BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3092
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/309 (65%), Positives = 236/309 (76%), Gaps = 10/309 (3%)
Query: 47 PNHP----LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII 102
P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+I
Sbjct: 125 PAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLI 184
Query: 103 DXXXXXXXXXXXXXXXLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE 162
D L MGMKREAVQEERQR K+R+ NEVESTS +MPVERILEAE
Sbjct: 185 DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAE 244
Query: 163 QRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
V+ K E + + TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+
Sbjct: 245 LAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 304
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+
Sbjct: 305 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRD 364
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336
M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLL
Sbjct: 365 MQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 424
Query: 337 LRLPSLRSI 345
LRLP+LRSI
Sbjct: 425 LRLPALRSI 433
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/224 (69%), Positives = 188/224 (83%), Gaps = 4/224 (1%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ 181
G KREAVQEERQR KE+ NEVESTS + +MP+ERILEAE RV EP ++DI +
Sbjct: 10 GPKREAVQEERQRNKEKSENEVESTSNSQNDMPIERILEAELRV----EPKNEDIDSRDP 65
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
++IC+A D+QL+QL++WAKHIPHFT LP+EDQV+LL++GWNELLIA FSHRS+SVKDGI
Sbjct: 66 VSDICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGI 125
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
+LA G+ V+R+ AH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR+I+LFNP+ +GLK
Sbjct: 126 MLATGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLK 185
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
S Q VE LREKVY LEEY R + ++ GRFAKLLLRLP+LRSI
Sbjct: 186 STQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSI 229
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/228 (68%), Positives = 181/228 (79%), Gaps = 6/228 (2%)
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN----- 178
KREAVQEERQR K+R+ NEVESTS +MPVERILEAE V+ K E + +
Sbjct: 21 KREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSS 80
Query: 179 -EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV 237
TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+V
Sbjct: 81 PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 140
Query: 238 KDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV 297
KDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 141 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDS 200
Query: 298 RGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 201 KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 248
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 283 bits (725), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/196 (71%), Positives = 161/196 (82%), Gaps = 6/196 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTL 209
+MPVE+ILEAE VD P ++ Q+ TNIC+A DKQLF LV+WAK IPHFT L
Sbjct: 5 DMPVEQILEAELAVD----PKIDTYIDAQKDPVTNICQAADKQLFTLVEWAKRIPHFTEL 60
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269
PLEDQV+LLRAGWNELLIA FSHRSI KDGILLA G+ V+RSSAH+AGVG IFDRVLTE
Sbjct: 61 PLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTE 120
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV+KMR+MKMDKTELGCLR ++LFNPD +GL + Q VE LREKVY SLEEYT+ + EEP
Sbjct: 121 LVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEP 180
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKLLLRLP+LRSI
Sbjct: 181 GRFAKLLLRLPALRSI 196
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 276 bits (707), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/197 (69%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 152 EMPVERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTT 208
+MPVERILEAE V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+
Sbjct: 11 DMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSD 70
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
L LEDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLT
Sbjct: 71 LTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLT 130
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELVSKM++M+MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+
Sbjct: 131 ELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQ 190
Query: 329 PGRFAKLLLRLPSLRSI 345
PGRFAKLLLRLP+LRSI
Sbjct: 191 PGRFAKLLLRLPALRSI 207
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 160/196 (81%), Gaps = 6/196 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTL 209
+MPVE+I EAE M EP D ++V + TNIC+A DKQL LV+WAK IPHF+ L
Sbjct: 1 DMPVEKIQEAE----MAVEPKDGNMVEQPNDPVTNICQAADKQLVTLVEWAKRIPHFSDL 56
Query: 210 PLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269
P++DQV+LLRAGWNELLIA+FSHRSI VKDGILLA G+ V+RSSAH+AGVG IFDRVLTE
Sbjct: 57 PIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAGVGTIFDRVLTE 116
Query: 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEP 329
LV+KMR+MKMDKTELGCLR I+LFNPD +GL +VE LREKVY SLEEY + + E+P
Sbjct: 117 LVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPEQP 176
Query: 330 GRFAKLLLRLPSLRSI 345
GRFAKLLLRLP+LRSI
Sbjct: 177 GRFAKLLLRLPALRSI 192
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVERILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 1 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 61 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSI 206
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/206 (67%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVERILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 5 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 64
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 65 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 124
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 125 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 184
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 185 YCKHKYPEQPGRFAKLLLRLPALRSI 210
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 9 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 68
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 69 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 128
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 129 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 188
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 189 PEQPGRFAKLLLRLPALRSI 208
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 6 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 65
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 66 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 125
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 126 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 185
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 186 PEQPGRFAKLLLRLPALRSI 205
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 9 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 68
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 69 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 128
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 129 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 188
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 189 PEQPGRFAKLLLRLPALRSI 208
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 138/206 (66%), Positives = 161/206 (78%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDW 199
TS +MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+W
Sbjct: 1 TSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 61 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSI 206
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 1 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 60
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 61 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 120
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 121 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 180
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 181 PEQPGRFAKLLLRLPALRSI 200
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 273 bits (699), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 3 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 62
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 63 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 122
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 123 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 182
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 183 PEQPGRFAKLLLRLPALRSI 202
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 273 bits (699), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 2 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 61
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 62 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 121
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 122 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 181
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 182 PEQPGRFAKLLLRLPALRSI 201
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 273 bits (699), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 3 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 62
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 63 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 122
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 123 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 182
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 183 PEQPGRFAKLLLRLPALRSI 202
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 273 bits (698), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 2 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 61
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 62 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 121
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 122 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 181
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 182 PEQPGRFAKLLLRLPALRSI 201
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/200 (68%), Positives = 159/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 137/202 (67%), Positives = 161/202 (79%), Gaps = 3/202 (1%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQLVDWAKHI 203
TS +MP+ERI+EAE+RV+ +P A N NIC+AT KQLFQLV WAK +
Sbjct: 2 TSNLQADMPLERIIEAEKRVEC-NDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLV 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHFT+LPL DQV LLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+AH GVG I+
Sbjct: 61 PHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIY 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYTR
Sbjct: 121 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
H EPGRFAKLLLRLP+LRSI
Sbjct: 181 THPNEPGRFAKLLLRLPALRSI 202
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 135/202 (66%), Positives = 158/202 (78%), Gaps = 8/202 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN--------EQQATNICKATDKQLFQLVDWAKHI 203
EMPV+RILEAE V+ K + + TNIC+A DKQLF LV+WAK I
Sbjct: 1 EMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRI 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IF
Sbjct: 61 PHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIF 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y +
Sbjct: 121 DRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQ 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ E+ GRFAKLLLRLP+LRSI
Sbjct: 181 KYPEQQGRFAKLLLRLPALRSI 202
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/200 (67%), Positives = 158/200 (79%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVE+ILEAE V+ K E + + TNIC+A DKQLF LV+WAK IPH
Sbjct: 5 DMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 64
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIAS SHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 124
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 125 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 184
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 185 PEQPGRFAKLLLRLPALRSI 204
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/201 (66%), Positives = 157/201 (78%), Gaps = 8/201 (3%)
Query: 153 MPVERILEAEQRVDMKQEPADQDIVN--------EQQATNICKATDKQLFQLVDWAKHIP 204
MPV+RILEAE V+ K + + TNIC+A DKQLF LV+WAK IP
Sbjct: 1 MPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIP 60
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
HF++LPL+DQV+LLRAGWNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFD
Sbjct: 61 HFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFD 120
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
RVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL + VE+LREKVY SLE Y +
Sbjct: 121 RVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQK 180
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+ E+ GRFAKLLLRLP+LRSI
Sbjct: 181 YPEQQGRFAKLLLRLPALRSI 201
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/198 (68%), Positives = 157/198 (79%), Gaps = 6/198 (3%)
Query: 152 EMPVERILEAEQRVDMKQE---PADQDIVNEQQ-ATNICKATDKQLFQLVDWAKHIPHFT 207
+MPV++ILEAE D K E P +Q VNE +NICKA D+QL LV+WAK IPHF+
Sbjct: 28 DMPVDKILEAELISDPKVEQVVPFEQ--VNENDPVSNICKAADRQLVTLVEWAKRIPHFS 85
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
+LPLEDQV+LLRAGWNELLIASFSHRSI VKD ILLA G+ V+R SAH+AGVG IFDRVL
Sbjct: 86 SLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASGLHVHRHSAHQAGVGPIFDRVL 145
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
TELVSKMR+M MDKTELGCLR ++LFNPDV+ +E LREKVY SLE Y R + +
Sbjct: 146 TELVSKMRDMMMDKTELGCLRAVVLFNPDVKNPSDSAHIESLREKVYASLEAYCRSKYPD 205
Query: 328 EPGRFAKLLLRLPSLRSI 345
+PGRFAKLLLRLP+LRSI
Sbjct: 206 QPGRFAKLLLRLPALRSI 223
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 142/234 (60%), Gaps = 38/234 (16%)
Query: 152 EMPVERILEAEQRVD----------MKQEPADQDIVNEQQATN-ICKATDKQLFQLVDWA 200
+ +ERI+EAEQR + ++ P + + A + +C+ +KQLFQ+V++A
Sbjct: 8 DFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYA 67
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIA--------------------------SFSHRS 234
+ +PHF +PL+DQV+LL+A W ELLIA SF RS
Sbjct: 68 RMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRS 127
Query: 235 ISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILF 293
++ + L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL CL+ IIL+
Sbjct: 128 PGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 187
Query: 294 NPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
NPD+RG+KS+ +EM REKVY L+E+ R+ H + GRFA+LLLRLP+LRSI +
Sbjct: 188 NPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISL 241
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 131/208 (62%), Gaps = 27/208 (12%)
Query: 152 EMPVERILEAEQRVDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKH 202
E+ +ER+LE E V E D ++ + +A +++C+ +KQ+ LV WA+
Sbjct: 5 ELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARD 64
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV----KDGI--------------LLA 244
IPHF+ L +EDQ+LL++ WNELL+ + + RS+ +DG+ L
Sbjct: 65 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLM 124
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
PG+T++R+SA +AGVG IFDRVL+EL KMR +++D+ E L+ IIL NPDV+GLK++Q
Sbjct: 125 PGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQ 184
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRF 332
VE+LREK++ L+EY R + S E GRF
Sbjct: 185 EVEVLREKMFLCLDEYCRRSRSSEEGRF 212
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 131/208 (62%), Gaps = 27/208 (12%)
Query: 152 EMPVERILEAEQRVDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKH 202
E+ +ER+LE E V E D ++ + +A +++C+ +KQ+ LV WA+
Sbjct: 4 ELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARD 63
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV----KDGI--------------LLA 244
IPHF+ L +EDQ+LL++ WNELL+ + + RS+ +DG+ L
Sbjct: 64 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLM 123
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
PG+T++R+SA +AGVG IFDRVL+EL KMR +++D+ E L+ IIL NPDV+GLK++Q
Sbjct: 124 PGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQ 183
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRF 332
VE+LREK++ L+EY R + S E GRF
Sbjct: 184 EVEVLREKMFLCLDEYCRRSRSSEEGRF 211
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 67/86 (77%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXX 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIID
Sbjct: 1 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQR 60
Query: 108 XXXXXXXXXXXLNMGMKREAVQEERQ 133
L GMKREAVQEERQ
Sbjct: 61 NRCQYCRYQKCLTCGMKREAVQEERQ 86
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 67/87 (77%)
Query: 47 PNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXX 106
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIID
Sbjct: 2 SNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQ 61
Query: 107 XXXXXXXXXXXXLNMGMKREAVQEERQ 133
L GMKREAVQEERQ
Sbjct: 62 RNRCQYCRYQKCLTCGMKREAVQEERQ 88
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXX 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 114 XXXXXLNMGMKREAVQEERQRTKERDSNEVESTS 147
L MGMKREAVQEERQR K+R+ NEVESTS
Sbjct: 62 RYQKCLAMGMKREAVQEERQRGKDRNENEVESTS 95
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 121 bits (303), Expect = 6e-28, Method: Composition-based stats.
Identities = 54/81 (66%), Positives = 63/81 (77%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXX 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
Query: 114 XXXXXLNMGMKREAVQEERQR 134
L MGMKREAVQEERQR
Sbjct: 64 RYQKCLAMGMKREAVQEERQR 84
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 121 bits (303), Expect = 7e-28, Method: Composition-based stats.
Identities = 54/81 (66%), Positives = 63/81 (77%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXX 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 114 XXXXXLNMGMKREAVQEERQR 134
L MGMKREAVQEERQR
Sbjct: 62 RYQKALAMGMKREAVQEERQR 82
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL
Sbjct: 39 DVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLL 98
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
++R+S E + + +RVL ELV +E+++D E CL+ I+ F+PD +GL
Sbjct: 99 GNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDP 157
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 158 VKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 199
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + + S+ + LL
Sbjct: 41 NICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLL 100
Query: 244 APGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
A ++ S V D R+ E V K++ + +D E CL+ I+LF D GL
Sbjct: 101 A-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLS 159
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 160 DVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 203
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 117 bits (293), Expect = 9e-27, Method: Composition-based stats.
Identities = 52/79 (65%), Positives = 61/79 (77%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXX 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
Query: 114 XXXXXLNMGMKREAVQEER 132
L MGMKREAVQEER
Sbjct: 64 RYQKCLAMGMKREAVQEER 82
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 97/163 (59%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L+ + RS+ KD +L
Sbjct: 44 TDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLL 103
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L V R A + + R+L ELV +E+++D E CL+ II F+PD +GL
Sbjct: 104 LGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSD 163
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 164 PGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 206
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +L
Sbjct: 38 ADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLL 97
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L V R A + + R+L ELV +E+++D E L+ II F+PD +GL
Sbjct: 98 LGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSD 157
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 158 PGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 200
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +L
Sbjct: 44 ADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLL 103
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L V R A + + R+L ELV +E+++D E L+ II F+PD +GL
Sbjct: 104 LGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSD 163
Query: 303 QQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 164 PGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 206
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 113 bits (282), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/76 (64%), Positives = 58/76 (76%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXX 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 114 XXXXXLNMGMKREAVQ 129
L MGMKREAVQ
Sbjct: 62 RYQKCLAMGMKREAVQ 77
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R + K+G I
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 108
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y A +AG + +++ ELV+K+R ++ D+ E CL+ ++LF+ DV+
Sbjct: 109 LVTGQQVDYSIIASQAG--ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 166
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I +
Sbjct: 167 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 215
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R + K+G I
Sbjct: 59 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 118
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y A +AG + +++ ELV+K+R ++ D+ E CL+ ++LF+ DV+
Sbjct: 119 LVTGQQVDYSIIASQAG--ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 176
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I +
Sbjct: 177 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 225
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 52 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 108
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 109 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 167
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 168 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 218
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 52 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 108
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 109 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 167
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 168 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 218
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 28 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 84
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 85 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 143
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 144 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 194
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 44 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 100
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 101 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 159
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 160 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 210
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 27 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 83
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 84 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 142
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 143 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 193
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL++ W E+LI +
Sbjct: 31 DSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY 87
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+S +D ++ A + + AG+ + + +L +LV K + MK++K E L+ I L
Sbjct: 88 RSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIAL 146
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
N D ++ + V+ L++ ++ +L++Y H E+P R K+L+ LP LR
Sbjct: 147 ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLR 197
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R + K+G I
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 108
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y A +AG + +++ ELV+K+R ++ D+ E CL+ ++LF+ DV+
Sbjct: 109 LVTGQQVDYSIIASQAG--ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 166
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I +
Sbjct: 167 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 215
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R + K+G I
Sbjct: 61 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 120
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y A +AG + +++ ELV+K+R ++ D+ E CL+ ++LF+ DV+
Sbjct: 121 LVTGQQVDYSIIASQAG--ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 178
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I +
Sbjct: 179 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 227
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI-SVKDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R + K+G I
Sbjct: 60 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 119
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y A +AG + +++ ELV+K+R ++ D+ E CL+ ++LF+ DV+
Sbjct: 120 LVTGQQVDYSIIASQAG--ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK 177
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I +
Sbjct: 178 NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISM 226
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 146/338 (43%), Gaps = 53/338 (15%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +CGD+ASG HYGV++CEGCKGFF+RT+R L Y R NC I
Sbjct: 53 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYD-RCDLNCRIHKKSRNKCQYCRFQK 111
Query: 118 XLNMGMKREAVQEER--QRTKERDSNEVES------------------------TSGTLI 151
L +GM A++ R Q KE+ E+ S S L
Sbjct: 112 CLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLT 171
Query: 152 EMPVERILEAEQR-------VDMKQEPADQDIVNEQQATNI---CKATDKQLFQ------ 195
+ IL + DM +D + + T + K ++FQ
Sbjct: 172 KAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRS 231
Query: 196 ------LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTV 249
+ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 232 VEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGF 289
Query: 250 YRSSAHEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVE 307
++ G F E K +++D ++L +I+ + D GL + + +E
Sbjct: 290 MTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIE 349
Query: 308 MLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+++ + +LE ++NH E FAKLL ++ LR I
Sbjct: 350 DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 387
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 124/202 (61%), Gaps = 11/202 (5%)
Query: 154 PVERILEAEQRVDMKQEPADQDIVNEQQATN--ICKATDKQLFQLVDWAKHIPHFTTLPL 211
P E ++A+ ++QE A++ +E+ +T +CK D+ LF +V+WA+ F L +
Sbjct: 124 PDEPQVQAKIMAYLQQEQANRS-KHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKV 182
Query: 212 EDQVLLLRAGWNELLIASFSHRSI-SVKDG-ILLAPGVTV-YRSSAHEAGVGGIFDRVLT 268
+DQ+ LL+ W+ELLI +R + K+G I L G V Y A +AG + +++
Sbjct: 183 DDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAG--ATLNNLMS 240
Query: 269 ---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
ELV+K+R ++ D+ E CL+ ++LF+ DV+ L++ Q+VE ++E+V +L +YT N+
Sbjct: 241 HAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNY 300
Query: 326 SEEPGRFAKLLLRLPSLRSIEV 347
++ +F +LLLRLP +R+I +
Sbjct: 301 PQQTEKFGQLLLRLPEIRAISM 322
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 104/167 (62%), Gaps = 8/167 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-KDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R ++ K+G I
Sbjct: 52 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 111
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y + V F+ +L+ ELV ++R ++ D+ E CL+ ++LF+ DV+
Sbjct: 112 LVTGEHVDYSTIISHTEVA--FNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVK 169
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP LR+I
Sbjct: 170 NLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAI 216
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 104/167 (62%), Gaps = 8/167 (4%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-KDG-IL 242
+CK D+ LF +V+WA+ F L ++DQ+ LL+ W+ELLI +R ++ K+G I
Sbjct: 47 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 106
Query: 243 LAPGVTV-YRSSAHEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L G V Y + V F+ +L+ ELV ++R ++ D+ E CL+ ++LF+ DV+
Sbjct: 107 LVTGEHVDYSTIISHTEVA--FNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVK 164
Query: 299 GLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ Q+VE ++E+V +L +YT N+ ++ +F +LLLRLP +R+I
Sbjct: 165 NLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAI 211
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 95.5 bits (236), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/66 (62%), Positives = 48/66 (72%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+ID
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQK 60
Query: 118 XLNMGM 123
L MGM
Sbjct: 61 CLAMGM 66
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 91.7 bits (226), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++D
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLK 61
Query: 117 XXLNMGMKREAVQEER 132
GMK+EAVQ ER
Sbjct: 62 KCFRAGMKKEAVQNER 77
>pdb|3A9E|B Chain B, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 269
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + + V++AK +P FTTL + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 82 KCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 141
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V +++ ++MD E G L I L D + L+ V+ML+
Sbjct: 142 RTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 200
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R P F K+L+++ LRSI
Sbjct: 201 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 235
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 11/168 (6%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC++ + LF + WA+ IP F L + L+RA WNEL + + + +LA
Sbjct: 39 ICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILA 98
Query: 245 PGVTVYRSSAHEAGVGGIFDRV---------LTELVSKMREMKMDKTELGCLRTIILFNP 295
V ++S E + G DR+ L E + M ++ +D E L+ I+LF+P
Sbjct: 99 AIVNHLQNSIQEDKLSG--DRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSP 156
Query: 296 DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
D GL S +E +E L++Y + +SE+ R A++L+RLP+LR
Sbjct: 157 DHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALR 204
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + + V++AK +P FTTL + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 53 KCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 112
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V +++ ++MD E G L I L D + L+ V+ML+
Sbjct: 113 RTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 171
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R P F K+L+++ LRSI
Sbjct: 172 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 206
>pdb|3KMR|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With An Agonist Ligand (Am580) And A Coactivator
Fragment
pdb|3KMZ|B Chain B, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
pdb|3KMZ|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
Length = 266
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + + V++AK +P FTTL + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 79 KCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 138
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V +++ ++MD E G L I L D + L+ V+ML+
Sbjct: 139 RTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 197
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R P F K+L+++ LRSI
Sbjct: 198 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 232
>pdb|4DQM|A Chain A, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
pdb|4DQM|C Chain C, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
Length = 234
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + + V++AK +P FTTL + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 53 KCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 112
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V +++ ++MD E G L I L D + L+ V+ML+
Sbjct: 113 RTQMHNAGFGPLTDLVFA-FANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQ 171
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R P F K+L+++ LRSI
Sbjct: 172 EPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 206
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 82 KCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 141
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V T +++ ++MD TE G L I L D + L+ V+ L+
Sbjct: 142 RTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQ 200
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 201 EPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSI 235
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
QEPA + +C+ D+ +VDWA+ F L + DQ+ LL+ W+ELL+
Sbjct: 34 QEPAKSRSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVL 93
Query: 229 SFSHRSISV--KDGILLAPGVTVYRSSAHEAGVGGIFDRVL--TELVSKMREMKMDKTEL 284
+R + +D ILL G V S+ + VL ELV ++ +++D+ E
Sbjct: 94 DHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEF 153
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ +ILF+ DV+ L + +V+ +EK +L +YT ++ +F +LLL L +R+
Sbjct: 154 VCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRA 213
Query: 345 IEV 347
+ +
Sbjct: 214 LSM 216
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++LI R +D + + G+T+
Sbjct: 80 KCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 139
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V T +++ ++MD TE G L I L D + L+ V+ L+
Sbjct: 140 RTQMHNAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQ 198
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 199 EPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSI 233
>pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
QEPA + +C+ D+ +VDWA+ F L + DQ+ LL+ W+ELL+
Sbjct: 28 QEPAKSRSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVL 87
Query: 229 SFSHRSISV--KDGILLAPGVTVYRSSAHEAGVGGIFDRVL--TELVSKMREMKMDKTEL 284
+R + +D ILL G V S+ + VL ELV ++ +++D+ E
Sbjct: 88 DHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEF 147
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ +ILF+ DV+ L + +V+ +EK +L +YT ++ +F +LLL L +R+
Sbjct: 148 VCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRA 207
Query: 345 IEV 347
+ +
Sbjct: 208 LSM 210
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID
Sbjct: 10 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 69
Query: 118 XLNMGMKREAVQ 129
L +GM+REAVQ
Sbjct: 70 CLKVGMRREAVQ 81
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
QEPA + + + D+ +VDWA+ F L + DQ+ LL+ W+ELL+
Sbjct: 32 QEPAKSRSDQPAPFSLLXRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVL 91
Query: 229 SFSHRSISV--KDGILLAPGVTVYRSSAHEAGVGGIFDRVL--TELVSKMREMKMDKTEL 284
+R + +D ILL G V S+ + VL ELV ++ +++D+ E
Sbjct: 92 DHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEF 151
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRS 344
CL+ +ILF+ DV+ L + +V+ +EK +L +YT ++ +F +LLL L +R+
Sbjct: 152 VCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRA 211
Query: 345 IEV 347
+ +
Sbjct: 212 LSM 214
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+C D+++ + WAK IP F++L L DQ+ +L++ W E+L+ + RS+ ++D +
Sbjct: 56 ATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELA 115
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
A + + A AG+G + L +LV +++ +++++ E L+ + L N D ++
Sbjct: 116 FAEDLVLDEEGARAAGLGEL-GAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIED 174
Query: 303 QQVVEMLREKVYTSLEEY 320
+ VE LRE ++ +L EY
Sbjct: 175 AEAVEQLREALHEALLEY 192
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+C D+++ + WAK IP F++L L DQ+ +L++ W E+L+ + RS+ ++D +
Sbjct: 51 ATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELA 110
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
A + + A AG+G + L +LV +++ +++++ E L+ + L N D ++
Sbjct: 111 FAEDLVLDEEGARAAGLGEL-GAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIED 169
Query: 303 QQVVEMLREKVYTSLEEY 320
+ VE LRE ++ +L EY
Sbjct: 170 AEAVEQLREALHEALLEY 187
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+C D+++ + WAK IP F++L L DQ+ +L++ W E+L+ + RS+ ++D +
Sbjct: 50 ATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELA 109
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
A + + A AG+G + L +LV +++ +++++ E L+ + L N D ++
Sbjct: 110 FAEDLVLDEEGARAAGLGEL-GAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIED 168
Query: 303 QQVVEMLREKVYTSLEEY 320
+ VE LRE ++ +L EY
Sbjct: 169 AEAVEQLREALHEALLEY 186
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++V++AKHIP F L DQV LL+AG E+L+ F+ +VKD ++ T Y S
Sbjct: 80 EVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASL-FNVKDQTVMFLSRTTY--SL 136
Query: 255 HEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
E G G+ D + + K+ + + + ELG ++L + D G+++ VE L+E
Sbjct: 137 QELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQET 196
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +L N E RF KLLL+LP LR++
Sbjct: 197 LLRALRALVLKNRPLETSRFTKLLLKLPDLRTL 229
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 79.0 bits (193), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+
Sbjct: 7 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 66
Query: 118 XLNMGMKREAVQEERQRTKE 137
+GM +E+V+ +R + K+
Sbjct: 67 CFEVGMSKESVRNDRNKKKK 86
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 48/78 (61%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +CGD+ SG HYG+ +CE CKGFFKRTV+ + Y C E +NC ID
Sbjct: 11 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQ 70
Query: 117 XXLNMGMKREAVQEERQR 134
L++GMK EAV+ +R R
Sbjct: 71 KCLSVGMKLEAVRADRMR 88
>pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI--SVKDGILL 243
CK D+ LF VDWA++ F L ++DQ LL+ W++ L+ H I + D L
Sbjct: 52 CKVLDQNLFSQVDWARNTVFFKDLKVDDQXKLLQHSWSDXLVLDHLHHRIHNGLPDETQL 111
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
G S GV + D EL +K++++K D + C + +IL NP VRG+ ++
Sbjct: 112 NNGQVFNLXSLGLLGVPQLGD-YFNELQNKLQDLKFDXGDYVCXKFLILLNPSVRGIVNR 170
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+ V + V +L +YT + +F L+ LP + + V
Sbjct: 171 KTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAXAV 214
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTV 249
D+++ + WAK IP F++L L DQ+ +L++ W E+L+ + RS+ ++D + A + +
Sbjct: 57 DREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVL 116
Query: 250 YRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
A AG+G + L +LV +++ +++++ E L+ + L N D ++ + VE L
Sbjct: 117 DEEGARAAGLGEL-GAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQL 175
Query: 310 REKVYTSLEEY 320
RE ++ +L EY
Sbjct: 176 REALHEALLEY 186
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++L+ R +D + + G+T+
Sbjct: 59 KCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLN 118
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V ++ ++MD TE G L I L D L+ + V+ L+
Sbjct: 119 RTQMHNAGFGPLTDLVFA-FAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQ 177
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L Y R +P F ++L+++ LR I
Sbjct: 178 EPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGI 212
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +CGD+ SG HYG+ +CE CKGFFKRTV+ + Y C E ++C ID
Sbjct: 3 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQ 62
Query: 117 XXLNMGMKREAVQEERQR 134
L +GM+ EAV+ +R R
Sbjct: 63 KCLTVGMRLEAVRADRMR 80
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++L+ R +D + + G+T+
Sbjct: 54 KCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLN 113
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V ++ ++MD TE G L I L D L+ + V+ L+
Sbjct: 114 RTQMHNAGFGPLTDLVFA-FAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQ 172
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L Y R +P F ++L+++ LR I
Sbjct: 173 EPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGI 207
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++L+ R +D + + G+T+
Sbjct: 80 KCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLN 139
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V ++ ++MD TE G L I L D L+ + V+ L+
Sbjct: 140 RTQMHNAGFGPLTDLVFA-FAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQ 198
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L Y R +P F ++L+++ LR I
Sbjct: 199 EPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGI 233
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
K + ++V++AK +P FT L + DQ+ LL+A ++L+ R +D + + G+T+
Sbjct: 55 KCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLN 114
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
R+ H AG G + D V ++ ++MD TE G L I L D L+ + V+ L+
Sbjct: 115 RTQMHNAGFGPLTDLVFA-FAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQ 173
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E + +L Y R +P F ++L+++ LR I
Sbjct: 174 EPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGI 208
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 74.3 bits (181), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL--SYACREGRNCIIDXXXXXXX 110
GS LC +CGD+A+G HY +CEGCKGFF+RT++K L SY+C+ CIID
Sbjct: 1 GSDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQC 60
Query: 111 XXXXXXXXLNMGMKREAVQEERQRTKER 138
+ +GM + V ++ +R +R
Sbjct: 61 QECRFKKCIYVGMATDLVLDDSKRLAKR 88
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +CGDRASG HY +CEGCKGFF+R+V K Y C+ GR C +D
Sbjct: 8 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 67
Query: 117 XXLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
L +GM+ E V E Q +R + + + P
Sbjct: 68 KCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSP 105
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+ E+++ S R + I + R
Sbjct: 64 EIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDF 123
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AG+ F + E M E++++ E L I +F+ D ++ Q VE L+
Sbjct: 124 AKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYV 183
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L Y +NH +P F ++L++L SLR++
Sbjct: 184 EALHAYVSINHPHDPLMFPRMLMKLVSLRTL 214
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+ E+++ S R + I + R
Sbjct: 86 EIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDF 145
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AG+ F + E M E++++ E L I +F+ D ++ Q VE L+
Sbjct: 146 AKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYV 205
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L Y +NH +P F ++L++L SLR++
Sbjct: 206 EALHAYVSINHPHDPLMFPRMLMKLVSLRTL 236
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +CGDRASG HY +CEGCKGFF+R+V K Y C+ GR C +D
Sbjct: 10 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 69
Query: 117 XXLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
L +GM+ E V E Q +R + + + P
Sbjct: 70 KCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSP 107
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NC+I+
Sbjct: 8 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 67
Query: 118 XLNMGMKREAVQ 129
+GM +E+V+
Sbjct: 68 CFEVGMSKESVR 79
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 12 EQLVLTLLEAEPPNVLVSRPS-MPFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSL 70
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 71 LDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 129
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
S+ RE+K+ E C++ +IL N + L S
Sbjct: 130 TSRFRELKLQHKEYLCVKAMILLNSSMYPLAS 161
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 12 EQLVLTLLEAEPPNVLVSRPS-MPFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSL 70
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 71 LDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 129
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
S+ RE+K+ E C++ +IL N + L S
Sbjct: 130 TSRFRELKLQHKEYLCVKAMILLNSSMYPLAS 161
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
++ K DK+L ++ WAK IP F L L DQV LL + W E+L+ RSI ++
Sbjct: 41 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESSWMEVLMMGLMWRSIDHPGKLIF 100
Query: 244 APGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGL 300
AP + + R G+ IFD +L S+ RE+K+ E C++ +IL N + L
Sbjct: 101 APDLVLDRDEGKSVEGILEIFDMLLAT-TSRFRELKLQHKEYLCVKAMILLNSSMYPL 157
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+++ + R + I T +
Sbjct: 70 EIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDF 129
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E MR + +D E L I +F+ D ++ VE L++
Sbjct: 130 HRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 189
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF ++L++L SLR++
Sbjct: 190 EALLSYTRIKRPQDQLRFPRMLMKLVSLRTL 220
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+++ + R + I T +
Sbjct: 73 EIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDF 132
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E MR + +D E L I +F+ D ++ VE L++
Sbjct: 133 HRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 192
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF ++L++L SLR++
Sbjct: 193 EALLSYTRIKRPQDQLRFPRMLMKLVSLRTL 223
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+++ + R + I T +
Sbjct: 77 EIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDF 136
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E MR + +D E L I +F+ D ++ VE L++
Sbjct: 137 HRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 196
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF ++L++L SLR++
Sbjct: 197 EALLSYTRIKRPQDQLRFPRMLMKLVSLRTL 227
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 50 DIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGC 109
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R D + L+ + V R G+G + D + EL + +D
Sbjct: 110 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDD 168
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRL 339
TE+ L+ ++L + D GL +E +E + E Y VNH + P + KLL+++
Sbjct: 169 TEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHY--VNHRKHNIPHFWPKLLMKV 226
Query: 340 PSLRSI 345
LR I
Sbjct: 227 TDLRMI 232
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+++ + R + I T +
Sbjct: 67 EIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDF 126
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E MR + +D E L I +F+ D ++ VE L++
Sbjct: 127 HRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 186
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF ++L++L SLR++
Sbjct: 187 EALLSYTRIKRPQDQLRFPRMLMKLVSLRTL 217
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 54 DIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGC 113
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R D + L+ + V R G+G + D + EL + +D
Sbjct: 114 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDD 172
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRL 339
TE+ L+ ++L + D GL +E +E + E Y VNH + P + KLL+++
Sbjct: 173 TEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHY--VNHRKHNIPHFWPKLLMKV 230
Query: 340 PSLRSI 345
LR I
Sbjct: 231 TDLRMI 236
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 54 DIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGC 113
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R D + L+ + V R G+G + D + EL + +D
Sbjct: 114 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDD 172
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRL 339
TE+ L+ ++L + D GL +E +E + E Y VNH + P + KLL+++
Sbjct: 173 TEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHY--VNHRKHNIPHFWPKLLMKV 230
Query: 340 PSLRSI 345
LR I
Sbjct: 231 TDLRMI 236
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 54 DIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGC 113
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R D + L+ + V R G+G + D + EL + +D
Sbjct: 114 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDD 172
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRL 339
TE+ L+ ++L + D GL +E +E + E Y VNH + P + KLL+++
Sbjct: 173 TEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHY--VNHRKHNIPHFWPKLLMKV 230
Query: 340 PSLRSI 345
LR I
Sbjct: 231 TDLRMI 236
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 52 DIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGC 111
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R D + L+ + V R G+G + D + EL + +D
Sbjct: 112 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDD 170
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRL 339
TE+ L+ ++L + D GL +E +E + E Y VNH + P + KLL+++
Sbjct: 171 TEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHY--VNHRKHNIPHFWPKLLMKV 228
Query: 340 PSLRSI 345
LR I
Sbjct: 229 TDLRMI 234
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++V++AK IP F L DQV LL+AG E+L F+ + + + G
Sbjct: 35 EVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDL 94
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H G G + + E K+ +++ E ++L + D G+++ VE L+E +
Sbjct: 95 HSXGAGDLLNSXF-EFSEKLNALQLSDEEXSLFTAVVLVSADRSGIENVNSVEALQETLI 153
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L NH E F KLLL+LP LRS+
Sbjct: 154 RALRTLIXKNHPNEASIFTKLLLKLPDLRSL 184
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 72.0 bits (175), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C++CGD AS +HYGV +CEGCKGFFKRTV+K Y C ++C +D
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 118 XLNMGMKREAVQEE 131
L +GM +E V+ +
Sbjct: 63 CLAVGMVKEVVRTD 76
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 4 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 62
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 63 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 121
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 122 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 151
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR-SS 253
++V++AK IP F L DQV LL+AG E+L+ F+ K+ + G Y
Sbjct: 30 EVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASL-FDAKERTVTFLGSKKYSVDD 88
Query: 254 AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKV 313
H G G + + + E K+ +++ E+ ++L + D G+++ VE L+E +
Sbjct: 89 LHSMGAGDLLNSMF-EFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETL 147
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L NH E F KLLL+LP LRS+
Sbjct: 148 IRALRTLIMKNHPNEASIFTKLLLKLPDLRSL 179
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 71.6 bits (174), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 51 LCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA-CREGRNCIIDXXXXXX 109
L G LC +CGD ASG HYGV +CEGCKGFF+R++++++ Y C + NC I
Sbjct: 3 LNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNR 62
Query: 110 XXXXXXXXXLNMGMKREAVQEER--QRTKER 138
L++GM R+AV+ R +R K+R
Sbjct: 63 CQQCRFKKCLSVGMSRDAVRFGRIPKREKQR 93
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++V++AK IP F L DQV LL+AG E+L F+ + + + G
Sbjct: 30 EVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDL 89
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H G G + + E K+ +++ E ++L + D G+++ VE L+E +
Sbjct: 90 HSXGAGDLLNSXF-EFSEKLNALQLSDEEXSLFTAVVLVSADRSGIENVNSVEALQETLI 148
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L NH E F KLLL+LP LRS+
Sbjct: 149 RALRTLIXKNHPNEASIFTKLLLKLPDLRSL 179
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL + W E+L+ RS+ +L A
Sbjct: 47 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFA 106
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 107 PNLLLDRNQGKSVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 164
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 165 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 218
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL + W E+L+ RS+ +L A
Sbjct: 47 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFA 106
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 107 PNLLLDRNQGKSVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 164
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 165 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 218
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL + W E+L+ RS+ +L A
Sbjct: 43 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFA 102
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 103 PNLLLDRNQGKSVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 160
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 161 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 214
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL + W E+L+ RS+ +L A
Sbjct: 43 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFA 102
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 103 PNLLLDRNQGKSVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 160
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 161 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 214
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-KDGI 241
++ K +++L L++WAK++P +T L L DQV L+ W ELL+ + + RSI +
Sbjct: 39 NSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSL 98
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
AP + + RSS + IF++V + +M + + K EL L+ ++L N +VR L
Sbjct: 99 AFAPDLVLDRSSWSTVEMTEIFEQV-AAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLA 157
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
S + +++ + ++ + + H + +LL L +R
Sbjct: 158 SYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIR 199
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 32 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 90
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 91 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 149
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 150 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 179
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 18 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 76
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 77 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 135
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 136 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 165
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 108
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 109 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 166
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 12 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 70
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 71 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 129
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 130 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 159
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 71.2 bits (173), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL--SYACREGRNCIIDXXXXXXXXXXX 114
LC +CGD+A+G HY +CEGCKGFF+RT++K+L SY+C+ C+ID
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 62
Query: 115 XXXXLNMGMKREAVQEERQRTKER 138
+ +GM + V ++ +R +R
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKR 86
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 65 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 124
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 125 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 182
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 183 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 236
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 20 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 78
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 79 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 137
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 138 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 167
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 6 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 64
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 65 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 123
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 124 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 153
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 6 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 64
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 65 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 123
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 124 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 153
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 4 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 62
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 63 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 121
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 122 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 151
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 53 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 112
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 113 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 170
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 171 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 224
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 7 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 65
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 66 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 124
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 125 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 154
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 52 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 111
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 112 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 169
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 170 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 223
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 45 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 104
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 105 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 162
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 163 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 216
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+++ + R + I T +
Sbjct: 73 EIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETESITFLKDFTYSKDDF 132
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E M + +D E L I +F+ D ++ VE L++
Sbjct: 133 HRAGLQVEFINPIFEFSRAMSSLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 192
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF ++L++L SLR++
Sbjct: 193 EALLSYTRIKRPQDQLRFPRMLMKLVSLRTL 223
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 7 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 65
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 66 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 124
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 125 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 154
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 52 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 111
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 112 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 169
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 170 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 223
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 6 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 64
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 65 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 123
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGL 300
S+ RE+K+ E C++ +IL N + L
Sbjct: 124 TSRFRELKLQHKEYLCVKAMILLNSSMYPL 153
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 108
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 109 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 166
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>pdb|3UVV|A Chain A, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 265
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 166 DMKQEP----ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
D+ Q P D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+
Sbjct: 50 DIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGC 109
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
E++ + R + + L+ + V R G+G + D + +L + +D
Sbjct: 110 CMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIF-DLGKSLSAFNLDD 168
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TE+ L+ ++L + D GL +E +E + E Y P + KLL+++
Sbjct: 169 TEVALLQAVLLMSSDRTGLICVDKIEKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTD 228
Query: 342 LRSI 345
LR I
Sbjct: 229 LRMI 232
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 45 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 104
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 105 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 162
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 163 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 216
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 108
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 109 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 166
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 4 EQLVLTLLEAEPPHVLISRPS-APFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 62
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 63 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLAT- 121
Query: 271 VSKMREMKMDKTELGCLRTIILFN 294
S+ RE+K+ E C++ +IL N
Sbjct: 122 TSRFRELKLQHKEYLCVKAMILLN 145
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 65 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 124
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 125 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 182
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 183 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 236
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 108
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 109 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 166
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 46 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 105
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 106 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 163
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 164 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 217
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 43 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 102
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 103 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 160
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 161 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 214
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 52 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 111
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 112 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 169
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 170 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 223
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 53 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 112
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 113 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 170
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 171 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 224
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 45 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 104
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 105 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 162
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 163 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 216
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 46 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 105
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 106 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 163
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 164 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 217
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 40 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 99
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 100 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 157
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 158 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 211
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 46 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 105
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 106 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 163
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 164 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 217
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 38 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 97
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 98 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 155
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 156 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 209
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 46 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 105
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 106 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 163
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 164 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 217
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 45 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 104
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 105 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 162
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 163 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 216
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 42 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 101
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 102 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 159
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 160 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 213
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 49 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 108
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 109 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 166
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 46 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 105
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 106 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 163
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 164 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 217
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 221
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 44 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 103
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 104 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 161
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 162 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 215
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 45 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFA 104
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 105 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 162
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 163 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 216
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 50 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 109
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 110 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 167
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 168 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHERLAQLLLILSHIRHM 221
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L L DQV LL W E+L+ RS+ +L A
Sbjct: 42 LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPVKLLFA 101
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 102 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 159
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 160 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 213
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L DQV LL W E+L+ RS+ +L A
Sbjct: 51 LTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 110
Query: 245 PGVTVYRSSAHEA-GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 111 PNLLLDRNQGKXVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 168
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 169 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 222
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex
With Dna
Length = 98
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 44/80 (55%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXX 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I
Sbjct: 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 63
Query: 115 XXXXLNMGMKREAVQEERQR 134
L +GM +E V+ +R R
Sbjct: 64 FMKALKVGMLKEGVRLDRVR 83
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
+ D++L +++WAK +P F L DQV LL W E+L+ RS+ +L A
Sbjct: 51 LTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFA 110
Query: 245 PGVTVYRSSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
P + + R+ G+ IFD +L S+ R M + E CL++IIL N V S
Sbjct: 111 PNLLLDRNQGKCVEGMVEIFDMLLAT-SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS- 168
Query: 304 QVVEMLREK--VYTSLEEYTR----------VNHSEEPGRFAKLLLRLPSLRSI 345
++ L EK ++ L++ T + ++ R A+LLL L +R +
Sbjct: 169 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 222
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain From
Human Peroxisome Proliferator-Activated Receptor Delta
Length = 88
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +CGD+ASG HYGV++CEGCKGFF+RT+R L Y E R+C I
Sbjct: 10 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCE-RSCKIQKKNRNKCQYCRFQK 68
Query: 118 XLNMGMKREAVQ 129
L +GM A++
Sbjct: 69 CLALGMSHNAIR 80
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+ E+++ S R + I + R
Sbjct: 62 EIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDF 121
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AG+ F + E M E++++ E L I +F+ D ++ Q VE L+
Sbjct: 122 AKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYV 181
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L Y ++H + F ++L++L SLR++
Sbjct: 182 EALHAYVSIHHPHDRLMFPRMLMKLVSLRTL 212
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA+ IP F LP DQ LL + + EL + ++RS V+ ++ GV ++R G
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVR-G 151
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
G D ++ E S ++ +D + C+ + + GLK + VE L+ K+ L+
Sbjct: 152 FGEWIDSIV-EFSSNLQNXNIDISAFSCIAALAXVT-ERHGLKEPKRVEELQNKIVNCLK 209
Query: 319 EYTRVNHS--EEPGRFAKLLLRLPSLRSI 345
++ N+ P +KLL +LP LR++
Sbjct: 210 DHVTFNNGGLNRPNYLSKLLGKLPELRTL 238
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA+ IP F LP DQ LL + + EL + ++RS V+ ++ GV ++R G
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVR-G 151
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
G D ++ E S ++ +D + C+ + + GLK + VE L+ K+ L+
Sbjct: 152 FGEWIDSIV-EFSSNLQNXNIDISAFSCIAALAXVT-ERHGLKEPKRVEELQNKIVNCLK 209
Query: 319 EYTRVNHS--EEPGRFAKLLLRLPSLRSI 345
++ N+ P +KLL +LP LR++
Sbjct: 210 DHVTFNNGGLNRPNYLSKLLGKLPELRTL 238
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+ E+++ S R + I + R
Sbjct: 103 EIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDF 162
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
+AG+ F + E M E++++ E L I +F+ D ++ Q VE L+
Sbjct: 163 AKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYV 222
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L Y ++H + F ++L++L SLR++
Sbjct: 223 EALHAYVSIHHPHDRLMFPRMLMKLVSLRTL 253
>pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-KDG-IL 242
+C+ D+ +VDWA+ F L + DQ+ LL+ W+ELL+ +R + K+G IL
Sbjct: 45 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSIL 104
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVL--TELVSKMREMKMDKTELGCLRTIILFNPDVRGL 300
L G V ++ + VL ELV ++ +++D+ E CL+ IILF+ D++ L
Sbjct: 105 LVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFL 164
Query: 301 KSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+ +V+ +EK +L +YT ++ +F +LLL L +R++ +
Sbjct: 165 NNHILVKDAQEKANAALLDYTLCHYPHSGDKFQQLLLCLVEVRALSM 211
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
Length = 84
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C ID
Sbjct: 7 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRK 66
Query: 118 XLNMGMKREAVQEERQ 133
+GM + ++++R+
Sbjct: 67 CYEVGMMKGGIRKDRR 82
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 110 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 167
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 168 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 227
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 228 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 260
>pdb|1NYX|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
pdb|1NYX|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
Length = 276
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 94 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 151
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 152 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 211
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 212 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 244
>pdb|3S9S|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With A
Benzimidazole Partial Agonist
Length = 284
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 102 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 159
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 160 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 219
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 220 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 252
>pdb|2OM9|A Chain A, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|B Chain B, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|C Chain C, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|D Chain D, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|3SZ1|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
pdb|3SZ1|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
Length = 278
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 96 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 153
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 154 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 213
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 214 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 246
>pdb|4DK7|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
pdb|4DK7|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
Length = 247
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++VD+AK +P F L EDQ+ LL+A E+ + + R + I T +
Sbjct: 67 EIVDFAKQVPGFLQLGREDQIALLKASTIEIXLLETARRYNHETECITFLKDFTYSKDDF 126
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG+ F + E R + +D E L I +F+ D ++ VE L++
Sbjct: 127 HRAGLQVEFINPIFEFSRAXRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYV 186
Query: 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L YTR+ ++ RF + L +L SLR++
Sbjct: 187 EALLSYTRIKRPQDQLRFPRXLXKLVSLRTL 217
>pdb|2I4J|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4J|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4P|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4P|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4Z|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|2I4Z|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|3B3K|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3B3K|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3CDS|A Chain A, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3CDS|B Chain B, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3D6D|A Chain A, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3D6D|B Chain B, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3CDP|A Chain A, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|3CDP|B Chain B, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|2ZK0|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK0|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK1|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK1|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK2|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK2|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK3|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK3|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK5|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK5|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK6|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZK6|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZNO|A Chain A, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|2ZNO|B Chain B, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3HO0|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HO0|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3AN3|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN3|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN4|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3AN4|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3VJH|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJH|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJI|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
pdb|3VJI|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
Length = 286
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 105 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 162
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 163 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 222
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 223 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 255
>pdb|2VSR|A Chain A, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VSR|B Chain B, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VST|A Chain A, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VST|B Chain B, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VV0|A Chain A, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV0|B Chain B, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV1|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
pdb|2VV2|A Chain A, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV2|B Chain B, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV3|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV3|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV4|A Chain A, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 94 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 151
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 152 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 211
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 212 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 244
>pdb|1RDT|D Chain D, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
Length = 284
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 102 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 159
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 160 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 219
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 220 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 252
>pdb|3OSI|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSI|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSW|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
pdb|3OSW|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
Length = 285
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 104 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 161
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 162 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 221
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 222 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 254
>pdb|3ADS|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADS|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADT|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADT|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADU|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADU|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADV|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADV|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADW|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADW|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADX|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3ADX|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3R8I|A Chain A, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|3R8I|B Chain B, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|2YFE|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|2YFE|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|4A4V|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4V|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4E4K|A Chain A, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4K|B Chain B, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4Q|A Chain A, Crystal Structure Of Ppargamma With The Ligand Fs214
pdb|4E4Q|B Chain B, Crystal Structure Of Ppargamma With The Ligand Fs214
Length = 287
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 105 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 162
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 163 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 222
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 223 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 255
>pdb|3LMP|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3B1M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator Cerco-A
pdb|3V9T|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9V|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9Y|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|4F9M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
Length = 283
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 101 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 158
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 159 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 218
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 219 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 251
>pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV-KDG-IL 242
+C+ D+ +VDWA+ F L + DQ+ LL+ W+ELL+ +R + K+G IL
Sbjct: 46 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSIL 105
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVL--TELVSKMREMKMDKTELGCLRTIILFNPDVRGL 300
L G V ++ + VL ELV ++ +++D+ E CL+ IILF+ D++ L
Sbjct: 106 LVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFL 165
Query: 301 KSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347
+ +V+ +EK +L +YT ++ +F +LLL L +R++ +
Sbjct: 166 NNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSM 212
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 101 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 158
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 159 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 218
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 219 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 251
>pdb|1WM0|X Chain X, Ppargamma In Complex With A 2-Baba Compound
Length = 292
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 110 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 167
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 168 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 227
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 228 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 260
>pdb|3VN2|A Chain A, Crystal Structure Of Ppargamma Complexed With Telmisartan
Length = 285
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 103 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 160
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 161 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 220
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 221 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 253
>pdb|1ZEO|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|1ZEO|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|2P4Y|A Chain A, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|2P4Y|B Chain B, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|3TY0|A Chain A, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
pdb|3TY0|B Chain B, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
Length = 277
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 95 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 152
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 153 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 212
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 213 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 245
>pdb|3BC5|A Chain A, X-Ray Crystal Structure Of Human Ppar Gamma With
2-(5-(3-(2-
(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-2-Phenyl-
2h-1, 2,3-Triazol-4-Yl)acetic Acid
Length = 296
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 114 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 171
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 172 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 231
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 232 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 264
>pdb|2VV1|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
Length = 276
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 94 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 151
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 152 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 211
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 212 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 244
>pdb|3B0Q|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0Q|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0R|A Chain A, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
pdb|3B0R|B Chain B, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
Length = 274
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 93 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 150
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 151 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 210
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 211 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 243
>pdb|3CS8|A Chain A, Structural And Biochemical Basis For The Binding
Selectivity Of Pparg To Pgc-1a
Length = 275
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 94 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 151
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 152 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 211
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 212 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 244
>pdb|2Q59|B Chain B, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
pdb|2Q5P|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5P|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5S|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q5S|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q61|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q61|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q6R|A Chain A, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6R|B Chain B, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6S|A Chain A, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
pdb|2Q6S|B Chain B, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
Length = 274
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 92 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 149
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 150 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 209
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 210 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 242
>pdb|3PBA|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PBA|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PO9|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
pdb|3PO9|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
Length = 286
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 104 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 161
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 162 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 221
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 222 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 254
>pdb|3ET3|A Chain A, Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 292
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 110 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 167
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 168 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 227
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 228 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 260
>pdb|3R8A|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
pdb|3R8A|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
Length = 282
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 100 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 157
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 158 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 217
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 218 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 250
>pdb|2VV4|B Chain B, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 94 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 151
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 152 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 211
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 212 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 244
>pdb|4PRG|A Chain A, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|B Chain B, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|C Chain C, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|D Chain D, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|1PRG|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|1PRG|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2QMV|A Chain A, High Resolution Structure Of Peroxisone
Proliferation-Activated Receptor Gamma And
Characterisation Of Its Interaction With The Co-
Activator Transcriptional Intermediary Factor 2
Length = 270
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 89 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 146
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 147 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 206
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 207 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 239
>pdb|3PRG|A Chain A, Ligand Binding Domain Of Human Peroxisome Proliferator
Activated Receptor
Length = 278
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 96 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 153
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 154 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 213
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 214 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 246
>pdb|2ZVT|A Chain A, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZVT|B Chain B, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
Length = 286
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 105 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 162
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 163 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 222
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 223 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 255
>pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131
pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
pdb|3K8S|A Chain A, Crystal Structure Of Pparg In Complex With T2384
pdb|3K8S|B Chain B, Crystal Structure Of Pparg In Complex With T2384
pdb|3KMG|A Chain A, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
pdb|3KMG|D Chain D, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
Length = 272
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 90 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 147
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 148 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 207
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 208 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 240
>pdb|3CWD|A Chain A, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
pdb|3CWD|B Chain B, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
Length = 270
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 88 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 145
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 146 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 205
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 206 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 238
>pdb|2PRG|A Chain A, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2PRG|B Chain B, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2F4B|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2F4B|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2FVJ|A Chain A, A Novel Anti-adipogenic Partial Agonist Of Peroxisome
Proliferator- Activated Receptor-gamma (pparg) Recruits
Pparg-coactivator-1 Alpha (pgc1a) But Potentiates
Insulin Signaling In Vitro
pdb|2G0G|A Chain A, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0G|B Chain B, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0H|A Chain A, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2G0H|B Chain B, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2ATH|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2ATH|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2GTK|A Chain A, Structure-Based Design Of Indole Propionic Acids As Novel
Pparag Co-Agonists
pdb|2HWQ|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWQ|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2Q8S|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|2Q8S|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|3G9E|A Chain A, Aleglitaar. A New. Potent, And Balanced Dual PparaG
AGONIST For The Treatment Of Type Ii Diabetes
pdb|3IA6|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3IA6|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3FEJ|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
pdb|3GBK|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3GBK|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3NOA|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3NOA|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3QT0|A Chain A, Revealing A Steroid Receptor Ligand As A Unique Ppargamma
Agonist
Length = 271
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 89 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 146
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 147 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 206
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 207 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 239
>pdb|2HFP|A Chain A, Crystal Structure Of Ppar Gamma With N-Sulfonyl-2-Indole
Carboxamide Ligands
Length = 282
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 100 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 157
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 158 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 217
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 218 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 250
>pdb|1KNU|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|1KNU|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|2XKW|A Chain A, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|2XKW|B Chain B, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|3R5N|A Chain A, Crystal Structure Of Ppargammalbd Complexed With The
Agonist Magnolol
Length = 274
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 92 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 149
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 150 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 209
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 210 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 242
>pdb|3T03|A Chain A, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
pdb|3T03|B Chain B, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
Length = 284
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 102 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 159
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 160 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 219
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 220 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 252
>pdb|3U9Q|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With Decanoic
Acid And Pgc-1a Peptide
Length = 269
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 88 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 145
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 146 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 205
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 206 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 238
>pdb|2Q59|A Chain A, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
Length = 274
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 92 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 149
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 150 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 209
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 210 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 242
>pdb|3ET0|A Chain A, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
pdb|3ET0|B Chain B, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
Length = 292
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
++ ++AK IP F L L DQV LL+ G +E++ + S+ KDG+L++ G
Sbjct: 110 EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREF 167
Query: 255 HEA--GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
++ G F E K +++D ++L +I+ + D GL + + +E +++
Sbjct: 168 LKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDN 227
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE ++NH E FAKLL ++ LR I
Sbjct: 228 LLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 260
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 64.3 bits (155), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C ID
Sbjct: 4 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTID 49
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 64.3 bits (155), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C ID
Sbjct: 4 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTID 49
>pdb|2J4A|A Chain A, Human Thyroid Hormone Receptor Beta Ligand Binding Domain
In Complex With Kb131084
Length = 253
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 56 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L+ + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 116 ESETLTLSGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 174
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 175 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 223
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 64.3 bits (155), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C ID
Sbjct: 7 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTID 52
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 58 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 113
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 114 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 173
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA+LL RL LR+
Sbjct: 174 VLQKLCKIHQPENPQHFAELLGRLTELRTF 203
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 55 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 110
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 111 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 170
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA+LL RL LR+
Sbjct: 171 VLQKLCKIHQPENPQHFAELLGRLTELRTF 200
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 39/76 (51%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D ASG HYGV +CEGCK FFKR V +Y C+ CIID
Sbjct: 7 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 66
Query: 118 XLNMGMKREAVQEERQ 133
L GM EA + +++
Sbjct: 67 CLQAGMNLEARKTKKK 82
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 91 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 147
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 148 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 207
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 208 TILRALEFHLQANHPDAQQLFPKLLQKMADLRQL 241
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 55 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 110
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 111 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 170
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA+LL RL LR+
Sbjct: 171 VLQKLCKIHQPENPQHFAELLGRLTELRTF 200
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 101 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 157
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 158 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 217
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 218 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 251
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 86 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 142
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 143 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 202
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 203 TILRALEFHLQANHPDAQQLFPKLLQKMADLRQL 236
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 55 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 110
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 111 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 170
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA+LL RL LR+
Sbjct: 171 VLQKLCKIHQPENPQHFAELLGRLTELRTF 200
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 105 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 161
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 162 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 221
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 222 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 255
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 103 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 159
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 160 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 219
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 220 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 253
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L A +
Sbjct: 56 LVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPAGHADLLEERIR 111
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
++G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 112 KSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 171
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ ++ E P FA LL RL LR+
Sbjct: 172 VLQKLCKIYQPENPQHFACLLGRLTELRTF 201
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 85 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 141
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 142 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 201
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 202 TILRALEFHLQANHPDAQQLFPKLLQKMADLRQL 235
>pdb|1NUO|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 261
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 64 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLHAAVRYDP 123
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 124 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 182
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 183 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 231
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L A +
Sbjct: 56 LVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPAGHADLLEERIR 111
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
++G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 112 KSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 171
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ ++ E P FA LL RL LR+
Sbjct: 172 VLQKLCKIYQPENPQHFACLLGRLTELRTF 201
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 99 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 155
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 156 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 215
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 216 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 249
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 106 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 162
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 163 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 222
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 223 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 256
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 94 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 150
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 151 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 210
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 211 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 244
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 90 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 146
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 147 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 206
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 207 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 240
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
Length = 271
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 89 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 145
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 146 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 205
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 206 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 239
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 61 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 116
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 117 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 176
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 177 VLQKLCKIHQPENPQHFACLLGRLTELRTF 206
>pdb|1Q4X|A Chain A, Crystal Structure Of Human Thyroid Hormone Receptor Beta
Lbd In Complex With Specific Agonist Gc-24
Length = 253
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 56 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 116 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 174
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 175 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 223
>pdb|1R6G|A Chain A, Crystal Structure Of The Thyroid Hormone Receptor Beta
Ligand Binding Domain In Complex With A Beta Selective
Compound
Length = 259
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 62 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 121
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 122 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 180
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 181 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 229
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + + +
Sbjct: 59 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEARIR 114
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 115 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 174
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 175 VLQKLCKIHQPENPQHFACLLGRLTELRTF 204
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 63 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 122
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 123 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 181
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 182 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 230
>pdb|1XZX|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
pdb|1Y0X|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
Length = 281
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 84 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 143
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 144 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 202
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 203 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 251
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G + + +
Sbjct: 93 ELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANG-SGFVTRE 149
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 150 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 209
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 210 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 243
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 64 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 119
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 120 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 179
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 180 VLQKLCKIHQPENPQHFACLLGRLTELRTF 209
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXX 115
H+C +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRY 62
Query: 116 XXXLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 63 RKCLQAGMNLEA-----RKTKKKIKGIQQATAG 90
>pdb|1NQ0|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 66 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 125
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 126 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 184
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 185 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 233
>pdb|1NAX|A Chain A, Thyroid Receptor Beta1 In Complex With A Beta-Selective
Ligand
Length = 252
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 56 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 116 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 174
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 175 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 223
>pdb|1N46|A Chain A, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
pdb|1N46|B Chain B, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
Length = 258
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 61 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 120
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 121 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 179
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 180 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 228
>pdb|1NQ1|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 66 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 125
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 126 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 184
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 185 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 233
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 59 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 114
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 115 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 174
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 175 VLQKLCKIHQPENPQHFACLLGRLTELRTF 204
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 58 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 113
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 114 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 173
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 174 VLQKLCKIHQPENPQHFACLLGRLTELRTF 203
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 57 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 112
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 113 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 172
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 173 VLQKLCKIHQPENPQHFACLLGRLTELRTF 202
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 58 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 113
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 114 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 173
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 174 VLQKLCKIHQPENPQHFACLLGRLTELRTF 203
>pdb|1NQ2|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 264
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 67 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRTAVRYEP 126
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 127 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 185
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 186 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 234
>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
Thyromimetic Triac
Length = 263
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 66 VDLEAFSHFTKIITPAITRVVDFAKKLPMFXELPXEDQIILLKGCCMEIMSLRAAVRYDP 125
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 126 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 184
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 185 RPGLAXVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 233
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 64 VDLEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDP 123
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 124 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 182
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 183 RPGLAXVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 231
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 63 VDLEAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDP 122
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + +L + +D TE+ L+ ++L + D
Sbjct: 123 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSD 181
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 182 RPGLAXVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 230
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV++ K +P F TL EDQ+ LL+ E + RS + + L + +
Sbjct: 55 LVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFL----RSAEIFNKKLPSGHSDLLEERIR 110
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+G+ + + + E+KM + E L I++ +PD + +K ++ VE L+E +
Sbjct: 111 NSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD 170
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L++ +++ E P FA LL RL LR+
Sbjct: 171 VLQKLCKIHQPENPQHFACLLGRLTELRTF 200
>pdb|3D57|A Chain A, Tr Variant D355r
pdb|3D57|B Chain B, Tr Variant D355r
Length = 266
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 70 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 129
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + L + +D TE+ L+ ++L + D
Sbjct: 130 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-RLGMSLSSFNLDDTEVALLQAVLLMSSD 188
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 189 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 237
>pdb|2PIN|A Chain A, Thyroid Receptor Beta In Complex With Inhibitor
pdb|2PIN|B Chain B, Thyroid Receptor Beta In Complex With Inhibitor
Length = 253
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 1/169 (0%)
Query: 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
V+ + ++ K + ++VD+AK +P F LP EDQ++LL+ E++ + R
Sbjct: 56 VDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDP 115
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + L + V R G+G + D + L + +D TE+ L+ ++L + D
Sbjct: 116 ESETLTLNGEMAVTRGQLKNGGLGVVSDAIF-RLGMSLSSFNLDDTEVALLQAVLLMSSD 174
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
GL + +E ++ + E Y + KLL+++ LR I
Sbjct: 175 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 223
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 110
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXX 115
+C +CGDRA+G H+ +CEGCKGFF+R++++ + C +C I
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRL 66
Query: 116 XXXLNMGMKREAV--QEERQRTKE 137
+++GM +E + EE QR +E
Sbjct: 67 KRCVDIGMMKEFILTDEEVQRKRE 90
>pdb|3GZ9|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Delta (Ppard) In Complex With A Full Agonist
Length = 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F +L L DQV LL+ G +E + A + S+ KDG+L+A G + + +
Sbjct: 89 ELTEFAKSIPSFGSLFLNDQVTLLKYGVHEAIFAMLA--SLVNKDGLLVANG-SGFVTRE 145
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ E K +++D ++L I+ D GL + VE +++
Sbjct: 146 FLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQD 205
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +LE + + NH + F KLL ++ LR +
Sbjct: 206 TILRALEFHLQANHPDAQYLFPKLLQKMADLRQL 239
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +C D ASG HYGV +C CK FFKR V +Y C CIID
Sbjct: 28 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGDNRCIIDKIRRKNCPACRYR 87
Query: 117 XXLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 88 KCLQAGMNLEA-----RKTKKKIKGIQQATTG 114
>pdb|2NXX|E Chain E, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|F Chain F, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|G Chain G, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|H Chain H, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 248
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
+V++AK +P F L EDQ+ LL+A +E+++ + R D IL R S +
Sbjct: 68 IVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYN 127
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD---VRGLKSQQVVEMLREK 312
AG+G + +L M M++D E L I++F+ + G K +++ E+ E
Sbjct: 128 LAGMGETIEDLL-HFCRTMYSMRVDNAEYALLTAIVIFSERPALIEGWKVEKIQEIYLE- 185
Query: 313 VYTSLEEYTRVNHSEEPGR-FAKLLLRLPSLRSI 345
+L Y +PG FAKLL L LR++
Sbjct: 186 ---ALRAYVDNRRKPKPGTIFAKLLSVLTELRTL 216
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVR-KDLSYACREGRNCIIDXXXXXXXXXXX 114
H+C +C D ASG HYGV +C CK FFKR V + +Y C +CIID
Sbjct: 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACR 62
Query: 115 XXXXLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 63 YRKCLQAGMNLEA-----RKTKKKIKGIQQATAG 91
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXX 115
+C +CGDRA+G H+ +CEGCKGFF+R++++ + C +C I
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRL 66
Query: 116 XXXLNMGMKREAV--QEERQRTKE 137
+++GM +E + EE QR +E
Sbjct: 67 KRCVDIGMMKEFILTDEEVQRKRE 90
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
+++ V E++ +I + T + +V+++K +P F L EDQ+ LL+A +E+++ +
Sbjct: 109 EEENVAEERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMAR 168
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
R + D IL A R S AG+G + +L M MK+D E L I++
Sbjct: 169 RYDAETDSILFATNQPYTRESYTVAGMGDTVEDLL-RFCRHMCAMKVDNAEYALLTAIVI 227
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
F+ + L VE ++E +L+ Y V + +P FAKLL L LR++
Sbjct: 228 FS-ERPSLSEGWKVEKIQEIYIEALKAY--VENRRKPYATTIFAKLLSVLTELRTL 280
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 34/71 (47%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 117 XXLNMGMKREA 127
L GM EA
Sbjct: 61 KCLQAGMNLEA 71
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 34/71 (47%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 117 XXLNMGMKREA 127
L GM EA
Sbjct: 61 KCLQAGMNLEA 71
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 118 XLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 67 CLQAGMNLEA-----RKTKKKIKGIQQATAG 92
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 118 XLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 67 CLQAGMNLEA-----RKTKKKIKGIQQATAG 92
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA+ IP F L DQ LLL + + EL I ++RS + ++ G+ ++R G
Sbjct: 86 WAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR-G 144
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
G D +L + + +D CL ++L D GL+ + VE L+ ++ + L+
Sbjct: 145 FGDWIDNILA-FSRSLHSLGVDVPAFACLSALVLIT-DRHGLQDPRRVEELQNRIASCLK 202
Query: 319 EY-TRVNHSEEPGR-FAKLLLRLPSLRSI 345
E+ V +P ++LL +LP LR++
Sbjct: 203 EHMAAVAGDPQPASCLSRLLGKLPELRTL 231
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA+ IP F L DQ LLL + + EL I ++RS + ++ G+ ++R G
Sbjct: 71 WAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR-G 129
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
G D +L + + +D CL ++L D GL+ + VE L+ ++ + L+
Sbjct: 130 FGDWIDSILA-FSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLK 187
Query: 319 EYTRVNHSE-EPGR-FAKLLLRLPSLRSI 345
E+ E +P ++LL +LP LR++
Sbjct: 188 EHVAAVAGEPQPASCLSRLLGKLPELRTL 216
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 5/149 (3%)
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
WA+ IP F L DQ LLL + + EL I ++RS + ++ G+ ++R G
Sbjct: 95 WAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR-G 153
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
G D +L + + +D CL ++L D GL+ + VE L+ ++ + L+
Sbjct: 154 FGDWIDSILA-FSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLK 211
Query: 319 EYTRVNHSE-EPGR-FAKLLLRLPSLRSI 345
E+ E +P ++LL +LP LR++
Sbjct: 212 EHVAAVAGEPQPASCLSRLLGKLPELRTL 240
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
+ +C ICGD ASG HYGV +C CK FFKR + +Y C +CI+D
Sbjct: 2 QKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVD 50
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 33/70 (47%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 60
Query: 118 XLNMGMKREA 127
L GM EA
Sbjct: 61 CLQAGMNLEA 70
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXX 116
LC +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 31 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 90
Query: 117 XXLNMGMKREAVQEERQRTKERDSNEVESTSG 148
L GM EA ++TK++ ++T+G
Sbjct: 91 KCLQAGMNLEA-----RKTKKKIKGIQQATTG 117
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 36/75 (48%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDXXXXXXXXXXXXXX 117
C +C D ASG HYGV +C CK FFKR V +Y C +CIID
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 118 XLNMGMKREAVQEER 132
L GM EA + ++
Sbjct: 67 CLQAGMNLEARKTKK 81
>pdb|1R20|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|3IXP|D Chain D, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 265
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
+V++AK +P F+ + DQ+ LL+A +E+++ + R + D +L A R +
Sbjct: 83 IVEFAKGLPGFSKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYR 142
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+AG+ + + +L M M MD L I++F+ D GL+ +VE ++
Sbjct: 143 KAGMAYVIEDLL-HFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPSLVEEIQRYYLN 200
Query: 316 SLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
+L Y +S P F K+L L +R++
Sbjct: 201 TLRVYILNQNSASPRSAVIFGKILGILTEIRTL 233
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W LL + S RS
Sbjct: 73 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHT 132
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 133 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 191
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 192 PKDGLKSQAAFEEMR 206
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W LL + S RS
Sbjct: 39 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHT 98
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 99 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 157
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 158 PKDGLKSQAAFEEMR 172
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W LL + S RS
Sbjct: 54 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHT 113
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 114 NSQFLYFAPDLVFNEEKMHQSAMYELC-QGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 172
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 173 PKDGLKSQAAFEEMR 187
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 105 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 161
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 162 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 221
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 222 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 255
>pdb|1R1K|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|2R40|D Chain D, Crystal Structure Of 20e Bound Ecr/usp
Length = 266
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
+V++AK +P F + DQ+ LL+A +E+++ + R + D +L A R +
Sbjct: 84 IVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYR 143
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
+AG+ + + +L M M MD L I++F+ D GL+ +VE ++
Sbjct: 144 KAGMAYVIEDLL-HFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLN 201
Query: 316 SLEEYTRVNHSEEPG---RFAKLLLRLPSLRSI 345
+L Y +S P F K+L L +R++
Sbjct: 202 TLRVYILNQNSASPRCAVIFGKILGILTEIRTL 234
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 91 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 147
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 148 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 207
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 208 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 241
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 95 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 151
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 152 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 211
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 212 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 245
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
Length = 105
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 25/46 (54%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIID 103
C ICGD ASG HYG +C CK FFKR Y C +C ID
Sbjct: 10 CLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTID 55
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 103 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 159
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 160 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 219
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 220 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 253
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 109 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 165
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 166 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 225
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 226 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 259
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 106 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 162
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 163 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 222
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 223 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 256
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 85 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 141
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 142 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 201
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 202 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 235
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 88 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 144
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 145 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 204
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 205 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 238
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 88 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 144
Query: 255 HEAGVGGIFDRVLT---ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 145 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 204
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 205 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 238
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+L ++AK IP F L L DQV LL+ G E + A S S+ KDG+L+A G + +
Sbjct: 87 ELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLS--SVMNKDGMLVAYG-NGFITRE 143
Query: 255 HEAGVGGIFDRVL---TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ F ++ + K +++D +++ I+ D GL + +E ++E
Sbjct: 144 FLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQE 203
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ L + + NH ++ F KLL ++ LR +
Sbjct: 204 GIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 237
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL---APGVTVYRS 252
+V++AK I F L DQ+LLL++G E+++ + + +L G+ ++++
Sbjct: 73 VVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKA 132
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
+ V FD + +++ + E+ + +L +PD L + V+ L+EK
Sbjct: 133 LGSDDLVNEAFD-----FAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEK 187
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+Y +L+ + NH ++ AKL+ ++P++ ++
Sbjct: 188 IYFALQHVIQKNHLDDET-LAKLIAKIPTITAV 219
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L EDQ+ LL++ E+++ S++S S++D + + G ++
Sbjct: 117 KVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLR-SNQSFSLED-MSWSCGGPDFKYCI 174
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
++ G +L LV ++++K+ + E L I L +PD G++ +E L++
Sbjct: 175 NDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQD 234
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ L+ Y R+ H +AK++ +L LRS+
Sbjct: 235 RLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSL 268
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W LL + S RS
Sbjct: 34 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHT 93
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 94 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 152
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 153 PKDGLKSQAAFEEMR 167
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W LL + S RS
Sbjct: 35 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHT 94
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 95 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 153
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 154 PKDGLKSQAAFEEMR 168
>pdb|1ILG|A Chain A, Crystal Structure Of Apo Human Pregnane X Receptor Ligand
Binding Domain
pdb|1ILH|A Chain A, Crystal Structure Of Human Pregnane X Receptor Ligand
Binding Domain Bound To Sr12813
pdb|1M13|A Chain A, Crystal Structure Of The Human Pregane X Receptor Ligand
Binding Domain In Complex With Hyperforin, A Constituent
Of St. John's Wort
pdb|1NRL|A Chain A, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|1NRL|B Chain B, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|2QNV|A Chain A, Crystal Structure Of The Pregnane X Receptor Bound To
Colupulone
pdb|3R8D|A Chain A, Activation Of The Human Nuclear Xenobiotic Receptor Pxr By
The Reverse Transcriptase-Targeted Anti-Hiv Drug
Pnu-142721
Length = 316
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
++ +AK I +F LP+EDQ+ LL+ EL F + + + G R S
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFELCQLRF-NTVFNAETGTW-----ECGRLSYC 189
Query: 256 EAGVGGIFDRVLTELVSK----MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
G F ++L E + K ++++++ + E ++ I LF+PD G+ +VV+ L+E
Sbjct: 190 LEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQE 249
Query: 312 KVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
+ +L+ Y N + R F K++ L LRSI
Sbjct: 250 QFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSI 285
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 83/154 (53%), Gaps = 5/154 (3%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L EDQ+ LL++ E+++ S++S S++D + + G ++
Sbjct: 115 KVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLR-SNQSFSLED-MSWSCGGPDFKYCI 172
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
++ G +L LV ++++K+ + E L I L +PD G++ +E L++
Sbjct: 173 NDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQD 232
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ L+ Y R+ H +AK++ +L LRS+
Sbjct: 233 RLCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSL 266
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL---APGVTVYRS 252
+V++AK I F L DQ+LLL++G E+++ + + +L G+ ++++
Sbjct: 73 VVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKA 132
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
+ V FD + +++ + E+ + +L +PD L + V+ L+EK
Sbjct: 133 LGSDDLVNEAFD-----FAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEK 187
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+Y +L+ + NH ++ AKL+ ++P++ ++
Sbjct: 188 IYFALQHVIQKNHLDDET-LAKLIAKIPTITAV 219
>pdb|1SKX|A Chain A, Structural Disorder In The Complex Of Human Pxr And The
Macrolide Antibiotic Rifampicin
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
++ +AK I +F LP+EDQ+ LL+ EL F+ + + G R S
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFN-TVFNAETGTW-----ECGRLSYC 189
Query: 256 EAGVGGIFDRVLTELVSK----MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
G F ++L E + K ++++++ + E ++ I LF+PD G+ +VV+ L+E
Sbjct: 190 LEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQE 249
Query: 312 KVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
+ +L+ Y N + R F K++ L LRSI
Sbjct: 250 QFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSI 285
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL---APGVTVYRS 252
+V++AK I F L DQ+LLL++G E+++ + + +L G+ ++++
Sbjct: 66 VVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKA 125
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
+ V FD + +++ + E+ + +L +PD L + V+ L+EK
Sbjct: 126 LGSDDLVNEAFD-----FAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEK 180
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+Y +L+ + NH ++ AKL+ ++P++ ++
Sbjct: 181 IYFALQHVIQKNHLDDET-LAKLIAKIPTITAV 212
>pdb|3CTB|A Chain A, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3CTB|B Chain B, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3HVL|A Chain A, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
pdb|3HVL|B Chain B, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
Length = 344
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
++ +AK I +F LP+EDQ+ LL+ EL F+ + + G R S
Sbjct: 136 IISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFN-TVFNAETGTW-----ECGRLSYC 189
Query: 256 EAGVGGIFDRVLTELVSK----MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
G F ++L E + K ++++++ + E ++ I LF+PD G+ +VV+ L+E
Sbjct: 190 LEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQE 249
Query: 312 KVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
+ +L+ Y N + R F K++ L LRSI
Sbjct: 250 QFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSI 285
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L++ + RS G LL AP +
Sbjct: 53 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMVFALGWRSYRQASGNLLCFAPDLI 112
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + ++++ +++ E C++T++L + + GLKSQ++
Sbjct: 113 I---NEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQEL 169
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 170 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDV 212
>pdb|2O9I|A Chain A, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
pdb|2O9I|B Chain B, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
Length = 293
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNEL----LIASFSHRSISVKDGILLAPGVTVYR 251
++ +AK I +F LP+EDQ+ LL+ EL F+ + + + G L
Sbjct: 113 IISFAKVISYFRDLPIEDQISLLKGAAFELSQLRFNTVFNAETGTWECGRL--------- 163
Query: 252 SSAHEAGVGGIFDRVLTELVSK----MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVE 307
S E GG F ++L E + K ++++++ + E ++ I LF+PD G+ +VV+
Sbjct: 164 SYCLEDTAGG-FQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVD 222
Query: 308 MLREKVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
L+E+ +L+ Y N + R F K++ L LRSI
Sbjct: 223 QLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSI 262
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 49 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLI 108
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + G++D+ + + S++ +++ E C++T++L + + GLKSQ++
Sbjct: 109 I---NEQRMTLPGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQEL 165
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 166 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 208
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 51 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLI 110
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + G++D+ + + S++ +++ E C++T++L + + GLKSQ++
Sbjct: 111 I---NEQRMTLPGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQEL 167
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 168 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 210
>pdb|1XV9|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 246
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 182 ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI 241
T+ + Q++ + K +P F +LP+EDQ+ LL+ E+ +
Sbjct: 56 VTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF 115
Query: 242 LLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK 301
L P A G F +L +R++++ + E L + LF+PD G+
Sbjct: 116 LCGPLRYTIEDGA-RVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVT 174
Query: 302 SQQVVEMLREKVYTSLEEYTRVNHSEEPGRF--AKLLLRLPSLRSI 345
+ ++ L+E++ +L+ Y + RF AKLL L LRSI
Sbjct: 175 QRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSI 220
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W L + S RS
Sbjct: 54 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHT 113
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 114 NSQFLYFAPDLVFNEEKMHQSAMYELC-QGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 172
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 173 PKDGLKSQAAFEEMR 187
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W L + S RS
Sbjct: 32 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHT 91
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 92 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 150
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 151 PKDGLKSQAAFEEMR 165
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L++ + RS G LL AP +
Sbjct: 53 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLI 112
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + ++++ +++ E C++T++L + + GLKSQ++
Sbjct: 113 I---NEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQEL 169
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 170 FDEIR---MTYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDV 212
>pdb|3F5C|B Chain B, Structure Of Dax-1:lrh-1 Complex
pdb|3F5C|C Chain C, Structure Of Dax-1:lrh-1 Complex
Length = 268
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
P Q ++ + +C+A L + + + K++P F LPL+ Q++L+R+ W LL+
Sbjct: 38 PGVQRLITLKDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLEL 97
Query: 231 SHRSISVK---------------------DGILLAPGVTVYRSSAHEAGVGGIFD----R 265
+ + + +G A + A G + +
Sbjct: 98 AQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQ 157
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+ K + +D E L+ +LFNPD+ GL+ + +E L+ + L E+ R+
Sbjct: 158 AIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQ 217
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E R A+L L LR I
Sbjct: 218 REYQIRSAELNSALFLLRFI 237
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS G LL AP +
Sbjct: 53 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQASGNLLCFAPDLI 112
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + ++++ +++ E C++T++L + + GLKSQ++
Sbjct: 113 I---NEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQEL 169
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 170 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDV 212
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 50 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 109
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 110 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 168
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 169 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 210
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 50 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 109
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 110 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 168
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 169 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 210
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 46 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 105
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 106 LYFAPDLILNEQRMKESSFYSL-CLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 164
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 165 LRSQTQFEEMR 175
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 41 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 100
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 101 LYFAPDLILNEQRMKESSFYSLC-LTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 159
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 160 LRSQTQFEEMR 170
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 42 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 101
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 102 LYFAPDLILNEQRMKESSFYSLC-LTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 160
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 161 LRSQTQFEEMR 171
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 47 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 106
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 107 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 165
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 166 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 207
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 39 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 98
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 99 LYFAPDLILNEQRMKESSFYSLC-LTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 157
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 158 LRSQTQFEEMR 168
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 46 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 105
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 106 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 164
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 165 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 206
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 47 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 106
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 107 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 165
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 166 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 207
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 59 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 118
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 119 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 177
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 178 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 219
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 46 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLI 105
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + S++ +++ E C++T++L + + GLKSQ +
Sbjct: 106 I---NEQRMTLPDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQAL 162
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 163 FDAIR---MTYIKELGKAIVKREGNSSQNSQRFYQLTKLLDSMHEV 205
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 56 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 115
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 116 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 174
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 175 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 216
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 41 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 100
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 101 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 159
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 160 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 201
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 46 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 105
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 106 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 164
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 165 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 206
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 53 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 112
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 113 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 171
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 172 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 213
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 13/193 (6%)
Query: 165 VDMKQEPADQDIVNEQQATNICKATDKQLFQLV--------DWAKHIPHFTTLPLEDQVL 216
VD +P+ D + ++ + +Q +QL+ +A+ IP + L EDQ L
Sbjct: 24 VDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQEL 83
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMRE 276
L ++ EL + ++R+ ++ G ++R+ + + D + E +
Sbjct: 84 LFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSFGEWLND--IMEFSRSLHN 141
Query: 277 MKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR--FAK 334
+++D + CL + L + GL+ + VE L+ K+ SL ++ N + + F++
Sbjct: 142 LEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSR 200
Query: 335 LLLRLPSLRSIEV 347
LL +LP LRS+ V
Sbjct: 201 LLGKLPELRSLSV 213
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 43 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 102
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 103 LYFAPDLILNEQRMKESSFYSLC-LTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 161
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 162 LRSQTQFEEMR 172
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 41 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 100
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 101 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 159
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 160 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 201
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 44 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 103
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 104 LYFAPDLILNEQRMKESSFYSL-CLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 162
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 163 LRSQTQFEEMR 173
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 72 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLI 131
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + S++ +++ E C++T++L + + GLKSQ++
Sbjct: 132 I---NEQRMTLPDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQEL 188
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 189 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 231
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK 238
E + + + KQ+ Q+V WAK +P F LPLEDQ+ L++ W L + S RS
Sbjct: 35 ENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHT 94
Query: 239 DG--ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ + AP + H++ + + + + ++ + +++ E ++ ++L +
Sbjct: 95 NSQFLYFAPDLVFNEEKMHQSAMYEL-CQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTI 153
Query: 297 VR-GLKSQQVVEMLR 310
+ GLKSQ E +R
Sbjct: 154 PKDGLKSQAAFEEMR 168
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 76 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 133
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ G ++ L+ ++++ + + E L I + +PD G++ ++E +++
Sbjct: 134 SDVTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 193
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 194 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 229
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 76 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 133
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ G ++ L+ ++++ + + E L I + +PD G++ ++E +++
Sbjct: 134 SDVTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 193
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 194 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 229
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 36 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 95
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRG 299
L AP + + E+ + + ++ + ++++ + E C++ ++L N + G
Sbjct: 96 LYFAPDLILNEQRMKESSFYSL-CLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 154
Query: 300 LKSQQVVEMLR 310
L+SQ E +R
Sbjct: 155 LRSQTQFEEMR 165
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 40 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 99
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 100 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 158
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 159 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 200
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 39 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 98
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 99 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 157
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 158 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 199
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 39 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 98
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 99 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 157
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 158 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 199
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 39 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 98
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 99 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 157
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 158 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 199
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 39 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 98
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 99 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 157
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 158 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 199
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 39 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 98
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 99 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 157
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 158 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 199
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +L AP +
Sbjct: 41 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDL 100
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 101 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 159
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 160 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 201
>pdb|1N83|A Chain A, Crystal Structure Of The Complex Between The Orphan
Nuclear Hormone Receptor Ror(Alpha)-Lbd And Cholesterol
pdb|1S0X|A Chain A, Crystal Structure Of The Human Roralpha Ligand Binding
Domain In Complex With Cholesterol Sulfate At 2.2a
Length = 270
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI-----ASFSHRSISVKDGILLAPGVTVY 250
+V++AK I F L DQ++LL+AG E++ A S + DG +P V+
Sbjct: 81 VVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPD--VF 138
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
+S E + +F E + M + + E+ +L + D L+ + +E L+
Sbjct: 139 KSLGCEDFISFVF-----EFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQ 193
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+K+ +L+ + NH E+ G KL+ ++ +LR++
Sbjct: 194 QKIQLALQHVLQKNHRED-GILTKLICKVSTLRAL 227
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 47 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLI 106
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + S++ +++ E C++T++L + + GLKSQ++
Sbjct: 107 I---NEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQEL 163
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 164 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 206
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS LL AP +
Sbjct: 49 RQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLI 108
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + + S++ +++ E C++T++L + + GLKSQ++
Sbjct: 109 I---NEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQEL 165
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 166 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 208
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 70 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 127
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 128 SDVTKAGQSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 187
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 188 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 223
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L +DQ++LL++ E+++ S++S ++ D + G Y+
Sbjct: 84 KVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR-SNQSFTMDD-MSWDCGSQDYKYDV 141
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ G ++ L+ ++++ + + E L I + +PD G++ ++VE +++
Sbjct: 142 TDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQD 201
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 202 RLSNTLQTYIRCRHP-PPGSHQLYAKMIQKLADLRSL 237
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 72 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTM-DDMSWTCGNQDYKYRV 129
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 130 SDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 189
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 190 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 225
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK +P F L L+DQ+ LL+ W L+ S RS +G +L AP +
Sbjct: 43 RQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLV 102
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + ++ S+ +++ E C++ ++L + + GLKSQ V
Sbjct: 103 I---NEERMQLPYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAV 159
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 160 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEM 202
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 76 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 133
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 134 SDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 193
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 194 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 229
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK +P F L L+DQ+ LL+ W L+ S RS +G +L AP +
Sbjct: 41 RQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLV 100
Query: 249 VYRSSAHEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQV 305
+ + + ++D+ + ++ S+ +++ E C++ ++L + + GLKSQ V
Sbjct: 101 I---NEERMQLPYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAV 157
Query: 306 VEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
+ +R T ++E + N S+ RF +L L S+ +
Sbjct: 158 FDEIR---MTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEM 200
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 93 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 150
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 151 SDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 210
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 211 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 246
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L +DQ++LL++ E+++ S++S ++ D + G Y+
Sbjct: 78 KVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR-SNQSFTM-DDMSWDCGSQDYKYDV 135
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ G ++ L+ ++++ + + E L I + +PD G++ ++VE +++
Sbjct: 136 TDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQD 195
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 196 RLSNTLQTYIRCRHP-PPGSHQLYAKMIQKLADLRSL 231
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
+++ +AK IP F L +DQ++LL++ E+++ S++S ++ D + G Y+
Sbjct: 74 KVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR-SNQSFTM-DDMSWDCGSQDYKYDV 131
Query: 255 HEAGVGGIFDRVLTELVS---KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ G ++ L+ ++++ + + E L I + +PD G++ ++VE +++
Sbjct: 132 TDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQD 191
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 192 RLSNTLQTYIRCRHP-PPGSHQLYAKMIQKLADLRSL 227
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 71 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 128
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 129 SDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 188
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 189 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 224
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--- 251
+++ +AK IP F L EDQ++LL++ E+++ S+ S ++ D + G Y+
Sbjct: 70 KVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR-SNESFTMDD-MSWTCGNQDYKYRV 127
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
S +AG L + ++++ + + E L I + +PD G++ ++E +++
Sbjct: 128 SDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQD 187
Query: 312 KVYTSLEEYTRVNHSEEPGR---FAKLLLRLPSLRSI 345
++ +L+ Y R H PG +AK++ +L LRS+
Sbjct: 188 RLSNTLQTYIRCRHP-PPGSHLLYAKMIQKLADLRSL 223
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 84/174 (48%), Gaps = 17/174 (9%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+++ + +KQL +V WAK +P F L L+DQ+ L++ W L+ + RS +G +
Sbjct: 37 SSLNRLAEKQLVSVVKWAKALPGFRNLHLDDQMTLIQYSWMGLMAFAMGWRSYKHTNGQM 96
Query: 243 L--APGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L AP + ++ ++D + + ++ + +++ + E C++ ++L + +
Sbjct: 97 LYFAPDLIFNEQRMQQS---AMYDLCQGMQQISQEFVRLQVTQEEFLCMKALLLLSTVPK 153
Query: 299 -GLKSQQVVEMLREKVYTSLEEYTRV------NHSEEPGRFAKLLLRLPSLRSI 345
GLKSQ + +R ++E R N ++ RF +L L S+ +
Sbjct: 154 EGLKSQASFDEMR---MNYIKELNRAIAKKENNSAQNWQRFYQLTKLLDSMHDL 204
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+++ + KQ+ +V WAK +P F L L+DQ+ L++ W L+ S RS +G +
Sbjct: 33 SSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQM 92
Query: 243 L--APGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L AP + ++ ++D + + ++ + +++ E C++ ++L + +
Sbjct: 93 LYFAPDLIFNEERMQQS---AMYDLCQGMRQISQEFVRLQVTYEEFLCMKVLLLLSTVPK 149
Query: 299 -GLKSQQVVEMLREKVYTSLEEY---TRVNHSEEPGRFAKLLLRLPSLRSI 345
GLKSQ + +R L N S+ RF +L L S+ +
Sbjct: 150 DGLKSQASFDEMRMNYIKELRRAIARNENNSSQNWQRFYQLTKLLDSMHDL 200
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
Q++ + K +P F +L +EDQ+ LL+ E+L S + + P +
Sbjct: 79 QIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAV 138
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG F + ++ + + + E + LF+PD G+ ++ ++ L+E++
Sbjct: 139 H-AGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMA 197
Query: 315 TSLEEYTRVNHSEEPGRF--AKLLLRLPSLRSI 345
L + S RF AKL+ L LRSI
Sbjct: 198 LILNNHIMEQQSRLQSRFLYAKLMGLLADLRSI 230
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+++ + KQ+ +V WAK +P F L L+DQ+ L++ W L+ S RS +G +
Sbjct: 33 SSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQM 92
Query: 243 L--APGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVR 298
L AP + ++ ++D + + ++ + +++ E C++ ++L + +
Sbjct: 93 LYFAPDLIFNEERMQQS---AMYDLCQGMRQISQEFVRLQVTYEEFLCMKVLLLLSTVPK 149
Query: 299 -GLKSQQVVEMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
GLKSQ + +R L N S+ RF +L L S+ +
Sbjct: 150 DGLKSQASFDEMRMNYIKELRRAIAKKENNSSQNWQRFYQLTKLLDSMHDL 200
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
Q++ + K +P F +L +EDQ+ LL+ E+L S + + P +
Sbjct: 65 QIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAV 124
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
H AG F + ++ + + + E + LF+PD G+ ++ ++ L+E++
Sbjct: 125 H-AGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMA 183
Query: 315 TSLEEYTRVNHSEEPGRF--AKLLLRLPSLRSI 345
L + S RF AKL+ L LRSI
Sbjct: 184 LILNNHIMEQQSRLQSRFLYAKLMGLLADLRSI 216
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVT 248
+Q+ V WAK +P F L L+DQ+ LL+ W L+ S RS +G +L AP +
Sbjct: 41 RQMISAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYQHTNGNMLYFAPDLI 100
Query: 249 -----VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKS 302
+ +SS +E G ++ E V +++ E C++ ++L + + GLKS
Sbjct: 101 FNEERMQQSSMYELCKG--MHKISLEFV----RLQVSYEEYLCMKVLLLLSTVPKDGLKS 154
Query: 303 QQVVEMLR 310
Q + +R
Sbjct: 155 QAAFDEIR 162
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ L++ + RS + + +L AP +
Sbjct: 46 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDL 105
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 106 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 164
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 165 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 206
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGV 247
++QL +V WAK +P F L ++DQ+ +++ L++ + RS + + +L AP +
Sbjct: 38 ERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDL 97
Query: 248 TVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVV 306
H++ + R + L + +++ E C++ ++LF+ V GLK+Q+
Sbjct: 98 VFNEYRMHKSRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFF 156
Query: 307 EMLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ LR L+ R N + RF +L L S++ I
Sbjct: 157 DELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 198
>pdb|3L0L|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0L|B Chain B, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
Length = 248
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP----GVTVYR 251
+V++AK + F L DQ++LL+AG E+++ R+ + + + G+ ++R
Sbjct: 72 VVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMC-RAYNADNRTVFFEGKYGGMELFR 130
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ + IFD + + + E+ ++L N GL+ ++ VE L+
Sbjct: 131 ALGCSELISSIFD-----FSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQY 185
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLP---SLRSI 345
+ + + H + +L +LP LRS+
Sbjct: 186 NLELAFHHHLCKTHRQ------SILAKLPPKGKLRSL 216
>pdb|3KYT|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0J|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3B0W|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
pdb|3B0W|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
Length = 243
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP----GVTVYR 251
+V++AK + F L DQ++LL+AG E+++ R+ + + + G+ ++R
Sbjct: 67 VVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMC-RAYNADNRTVFFEGKYGGMELFR 125
Query: 252 SSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE 311
+ + IFD + + + E+ ++L N GL+ ++ VE L+
Sbjct: 126 ALGCSELISSIFD-----FSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQY 180
Query: 312 KVYTSLEEYTRVNHSEEPGRFAKLLLRLP---SLRSI 345
+ + + H + +L +LP LRS+
Sbjct: 181 NLELAFHHHLCKTHRQ------SILAKLPPKGKLRSL 211
>pdb|2LZE|A Chain A, Ligase 10c
Length = 87
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)
Query: 44 PYP-PNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNC 100
PYP P P G KH+C+ICG+ A +K T DL+Y R+ +NC
Sbjct: 6 PYPDPLEPR-GGKHICAICGNNAED--------------YKHT-DMDLTYTDRDYKNC 47
>pdb|3UP0|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP0|B Chain B, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP3|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Cholestenoic Acid
Length = 243
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
NE+ +I D + + V AK +P F L + + LL+ G E+L
Sbjct: 39 NEKSPADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEML 87
>pdb|3ZF7|OO Chain o, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 93
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 54 SKHLCSICGDRA-SGKHYGVYSCEGC 78
+KH CS CG A K G++ C+GC
Sbjct: 35 AKHFCSFCGKFAFRRKAVGIWRCDGC 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,647,924
Number of Sequences: 62578
Number of extensions: 303981
Number of successful extensions: 1306
Number of sequences better than 100.0: 370
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 378
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)