: 55 -----------------KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C
Sbjct: 127 IMEDSSIKCEYMLNSLPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 186
Query: 98 RNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIE 152
C I KR+R CQ CR+ KCL +GM +E V+ + RQ+ K R E G +
Sbjct: 187 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDTENNPYLGLTLP 246
Query: 153 MP--------VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAK 201
P V +L AE +++ +P + DI + T +C D++L ++ WAK
Sbjct: 247 PPTKKPLTKIVSHLLVAEPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAK 303
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIP F+TL L DQ+ LL++ W E+LI S RS+ +D ++ A + + G+
Sbjct: 304 HIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSLPYEDELVYAEDYIMDEEHSRLTGLLD 363
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
++ +L +LV K +++K++K E L+ I L N D ++ + V+ L++ ++ +L++Y
Sbjct: 364 LYVSIL-QLVRKYKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQDYE 422
Query: 322 RVNHSEEPGRFAKLLLRLPSLR 343
H E+P R KLL+ LP LR
Sbjct: 423 SSQHQEDPRRAGKLLMTLPLLR 444
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 158/287 (55%), Gaps = 14/287 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL +GM+REAVQ R T+ + T+G ++ L + ++ EP
Sbjct: 136 CLKVGMRREAVQRGRIPTQSYH-GQFALTNGDPLQ--CHSYLSGYISLLLRAEPYPTSRF 192
Query: 178 NEQ--------QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
Q NIC+ + LF V+WA++IP F L + DQV LLR W+EL + +
Sbjct: 193 GSQCLQNNNILGIENICELAARMLFSAVEWARNIPFFPDLQVPDQVALLRLTWSELFVLN 252
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCL 287
+ S+ V LLA ++ S V D RV E V K++ + +D E C+
Sbjct: 253 AAQCSMPVHAAPLLA-AAGLHASPMSADRVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCI 311
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+ I+LF D GL VE L+EK +LEEY R + +P RF K
Sbjct: 312 KAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGK 358
>gi|226000901|dbj|BAH36764.1| bisphenol A receptor ERRgamma2 [Homo sapiens]
Length = 435
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLAQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|405973035|gb|EKC37772.1| Retinoic acid receptor RXR-alpha-A [Crassostrea gigas]
Length = 413
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 186/350 (53%), Gaps = 48/350 (13%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
G N+ + + G + S SP C IC DR SG HY V+SCEGCKGFFK
Sbjct: 56 GVNDDTQVYTGGEDSPSNASP-------------CMICNDRGSGYHYSVFSCEGCKGFFK 102
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER-----QRTKER 138
R+V+K+L Y C+ +C+I+K RN CQYCR+ KC MGMKREAV+E+R R K+
Sbjct: 103 RSVQKNLVYTCKNEGSCVINKFTRNNCQYCRFVKCTQMGMKREAVREDRSPGGKHRNKKP 162
Query: 139 DSNEVE---STSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT------NICKAT 189
+E+ S+ G ++ +P + + + ++P + ++N + NIC +
Sbjct: 163 RLDEIRAMVSSDGEVLFVPGT---QESKPTESFEDPIMEGLINARPDLIPRVDGNICLQS 219
Query: 190 --DKQLFQ--------LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD 239
QL Q ++DWAK +P FT L LEDQ+ LL++ + EL + S+RS+
Sbjct: 220 MGINQLMQYGYAELKYIIDWAKKVPGFTELRLEDQMALLKSSFMELNVLRLSYRSMETGS 279
Query: 240 GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
I A G+ V A + G G E ++++E+ +DK E L I+L PD +
Sbjct: 280 CIKFAEGLKVPIELAQKMGWGKELVAATVEFSARLKELSIDKVEFCILNGIVLTYPDAQN 339
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEE-PG---RFAKLLLRLPSLRSI 345
L +Q V +L+ ++ L +Y HS + PG R+ K+LLRLP LR++
Sbjct: 340 LMDKQKVILLQTQILDRLRKY----HSHKFPGNVRRYGKMLLRLPFLRTV 385
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 155/284 (54%), Gaps = 10/284 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR R+C ID+ RN+CQYCR +K
Sbjct: 63 CLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRSNRDCPIDQHHRNQCQYCRLKK 122
Query: 118 CLNMGMKREAVQEERQRTKERDS-----NEVESTSG-TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+RE VQ R + N V+ +G + + + +L AE +
Sbjct: 123 CLKVGMRRE-VQRGRMSHPQTSPGQYTLNNVDPYNGHSYLTGFISLLLRAEPYPTSRYGA 181
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF ++WAK+IP F L DQV LLR W+EL + + +
Sbjct: 182 QCLQPNNIMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAA 241
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 242 QCSMPLHVAPLLA-RAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 300
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
I LF PD GL VE ++EK +LEEY R + +P RF
Sbjct: 301 IALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFG 344
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 158/302 (52%), Gaps = 31/302 (10%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYGV++CEGCK FFKR+VR++L+Y CR R+C ID+ RN+CQYCR +K
Sbjct: 53 CVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLNYTCRSNRDCQIDQHHRNQCQYCRLKK 112
Query: 118 CLNMGMKREAVQEER---------QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMK 168
C +GM++EAVQ R T N S PV ++ ++
Sbjct: 113 CFRVGMRKEAVQRGRIPPSHSSLSPSTTPVGGNAGGGVSEFYNGQPVSELISQL----LR 168
Query: 169 QEPADQDIVNEQ---------------QATNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
EP + Q +IC+ + LF +++WA++IP+F LP+ +
Sbjct: 169 AEPYPNSRYSHQYNQQMQGGGGGGSGMGIDSICELAARLLFSIIEWARNIPYFPELPVSE 228
Query: 214 QVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELV 271
QV LLR W+EL I + + ++ + LLA + S V D RV + V
Sbjct: 229 QVALLRLSWSELFILNAAQSALPLHMAPLLA-AAGFHSSPMSAERVVSFMDQVRVFQDQV 287
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K+ +++D E CL+ I LF+PD GL VE L+EK +L EY R+ + +P R
Sbjct: 288 EKLTRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQR 347
Query: 332 FA 333
F
Sbjct: 348 FG 349
>gi|197100955|ref|NP_001125696.1| estrogen-related receptor gamma [Pongo abelii]
gi|62286747|sp|Q5RAM2.1|ERR3_PONAB RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|55728900|emb|CAH91188.1| hypothetical protein [Pongo abelii]
Length = 435
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|354465166|ref|XP_003495051.1| PREDICTED: estrogen-related receptor gamma-like [Cricetulus
griseus]
Length = 460
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 127 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 186
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 187 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 246
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 247 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 303
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 304 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 362
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 363 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 422
Query: 339 LPSLR 343
LP LR
Sbjct: 423 LPLLR 427
>gi|417401691|gb|JAA47721.1| Putative estrogen-related receptor gamma [Desmodus rotundus]
Length = 480
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 147 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 206
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 207 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 266
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 267 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 323
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 324 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 382
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 383 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 442
Query: 339 LPSLR 343
LP LR
Sbjct: 443 LPLLR 447
>gi|410986501|ref|XP_003999548.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Felis catus]
Length = 435
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHVEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|281344396|gb|EFB19980.1| hypothetical protein PANDA_014989 [Ailuropoda melanoleuca]
Length = 451
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 118 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 177
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 178 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 237
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 238 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 294
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 295 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 353
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 354 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 413
Query: 339 LPSLR 343
LP LR
Sbjct: 414 LPLLR 418
>gi|51476689|emb|CAH18320.1| hypothetical protein [Homo sapiens]
Length = 435
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|42627865|ref|NP_976081.1| estrogen-related receptor gamma [Rattus norvegicus]
gi|45545427|ref|NP_996317.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|45545429|ref|NP_996318.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|197209821|ref|NP_001127757.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780852|ref|NP_001230438.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780854|ref|NP_001230439.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780856|ref|NP_001230440.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780858|ref|NP_001230441.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780860|ref|NP_001230442.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780862|ref|NP_001230443.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780864|ref|NP_001230444.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780868|ref|NP_001230448.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|344925886|ref|NP_001230721.1| estrogen-related receptor gamma isoform 2 [Mus musculus]
gi|114572632|ref|XP_001171746.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Pan
troglodytes]
gi|114572636|ref|XP_001171804.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Pan
troglodytes]
gi|114572638|ref|XP_001171818.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Pan
troglodytes]
gi|114572642|ref|XP_001171845.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Pan
troglodytes]
gi|114572654|ref|XP_001171921.1| PREDICTED: estrogen-related receptor gamma isoform 15 [Pan
troglodytes]
gi|114572660|ref|XP_001171963.1| PREDICTED: estrogen-related receptor gamma isoform 18 [Pan
troglodytes]
gi|114572662|ref|XP_001171976.1| PREDICTED: estrogen-related receptor gamma isoform 19 [Pan
troglodytes]
gi|296230100|ref|XP_002760560.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Callithrix
jacchus]
gi|296230102|ref|XP_002760561.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Callithrix
jacchus]
gi|297461167|ref|XP_002701557.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|297483948|ref|XP_002693990.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Bos taurus]
gi|332231920|ref|XP_003265145.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Nomascus
leucogenys]
gi|332231922|ref|XP_003265146.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Nomascus
leucogenys]
gi|332231924|ref|XP_003265147.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Nomascus
leucogenys]
gi|332231926|ref|XP_003265148.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Nomascus
leucogenys]
gi|332231928|ref|XP_003265149.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Nomascus
leucogenys]
gi|332231930|ref|XP_003265150.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Nomascus
leucogenys]
gi|332231932|ref|XP_003265151.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Nomascus
leucogenys]
gi|332231934|ref|XP_003265152.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Nomascus
leucogenys]
gi|332811931|ref|XP_003308795.1| PREDICTED: estrogen-related receptor gamma [Pan troglodytes]
gi|345797755|ref|XP_003434352.1| PREDICTED: estrogen-related receptor gamma [Canis lupus familiaris]
gi|358415995|ref|XP_003583267.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|358415999|ref|XP_003583268.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|359073867|ref|XP_003587102.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|359073875|ref|XP_003587103.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|390477279|ref|XP_003735266.1| PREDICTED: estrogen-related receptor gamma [Callithrix jacchus]
gi|397486138|ref|XP_003814188.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Pan paniscus]
gi|397486140|ref|XP_003814189.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Pan paniscus]
gi|397486142|ref|XP_003814190.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Pan paniscus]
gi|397486144|ref|XP_003814191.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Pan paniscus]
gi|397486146|ref|XP_003814192.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Pan paniscus]
gi|397486148|ref|XP_003814193.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Pan paniscus]
gi|397486150|ref|XP_003814194.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Pan paniscus]
gi|397486152|ref|XP_003814195.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Pan paniscus]
gi|397486154|ref|XP_003814196.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Pan
paniscus]
gi|402857197|ref|XP_003893156.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Papio anubis]
gi|402857199|ref|XP_003893157.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Papio anubis]
gi|402857201|ref|XP_003893158.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Papio anubis]
gi|402857203|ref|XP_003893159.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Papio anubis]
gi|402857205|ref|XP_003893160.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Papio anubis]
gi|402857207|ref|XP_003893161.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Papio anubis]
gi|402857209|ref|XP_003893162.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Papio anubis]
gi|402857211|ref|XP_003893163.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Papio anubis]
gi|403277499|ref|XP_003930396.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Saimiri
boliviensis boliviensis]
gi|403277503|ref|XP_003930398.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Saimiri
boliviensis boliviensis]
gi|403277505|ref|XP_003930399.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Saimiri
boliviensis boliviensis]
gi|410034447|ref|XP_003949741.1| PREDICTED: estrogen-related receptor gamma [Pan troglodytes]
gi|426239469|ref|XP_004013643.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Ovis aries]
gi|426239473|ref|XP_004013645.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Ovis aries]
gi|426333782|ref|XP_004028449.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Gorilla
gorilla gorilla]
gi|426333784|ref|XP_004028450.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Gorilla
gorilla gorilla]
gi|426333786|ref|XP_004028451.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Gorilla
gorilla gorilla]
gi|426333788|ref|XP_004028452.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Gorilla
gorilla gorilla]
gi|426333790|ref|XP_004028453.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Gorilla
gorilla gorilla]
gi|426333792|ref|XP_004028454.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Gorilla
gorilla gorilla]
gi|426333794|ref|XP_004028455.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Gorilla
gorilla gorilla]
gi|426333796|ref|XP_004028456.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Gorilla
gorilla gorilla]
gi|441612726|ref|XP_004088100.1| PREDICTED: estrogen-related receptor gamma [Nomascus leucogenys]
gi|26342927|dbj|BAC35120.1| unnamed protein product [Mus musculus]
gi|37574390|gb|AAQ93377.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574392|gb|AAQ93378.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574394|gb|AAQ93379.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574396|gb|AAQ93380.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574398|gb|AAQ93381.1| estrogen-related receptor gamma [Homo sapiens]
gi|41324140|gb|AAS00098.1| estrogen-related receptor gamma [Homo sapiens]
gi|41688062|dbj|BAD08617.1| estrogen receptor-related receptor gamma-2 [Rattus norvegicus]
gi|148681094|gb|EDL13041.1| estrogen-related receptor gamma, isoform CRA_b [Mus musculus]
gi|149040986|gb|EDL94943.1| estrogen-related receptor gamma, isoform CRA_a [Rattus norvegicus]
gi|158255326|dbj|BAF83634.1| unnamed protein product [Homo sapiens]
gi|158255492|dbj|BAF83717.1| unnamed protein product [Homo sapiens]
gi|296479334|tpg|DAA21449.1| TPA: estrogen-related receptor gamma-like isoform 2 [Bos taurus]
gi|325495519|gb|ADZ17365.1| estrogen-related nuclear receptor gamma variant 2 [Homo sapiens]
gi|344236449|gb|EGV92552.1| Estrogen-related receptor gamma [Cricetulus griseus]
Length = 435
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|216409738|dbj|BAH02306.1| estrogen-related receptor gamma [Homo sapiens]
Length = 436
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYTKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|395855482|ref|XP_003800188.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Otolemur
garnettii]
gi|395855484|ref|XP_003800189.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Otolemur
garnettii]
Length = 435
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|74006022|ref|XP_858551.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Canis lupus
familiaris]
gi|291402394|ref|XP_002717555.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Oryctolagus
cuniculus]
gi|297461169|ref|XP_002701558.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|297483950|ref|XP_002693991.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Bos taurus]
gi|426239471|ref|XP_004013644.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Ovis aries]
gi|296479335|tpg|DAA21450.1| TPA: estrogen-related receptor gamma-like isoform 3 [Bos taurus]
Length = 441
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 108 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 167
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 168 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 227
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 228 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 284
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 285 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 343
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 344 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 403
Query: 339 LPSLR 343
LP LR
Sbjct: 404 LPLLR 408
>gi|410912218|ref|XP_003969587.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 475
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 171/314 (54%), Gaps = 27/314 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 135 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 194
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------------- 154
+ KCL +GM RE V+ + RQ+ K R + + +P
Sbjct: 195 FMKCLTVGMLREGVRLDRVRGGRQKYKRRIDADNSPYLNPQLALPAKKPFAFGCLADNKI 254
Query: 155 VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
V +L AE +++ +P D DI + T +C D++L + WAKHIP F+TL L
Sbjct: 255 VSHLLVAEPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVNIGWAKHIPGFSTLSL 311
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 312 ADQMSLLQSAWMEILILRVVYRSLSFEDKLVYAEDYIMDEDQSKLAGLLDLNNSIL-QLV 370
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K R MK++K E L+ I L N D ++ V+ L++ ++ +L++Y H E+P R
Sbjct: 371 KKYRTMKLEKEEFVTLKAIALANSDSMHIEDVDAVQKLQDVLHEALQDYEASQHQEDPRR 430
Query: 332 FAKLLLRLPSLRSI 345
K+L+ LP LR I
Sbjct: 431 AGKMLMTLPLLRQI 444
>gi|417410730|gb|JAA51831.1| Putative estrogen-related receptor gamma, partial [Desmodus
rotundus]
Length = 441
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 108 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 167
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 168 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 227
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 228 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 284
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 285 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 343
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 344 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 403
Query: 339 LPSLR 343
LP LR
Sbjct: 404 LPLLR 408
>gi|410986503|ref|XP_003999549.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Felis catus]
Length = 441
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 108 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 167
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 168 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 227
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 228 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 284
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 285 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 343
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 344 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHVEDPRRAGKMLMT 403
Query: 339 LPSLR 343
LP LR
Sbjct: 404 LPLLR 408
>gi|301780106|ref|XP_002925470.1| PREDICTED: estrogen-related receptor gamma-like [Ailuropoda
melanoleuca]
Length = 500
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 167 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 226
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 227 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 286
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 287 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 343
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 344 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 402
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 403 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 462
Query: 339 LPSLR 343
LP LR
Sbjct: 463 LPLLR 467
>gi|55741600|ref|NP_001007082.1| estrogen-related receptor gamma [Gallus gallus]
gi|449495784|ref|XP_002191124.2| PREDICTED: estrogen-related receptor gamma [Taeniopygia guttata]
gi|54399978|gb|AAV34214.1| nuclear receptor subfamily 3 group B member 3 [Gallus gallus]
Length = 435
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|395531379|ref|XP_003767757.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Sarcophilus
harrisii]
Length = 458
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|37574388|gb|AAQ93376.1| estrogen-related receptor gamma [Homo sapiens]
Length = 458
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|410986499|ref|XP_003999547.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Felis catus]
Length = 458
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHVEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|40788377|dbj|BAA74855.2| KIAA0832 protein [Homo sapiens]
Length = 469
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 136 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 195
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 196 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 255
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 256 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 312
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 313 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 371
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 372 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 431
Query: 339 LPSLR 343
LP LR
Sbjct: 432 LPLLR 436
>gi|6753774|ref|NP_036065.1| estrogen-related receptor gamma isoform1 [Mus musculus]
gi|45545433|ref|NP_001429.2| estrogen-related receptor gamma isoform 1 [Homo sapiens]
gi|74006012|ref|XP_849276.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Canis lupus
familiaris]
gi|76636896|ref|XP_871260.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Bos taurus]
gi|114572622|ref|XP_514199.2| PREDICTED: estrogen-related receptor gamma isoform 22 [Pan
troglodytes]
gi|149743802|ref|XP_001489611.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Equus
caballus]
gi|291402392|ref|XP_002717554.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Oryctolagus
cuniculus]
gi|296230098|ref|XP_002760559.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Callithrix
jacchus]
gi|297483946|ref|XP_002693989.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Bos taurus]
gi|332231918|ref|XP_003265144.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Nomascus
leucogenys]
gi|397486136|ref|XP_003814187.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Pan paniscus]
gi|402857195|ref|XP_003893155.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Papio anubis]
gi|403277501|ref|XP_003930397.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
gi|426239467|ref|XP_004013642.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Ovis aries]
gi|426333780|ref|XP_004028448.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Gorilla
gorilla gorilla]
gi|50400205|sp|P62510.1|ERR3_RAT RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|50402102|sp|P62508.1|ERR3_HUMAN RecName: Full=Estrogen-related receptor gamma; AltName: Full=ERR
gamma-2; AltName: Full=Estrogen receptor-related protein
3; AltName: Full=Nuclear receptor subfamily 3 group B
member 3
gi|50402103|sp|P62509.1|ERR3_MOUSE RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|5726228|gb|AAD48369.1|AF117254_1 estrogen receptor related protein 3 [Mus musculus]
gi|4092075|gb|AAC99410.1| nuclear receptor ERRG2 [Homo sapiens]
gi|41688060|dbj|BAD08616.1| estrogen receptor-related receptor gamma-1 [Rattus norvegicus]
gi|51895995|gb|AAH82324.1| Estrogen-related receptor gamma [Mus musculus]
gi|119613741|gb|EAW93335.1| estrogen-related receptor gamma [Homo sapiens]
gi|148681093|gb|EDL13040.1| estrogen-related receptor gamma, isoform CRA_a [Mus musculus]
gi|149040987|gb|EDL94944.1| estrogen-related receptor gamma, isoform CRA_b [Rattus norvegicus]
gi|158256726|dbj|BAF84336.1| unnamed protein product [Homo sapiens]
gi|168267608|dbj|BAG09860.1| estrogen-related receptor gamma [synthetic construct]
gi|296479333|tpg|DAA21448.1| TPA: estrogen-related receptor gamma-like isoform 1 [Bos taurus]
gi|325495517|gb|ADZ17364.1| estrogen-related nuclear receptor gamma variant 1 [Homo sapiens]
Length = 458
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|327262519|ref|XP_003216071.1| PREDICTED: estrogen-related receptor gamma-like [Anolis
carolinensis]
Length = 441
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 108 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 167
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 168 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 227
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 228 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 284
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 285 QSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 343
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 344 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 403
Query: 339 LPSLR 343
LP LR
Sbjct: 404 LPLLR 408
>gi|449272001|gb|EMC82132.1| Estrogen-related receptor gamma, partial [Columba livia]
Length = 442
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 109 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 168
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 169 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 228
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 229 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 285
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 286 QSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 344
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 345 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 404
Query: 339 LPSLR 343
LP LR
Sbjct: 405 LPLLR 409
>gi|109018278|ref|XP_001105251.1| PREDICTED: estrogen-related receptor gamma-like isoform 8 [Macaca
mulatta]
Length = 458
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|334322082|ref|XP_001375146.2| PREDICTED: estrogen-related receptor gamma-like [Monodelphis
domestica]
Length = 479
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 146 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 205
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 206 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 265
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 266 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 322
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 323 QSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 381
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 382 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 441
Query: 339 LPSLR 343
LP LR
Sbjct: 442 LPLLR 446
>gi|395855480|ref|XP_003800187.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Otolemur
garnettii]
Length = 458
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|348577023|ref|XP_003474284.1| PREDICTED: estrogen-related receptor gamma-like [Cavia porcellus]
Length = 456
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 123 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 182
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 183 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 242
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 243 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 299
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 300 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 358
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 359 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 418
Query: 339 LPSLR 343
LP LR
Sbjct: 419 LPLLR 423
>gi|344296432|ref|XP_003419911.1| PREDICTED: estrogen-related receptor gamma-like [Loxodonta
africana]
Length = 466
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 133 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 192
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 193 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 252
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 253 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 309
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 310 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 368
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 369 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 428
Query: 339 LPSLR 343
LP LR
Sbjct: 429 LPLLR 433
>gi|157278575|ref|NP_001098388.1| estrogen-related receptor beta type 1 [Oryzias latipes]
gi|146395238|gb|ABQ24186.1| estrogen-related receptor beta type 1 [Oryzias latipes]
Length = 433
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 45/382 (11%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH------ 56
P + V+ +S NS +S G + +SH+NG + + +P C ++
Sbjct: 23 PSSVIDTVSHHSPSGNSDASGGYVSTMNSHSNGLDSPPMFTPSGLGAGTCRKRYDDCSST 82
Query: 57 -------------------LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C
Sbjct: 83 IMEDSSIKCEYMLNSLPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 98 RNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIE 152
C I KR+R CQ CR+ KCL +GM +E V+ + RQ+ K R +E G +
Sbjct: 143 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENNPYLGLTLP 202
Query: 153 MP--------VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAK 201
P V +L AE +++ +P + DI + T +C D++L ++ WAK
Sbjct: 203 PPTKKPLTKIVSHLLVAEPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAK 259
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIP F+TL L DQ+ LL++ W E+LI S RS+ +D ++ A + + G+
Sbjct: 260 HIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSLPYEDELVYAEDYIMDEEHSRLTGLLD 319
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
++ +L +LV K +++K++K E L+ I L N D ++ + V+ L++ ++ +L+++
Sbjct: 320 LYVSIL-QLVRKYKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQDFE 378
Query: 322 RVNHSEEPGRFAKLLLRLPSLR 343
H E+P R KLL+ LP LR
Sbjct: 379 CSQHQEDPRRAGKLLMTLPLLR 400
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 169/318 (53%), Gaps = 39/318 (12%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQYCRYQ 116
C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ CR +
Sbjct: 248 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVGMGMCPVDKAHRNQCQACRLK 307
Query: 117 KCLNMGMKREAVQEERQ-RTKER---DSNEVES------------TSGTLIEMP------ 154
KCL GM ++AVQ ERQ R+ + DS E ES +G + P
Sbjct: 308 KCLQAGMNQDAVQNERQPRSTAQVRLDSAESESEPRPKLQAATPTLAGPMARGPTPVTRA 367
Query: 155 -----VERILEAEQRVDMKQEPADQDI----------VNEQQATNICKATDKQLFQLVDW 199
++ ++ AE ++ E A+++I V+ ++ + + + LF V W
Sbjct: 368 LSHQFLDSLITAETCAKLEPEDAEENIDVTSNDPEFPVSPCSLDSVQETSARLLFMAVKW 427
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG-VTVYRSSAHEAG 258
AK++P + LP DQV+LL W EL + S+ + LLAP + SS
Sbjct: 428 AKNLPVLSNLPFRDQVILLEEAWGELFLLGAIQWSLPLDSCPLLAPAEASAAGSSQGRLA 487
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
+ + R L E V++ R + +D TE C++ +ILF P+ GLK + VE L+++ L
Sbjct: 488 LASVERRFLQETVARFRALAVDPTEFACMKALILFKPETPGLKDPEHVEALQDQSQMMLS 547
Query: 319 EYTRVNHSEEPGRFAKLL 336
++T+ +H +P RF KLL
Sbjct: 548 QHTKAHHPSQPMRFGKLL 565
>gi|290566743|gb|ADD39721.1| estrogen-related receptor beta [Larimichthys crocea]
Length = 433
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 45/382 (11%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH------ 56
P + V+ +S NS +S G + +SH+NG + + +P C ++
Sbjct: 23 PSSVIDTVSHHSPSGNSDASGGYVSAMNSHSNGLDSPPMFTPSGLGAGTCRKRYDDCSST 82
Query: 57 -------------------LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C
Sbjct: 83 IMEDSSIKCEYMLNSLPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 98 RNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIE 152
C I KR+R CQ CR+ KCL +GM +E V+ + RQ+ K R +E G +
Sbjct: 143 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENNPYLGLTLP 202
Query: 153 MP--------VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAK 201
P V +L AE +++ +P + DI + T +C D++L ++ WAK
Sbjct: 203 PPTKKPLTKIVSHLLVAEPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAK 259
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIP F++L L DQ+ LL++ W E+LI S RS+ +D ++ A + + G+
Sbjct: 260 HIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSLPYEDELVYAEDYIMDEEHSRLTGLLD 319
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
++ +L +LV K +++K++K E L+ I L N D ++ + V+ L++ ++ +L++Y
Sbjct: 320 LYVSIL-QLVRKCKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQDYE 378
Query: 322 RVNHSEEPGRFAKLLLRLPSLR 343
H E+P R KLL+ LP LR
Sbjct: 379 SGQHVEDPRRAGKLLMTLPLLR 400
>gi|380799429|gb|AFE71590.1| estrogen-related receptor gamma isoform 2, partial [Macaca mulatta]
Length = 403
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 70 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 129
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 130 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 189
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 190 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 246
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 247 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 305
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 306 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 365
Query: 339 LPSLR 343
LP LR
Sbjct: 366 LPLLR 370
>gi|154147724|ref|NP_001093680.1| estrogen-related receptor gamma [Xenopus (Silurana) tropicalis]
gi|134024290|gb|AAI36152.1| esrrg protein [Xenopus (Silurana) tropicalis]
Length = 435
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGIVNRSLSFEDELVYAEDYIMDEDQSKLAGLLELNNAIL-QLVKKYKTMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R KLL+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDIEAVQKLQDVLHEALQDYEAGQHIEDPRRAGKLLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|197304231|dbj|BAG69193.1| retinoid X receptor gamma [Coturnix japonica]
Length = 122
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 103/118 (87%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 1 AKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYC 60
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP 171
RYQKCL MGMKREAVQEERQR++ER NE ESTSG +MPVERILEAE V+ K E
Sbjct: 61 RYQKCLAMGMKREAVQEERQRSRERSENEAESTSGGSEDMPVERILEAELAVEPKTEA 118
>gi|71040966|gb|AAZ20374.1| RXRg nuclear hormone receptor [Gecarcinus lateralis]
Length = 233
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 128/182 (70%), Gaps = 7/182 (3%)
Query: 1 MKPDTATLL---VNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ PDT +LL +F + G + S + + +N +S S+ S YPP H L GSKHL
Sbjct: 13 VAPDTVSLLSPAPSFTANGGPASPSIPTPPFTIGSSNTTSLSTSPSQYPPTH-LSGSKHL 71
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+C IDKRQRNRCQYCRYQK
Sbjct: 72 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQK 131
Query: 118 CLNMGMKREAVQEER-QRTK-ERDSNEVESTSGTLIEMPVERILEAEQRVD-MKQEPADQ 174
CL MGMKREA R Q TK ++ + ES+ G + +MP+ I EAE VD + ++P DQ
Sbjct: 132 CLTMGMKREAAGHRRGQWTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQ 191
Query: 175 DI 176
+
Sbjct: 192 GV 193
>gi|40352779|gb|AAH64700.1| ESRRG protein [Homo sapiens]
gi|167773133|gb|ABZ92001.1| estrogen-related receptor gamma [synthetic construct]
gi|190690365|gb|ACE86957.1| estrogen-related receptor gamma protein [synthetic construct]
gi|190691747|gb|ACE87648.1| estrogen-related receptor gamma protein [synthetic construct]
Length = 442
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 218
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 219 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 278
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 279 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 337
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 338 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 397
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 398 AGKMLMTLPLLR 409
>gi|348536345|ref|XP_003455657.1| PREDICTED: steroid hormone receptor ERR2-like [Oreochromis
niloticus]
Length = 446
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 113 KRLCLVCGDTASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 172
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMPVER----------IL 159
+ KCL +GM +E V+ + RQ+ K R E + G + P ++ ++
Sbjct: 173 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDAENGAYLGLTLPPPAKKPLTKIVSHLLVV 232
Query: 160 EAEQRVDMKQEP-ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E E+ M D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 233 EPEKIYAMPDPTMPDGDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 289
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+L+ S RS+ +D I+ A V A +G+ + +L LV + ++++
Sbjct: 290 QSAWMEILVLSIVFRSLPCEDEIMYAEDYVVDEEQARISGLLDLHVAILP-LVRRYKKLR 348
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
M+K E L+ I L N D +++ + V+ L++ ++ +L+++ H E+P R KLL+
Sbjct: 349 MEKEEFVTLKAIALSNSDSMHIENIEAVQRLQDSLHEALQDFEGSQHPEDPRRAGKLLMT 408
Query: 339 LPSLR 343
LP LR
Sbjct: 409 LPLLR 413
>gi|402857213|ref|XP_003893164.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Papio
anubis]
Length = 470
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 130 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 189
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 190 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 246
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 247 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 306
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 307 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 365
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 366 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 425
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 426 AGKMLMTLPLLR 437
>gi|224486339|gb|ACN51936.1| ultraspiracle [Daphnia magna]
Length = 111
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 99/111 (89%)
Query: 47 PNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQ 106
PNHPL SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R C+IDKRQ
Sbjct: 1 PNHPLSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQ 60
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVER 157
RNRCQYCRYQKCL MGMKREAVQEERQR KE+ ++++TSG +MP++R
Sbjct: 61 RNRCQYCRYQKCLQMGMKREAVQEERQRNKEKGEMDMDATSGGQGDMPIDR 111
>gi|355745913|gb|EHH50538.1| hypothetical protein EGM_01388, partial [Macaca fascicularis]
Length = 453
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 113 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 172
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 173 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 229
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 230 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 289
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 290 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 348
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 349 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 408
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 409 AGKMLMTLPLLR 420
>gi|441612729|ref|XP_004088101.1| PREDICTED: estrogen-related receptor gamma [Nomascus leucogenys]
Length = 470
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 130 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 189
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 190 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 246
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 247 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 306
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 307 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 365
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 366 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 425
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 426 AGKMLMTLPLLR 437
>gi|343780866|ref|NP_001230447.1| estrogen-related receptor gamma isoform 6 [Homo sapiens]
gi|114572628|ref|XP_001171730.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Pan
troglodytes]
gi|397486156|ref|XP_003814197.1| PREDICTED: estrogen-related receptor gamma isoform 11 [Pan
paniscus]
gi|426333798|ref|XP_004028457.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Gorilla
gorilla gorilla]
Length = 470
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 130 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 189
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 190 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 246
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 247 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 306
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 307 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 365
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 366 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 425
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 426 AGKMLMTLPLLR 437
>gi|109018286|ref|XP_001104646.1| PREDICTED: estrogen-related receptor gamma-like isoform 1 [Macaca
mulatta]
gi|355558765|gb|EHH15545.1| hypothetical protein EGK_01652 [Macaca mulatta]
Length = 470
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 174/312 (55%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 130 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 189
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
+ KCL +GM +E V+ +R R +++ +++ + + ++++ ++ + +PAD
Sbjct: 190 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLN---PQLVQPAKKPLLWSDPAD 246
Query: 174 QDIVNE----------------------QQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
IV+ + T +C D++L ++ WAKHIP F+TL L
Sbjct: 247 NKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 306
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 307 ADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLV 365
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 366 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRR 425
Query: 332 FAKLLLRLPSLR 343
K+L+ LP LR
Sbjct: 426 AGKMLMTLPLLR 437
>gi|47230214|emb|CAG10628.1| unnamed protein product [Tetraodon nigroviridis]
Length = 437
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 194/381 (50%), Gaps = 45/381 (11%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKH------ 56
P + V+ +S NS +S G + +SH+NG + + +P C ++
Sbjct: 27 PSSVIDTVSHHSPSGNSDASGGYVSAMNSHSNGLDSPPMFTPGGLGASACRKRYDDCSST 86
Query: 57 -------------------LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C
Sbjct: 87 IMEDSSIKCEYMLNSLPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 146
Query: 98 RNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIE 152
C I KR+R CQ CR+ KCL +GM +E V+ + RQ+ K R E G +
Sbjct: 147 NECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDTENNPYLGLTLP 206
Query: 153 MP--------VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAK 201
P V +L AE +++ +P + DI + T +C D++L ++ WAK
Sbjct: 207 PPTKKPLTKIVSHLLVAEPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAK 263
Query: 202 HIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGG 261
HIP F++L L DQ+ LL++ W E+LI S RS+ +D ++ A + + G+
Sbjct: 264 HIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSLPYEDELVYAEDYIMDEEHSRLTGLLD 323
Query: 262 IFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT 321
++ +L +LV K +++K++K E L+ I L N D ++ + V+ L++ ++ +L++Y
Sbjct: 324 LYVSIL-QLVRKFKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQDYE 382
Query: 322 RVNHSEEPGRFAKLLLRLPSL 342
H E+P R KLL+ LP L
Sbjct: 383 NGQHQEDPRRAGKLLMTLPLL 403
>gi|26006215|dbj|BAC41450.1| mKIAA0832 protein [Mus musculus]
Length = 466
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FF RT++ ++ Y+C C I KR+R CQ CR
Sbjct: 133 KRLCLVCGDIASGYHYGVASCEACKAFFNRTIQGNIEYSCPATNECEITKRRRKSCQACR 192
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 193 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 252
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 253 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 309
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 310 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 368
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 369 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 428
Query: 339 LPSLR 343
LP LR
Sbjct: 429 LPLLR 433
>gi|327275487|ref|XP_003222505.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 2 [Anolis
carolinensis]
Length = 458
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 193/359 (53%), Gaps = 21/359 (5%)
Query: 6 ATLLVNFNSGGANSMSSFGSNNHSSSHNNG-----SSNSSIISPYPPNHPLCGSKHLCSI 60
A L+ + G N S+ N H +S N+ +S+ I+ P PL C +
Sbjct: 28 ACLIQDKRPGNPNPYSTPVRNQHWNSSNHSIETQSTSSEEIVPSPPSPPPLPRIYKPCFV 87
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QKC
Sbjct: 88 CQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFE 147
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA-------- 172
+GM +E+V+ +R + K++D+ + E + +I VE ++E ++ + PA
Sbjct: 148 VGMSKESVRNDRNK-KKKDAPKQECSESYIITPEVEDLIEKVRKAHQETFPALCQLGKYT 206
Query: 173 -----DQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
DQ + ++ + + K + + V++AK +P FTTL + DQ+ LL+A ++L
Sbjct: 207 TNNSSDQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 266
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
I R +D + + G+T+ R+ H AG G + D V +++ ++MD E G
Sbjct: 267 ILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGL 325
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 326 LSAICLICGDRQDLEQPDRVDKLQEPLLEALKIYVRKRRPSKPHMFPKMLMKITDLRSI 384
>gi|47224289|emb|CAG09135.1| unnamed protein product [Tetraodon nigroviridis]
Length = 434
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 101 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 160
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMPVER----------IL 159
+ KCL +GM +E V+ + RQ+ K R +E + G I P ++ ++
Sbjct: 161 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENGAYLGLTIPPPAKKPLTKIVSHLLVV 220
Query: 160 EAEQRVDMKQEP-ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E E+ M D D+ + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 221 EPEKIYAMPDPTMPDGDV---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 277
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+L+ S RS+ +D I+ A V A +G+ + +L L + ++++
Sbjct: 278 QSAWMEILVLSIVFRSLPCEDEIVYAEDYVVDEEQARISGLLDLHVAILP-LARRYKKLR 336
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
M+K E L+ I L N D +++ + V+ L++ ++ +L+++ H E+P R KLL+
Sbjct: 337 MEKEEFVSLKAIALANSDSMHIENIEAVQRLQDSLHEALQDFEGSQHPEDPRRAGKLLMT 396
Query: 339 LPSLR 343
LP LR
Sbjct: 397 LPLLR 401
>gi|3335518|gb|AAC39899.1| estrogen-related receptor gamma [Homo sapiens]
Length = 436
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FKR ++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKASFKRKIQANIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDCADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI F +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGFVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
>gi|37222638|gb|AAQ90023.1| estrogen receptor-related receptor gamma [Rattus norvegicus]
Length = 458
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 170/305 (55%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 125 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 184
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 185 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 244
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++ ++ WAKHIP F+TL L DQ+ LL
Sbjct: 245 EPEKIYAMPDPTVPDSDI---KALTTLCDLADREWVVIIGWAKHIPGFSTLSLADQMSLL 301
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 302 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 360
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 361 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 420
Query: 339 LPSLR 343
LP LR
Sbjct: 421 LPLLR 425
>gi|302129672|ref|NP_001098389.2| estrogen-related receptor gamma type 1 [Oryzias latipes]
gi|302125469|gb|ABQ24188.2| estrogen-related receptor gamma type 1 [Oryzias latipes]
Length = 445
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/312 (35%), Positives = 170/312 (54%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 105 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 164
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------------- 154
+ KCL +GM RE V+ + RQ+ K R + + +P
Sbjct: 165 FMKCLTVGMLREGVRLDRVRGGRQKYKRRIDADNSPYLNPQLALPPKKPFAFGCLADNKI 224
Query: 155 VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
V +L AE +++ +P D DI + T +C D++L + WAKHIP F+TL L
Sbjct: 225 VSHLLVAEPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVNIGWAKHIPGFSTLSL 281
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV
Sbjct: 282 ADQMSLLQSAWMEILILRVVYRSLSFEDKLVYAEDYIMDEDQSKLAGLLDLNNAIL-QLV 340
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ V+ L++ ++ +L++Y H E+P R
Sbjct: 341 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVDAVQKLQDVLHEALQDYEASQHQEDPRR 400
Query: 332 FAKLLLRLPSLR 343
KLL+ LP LR
Sbjct: 401 GGKLLMTLPLLR 412
>gi|327275485|ref|XP_003222504.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 1 [Anolis
carolinensis]
Length = 461
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K++D+ + E + +I VE ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKDAPKQECSESYIITPEVEDLIEKVRKAHQETFPALCQLG 206
Query: 173 --------DQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
DQ + ++ + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSDQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDKLQEPLLEALKIYVRKRRPSKPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|410916557|ref|XP_003971753.1| PREDICTED: steroid hormone receptor ERR2-like [Takifugu rubripes]
Length = 441
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 108 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 167
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMPVER----------IL 159
+ KCL +GM +E V+ + RQ+ K R +E + G I P ++ ++
Sbjct: 168 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENGAYLGLTIPPPAKKPLTKIVSHLLVV 227
Query: 160 EAEQRVDMKQEP-ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E E+ M D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 228 EPEKIYAMPDPTMPDGDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 284
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+L+ S RS+ ++ I+ A V A +G+ + +L LV + ++++
Sbjct: 285 QSAWMEILVLSIVFRSLPCEEEIVYAEDYVVDEEHARISGLLDLHVAILP-LVRRYKKLR 343
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
M+K E L+ I L N D +++ + V+ L++ ++ +L+++ H E+P R KLL+
Sbjct: 344 MEKEEFVSLKAIALANSDSMHIENIEAVQRLQDSLHEALQDFEGSQHPEDPRRAGKLLMT 403
Query: 339 LPSLR 343
LP LR
Sbjct: 404 LPLLR 408
>gi|251823756|ref|NP_001156563.1| estrogen-related receptor beta type 2 [Oryzias latipes]
gi|146395240|gb|ABQ24187.1| estrogen-related receptor beta type 2 [Oryzias latipes]
Length = 431
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 172/307 (56%), Gaps = 24/307 (7%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 98 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 157
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEM--------PVERILE----- 160
+ KCL +GM +E V+ +R R +++ ++S +G + + P+ +I+
Sbjct: 158 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENGAYLTLSIPPPAKKPLTKIVSHLLVV 217
Query: 161 AEQRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
+++ +P D D+ + T +C D++L ++ WAKHIP F TL L DQ+ LL
Sbjct: 218 EPEKIYAMPDPTMPDGDV---KALTTLCDLADRELVVIIGWAKHIPGFATLSLADQMSLL 274
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR--VLTELVSKMRE 276
++ W E+L+ S RS+ D I+ A V +A + G+ D + LV + ++
Sbjct: 275 QSAWMEILVLSIVFRSLPCDDEIVYAEDYVV---DEEQARISGLLDLHVAIVPLVRRYKK 331
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
++M+K E L+ I L N D +++ + V+ L++ ++ +L+++ H E+P R KLL
Sbjct: 332 LRMEKEEFVMLKAIALANSDSMHIENIEAVQKLQDSLHEALQDFEASQHPEDPRRVGKLL 391
Query: 337 LRLPSLR 343
+ LP LR
Sbjct: 392 MTLPLLR 398
>gi|355717628|gb|AES06000.1| retinoid X receptor, beta [Mustela putorius furo]
Length = 159
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 107/125 (85%)
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MD
Sbjct: 1 GWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMD 60
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP
Sbjct: 61 KTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLP 120
Query: 341 SLRSI 345
+LRSI
Sbjct: 121 ALRSI 125
>gi|148707596|gb|EDL39543.1| nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 451
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 184/316 (58%), Gaps = 29/316 (9%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C E +NC IDK QR RC YCR++
Sbjct: 106 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCPYCRFK 165
Query: 117 KCLNMGMKRE--AVQEE--------------RQRTKERDSNEVESTSGTLIEM----PVE 156
KC+++GMK E A++ E +N S ++E+ P E
Sbjct: 166 KCIDVGMKLEGRAIKSEYPDPYSSSPESMMGYSYMDGYQTNSPASIPHLILELLKCEPDE 225
Query: 157 RILEAEQRVDMKQEPADQDIVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
++A+ ++QE ++++ + A +CK D+ LF +V+WA+ F L ++DQ+
Sbjct: 226 PQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKVDDQM 285
Query: 216 LLLRAGWNELLIASFSHRSISV-KDG-ILLAPGVTV-YRSSAHEAGVGGIFDRVLT---E 269
LL+ W+ELLI +R ++ K+G I L G V Y + V F+ +L+ E
Sbjct: 286 KLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVA--FNNLLSLAQE 343
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV ++R ++ D+ E CL+ ++LF+ DV+ L++ Q+VE ++E+V +L +YT N+ ++
Sbjct: 344 LVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQT 403
Query: 330 GRFAKLLLRLPSLRSI 345
+F +LLLRLP +R+I
Sbjct: 404 EKFGQLLLRLPEIRAI 419
>gi|133488|sp|P18514.1|RARA_NOTVI RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|64126|emb|CAA35602.1| retinoic acid receptor alpha [Notophthalmus viridescens]
gi|226520|prf||1516344A retinoic acid receptor alpha
Length = 458
Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 171/302 (56%), Gaps = 15/302 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C + CII+K RNRCQYCR QK
Sbjct: 87 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQK 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K++++ + E T +I VE ++E ++ + PA
Sbjct: 147 CFEVGMSKESVRNDRNKKKKQEAPKQECTESYIITPEVEDLVEKVRKAHQETFPALCQLG 206
Query: 173 ---DQDIVNEQQATNI------CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ E+ + +I + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|345329478|ref|XP_003431382.1| PREDICTED: estrogen-related receptor gamma-like isoform 2
[Ornithorhynchus anatinus]
Length = 345
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 25/310 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 7 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 66
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP-------------VE 156
+ KCL +GM +E V+ + RQ+ K R E + P V
Sbjct: 67 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPCKYMKYNKIVS 126
Query: 157 RILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
+L AE +++ +P D DI + T +C D++L ++ WAKHIP F+TL L D
Sbjct: 127 HLLVAEPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLAD 183
Query: 214 QVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
Q+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K
Sbjct: 184 QMSLLQSAWMEILILGVVYRSLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAIL-QLVKK 242
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
+ MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R
Sbjct: 243 YKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG 302
Query: 334 KLLLRLPSLR 343
K+L+ LP LR
Sbjct: 303 KMLMTLPLLR 312
>gi|45383107|ref|NP_989867.1| retinoic acid receptor alpha [Gallus gallus]
gi|17367590|sp|Q90966.1|RARA_CHICK RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|1089844|emb|CAA52152.1| retinoic acid receptor alpha 1 isoform [Gallus gallus]
Length = 460
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K++D + E + ++ VE ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKDVPKTECSESYIVTPEVEELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|45479148|gb|AAS66635.1| estrogen-related receptor beta [Danio rerio]
Length = 340
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 173/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 7 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 66
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + G + P V +L A
Sbjct: 67 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRMDAENTAYLGLTLPPPAKKPLTKIVSHLLVA 126
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P + DI + T +C D++L ++ WAKHIP F++L L DQ+ LL
Sbjct: 127 EPEKIYAMPDPTMPESDI---KALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLL 183
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI S RS+ +D ++ A + + G+ ++ +L +LV K +++K
Sbjct: 184 QSAWMEILILSIVFRSLPYEDELVYAEDYVMDEEHSRLTGLLDLYLSIL-QLVRKYKKLK 242
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H+E+P R KLL+
Sbjct: 243 VEKEEFVTLKAIALANSDSMHIEDVESVQKLQDALHEALQDYESCQHAEDPRRAGKLLMT 302
Query: 339 LPSLR 343
LP LR
Sbjct: 303 LPLLR 307
>gi|64124|emb|CAA78621.1| retinoic acid receptor alpha 2 [Notophthalmus viridescens]
Length = 452
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 171/302 (56%), Gaps = 15/302 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C + CII+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K++++ + E T +I VE ++E ++ + PA
Sbjct: 141 CFEVGMSKESVRNDRNKKKKQEAPKQECTESYIITPEVEDLVEKVRKAHQETFPALCQLG 200
Query: 173 ---DQDIVNEQQATNI------CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ E+ + +I + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 201 KYTTNNSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 260
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 261 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 319
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 320 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLR 379
Query: 344 SI 345
SI
Sbjct: 380 SI 381
>gi|348534128|ref|XP_003454555.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 502
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 169/312 (54%), Gaps = 27/312 (8%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 162 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 221
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------------- 154
+ KCL +GM RE V+ + RQ+ K R + + +P
Sbjct: 222 FMKCLTVGMLREGVRLDRVRGGRQKYKRRIDADNSPYLNPQLALPPKKPFAFGCLADNKI 281
Query: 155 VERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
V +L AE +++ +P D DI + T +C D++L + WAKHIP F+TL L
Sbjct: 282 VSHLLVAEPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVNIGWAKHIPGFSTLSL 338
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQ+ LL++ W E+LI +RS+ +D ++ A + + AG+ + + +L +LV
Sbjct: 339 ADQMSLLQSAWMEILILRVVYRSLPFEDKLVYAEDYIMDEDQSKLAGLLDLNNAIL-QLV 397
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K + MK++K E L+ I L N D ++ V+ L++ ++ +L++Y H E+P R
Sbjct: 398 KKYKSMKLEKEEFVTLKAIALANSDSMHIEDVDAVQKLQDVLHEALQDYEASQHQEDPRR 457
Query: 332 FAKLLLRLPSLR 343
KLL+ LP LR
Sbjct: 458 AGKLLMTLPLLR 469
>gi|930012|emb|CAA37459.1| chorion factor CF1 [Drosophila melanogaster]
Length = 280
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/204 (50%), Positives = 122/204 (59%), Gaps = 50/204 (24%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 77 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 136
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 137 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGG 196
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 197 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 256
Query: 176 IVNEQQATN-ICKATDKQLFQLVD 198
+ + A + +C+ +KQLFQ+V+
Sbjct: 257 QPDYKGAVSALCQVVNKQLFQMVE 280
>gi|449675912|ref|XP_004208516.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Hydra
magnipapillata]
Length = 407
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 173/328 (52%), Gaps = 23/328 (7%)
Query: 40 SIISPYPPNH--------PLCGSKH----LCSICGDRASGKHYGVYSCEGCKGFFKRTVR 87
+IIS PP+ P+ ++H LC +C D+ASG HYGV SCEGCK FFKR+++
Sbjct: 46 NIISSSPPSEKGLVQNKRPMTNARHAVPMLCLVCTDKASGYHYGVPSCEGCKAFFKRSLQ 105
Query: 88 -KDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA-------VQEERQRTKERD 139
K L+Y C NC I+K R CQ CR KC +GM +E +++ + + R
Sbjct: 106 LKQLNYKCPASNNCTINKMSRKCCQACRLGKCHAVGMSKECKKVKKRDIRDTKSKNYPRL 165
Query: 140 SNEVESTSGTL--IEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLV 197
N E L +E+ E I+E + K + VN KQL ++
Sbjct: 166 ENPDECIESVLTPLEIEHENIIEQLRLTHSKLYLGLDETVNGTLTHKFYGTIGKQLIHII 225
Query: 198 DWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257
DWAK IP +++L L DQ +LL+A W EL++A++ SI+ + + L+ + + + E
Sbjct: 226 DWAKRIPGYSSLILSDQAVLLQATWVELMVANWLFLSITSTNSLKLSHTFDISKQDSTEL 285
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
G G I+D+ L LV + + K+D+ E+ C + IIL N + L V L + +SL
Sbjct: 286 GFGLIYDQFLA-LVHRTKGYKLDEEEISCFKAIILTNAETTQLSRPAKVHALSNQFCSSL 344
Query: 318 EEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ YT+ H E P +FAK++L LP L+ +
Sbjct: 345 QYYTKNRHKENPLKFAKIVLILPQLKYL 372
>gi|195046041|ref|XP_001992077.1| GH24408 [Drosophila grimshawi]
gi|193892918|gb|EDV91784.1| GH24408 [Drosophila grimshawi]
Length = 528
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/90 (94%), Positives = 87/90 (96%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 104 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 163
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQR 134
RQRNRCQYCRYQKCL+ GMKREAVQEERQR
Sbjct: 164 RQRNRCQYCRYQKCLSCGMKREAVQEERQR 193
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 34/230 (14%)
Query: 152 EMPVERILEAEQRVD----------MKQEPADQDIVNEQQATN-ICKATDKQLFQLVDWA 200
+ +ER+L+AEQR + ++ P + + A + +C +KQL+Q+V++A
Sbjct: 261 DFTIERLLDAEQRAEANSGDRALSFLRVGPNSTVQPDYKGAVSALCMVVNKQLYQMVEYA 320
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD--------------------- 239
+ +PHF+ LPL+DQV+LL+A WNELLIA+ + SI D
Sbjct: 321 RLMPHFSKLPLDDQVILLKAAWNELLIANVAWCSIESLDESLTGLGHGDSAFDRRSPVLQ 380
Query: 240 --GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL CL+ IIL+NPD+
Sbjct: 381 PQQLFLNQSFSYHRNSAIKAGVHAIFDRILSELSVKMKRLNLDRRELACLKAIILYNPDI 440
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
RG+K++ VE+ REKVY L+E+ R+ H + GRFA+LLLRLP+LRSI +
Sbjct: 441 RGIKNRSDVELCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 490
>gi|301618913|ref|XP_002938860.1| PREDICTED: estrogen-related receptor gamma-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 173/308 (56%), Gaps = 23/308 (7%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C +C I KR+R CQ CR
Sbjct: 122 KRLCLVCGDTASGYHYGVASCEACKAFFKRTIQGNIEYSCPVVNDCEITKRRRKSCQACR 181
Query: 115 YQKCLNMGMKREAVQEER---QRTKERDSNEVESTS--------------GTLIEMPVER 157
++KCLN+GM +E V+ +R R K R EV++ T+ ++
Sbjct: 182 FRKCLNVGMMKEGVRLDRVRGGRQKYRRPVEVDTADPCSYITSHHSVLGKKTMNKVVSHL 241
Query: 158 ILEAEQRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
IL + +P+ D D+ + T +C+ +++L + WAKH+P F+ L L DQ+
Sbjct: 242 ILVEPGDIFATPDPSVLDNDL---RTLTTLCELINRKLLMTIGWAKHVPGFSALSLADQM 298
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LL++ W E+L+ RS+++ + + +A + R G+ +++ VL +LV K +
Sbjct: 299 ALLQSAWMEILVLGIVFRSVTLSEELAVAENFLLGREQCRSTGLLHLYN-VLLQLVKKYK 357
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+ ++DK E L+ + L N D +++ + V L++ ++ +L++Y R NH E+ R KL
Sbjct: 358 KTRLDKEEYVTLKAMALANSDSTSIENMEAVLSLQDHLHEALQDYERENHGEDNHRSGKL 417
Query: 336 LLRLPSLR 343
L+ LP LR
Sbjct: 418 LMTLPLLR 425
>gi|1089846|emb|CAA55134.1| retinoic acid recptor alpha isoform 2-1 [Gallus gallus]
Length = 453
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K++D + E + ++ VE ++E ++ + PA
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKDVPKTECSESYIVTPEVEELIEKVRKAHQETFPALCQLG 199
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 200 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|260807357|ref|XP_002598475.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
gi|21310107|gb|AAM46149.1|AF378827_1 retinoic acid receptor [Branchiostoma floridae]
gi|229283748|gb|EEN54487.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
Length = 415
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 175/306 (57%), Gaps = 22/306 (7%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV SCEGCKGFF+R+++K++ Y C +NC+I+K RNRCQ+CR +K
Sbjct: 79 CFVCSDKSSGYHYGVASCEGCKGFFRRSIQKNMQYVCHRDKNCVINKVTRNRCQFCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTL-----IEMPVERILEAEQRV--DMKQE 170
C ++GM +E+V+ +R + ++ + +E + + I+ + + EA DM +
Sbjct: 139 CFDVGMSKESVRNDRNKKRKDKTQSLEKHTLSYNWTPEIQTIITTVREAHMATLPDMGKL 198
Query: 171 P-------ADQ----DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
P A+Q DI Q +++C T + ++V +AK +P FTT DQ+ LL+
Sbjct: 199 PKYKVKNAAEQRGPTDIELWQHFSDLCTET---IIKIVQFAKKVPGFTTFGTADQITLLK 255
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
A ++LI + R D + G+ + R+ H AG G + D V T M+++
Sbjct: 256 AACLDILILRLATRLDKESDTVTFINGMMLSRTQMHNAGFGPLTDGVFT-FAEGMQKLLF 314
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
D+TE+G + +I L D +GL+ Q E L+E + +L+ Y+R ++P RF K+++++
Sbjct: 315 DETEIGLMCSICLVCGDRQGLEDIQRAENLQEPLLEALKAYSRRRIPDDPQRFPKMIMKI 374
Query: 340 PSLRSI 345
LRSI
Sbjct: 375 TDLRSI 380
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 168/321 (52%), Gaps = 33/321 (10%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQYCRYQ 116
C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ CR +
Sbjct: 99 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 158
Query: 117 KCLNMGMKR--EAVQEERQRTKERDSNEVESTSGTLIEMP-------------VERILEA 161
KCL GM + EA E + + +G P + ++ A
Sbjct: 159 KCLQAGMNQDGEAGMESSNEPRPEPLVATPTPAGPSPRGPTPMSAARALGHHFMASLITA 218
Query: 162 EQRVDMKQEPADQDI---VNEQQAT-------------NICKATDKQLFQLVDWAKHIPH 205
E ++ E AD++I N+ + +I + + + LF V WAK++P
Sbjct: 219 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV 278
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFD 264
F++LP DQV+LL W+EL + S+ + LLAP A + +
Sbjct: 279 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASTAGGAQGRLTLASMET 338
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
RVL E +S+ R + +D TE C++ ++LF P+ RGLK + VE L+++ L ++++ +
Sbjct: 339 RVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH 398
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
H +P RF KLLL LPSLR I
Sbjct: 399 HPSQPVRFGKLLLLLPSLRFI 419
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 145/263 (55%), Gaps = 9/263 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 147 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 206
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 207 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 266
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 267 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 325
Query: 290 IILFNPDVRGLKSQQVVEMLREK 312
I+LF D GL +E L+EK
Sbjct: 326 IVLFTSDACGLSDAAHIESLQEK 348
>gi|432883778|ref|XP_004074348.1| PREDICTED: retinoic acid receptor beta [Oryzias latipes]
Length = 460
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 75 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++S ++E + E I+E ++ + P
Sbjct: 135 CFAVGMSKESVRNDRNK-KKKESPKLELAESYELSAEQETIIEKIRKAHQETFPSLCQLG 193
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 194 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRVPGFTALTIADQITLLKAACL 253
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ M+MD TE
Sbjct: 254 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPMEMDDTE 312
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L + D + L+ V+ L+E + +L+ Y R +P F K L+++ LR
Sbjct: 313 TGLLSAICLISGDRQDLEEPSKVDQLQEPLLEALKIYVRKRRPSKPHMFPKTLMKITDLR 372
Query: 344 SI 345
SI
Sbjct: 373 SI 374
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 177/320 (55%), Gaps = 34/320 (10%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV SCEGCKGFF+R+V+K++ Y C + +NC I+K RNRCQYCR QK
Sbjct: 112 CVVCSDKSSGYHYGVSSCEGCKGFFRRSVQKNMQYTCHKDKNCPINKVTRNRCQYCRLQK 171
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP------VERILEA---------- 161
C GM +EAV+ +R + K+ ++E+ S + E+ ++ ILEA
Sbjct: 172 CYATGMSKEAVRNDRNKKKK---PKLENPSSNIEEVTEDEQSVLQEILEAHRVTFPQIEE 228
Query: 162 ---------EQRVDMKQEPADQDIVNEQQATN-----ICKATDKQLFQLVDWAKHIPHFT 207
+ R D++ + A ++ N+++ + + + + K + ++V++AK +P FT
Sbjct: 229 AVLSPMSCHDTRGDIENDEASKENSNQKKEKSMLWDKVTELSSKGIIKIVEFAKKMPGFT 288
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
+L DQ+ LL+A E++I R KD +L G+++ R + G G + D +
Sbjct: 289 SLSTSDQITLLKAACLEIMILRLCSRYDLDKDVMLFNGGLSLDREQLQKGGFGTLTDTIF 348
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
S ++ + +D+ E L I L + D GL+ + VE ++E + +L+ Y R +
Sbjct: 349 -RFASSLKVLNIDEMEYAVLSAICLISGDRSGLEESERVEQMQEPILEALKHYVRTRRKD 407
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+P FAK+L +L LRSI V
Sbjct: 408 QPNVFAKILYKLTDLRSISV 427
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 168/321 (52%), Gaps = 47/321 (14%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQYCRYQ 116
C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ CR +
Sbjct: 47 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 106
Query: 117 KCLNMGMKREAVQEERQ-RTKER---DSNE--VESTSGTLIEMP---------------- 154
KCL GM ++AVQ ERQ R+ + DS E ES +L+ P
Sbjct: 107 KCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAA 166
Query: 155 -------VERILEAEQRVDMKQEPADQDI---VNEQQAT-------------NICKATDK 191
+ ++ AE ++ E AD++I N+ + +I + + +
Sbjct: 167 RALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSAR 226
Query: 192 QLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR 251
LF V WAK++P F++LP DQV+LL W+EL + S+ + LLAP
Sbjct: 227 LLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAA 286
Query: 252 SSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
A + + RVL E +S+ R + +D TE C++ ++LF P+ RGLK + VE L+
Sbjct: 287 GGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 346
Query: 311 EKVYTSLEEYTRVNHSEEPGR 331
++ L ++++ +H +P R
Sbjct: 347 DQSQVMLSQHSKAHHPSQPVR 367
>gi|914856|emb|CAA61755.1| estrogen receptor related receptor cDNA-2 [Mus musculus]
gi|1703648|gb|AAB37687.1| mERR-2 [Mus sp.]
Length = 433
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 166/302 (54%), Gaps = 14/302 (4%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y C C I KR+R CQ CR
Sbjct: 100 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQACR 159
Query: 115 YQKCLNMGMKREAVQEERQR-TKERDSNEVESTSGTLIEMP------------VERILEA 161
+ KCL +GM +E V+ +R R +++ ++S + + +P V +L
Sbjct: 160 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENSPYLNLPISPPAKKPLTKIVSNLLGV 219
Query: 162 EQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
EQ P D + + T +C+ D++L L++WAKHIP F +L L DQ+ LL++
Sbjct: 220 EQDKLYAMPPNDIPEGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSA 279
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
W E+LI +RS+ D + A + + G+ ++ R + +LV + +++K++K
Sbjct: 280 WMEILILGIVYRSLPYDDKLAYAEDYIMDEEHSRLVGLLDLY-RAILQLVRRYKKLKVEK 338
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
E L+ + L N D +++ + V+ L++ ++ +L++Y EEP R KLL LP
Sbjct: 339 EEFMILKALALANSDSMYIENLEAVQKLQDLLHEALQDYELSQRHEEPRRAGKLLWTLPL 398
Query: 342 LR 343
LR
Sbjct: 399 LR 400
>gi|443715958|gb|ELU07684.1| hypothetical protein CAPTEDRAFT_168520 [Capitella teleta]
Length = 356
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 26/310 (8%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV SCEGCKGFF+R+V+K++ Y C + + C+I+K RNRCQYCR QK
Sbjct: 19 CVVCQDKSSGYHYGVSSCEGCKGFFRRSVQKNMVYTCHKEKICVINKTTRNRCQYCRLQK 78
Query: 118 CLNMGMKREAVQEER---QRTKER--------DSNEVESTSGTLIE---------MPVER 157
CL GM +EAV+ +R ++TKE + E+ S LIE P+
Sbjct: 79 CLATGMSKEAVRNDRNKKRKTKEEGCSSSTQPQAEELTSEESDLIECITATHEYTFPL-- 136
Query: 158 ILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
ILE E+ ++ A + ++ ++ + + + + ++VD+ K +P F TL DQ+ L
Sbjct: 137 ILEDEKIKLSAEDIAREKVILWERVSEL---STSGIVRIVDFGKRVPGFQTLSSSDQITL 193
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREM 277
L++ E+L+ R + I G+T+ R E G G + D +L +++M
Sbjct: 194 LKSACLEILVLRLGSRYHEDDETITFTNGLTLTRQQLEEGGFGTLTDTIL-RFAKSLQQM 252
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337
++D TE L I L + D GL+ + VE L+E + +L+ Y R S P FAK+L+
Sbjct: 253 QVDTTEYALLSAICLLSGDRSGLEDPEKVEALQEPILEALKHYIRRRRSSLPHSFAKILM 312
Query: 338 RLPSLRSIEV 347
+L LRSI V
Sbjct: 313 KLTDLRSISV 322
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 168/326 (51%), Gaps = 44/326 (13%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+ L+Y C+E +CI+D +RN+CQ CR++
Sbjct: 8 LCKVCGDKASGKHYGVISCDGCRGFFKRSIRRGLAYHCKESNSCIVDVTRRNQCQACRFK 67
Query: 117 KCLNMGMKREAVQEERQ-RTK-------------------------ERDSNEVESTSGTL 150
KCL++ MKR+AVQ ER RT S +TSG
Sbjct: 68 KCLSVNMKRDAVQHERSPRTSFPIHCTGLSSTGRRNNNNNNSNTYSYSGSFLTAATSGPF 127
Query: 151 IEMPVERILEAEQRVDM-------KQEPADQDIVNEQ-QATNICKATDKQLFQLVDWAKH 202
+++P + + + KQ D I ++Q N+ ++ K LF V WA+
Sbjct: 128 LDLPTYHFVYPQPSFPIHFDSLVSKQNVWDLTISSQQGHPENVYESAAKLLFLTVKWARS 187
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGI 262
IP F L DQ +LL WNEL I S + ++ V + L V +S
Sbjct: 188 IPSFLQLTFHDQSILLENTWNELFILSAAQWTLPVDEEYL------VRVTSLPNNKAKEK 241
Query: 263 FDRV---LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
F+R ++++K + +D TE CL+ + LF + LK + VEML+++ + L +
Sbjct: 242 FEREVKNFKKIITKFNNLNVDYTEYACLKALTLFKAETSELKDRLQVEMLQDQTHIMLHD 301
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y S + RF KLL+ LPS+ +
Sbjct: 302 YCTSQDSHK-ARFGKLLMLLPSVNGL 326
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 152/284 (53%), Gaps = 19/284 (6%)
Query: 64 RASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGM 123
++SGKHYG ++CEGCK FFKR+VR++L+Y CR R C ID+ RN+CQYCR +KCL MGM
Sbjct: 1 KSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRTCPIDQHHRNQCQYCRLKKCLKMGM 60
Query: 124 KREAVQEERQRTKERD-------SNEVESTSGTLIEMPVERILEAE----QRVDMKQEPA 172
+REAVQ R + +N T + + +L AE R +P
Sbjct: 61 RREAVQRGRVPPTQHPGFPGQMLANGDPLNGHTYLSSFISMLLRAEPYPTSRYGQCMQPN 120
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
N NIC+ + LF V+W+++IP F L + DQV LLR W+EL + + +
Sbjct: 121 -----NIMGIENICELAARLLFSAVEWSRNIPFFPDLQVTDQVALLRLSWSELFVLNAAQ 175
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTI 290
S+ + LLA ++ S V D R+ E V K++ + +D E CL+ +
Sbjct: 176 CSMPLHVAPLLA-AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAV 234
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+LF+ D GL +E L+EK +LEEY R + +P RF K
Sbjct: 235 VLFSSDACGLSDTAHIESLQEKSQCALEEYVRSQYPNQPTRFGK 278
>gi|218156248|dbj|BAH03356.1| retinoic acid receptor alpha [Scyliorhinus torazame]
Length = 364
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 169/297 (56%), Gaps = 16/297 (5%)
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QKCL +G
Sbjct: 2 DKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCLEVG 61
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA-------DQD 175
M +E+V+ +R + K++D+ + E + I E ++E ++ + PA +
Sbjct: 62 MSKESVRNDRNK-KKKDTPKQECSESYTITPETEDLIEKVRKAHQETFPALCQLGKYTTN 120
Query: 176 IVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
EQ+ T + + K + + V++AKH+P FTTL + DQ+ LL+A ++LI
Sbjct: 121 NSAEQRVTLDIDLWDKFSELSTKCIIKTVEFAKHLPGFTTLTIADQITLLKAACLDILIL 180
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
R +D + + G+T+ R+ H AG G + D V +++ ++MD E G L
Sbjct: 181 RICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLS 239
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I L D + L+ + V+ L+E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 240 AICLICGDRQDLEEPEKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSI 296
>gi|251823758|ref|NP_001156564.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
gi|146395244|gb|ABQ24189.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
Length = 439
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 184/354 (51%), Gaps = 38/354 (10%)
Query: 15 GGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGS--KHLCSICGDRASGKHYGV 72
G A +++S G +N G I GS K LC +CGD ASG HYGV
Sbjct: 66 GHATALASNGGSNRRCGEEEGQVKCEFI---------LGSVAKRLCLVCGDVASGYHYGV 116
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE- 131
SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR+ KCL +GM RE V+ +
Sbjct: 117 ASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRFVKCLAVGMLREGVRLDR 176
Query: 132 ----RQRTKERDSNE---------------VESTSGTLIEMPVERILEAE-QRVDMKQEP 171
RQ+ K R E S G + V +L AE + + +P
Sbjct: 177 VRGGRQKYKRRIDAENSLYLHSQNPLPQKKTFSAGGVVENKVVSLLLVAEPEAIFAMPDP 236
Query: 172 --ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
A+ DI + T +C D++L + WAKHIP F +L L DQ+ LL++GW E+LI
Sbjct: 237 MVAESDI---KALTTLCDLADRELVVNIGWAKHIPGFASLSLADQMSLLQSGWMEILILR 293
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
RS++ +D ++ A + + AG+ + + +L +LV K + + ++K E L+
Sbjct: 294 VVFRSLAFEDKLVYADDYIMDEEQSKLAGLLDLNNAIL-QLVKKYKSIGLEKEEFVVLKA 352
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
I L N D ++ + V+ L+++++ +L++Y +H E+P R K+++ LP LR
Sbjct: 353 IALANSDSMQIEDTEAVQRLQDELHGALQDYEFTHHPEDPRRTGKVIMTLPLLR 406
>gi|146186458|gb|ABQ09281.1| retinoid X receptor alpha 2 [Oryzias latipes]
Length = 118
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 100/116 (86%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ + C+IDKRQRNRCQYCR
Sbjct: 1 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCR 60
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE 170
YQKCL MGMKREAVQEERQR KER NEVEST EMPV++IL+AE V+ K E
Sbjct: 61 YQKCLAMGMKREAVQEERQRGKERGENEVESTCSFNEEMPVDKILDAELAVEPKTE 116
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 148/291 (50%), Gaps = 23/291 (7%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG +SCEGCK FFKR++R+ LSY CR +NC +D RN+CQYCR +K
Sbjct: 77 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRGSKNCPVDINHRNQCQYCRLKK 136
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVEST-------------SGTLIEMPVERILEAEQR 164
C MGM++EAVQ R R + ST S T V ++ AE
Sbjct: 137 CEKMGMRKEAVQ--RGRIPPNSQHPYASTLLFGDNLLSMTQPSSTHFSNVVAHLVRAEPY 194
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
P NI + K LF V+WAK+IP F L DQ+ LLRA W E
Sbjct: 195 ------PPTNCSSTIMGIENIYELGAKLLFSAVEWAKNIPFFGELIESDQLTLLRASWAE 248
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKT 282
L + + + + V LLA V S + D RV V +++ + MD
Sbjct: 249 LFVVNAAQFGMPVHAAPLLAASVLHSTSPLPPDRLVLFMDRIRVFQGQVERLKSLHMDSA 308
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
E L+ +ILF+ D GL VE ++EKV ++LEEY R ++ GRF
Sbjct: 309 EFSSLKAVILFSADCCGLSDVMRVESIQEKVQSALEEYCRTQRQQQIGRFG 359
>gi|4160009|gb|AAD05222.1| retinoic acid receptor alpha [Homo sapiens]
Length = 462
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + VD+AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVDFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|156387534|ref|XP_001634258.1| predicted protein [Nematostella vectensis]
gi|156221339|gb|EDO42195.1| predicted protein [Nematostella vectensis]
Length = 344
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 25/309 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
S+ +C+ICGDR+SG HYGV SCEGCK FFKRTV+K L YAC E ++C IDK R RCQYC
Sbjct: 10 SQRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQYC 69
Query: 114 RYQKCLNMGMKREAVQEERQ-----RTKE----RDSNEVESTSGTLIEMPVERILEAEQR 164
R+QKCL +GM +EAV+E+R R K +++ E +S +I++ R +R
Sbjct: 70 RFQKCLALGMLKEAVREDRAPGGRPRIKSLIGLKENAETFVSSELIIQLIQARPDAIPKR 129
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
E D+ I + T +++ +++WAK +P F + EDQ+ LL G E
Sbjct: 130 RPDYLELGLNDMCPLNPVEAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLE 189
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE-------LVSKMREM 277
+LI RS + +++A + +F+ VL + K++ +
Sbjct: 190 VLILRICQRSTPHQGAVMVAKDTLL--------SPDNVFNIVLEQWAGQLSCFAYKLQSL 241
Query: 278 KMDKTELGCLRTIILFNPDVR-GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
++D E C+ I+LF + GL+++ +V+ + + +L +Y + ++ E+P RFA +L
Sbjct: 242 QLDMAEFACVNAIMLFEQETSGGLRNRDLVDFVLNRTLDALRDYIKSSYPEKPSRFAHIL 301
Query: 337 LRLPSLRSI 345
L+LP+LR +
Sbjct: 302 LKLPTLRDM 310
>gi|224045380|ref|XP_002197385.1| PREDICTED: retinoic acid receptor beta isoform 1 [Taeniopygia
guttata]
Length = 448
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + EST + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQ-ESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|224045384|ref|XP_002197406.1| PREDICTED: retinoic acid receptor beta isoform 3 [Taeniopygia
guttata]
Length = 434
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 67 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 126
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + EST + ++ + E ++ + P
Sbjct: 127 CFEVGMSKESVRNDRNKKKKEPSKQ-ESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 185
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 186 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 245
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 246 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 304
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 305 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 364
Query: 344 SI 345
SI
Sbjct: 365 SI 366
>gi|45384512|ref|NP_990657.1| retinoic acid receptor beta [Gallus gallus]
gi|3041719|sp|P22448.2|RARB_CHICK RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|871040|emb|CAA40617.1| retinoic acid receptor beta,isoform 1 [Gallus gallus]
Length = 455
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|63786|emb|CAA39997.1| retinoic acid binding protein beta isoform [Gallus gallus]
Length = 455
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|17367843|sp|Q9W6B3.1|RARB_COTJA RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|4566559|gb|AAD23397.1|AF110729_1 retinoic acid receptor beta-1 [Coturnix coturnix]
Length = 455
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|3213188|gb|AAC23439.1| retinoic acid receptor alpha 2 isoform [Rattus norvegicus]
Length = 459
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKETPKPECSESYTLTP-EVGELIEKVRKANQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R +P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSQPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|348506580|ref|XP_003440836.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 440
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 27/313 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ C
Sbjct: 99 AKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQAC 158
Query: 114 RYQKCLNMGMKREAVQEE-----RQRTKERDSNE---------------VESTSGTLIEM 153
R+ KCL +GM RE V+ + RQ+ K R E S G +
Sbjct: 159 RFVKCLAVGMLREGVRLDRVRGGRQKYKRRIDAENSPYLHPQNALPQKKTFSVGGVVENK 218
Query: 154 PVERILEAE-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLP 210
V +L AE + + +P + DI + T +C D++L + WAKHIP F +L
Sbjct: 219 VVSLLLVAEPEGIFAMPDPTVPESDI---KALTTLCDLADRELVVNIGWAKHIPGFPSLS 275
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
L DQ+ LL++GW E+LI RS++++D ++ A + + AG+ + + +L +L
Sbjct: 276 LADQMSLLQSGWMEILILRVVFRSLALEDKLVYAEDYIMDEEQSKLAGLLDLNNAIL-QL 334
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V K + M ++K E L+ I L N D ++ + V+ L++ ++ +L++Y ++H E+P
Sbjct: 335 VKKYKAMGLEKEEFVVLKAIALANSDSMHIEDSEAVQRLQDVLHGALQDYETIHHPEDPR 394
Query: 331 RFAKLLLRLPSLR 343
R K+++ LP LR
Sbjct: 395 RAGKMIMTLPLLR 407
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 20/320 (6%)
Query: 18 NSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEG 77
N + G ++ ++ S + P + G + C +CGD++SGKHYGV++CEG
Sbjct: 16 NGVDKAGGYPRAAEDDSASPPGAASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEG 75
Query: 78 CKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKE 137
CK FFKR++R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EA+
Sbjct: 76 CKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEALFAPGFCLPS 135
Query: 138 RDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLV 197
+ E+P L R + ++P + IC V
Sbjct: 136 SPVFALHRVDLEFTEVPPNPSL----RCSLCRDP------DRPSGVTICT---------V 176
Query: 198 DWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257
+WA+H P F LP+ DQV LLR W+EL + + + ++ + LLA A E
Sbjct: 177 EWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAER 236
Query: 258 GVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK +
Sbjct: 237 AVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVA 296
Query: 317 LEEYTRVNHSEEPGRFAKLL 336
L EY R + +P RF +LL
Sbjct: 297 LTEYVRAQYPSQPQRFGRLL 316
>gi|234371|gb|AAB19628.1| retinoic acid receptor-beta [Gallus gallus]
Length = 425
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 58 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 117
Query: 118 CLNMGMKREAVQEERQRTK----ERDSNEVESTSGTLIEMPVERILEAEQRV-------- 165
C +GM +E+V+ +R + K ++DS E + L ++ E+I +A Q
Sbjct: 118 CFEVGMSKESVRNDRNKKKKEPTKQDSTENYEMTAELDDL-TEKIRKAHQETFPSLCQLG 176
Query: 166 -DMKQEPADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 177 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 236
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 237 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 295
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 296 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 355
Query: 344 SI 345
SI
Sbjct: 356 SI 357
>gi|348535610|ref|XP_003455292.1| PREDICTED: retinoic acid receptor beta-like [Oreochromis niloticus]
Length = 463
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++S + + + +E I+E +R + P
Sbjct: 141 CFAVGMSKESVRNDRNK-KKKESPKPDLAESYELTTELETIIEKIRRAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRVPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPIEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L + D + L+ V+ L+E + +L+ Y R +P F K L+++ LR
Sbjct: 319 TGLLSAICLISGDRQDLEEPSKVDQLQEPLLEALKIYVRKRRPSKPHMFPKTLMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|62979|emb|CAA40615.1| retinoic acid receptor beta,isoform 4 [Gallus gallus]
Length = 434
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 67 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 126
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 127 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 185
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 186 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 245
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 246 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 304
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 305 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 364
Query: 344 SI 345
SI
Sbjct: 365 SI 366
>gi|148684228|gb|EDL16175.1| retinoic acid receptor, alpha [Mus musculus]
Length = 462
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C ++GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFDVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|218156202|dbj|BAH03333.1| retinoic acid receptor 1 [Lethenteron camtschaticum]
Length = 497
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 26/311 (8%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV SCEGCKGFF+R+V+K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 90 CFVCQDKSSGYHYGVSSCEGCKGFFRRSVQKNMVYTCHRDKNCVINKNTRNRCQYCRLQK 149
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERI---LEAEQRVDMKQEPADQ 174
C +GM +EAV+ + R K+R V + E+P ER E EQ VD ++ +
Sbjct: 150 CFEVGMSKEAVRND--RNKKRKEAPVVVAAVRSPEVPPERYELSCEQEQLVDKIRKSHQE 207
Query: 175 DIVNEQQ----ATNIC----------------KATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
+ Q TN C + + K + ++V++AK +P F +L + DQ
Sbjct: 208 TFPSLCQLGKYTTNSCADHRVQLDLGLWDKFSELSTKCIVKIVEFAKRLPGFPSLTIADQ 267
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+ LL+A E+LI R +D + + G+T+ R+ H AG G + D V +++
Sbjct: 268 ITLLKAACLEILILRICSRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDYVFA-FAAQL 326
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
++MD E G L I L D + L+ VE L+E + +L+ Y R +P F K
Sbjct: 327 LPLEMDDAEAGLLSAICLICGDRQDLEDPHKVERLQEPLVETLKLYVRRRRPTKPHMFPK 386
Query: 335 LLLRLPSLRSI 345
+L+++ LR I
Sbjct: 387 MLMKITDLRGI 397
>gi|63754|emb|CAA42077.1| retinoic acid receptor-beta [Gallus gallus]
Length = 448
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVTACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|348562379|ref|XP_003466988.1| PREDICTED: retinoic acid receptor alpha-like isoform 2 [Cavia
porcellus]
Length = 462
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPESSESCTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ + V++L+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPERVDLLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|156380981|ref|XP_001632045.1| predicted protein [Nematostella vectensis]
gi|156219095|gb|EDO39982.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 167/326 (51%), Gaps = 38/326 (11%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LC +C D+A+G HYGV++CEGCKGFFKRTV+K L Y CR ++C I++ RNRCQYCR++
Sbjct: 3 LCVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFE 62
Query: 117 KCLNMGMKREAVQEER-----------------------QRTKERDSNEVESTSGT-LIE 152
KC+ GM ++AV+++R + KE N + S G E
Sbjct: 63 KCVKSGMLKQAVRDDRTPGGRHRHASLQDHRQKKQKLQGKAPKELPQNGLSSPEGPDTPE 122
Query: 153 MPVERILEAEQRVDMKQEPADQDIVNEQ-------------QATNICKATDKQLFQLVDW 199
V + E E + ++Q D D++ + + + ++L+Q++ W
Sbjct: 123 GVVSKEDENEFLIYIQQLRHDVDVIPDSPVKPPEGSPAAGFSVDKLMQYGYQELYQVIQW 182
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK-DGILLAPGVTVYRSSAHEAG 258
K++P F L LEDQ+ LL+ + +L + ++RSI D ++ A G+ + + E G
Sbjct: 183 GKNVPGFRELKLEDQITLLKTSFMDLNVFRLAYRSICCDPDSLMFAKGIILNKPQCLEMG 242
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
E +K+R + MD E CL ++L +PD G+ + V L+ V + L
Sbjct: 243 WSMDLTETTLEFCAKLRNLNMDVNEFSCLSGLVLLSPDAPGVVDKDKVTELQTNVTSCLR 302
Query: 319 EYTRVNHSEEPGRFAKLLLRLPSLRS 344
+Y + + R KLLL LPSLR+
Sbjct: 303 DYEMYRYPSKSNRLGKLLLCLPSLRA 328
>gi|326921997|ref|XP_003207239.1| PREDICTED: retinoic acid receptor beta-like [Meleagris gallopavo]
gi|4566561|gb|AAD23398.1|AF110730_1 retinoic acid receptor beta-2 [Coturnix coturnix]
gi|62977|emb|CAA40616.1| retinoic acid receptor beta [Gallus gallus]
gi|227549|prf||1706356A retinoic acid receptor
Length = 448
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+++ + EST + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKEPTKQESTENYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPMKVDKLQEPLLEALKIYIRKRRPNKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|53891|emb|CAA40749.1| retinoic acid receptor-alpha [Mus musculus]
gi|71059791|emb|CAJ18439.1| Rara [Mus musculus]
Length = 391
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C ++GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFDVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|116734873|ref|NP_033050.2| retinoic acid receptor alpha isoform 1 [Mus musculus]
gi|293336010|ref|NP_001170773.1| retinoic acid receptor alpha isoform 1 [Mus musculus]
gi|293336061|ref|NP_001170774.1| retinoic acid receptor alpha isoform 1 [Mus musculus]
gi|133484|sp|P11416.1|RARA_MOUSE RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|298622|gb|AAB25783.1| retinoic acid nuclear receptor isoform alpha 1 [Mus sp.]
gi|22800363|gb|AAH10216.1| Retinoic acid receptor, alpha [Mus musculus]
gi|74185669|dbj|BAE32722.1| unnamed protein product [Mus musculus]
gi|74193249|dbj|BAE20623.1| unnamed protein product [Mus musculus]
gi|226402|prf||1510302A retinoic acid receptor alpha
Length = 462
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C ++GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFDVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|60460883|ref|NP_001012663.1| retinoic acid receptor alpha [Canis lupus familiaris]
gi|62900897|sp|Q5FBR4.1|RARA_CANFA RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|59956940|dbj|BAD89859.1| retinoic acid receptor alpha [Canis lupus familiaris]
Length = 462
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H+AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSEGLTLNRTQMHKAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|293335963|ref|NP_001169999.1| retinoic acid receptor alpha isoform 2 [Mus musculus]
Length = 459
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C ++GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFDVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|311267360|ref|XP_003131522.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Sus scrofa]
gi|335297712|ref|XP_003358102.1| PREDICTED: retinoic acid receptor alpha [Sus scrofa]
Length = 462
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|4506419|ref|NP_000955.1| retinoic acid receptor alpha isoform 1 [Homo sapiens]
gi|223718064|ref|NP_001138773.1| retinoic acid receptor alpha isoform 1 [Homo sapiens]
gi|133483|sp|P10276.2|RARA_HUMAN RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|36157|emb|CAA29829.1| unnamed protein product [Homo sapiens]
gi|14250550|gb|AAH08727.1| Retinoic acid receptor, alpha [Homo sapiens]
gi|48146993|emb|CAG33719.1| RARA [Homo sapiens]
gi|60656027|gb|AAX32577.1| retinoic acid receptor alpha [synthetic construct]
gi|119581058|gb|EAW60654.1| retinoic acid receptor, alpha, isoform CRA_c [Homo sapiens]
gi|119581060|gb|EAW60656.1| retinoic acid receptor, alpha, isoform CRA_c [Homo sapiens]
gi|119581062|gb|EAW60658.1| retinoic acid receptor, alpha, isoform CRA_c [Homo sapiens]
gi|123993711|gb|ABM84457.1| retinoic acid receptor, alpha [synthetic construct]
gi|189069121|dbj|BAG35459.1| unnamed protein product [Homo sapiens]
gi|307685207|dbj|BAJ20534.1| retinoic acid receptor, alpha [synthetic construct]
gi|325495463|gb|ADZ17337.1| retinoic acid nuclear receptor alpha variant 1 [Homo sapiens]
gi|384939564|gb|AFI33387.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
gi|384939568|gb|AFI33389.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
gi|387540262|gb|AFJ70758.1| retinoic acid receptor alpha isoform 1 [Macaca mulatta]
gi|225855|prf||1401242A retinoic acid receptor
Length = 462
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|355715376|gb|AES05307.1| retinoic acid receptor, alpha [Mustela putorius furo]
Length = 462
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|348562377|ref|XP_003466987.1| PREDICTED: retinoic acid receptor alpha-like isoform 1 [Cavia
porcellus]
Length = 459
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEVPKPESSESCTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ + V++L+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPERVDLLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|444714018|gb|ELW54906.1| Retinoic acid receptor alpha [Tupaia chinensis]
Length = 462
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|354496835|ref|XP_003510530.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Cricetulus
griseus]
gi|354496837|ref|XP_003510531.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Cricetulus
griseus]
Length = 463
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|410981031|ref|XP_003996876.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Felis catus]
gi|410981033|ref|XP_003996877.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Felis catus]
Length = 462
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|60652953|gb|AAX29171.1| retinoic acid receptor alpha [synthetic construct]
Length = 463
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|149054146|gb|EDM05963.1| retinoic acid receptor, alpha, isoform CRA_a [Rattus norvegicus]
Length = 462
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKETPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|350591001|ref|XP_003483182.1| PREDICTED: retinoic acid receptor beta [Sus scrofa]
Length = 455
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T S++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FASQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRRRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|123994137|gb|ABM84670.1| retinoic acid receptor, alpha [synthetic construct]
Length = 462
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|1743345|emb|CAA71177.1| retinoic acid receptor-alpha [Mus spretus]
Length = 462
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|189442267|gb|AAI67563.1| Rara2a protein [Xenopus laevis]
Length = 457
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 86 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+++ +V+ ++ + ++E ++ + PA
Sbjct: 146 CFEVGMSKESVRNDRNK-KKKEPPKVDVMESYVLSPETQDLIEKVRKAHKETFPALCQLG 204
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +E++ + + + K + + V++AK +P FTTL + DQ+ LL++
Sbjct: 205 KYTTNFSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACL 264
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 265 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 323
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R ++P F K+L+++ LR
Sbjct: 324 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRNRRPKKPHMFPKMLMKITDLR 383
Query: 344 SI 345
SI
Sbjct: 384 SI 385
>gi|301779125|ref|XP_002924980.1| PREDICTED: retinoic acid receptor alpha-like [Ailuropoda
melanoleuca]
Length = 461
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|291405990|ref|XP_002719401.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Oryctolagus
cuniculus]
Length = 462
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|284813546|ref|NP_001014942.2| retinoic acid receptor alpha [Bos taurus]
gi|296476396|tpg|DAA18511.1| TPA: retinoic acid receptor, alpha [Bos taurus]
gi|440904258|gb|ELR54797.1| Retinoic acid receptor alpha [Bos grunniens mutus]
Length = 462
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|403289928|ref|XP_003936090.1| PREDICTED: retinoic acid receptor beta [Saimiri boliviensis
boliviensis]
Length = 448
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|200656|gb|AAA40031.1| retinoic acid receptor-alpha' [Mus musculus]
Length = 391
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 169/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C ++GM +E+V+ +R++ K+ S S +L V ++E ++ + PA
Sbjct: 148 CFDVGMSKESVRNDRKKKKKEAPKPECSESYSLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTLTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|351715045|gb|EHB17964.1| Estrogen-related receptor gamma, partial [Heterocephalus glaber]
Length = 435
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 171/304 (56%), Gaps = 19/304 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD SG HYGV SCE CK FFKRT++ + Y+C C I KR CQ CR
Sbjct: 103 KRLCLVCGDITSGYHYGVASCEACKAFFKRTIQGNTEYSCPAANECEITKRSPKSCQACR 162
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKER-DSNEVESTSGTLIE---MPVERI---LEAE 162
+ K L +GM +E V+ + RQ+ K R D+ + L++ P +I L AE
Sbjct: 163 FMKSLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNAQLVQPAKKPYNKIVSHLVAE 222
Query: 163 -QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219
+++ +P D DI + T +C D++L +++WAKHIP F+TL L DQ+ LL+
Sbjct: 223 PEKIYAMPDPTVPDSDI---KALTTLCGLADRELVVIIEWAKHIPGFSTLSLADQMSLLQ 279
Query: 220 AGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKM 279
+ W E+LI +RS+S +D ++ + + + AG+ + + +L +LV K + MK+
Sbjct: 280 SAWMEILILGVVYRSLSFEDELVYPDDYIMDKDQSKLAGLLDLNNAIL-QLVKKYKSMKL 338
Query: 280 DKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339
+K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ L
Sbjct: 339 EKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHKALQDYEAGQHMEDPRRAGKMLMTL 398
Query: 340 PSLR 343
P L+
Sbjct: 399 PLLQ 402
>gi|354496839|ref|XP_003510532.1| PREDICTED: retinoic acid receptor alpha isoform 3 [Cricetulus
griseus]
Length = 460
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|431890665|gb|ELK01544.1| Retinoic acid receptor alpha [Pteropus alecto]
Length = 462
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKETPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|410916275|ref|XP_003971612.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 438
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 167/313 (53%), Gaps = 27/313 (8%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ C
Sbjct: 97 AKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQAC 156
Query: 114 RYQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMK 168
R+ KCL +GM RE V+ + RQ+ K R E +P ++IL ++ K
Sbjct: 157 RFVKCLAVGMLREGVRLDRVRGGRQKYKRRIDAENSPYLHPQNALPQKKILTVSHVLENK 216
Query: 169 -------QEP-----------ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLP 210
EP + DI + T +C D++L + WAKHIP F +L
Sbjct: 217 VVSVLLVAEPEGIFAMPDPTVPESDI---KALTTLCDLADRELVVNIGWAKHIPGFPSLS 273
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
L DQ+ LL++ W E+LI RS+ ++D ++ A + + AG+ + + +L +L
Sbjct: 274 LADQMSLLQSAWMEILILRVVFRSLGLEDKLVYAEDYVMDEEQSRLAGLLDLNNTIL-QL 332
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
V K + M ++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P
Sbjct: 333 VKKFKVMGLEKEEFVLLKAIALANSDSMQIEDTEAVQRLQDVLHGALQDYETARHPEDPR 392
Query: 331 RFAKLLLRLPSLR 343
R KL++ LP LR
Sbjct: 393 RAGKLIMTLPLLR 405
>gi|158262026|ref|NP_113716.2| retinoic acid receptor alpha [Rattus norvegicus]
gi|71122456|gb|AAH99830.1| Retinoic acid receptor, alpha [Rattus norvegicus]
gi|149054147|gb|EDM05964.1| retinoic acid receptor, alpha, isoform CRA_b [Rattus norvegicus]
Length = 459
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKETPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|324516278|gb|ADY46480.1| Nuclear hormone receptor family member nhr-64 [Ascaris suum]
Length = 257
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDRA+GKHYG SC+GCKGFF+RTVRK +Y CR +C++DK RN C+ CR+ +
Sbjct: 15 CAICGDRATGKHYGAISCDGCKGFFRRTVRKRHAYVCRFEHSCVVDKDHRNTCRRCRFDQ 74
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
CL GMKREAVQ ER S++ ST T E + +L+AEQ + +
Sbjct: 75 CLRSGMKREAVQNERDTIV---SHQASSTDSTYSEAYIATLLKAEQATHLLRASVITRTA 131
Query: 178 NEQQATNICKATD---KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234
+ ++ C TD +QL +V+WAK++ F LP+ QV LLR + L+ RS
Sbjct: 132 DARRTATTCDVTDSMHQQLVLMVEWAKNLTQFLELPMNAQVALLRNFSAQHLVICAGFRS 191
Query: 235 ISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN 294
+SV+D I L ++R + V + R+L L MR + MD++E ++ + LF+
Sbjct: 192 MSVQDAIWLTNDSCLHRDTPAIPDVNRVAARILDHLTQPMRCLHMDESEYVSMKAVALFD 251
Query: 295 PDVR 298
P R
Sbjct: 252 PHER 255
>gi|296202776|ref|XP_002748605.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Callithrix
jacchus]
gi|390463657|ref|XP_003733076.1| PREDICTED: retinoic acid receptor alpha [Callithrix jacchus]
Length = 462
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTL-SPEVGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|35883|emb|CAA30262.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T ++++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLQPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|158257842|dbj|BAF84894.1| unnamed protein product [Homo sapiens]
Length = 462
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYLRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|21464744|gb|AAM54497.1|AF411257_1 ultraspiracle protein [Trichoplusia ni]
Length = 151
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 86/91 (94%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE R+CIIDK
Sbjct: 47 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCIIDK 106
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135
RQRNRCQYCRYQKCL GMKREAVQEERQR
Sbjct: 107 RQRNRCQYCRYQKCLACGMKREAVQEERQRA 137
>gi|403304574|ref|XP_003942870.1| PREDICTED: retinoic acid receptor alpha [Saimiri boliviensis
boliviensis]
Length = 457
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 201
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 202 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 261
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 262 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 321 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 380
Query: 344 SI 345
SI
Sbjct: 381 SI 382
>gi|213623600|gb|AAI69954.1| Retinoic acid receptor alpha [Xenopus laevis]
gi|213625161|gb|AAI69958.1| Retinoic acid receptor alpha [Xenopus laevis]
Length = 448
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 136
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+++ +V+ ++ + ++E ++ + PA
Sbjct: 137 CFEVGMSKESVRNDRNK-KKKEPPKVDVMESYVLSPETQDLIEKVRKAHKETFPALCQLG 195
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +E++ + + + K + + V++AK +P FTTL + DQ+ LL++
Sbjct: 196 KYTTNFSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACL 255
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 256 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 314
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R ++P F K+L+++ LR
Sbjct: 315 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRNRRPKKPHMFPKMLMKITDLR 374
Query: 344 SI 345
SI
Sbjct: 375 SI 376
>gi|8815561|gb|AAB19602.2| retinoic acid receptor alpha [Homo sapiens]
Length = 416
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 42 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 101
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 102 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 160
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 161 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 220
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 221 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 279
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 280 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 339
Query: 344 SI 345
SI
Sbjct: 340 SI 341
>gi|18031833|gb|AAL02360.1| retinoic acid receptor alpha [Mesocricetus auratus]
Length = 430
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 56 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 115
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ + S S TL V ++E ++ + PA
Sbjct: 116 CFEVGMSKESVRNDRNKKKKEAAKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 174
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 175 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 234
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 235 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 293
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 294 TGLLSAICLICGDRQDLEQPDKVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 353
Query: 344 SI 345
SI
Sbjct: 354 SI 355
>gi|426348381|ref|XP_004041815.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 457
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 201
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 202 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 261
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 262 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 321 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 380
Query: 344 SI 345
SI
Sbjct: 381 SI 382
>gi|431919411|gb|ELK17930.1| Retinoic acid receptor beta [Pteropus alecto]
Length = 448
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 169/301 (56%), Gaps = 14/301 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNE--VESTSGTL-IEMPVERILEAEQRV--------- 165
C +GM +E+V+ +R + K+ S + +ES T ++ E+I +A Q
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQECMESYEMTAELDDLTEKIRKAHQETFPSLCQLGK 200
Query: 166 DMKQEPADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A +
Sbjct: 201 YTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLD 260
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 261 ILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTET 319
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LRS
Sbjct: 320 GLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRS 379
Query: 345 I 345
I
Sbjct: 380 I 380
>gi|67459914|ref|NP_001019980.1| retinoic acid receptor alpha isoform 2 [Homo sapiens]
gi|397522866|ref|XP_003831469.1| PREDICTED: retinoic acid receptor alpha [Pan paniscus]
gi|402900100|ref|XP_003913018.1| PREDICTED: retinoic acid receptor alpha [Papio anubis]
gi|47939545|gb|AAH71733.1| Retinoic acid receptor, alpha [Homo sapiens]
gi|119581057|gb|EAW60653.1| retinoic acid receptor, alpha, isoform CRA_b [Homo sapiens]
gi|325495465|gb|ADZ17338.1| retinoic acid nuclear receptor alpha variant 2 [Homo sapiens]
gi|384939566|gb|AFI33388.1| retinoic acid receptor alpha isoform 2 [Macaca mulatta]
gi|387540260|gb|AFJ70757.1| retinoic acid receptor alpha isoform 2 [Macaca mulatta]
Length = 457
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 201
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 202 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 261
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 262 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 321 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 380
Query: 344 SI 345
SI
Sbjct: 381 SI 382
>gi|17380507|sp|P10826.2|RARB_HUMAN RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=HBV-activated protein; AltName: Full=Nuclear
receptor subfamily 1 group B member 2; AltName:
Full=RAR-epsilon
Length = 455
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|311115255|gb|ADP69098.1| BCL6 corepressor/retinoic acid receptor alpha fusion protein [Homo
sapiens]
Length = 1931
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 1557 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 1616
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 1617 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 1675
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 1676 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 1735
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 1736 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 1794
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 1795 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 1854
Query: 344 SI 345
SI
Sbjct: 1855 SI 1856
>gi|297272905|ref|XP_002808174.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor alpha-like
[Macaca mulatta]
Length = 457
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 201
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 202 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 261
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 262 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 321 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 380
Query: 344 SI 345
SI
Sbjct: 381 SI 382
>gi|332258553|ref|XP_003278361.1| PREDICTED: retinoic acid receptor alpha [Nomascus leucogenys]
Length = 480
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|410051357|ref|XP_003315498.2| PREDICTED: retinoic acid receptor alpha isoform 1 [Pan troglodytes]
Length = 480
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 108 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 167
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 168 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 226
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 227 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 286
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 287 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 345
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 346 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 405
Query: 344 SI 345
SI
Sbjct: 406 SI 407
>gi|410051359|ref|XP_003953076.1| PREDICTED: retinoic acid receptor alpha [Pan troglodytes]
Length = 482
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 108 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 167
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 168 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 226
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 227 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 286
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 287 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 345
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 346 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 405
Query: 344 SI 345
SI
Sbjct: 406 SI 407
>gi|311267362|ref|XP_003131521.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Sus scrofa]
Length = 459
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|426237931|ref|XP_004012911.1| PREDICTED: retinoic acid receptor alpha-A-like [Ovis aries]
Length = 450
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|311268593|ref|XP_001926863.2| PREDICTED: retinoic acid receptor beta isoform 1 [Sus scrofa]
Length = 448
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T S++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FASQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRRRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|395826476|ref|XP_003786444.1| PREDICTED: retinoic acid receptor alpha [Otolemur garnettii]
Length = 459
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPNRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|291405988|ref|XP_002719400.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Oryctolagus
cuniculus]
Length = 459
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|7638251|gb|AAF65452.1| ECFP-retinoic acid receptor alpha fusion protein [synthetic
construct]
Length = 694
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 320 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 379
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 380 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 438
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 439 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 498
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 499 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 557
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 558 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 617
Query: 344 SI 345
SI
Sbjct: 618 SI 619
>gi|1314310|gb|AAB00113.1| nucleophosmin-retinoic acid receptor alpha fusion protein NPM-RAR
short form [Homo sapiens]
Length = 520
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 146 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 205
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 206 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 264
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 265 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 324
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 325 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 383
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 384 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 443
Query: 344 SI 345
SI
Sbjct: 444 SI 445
>gi|35874|emb|CAA29787.1| unnamed protein product [Homo sapiens]
Length = 432
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 58 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 117
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 118 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 176
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 177 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 236
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 237 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 295
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 296 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 355
Query: 344 SI 345
SI
Sbjct: 356 SI 357
>gi|410981035|ref|XP_003996878.1| PREDICTED: retinoic acid receptor alpha isoform 3 [Felis catus]
Length = 459
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEAPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|344288073|ref|XP_003415775.1| PREDICTED: retinoic acid receptor beta isoform 2 [Loxodonta
africana]
Length = 455
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTETIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|283945526|ref|NP_001164665.1| retinoic acid receptor, alpha [Xenopus (Silurana) tropicalis]
Length = 458
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+++ + + ++ E ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNK-KKKEPPKADVMESYVLSPETEDLIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +E++ + + + K + + V++AK +P FTTL + DQ+ LL++
Sbjct: 204 KYTTNFSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R ++P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRNRRPKKPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|18031835|gb|AAL02361.1| retinoic acid receptor beta-2 [Mesocricetus auratus]
Length = 448
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLA 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|344286022|ref|XP_003414758.1| PREDICTED: retinoic acid receptor alpha-like isoform 1 [Loxodonta
africana]
Length = 464
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPE-VGELIEKVRKAHQETFPALCQLG 206
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+
Sbjct: 207 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKGACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ + V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEQPERVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|218156244|dbj|BAH03354.1| retinoic acid receptor alpha [Callorhinchus callorynchus]
Length = 307
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 169/297 (56%), Gaps = 16/297 (5%)
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR Q+CL +G
Sbjct: 2 DKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQRCLEVG 61
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA-------DQD 175
M +E+V+ +R + K+++ + E + I +E ++E ++ + PA +
Sbjct: 62 MSKESVRNDRNK-KKKEVPKQECSESYTITPEIEDLIEKVRKAHQETFPALCQLGKYTTN 120
Query: 176 IVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
EQ+ T + + K + + V++AKH+P FTTL + DQ+ LL+A ++LI
Sbjct: 121 NSAEQRVTLDIDLWDKFSELSTKCIIKTVEFAKHLPGFTTLTIADQITLLKAACLDILIL 180
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
R +D + + G+T+ R+ H AG G + D V +++ ++MD E G L
Sbjct: 181 RICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLS 239
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I L D + L+ + V+ L+E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 240 AICLICGDRQDLEQAEKVDKLQEPLLEALKIYVRKRRPNKPHMFPKMLMKITDLRSI 296
>gi|194389368|dbj|BAG61645.1| unnamed protein product [Homo sapiens]
Length = 441
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|148229864|ref|NP_001083723.1| retinoic acid receptor, alpha [Xenopus laevis]
gi|836655|emb|CAA60791.1| retinoic acid receptor [Xenopus laevis]
Length = 448
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 171/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 136
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+++ +V+ ++ + ++E ++ + PA
Sbjct: 137 CFEVGMSKESVRNDRNK-KKKEPPKVDVMESYVLSPETQDLIEKVRKAHKETFPALCQLG 195
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +E++ + + + K + + V++AK +P FTTL + DQ+ LL++
Sbjct: 196 KYTTNFSSEERVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACL 255
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 256 DILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 314
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R ++P F K+L+++ LR
Sbjct: 315 TGLLSAICLICGDRQDLEQPDKVDKLQEPLLEALKIYVRNRRPKKPHMFPKMLMKITDLR 374
Query: 344 SI 345
SI
Sbjct: 375 SI 376
>gi|345789100|ref|XP_003433175.1| PREDICTED: retinoic acid receptor beta [Canis lupus familiaris]
Length = 455
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|338715049|ref|XP_003363197.1| PREDICTED: retinoic acid receptor beta [Equus caballus]
Length = 455
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|291399722|ref|XP_002716265.1| PREDICTED: retinoic acid receptor, beta isoform 1 [Oryctolagus
cuniculus]
Length = 455
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|216409684|dbj|BAH02279.1| retinoic acid receptor beta [Homo sapiens]
Length = 448
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELASKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|296202774|ref|XP_002748604.1| PREDICTED: retinoic acid receptor alpha isoform 1 [Callithrix
jacchus]
Length = 457
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTL-SPEVGELIEKVRKAHQETFPALCQLG 201
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 202 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 261
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 262 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 320
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 321 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 380
Query: 344 SI 345
SI
Sbjct: 381 SI 382
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 163/324 (50%), Gaps = 35/324 (10%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
G+ N S+S N+ S I PN C +CGDR+SGKHYG ++CEGCK FFK
Sbjct: 32 GTPNGSTSGNDALSGDKI-----PNVD-------CMVCGDRSSGKHYGQFTCEGCKSFFK 79
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEV 143
R+VR++L+Y CR R+C ID+ RN+CQYCR +K+ + +R E S
Sbjct: 80 RSVRRNLTYTCRGNRDCPIDQHHRNQCQYCR--------LKKVPQSRDEERRSESASGRP 131
Query: 144 ES-----TSGT-------LIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDK 191
S T+GT + + +L AE + N NIC+ +
Sbjct: 132 SSPGQYLTNGTDPYNGQPYLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAAR 191
Query: 192 QLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR 251
LF V+WAK+IP F L L DQV LLR W+EL + + + S+ + LLA ++
Sbjct: 192 LLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHA 250
Query: 252 SSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
S V D RV E V K++ +++D E CL++I+LF D GL VE +
Sbjct: 251 SPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESI 310
Query: 310 REKVYTSLEEYTRVNHSEEPGRFA 333
+EK +LEEY R + +P RF
Sbjct: 311 QEKSQCALEEYVRNQYPSQPNRFG 334
>gi|301782149|ref|XP_002926489.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Ailuropoda
melanoleuca]
Length = 455
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|380800389|gb|AFE72070.1| retinoic acid receptor beta isoform 1, partial [Macaca mulatta]
Length = 433
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 66 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 125
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 126 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 184
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 185 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 244
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 245 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 303
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 304 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 363
Query: 344 SI 345
SI
Sbjct: 364 SI 365
>gi|545176|gb|AAB29813.1| retinoic acid receptor alpha, RAR alpha(PLZF=zinc finger protein,
PLZF-RAR alpha isoform A=fusion protein) {translocation}
[human, acute promyelocytic leukemia patient, Peptide
Mutant, 858 aa]
Length = 858
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 484 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 543
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 544 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 602
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 603 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 662
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 663 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHMAGFGPLTDLVFA-FANQLLPLEMDDAE 721
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 722 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 781
Query: 344 SI 345
SI
Sbjct: 782 SI 783
>gi|1314308|gb|AAB00112.1| nucleophosmin-retinoic acid receptor alpha fusion protein NPM-RAR
long form [Homo sapiens]
Length = 563
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 189 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 248
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 249 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 307
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 308 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 367
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 368 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 426
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 427 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 486
Query: 344 SI 345
SI
Sbjct: 487 SI 488
>gi|14916494|ref|NP_000956.2| retinoic acid receptor beta isoform 1 [Homo sapiens]
gi|114585741|ref|XP_001164404.1| PREDICTED: retinoic acid receptor beta isoform 4 [Pan troglodytes]
gi|395734071|ref|XP_002814046.2| PREDICTED: retinoic acid receptor beta isoform 1 [Pongo abelii]
gi|397511696|ref|XP_003826204.1| PREDICTED: retinoic acid receptor beta [Pan paniscus]
gi|402861717|ref|XP_003895230.1| PREDICTED: retinoic acid receptor beta [Papio anubis]
gi|426339742|ref|XP_004033801.1| PREDICTED: retinoic acid receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|38173846|gb|AAH60794.1| Retinoic acid receptor, beta [Homo sapiens]
gi|119584758|gb|EAW64354.1| retinoic acid receptor, beta, isoform CRA_a [Homo sapiens]
gi|307685775|dbj|BAJ20818.1| retinoic acid receptor, beta [synthetic construct]
gi|325495539|gb|ADZ17375.1| retinoic acid receptor beta variant 1 [Homo sapiens]
gi|410220772|gb|JAA07605.1| retinoic acid receptor, beta [Pan troglodytes]
Length = 448
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|32026|emb|CAA68398.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 170/302 (56%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K++++++ E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNK-KKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLA 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|289629241|ref|NP_001166202.1| retinoic acid receptor beta [Cavia porcellus]
gi|51092411|gb|AAP33792.2| retinoic acid receptor beta [Cavia porcellus]
Length = 410
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 168/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT+L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|133494|sp|P22605.1|RARB_MOUSE RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
Length = 482
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 115 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 174
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 175 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 233
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 234 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 293
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 294 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 352
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 353 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 412
Query: 344 SI 345
SI
Sbjct: 413 SI 414
>gi|354474027|ref|XP_003499233.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Cricetulus
griseus]
Length = 455
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 148 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTEKIRKAHQETFPSLCQLG 206
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 207 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 266
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 267 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 325
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 326 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 385
Query: 344 SI 345
SI
Sbjct: 386 SI 387
>gi|332847668|ref|XP_003315499.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Pan troglodytes]
gi|119581061|gb|EAW60657.1| retinoic acid receptor, alpha, isoform CRA_e [Homo sapiens]
Length = 478
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 104 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 163
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 164 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 222
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 223 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 282
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 283 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 341
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 342 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 401
Query: 344 SI 345
SI
Sbjct: 402 SI 403
>gi|52545866|emb|CAH56277.1| hypothetical protein [Homo sapiens]
Length = 636
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 14/301 (4%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 83 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 142
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL E I + +R P+
Sbjct: 143 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKCAKRTRKPSLPSASWAN 202
Query: 173 --------DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+ + T+ + K + + V++AK +P FTTL + D++ LL+A +
Sbjct: 203 TLRTTAQNNVSLWTLTSGTSSVNSPTKCIIKTVEFAKQLPGFTTLTIADKITLLKAACLD 262
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
+LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 263 ILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAET 321
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LRS
Sbjct: 322 GLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRS 381
Query: 345 I 345
I
Sbjct: 382 I 382
>gi|390476422|ref|XP_002759706.2| PREDICTED: retinoic acid receptor beta isoform 1 [Callithrix
jacchus]
Length = 448
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 167/311 (53%), Gaps = 34/311 (10%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKE-------RDSNEVESTSGTLIEMPVERILE---------- 160
C +GM +E+V+ +R + K+ R+S E+ + L E + E
Sbjct: 141 CFEVGMSKESVRNDRNKKKKETSKQECRESYEMTAELDDLTEKIRKAHQETFPSLCQLGK 200
Query: 161 ------AEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
AE RV P D+ + K + ++V++AK +P FT+L + DQ
Sbjct: 201 YTTNSSAEHRVPTGPGPRDK----------FSELATKCIIKIVEFAKRLPGFTSLTIADQ 250
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+ L++A ++LI R +D + + G+T+ R+ H AG G + D V T +++
Sbjct: 251 ITLMKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQL 309
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
++MD TE G L I L D + L+ V+ L+E + +L+ Y R +P F K
Sbjct: 310 LPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPK 369
Query: 335 LLLRLPSLRSI 345
+L+++ LRSI
Sbjct: 370 ILMKITDLRSI 380
>gi|344286024|ref|XP_003414759.1| PREDICTED: retinoic acid receptor alpha-like isoform 2 [Loxodonta
africana]
Length = 461
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 145 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 203
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+
Sbjct: 204 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKGACL 263
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 264 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 322
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ + V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 323 TGLLSAICLICGDRQDLEQPERVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 382
Query: 344 SI 345
SI
Sbjct: 383 SI 384
>gi|344288071|ref|XP_003415774.1| PREDICTED: retinoic acid receptor beta isoform 1 [Loxodonta
africana]
Length = 448
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+K RNRCQYCR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEP------ 171
C +GM +E+V+ +R + K+ S + E T + ++ + E ++ + P
Sbjct: 141 CFEVGMSKESVRNDRNKKKKEPSKQ-ECTESYEMTAELDDLTETIRKAHQETFPSLCQLG 199
Query: 172 -------ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
AD + ++ + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 200 KYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACL 259
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V T +++ ++MD TE
Sbjct: 260 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTE 318
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LR
Sbjct: 319 TGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR 378
Query: 344 SI 345
SI
Sbjct: 379 SI 380
>gi|193783674|dbj|BAG53585.1| unnamed protein product [Homo sapiens]
Length = 478
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 104 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 163
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 164 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 222
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 223 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 282
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 283 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 341
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 342 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPNRPHMFPKMLMKITDLR 401
Query: 344 SI 345
SI
Sbjct: 402 SI 403
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 36/310 (11%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGR---NCIIDKRQRNRCQYCR 114
C +CGDR+SGKHYG+Y+C+GC GFFKR++R++ SY CR NC +DK RN+C+ CR
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQCRSCR 67
Query: 115 YQKCLNMGMKREAVQEER---------QRTKERDSNEVESTSGTLIEMP------VERIL 159
+KC ++ M ++AVQ ER Q+ + +E S + P + +L
Sbjct: 68 LKKCFDVSMNKDAVQHERGPRSSTLRKQKMLKEAQERLELVS--VAHAPQGPSGFINTLL 125
Query: 160 EAEQRVD----------MKQEP----ADQDI-VNEQQATNICKATDKQLFQLVDWAKHIP 204
AE R+D ++ +P +D + + ++C+A K LF V WA++IP
Sbjct: 126 AAEPRMDGCGMAVNDFDLEYKPIRLQSDMSVPMYYSSPESVCEAAAKLLFMSVKWARNIP 185
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG-ILLAPGVTVYRSSAHEAGVGGIF 263
F +LP DQV+LL GW EL + S S+ ++ IL A G+ V + +
Sbjct: 186 SFMSLPFRDQVILLEEGWRELFLLGASQWSMPLEIAPILAASGMHVDNTPPEKIVDVMAT 245
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
R L E V+K + +D TE CL+ I+LF P GLK + +E +++ L EY R
Sbjct: 246 VRTLQEAVNKFKAFGVDSTEFACLKAIVLFKPAACGLKDPEQIETTQDQAQLMLGEYIRS 305
Query: 324 NHSEEPGRFA 333
+ + RF
Sbjct: 306 TYPTQVARFG 315
>gi|378925276|dbj|BAL63406.1| retinoic X receptor beta b, partial [Solea senegalensis]
Length = 182
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/189 (58%), Positives = 128/189 (67%), Gaps = 28/189 (14%)
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE---------- 170
MGMKREAVQEERQR +ER E+E + G EMPVE+ILEAE V+ K E
Sbjct: 2 MGMKREAVQEERQRNRER-EGELEVSVGVNEEMPVEKILEAETAVEQKTELHSDGGSAGN 60
Query: 171 -PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
P D TNIC+ DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIAS
Sbjct: 61 SPHDA-------VTNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIAS 113
Query: 230 FSHRSISVKDGILLAP---------GVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
FSHRSI++KD +LLA G R + A VG IFDRVLTELV+KMR+M+MD
Sbjct: 114 FSHRSIAMKDRVLLASELQRNSAGVGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQMD 173
Query: 281 KTELGCLRT 289
KTELGCLR
Sbjct: 174 KTELGCLRA 182
>gi|432910610|ref|XP_004078439.1| PREDICTED: retinoic acid receptor beta-like [Oryzias latipes]
Length = 433
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 18/304 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+V+K++ Y C RNCII+K RNRCQYCR Q+
Sbjct: 87 CFVCQDKSSGYHYGVSACEGCKGFFRRSVQKNMVYTCHRDRNCIINKITRNRCQYCRLQR 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
C +GM +E+V+ +R + K + V+ T E+ E L E+ +E
Sbjct: 147 CFAVGMSKESVRNDRSKRKAK-KEAVKMTIMETYELTAELGLVVEKICRAHRETFPSLCQ 205
Query: 178 NEQQATN----------------ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
+ TN + K + ++V++AK +P FT L + DQ+ LL+A
Sbjct: 206 LGKYTTNSSSDHRIQLDLGLWDKFSELATKCIVKVVEFAKRVPGFTGLTIADQITLLKAA 265
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
++LI R +D + + G+T+ R+ H AG G + D V T ++ ++MD+
Sbjct: 266 CLDILILRICTRYTPDQDTMTFSDGLTLTRTQIHNAGFGSLTDHVFT-FAGQLLPLEMDE 324
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TE G L I L + D + LK V++L+E + +L+ Y+R P F K L+++
Sbjct: 325 TESGLLSAICLVSGDRQDLKEPSKVDVLQEPLLEALKIYSRKRRPSMPLMFPKALMKITD 384
Query: 342 LRSI 345
LRSI
Sbjct: 385 LRSI 388
>gi|426348383|ref|XP_004041816.1| PREDICTED: retinoic acid receptor alpha isoform 2 [Gorilla gorilla
gorilla]
Length = 478
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 16/302 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 104 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 163
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA----- 172
C +GM +E+V+ +R + K+ S S TL V ++E ++ + PA
Sbjct: 164 CFEVGMSKESVRNDRNKKKKEVPKPECSESYTLTP-EVGELIEKVRKAHQETFPALCQLG 222
Query: 173 --DQDIVNEQQAT-------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
+ +EQ+ + + + K + + V++AK +P FTTL + DQ+ LL+A
Sbjct: 223 KYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACL 282
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
++LI R +D + + G+T+ R+ H AG G + D V +++ ++MD E
Sbjct: 283 DILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAE 341
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
G L I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LR
Sbjct: 342 TGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLR 401
Query: 344 SI 345
SI
Sbjct: 402 SI 403
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,198,623,415
Number of Sequences: 23463169
Number of extensions: 207584219
Number of successful extensions: 985276
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8509
Number of HSP's successfully gapped in prelim test: 553
Number of HSP's that attempted gapping in prelim test: 962251
Number of HSP's gapped (non-prelim): 14301
length of query: 347
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 204
effective length of database: 9,003,962,200
effective search space: 1836808288800
effective search space used: 1836808288800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)