BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3092
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/340 (69%), Positives = 267/340 (78%), Gaps = 14/340 (4%)
Query: 14 SGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPN------HPLCGSKHLCSICGDRASG 67
S G M S G HS + + GS +SP P+ H +KH+C+ICGDRASG
Sbjct: 69 SPGPQQMHSPGM--HSPTSSMGSPPMLCLSPTGPSPSPGLPHSSLHTKHICAICGDRASG 126
Query: 68 KHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127
KHYGVYSCEGCKGFFKRTVRKDL+YACR+ +NC+IDKRQRNRCQYCRY KCL+MGMKREA
Sbjct: 127 KHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREA 186
Query: 128 VQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ--ATNI 185
VQEERQR KE+ EVESTSG +MPVE+ILEAE VD P ++ Q+ TNI
Sbjct: 187 VQEERQRVKEKGDGEVESTSGANNDMPVEQILEAELAVD----PKIDTYIDAQKDPVTNI 242
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP 245
C+A DKQLF LV+WAK IPHFT LPLEDQV+LLRAGWNELLIA FSHRSI KDGILLA
Sbjct: 243 CQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLAT 302
Query: 246 GVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQV 305
G+ V+RSSAH+AGVG IFDRVLTELV+KMREMKMDKTELGCLR ++LFNPD +GL + Q
Sbjct: 303 GLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQE 362
Query: 306 VEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLEEYT+ + EEPGRFAKLLLRLP+LRSI
Sbjct: 363 VEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSI 402
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/372 (64%), Positives = 275/372 (73%), Gaps = 31/372 (8%)
Query: 1 MKPDTATL--------LVNFNSGGANSMSSFG--SNNHSSSHNNG--SSNSSIISP---- 44
+KPD ++L F GG SM+S S H+ G S SS+ SP
Sbjct: 35 IKPDISSLTSPTSTHGYYGFGPGGMPSMASSTQPSPGPQQMHSPGMHSPTSSMGSPPMLC 94
Query: 45 ---------YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACR 95
H +KH+C+ICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACR
Sbjct: 95 LSPSGPSPSPGLPHSSLHTKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACR 154
Query: 96 EGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPV 155
+ +NC+IDKRQRNRCQYCRY KCL+MGMKREAVQEERQR KE+ EVESTSG +MPV
Sbjct: 155 DDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQEERQRVKEKGDGEVESTSGANNDMPV 214
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLED 213
E+ILEAE VD P ++ Q+ TNIC+A DKQLF LV+WAK IPHFT LPLED
Sbjct: 215 EQILEAELAVD----PKIDTYIDAQKDPVTNICQAADKQLFTLVEWAKRIPHFTELPLED 270
Query: 214 QVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
QV+LLRAGWNELLIA FSHRSI KDGILLA G+ V+RSSAH+AGVG IFDRVLTELV+K
Sbjct: 271 QVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAK 330
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR+MKMDKTELGCLR ++LFNPD +GL + Q VE LREKVY SLEEYT+ + EEPGRFA
Sbjct: 331 MRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFA 390
Query: 334 KLLLRLPSLRSI 345
KLLLRLP+LRSI
Sbjct: 391 KLLLRLPALRSI 402
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 462 bits (1189), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/355 (65%), Positives = 268/355 (75%), Gaps = 26/355 (7%)
Query: 16 GANSMSSFGSNNHSS------SHNNGSSNSSIISP------------YPPNHPLCGSKHL 57
G +SM+S G S SH N S+S I P P PL +KH+
Sbjct: 43 GPHSMASPGVGYGPSISPQLNSHMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHI 102
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQK
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQK 162
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE------- 170
CL MGMKREAVQEERQR KER NEVESTS +MPVE+ILEAE V+ K E
Sbjct: 163 CLAMGMKREAVQEERQRAKERSENEVESTSSANEDMPVEKILEAELAVEPKTETYIETNV 222
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
P + N+ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASF
Sbjct: 223 PMPSNSPNDP-VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 281
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
SHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I
Sbjct: 282 SHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 341
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 342 VLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 396
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/305 (71%), Positives = 250/305 (81%), Gaps = 5/305 (1%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 130 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 189
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQ ++ER NE ESTSG +MPVERILEAE
Sbjct: 190 RQRNRCQYCRYQKCLAMGMKREAVQEERQGSRERSENEAESTSGGSEDMPVERILEAELA 249
Query: 165 VDMKQEPADQDIVNEQQ----ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
V+ K E A D+ E TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRA
Sbjct: 250 VEPKTE-AYSDVNTESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRA 308
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MD
Sbjct: 309 GWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMD 368
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
K+ELGCLR I+LFNPD +GL S VE LREKVY +LE YT+ + E+PGRFAKLLLRLP
Sbjct: 369 KSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLP 428
Query: 341 SLRSI 345
+LRSI
Sbjct: 429 ALRSI 433
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/314 (70%), Positives = 254/314 (80%), Gaps = 7/314 (2%)
Query: 39 SSIISP----YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYAC 94
SS+ SP Y N P +KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y C
Sbjct: 123 SSLGSPCMNNYSCNSPGALTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTC 182
Query: 95 REGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP 154
R+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR++E+ E ESTS T EMP
Sbjct: 183 RDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRSREKSDTEAESTSSTSEEMP 242
Query: 155 VERILEAEQRVDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
VERILEAE VD K E D + N TNIC A DKQLF LV+WAK IP+F+ LPL
Sbjct: 243 VERILEAELAVDPKIEAFGDAGLPNSTNDPVTNICHAADKQLFTLVEWAKRIPYFSDLPL 302
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
EDQV+LLRAGWNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELV
Sbjct: 303 EDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELV 362
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
SKM++M MDK+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + ++PGR
Sbjct: 363 SKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGR 422
Query: 332 FAKLLLRLPSLRSI 345
FAKLLLRLP+LRSI
Sbjct: 423 FAKLLLRLPALRSI 436
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/341 (66%), Positives = 262/341 (76%), Gaps = 17/341 (4%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHY 70
S GS SS N SS+ I P P HP +KH+C+ICGDR+SGKHY
Sbjct: 88 STGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHY 147
Query: 71 GVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQE 130
GVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQE
Sbjct: 148 GVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 207
Query: 131 ERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATN 184
ERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + TN
Sbjct: 208 ERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTN 267
Query: 185 ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLA 244
IC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA
Sbjct: 268 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 428
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/339 (66%), Positives = 264/339 (77%), Gaps = 4/339 (1%)
Query: 11 NFNSGGANSMSSFGSNNHSSSHN-NGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKH 69
N G NS N+ SSS + + + YP P SKH+C+ICGDR+SGKH
Sbjct: 69 NMGYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGSLSKHICAICGDRSSGKH 128
Query: 70 YGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 129
YGVYSCEGCKGFFKRT+RKDL+Y CR+ ++C IDKRQRNRCQYCRYQKCL MGMKREAVQ
Sbjct: 129 YGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQ 188
Query: 130 EERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNIC 186
EERQR +ER NEV+S+S EMPVE+IL+AE V+ K E + ++ TNIC
Sbjct: 189 EERQRGRERSDNEVDSSSSFNEEMPVEKILDAELAVEPKTEAYMESSMSNSTNDPVTNIC 248
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRS++VKDGILLA G
Sbjct: 249 QAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATG 308
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+RSSAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 309 LHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEV 368
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE YT+ N+ ++PGRFAKLLLRLP+LRSI
Sbjct: 369 EALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSI 407
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 261/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHPLCG----SKHLCSICGDRASGKHYGV 72
GS +S N SS+ I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 260/339 (76%), Gaps = 17/339 (5%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYP-------PNHP----LCGSKHLCSICGDRASGKHYGV 72
GS +S N SS I P P HP +KH+C+ICGDR+SGKHYGV
Sbjct: 95 GSPQLNSPMNPVSSTEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGV 154
Query: 73 YSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132
YSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEER
Sbjct: 155 YSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214
Query: 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNIC 186
QR K+R+ NEVESTS +MPVE+ILEAE V+ K E + + TNIC
Sbjct: 215 QRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G
Sbjct: 275 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATG 334
Query: 247 VTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + V
Sbjct: 335 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 394
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 395 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/330 (66%), Positives = 258/330 (78%), Gaps = 18/330 (5%)
Query: 34 NGSSNSSIISPYP--------PNHPLCG----SKHLCSICGDRASGKHYGVYSCEGCKGF 81
N S++ I P P P HP +KH+C+ICGDR+SGKHYGVYSCEGCKGF
Sbjct: 125 NSVSSTEDIKPPPGINGILKVPMHPSGAMASFTKHICAICGDRSSGKHYGVYSCEGCKGF 184
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
FKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MGMKREAVQEERQR KER+ N
Sbjct: 185 FKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERNEN 244
Query: 142 EVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVN------EQQATNICKATDKQLFQ 195
EVES++ +MPVE+ILEAE V+ K E + + TNIC+A DKQLF
Sbjct: 245 EVESSNSANEDMPVEKILEAEHAVEPKTETYTEANMGLAPNSPSDPVTNICQAADKQLFT 304
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH
Sbjct: 305 LVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH 364
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY
Sbjct: 365 SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYA 424
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 425 SLEAYCKQKYPEQPGRFAKLLLRLPALRSI 454
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 248/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSSHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNVENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/304 (70%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 247/304 (81%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D ++ N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 246/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E + +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECANSGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDIVNEQQ--ATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + N TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 245/304 (80%), Gaps = 3/304 (0%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YP P KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL Y CR+ ++C+IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL MGMKREAVQEERQR++ER +E E S +MPVERILEAE
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERILEAELA 245
Query: 165 VDMKQEP-ADQDI--VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
V+ K E D + TNIC A DKQLF LV+WAK IPHF+ L LEDQV+LLRAG
Sbjct: 246 VEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAG 305
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRS+SV+DGILLA G+ V+RSSAH AGVG IFDRVLTELVSKM++M+MDK
Sbjct: 306 WNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDK 365
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
+ELGCLR I+LFNPD +GL + VE LREKVY +LE YT+ + E+PGRFAKLLLRLP+
Sbjct: 366 SELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPA 425
Query: 342 LRSI 345
LRSI
Sbjct: 426 LRSI 429
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/340 (64%), Positives = 260/340 (76%), Gaps = 4/340 (1%)
Query: 10 VNFNSGGANSMSSFGSN-NHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGK 68
+ FN+ + M+S N N G + +S Y P SKH+C+ICGDR+SGK
Sbjct: 79 MGFNTLNSPQMNSLSMNGNEDIKPPPGLAPLGNMSSYQCTSPGSLSKHICAICGDRSSGK 138
Query: 69 HYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 128
HYGVYSCEGCKGFFKRT+RKDL+Y CR+ + C+IDKRQRNRCQYCRYQKCL MGMKREAV
Sbjct: 139 HYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQKCLAMGMKREAV 198
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ---ATNI 185
QEERQR KE+ EVE+TS +MPV++IL+AE V+ K E + + TNI
Sbjct: 199 QEERQRGKEKSDTEVETTSRFNEDMPVDKILDAELSVEPKTETYTESSPSNSTNDPVTNI 258
Query: 186 CKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP 245
C A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILL
Sbjct: 259 CHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGT 318
Query: 246 GVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQV 305
G+ V+RSSAH AGVG IF+RVLTELVSKM++M+MDKTELGCLR I+LFNPD +GL +
Sbjct: 319 GLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLE 378
Query: 306 VEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE LREKVY SLE YT+ + ++PGRFAKLLLRLP+LRSI
Sbjct: 379 VEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSI 418
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/298 (69%), Positives = 243/298 (81%), Gaps = 8/298 (2%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 50 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYC 109
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL MGMKREAVQEERQR KER E + +MPVE+ILEAE V+ K E
Sbjct: 110 RYQKCLAMGMKREAVQEERQRAKERSEAEFGGCANE--DMPVEKILEAELAVEPKTETYV 167
Query: 174 QDIVN------EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ ++ TNIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLI
Sbjct: 168 EANLSPSANSPNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLI 227
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
ASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCL
Sbjct: 228 ASFSHRSIAVKDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCL 287
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
R I+LFNPD +GL + VE LRE+VY SLE Y + + ++PGRFAKLLLRLP+LRSI
Sbjct: 288 RAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSI 345
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/322 (66%), Positives = 245/322 (76%), Gaps = 27/322 (8%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K LC+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ ++C++DKRQRNR
Sbjct: 117 PMVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNR 176
Query: 110 CQYCRYQKCLNMGMKRE--------AVQEERQRTKERDSNEVESTSGTLIEMPVERILEA 161
CQYCRYQKCL MGMKRE +VQEERQR KERD EVES+S EMPVE+ILEA
Sbjct: 177 CQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERD-GEVESSSAANEEMPVEKILEA 235
Query: 162 EQRVDMKQE----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
E V+ K E + TNIC+A DKQLF LV+WAK IPHF+ L L+DQV+L
Sbjct: 236 EMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVIL 295
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG--------------VGGIF 263
LRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AG VG IF
Sbjct: 296 LRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIF 355
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVLTELVSKMR+M+MDKTELGCLR IILFNPD +GL S VE+LREKVY SLE Y +
Sbjct: 356 DRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQ 415
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ ++ GRFAKLLLRLP+LRSI
Sbjct: 416 RYPDQQGRFAKLLLRLPALRSI 437
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 238/300 (79%), Gaps = 9/300 (3%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 260
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE--- 170
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 261 RYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPE-EMPVDRILEAELAVEQKSDQGV 319
Query: 171 -----PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNEL 225
TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGWNEL
Sbjct: 320 EGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNEL 379
Query: 226 LIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELG 285
LIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELG
Sbjct: 380 LIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELG 439
Query: 286 CLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
CLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+LRSI
Sbjct: 440 CLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSI 499
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/311 (64%), Positives = 239/311 (76%), Gaps = 16/311 (5%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNR 109
P+ K +C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDLSY CR+ + C++DKRQRNR
Sbjct: 82 PMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNR 141
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
CQYCRYQKCL MGMKREAVQEERQ+ KERD + E +S EMPVE+ILEAE V+ +
Sbjct: 142 CQYCRYQKCLAMGMKREAVQEERQKNKERD-GDYECSSSANEEMPVEKILEAETAVEHRT 200
Query: 170 E-PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ +D TNIC+A DKQLF LV+WAK +PHF+ +PL+DQV+LLRAGWNELLIA
Sbjct: 201 DLHSDATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIA 260
Query: 229 SFSHRSISVKDGILLAPGVTVY--------------RSSAHEAGVGGIFDRVLTELVSKM 274
+FSHRSISVKD ILLA G+ V R S+H A VG +FDRVLTELV KM
Sbjct: 261 AFSHRSISVKDEILLATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKM 320
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
R+M+MDKTELGCLR I+LFNPD +GL S VE+LREKVY SLE Y + + ++ GRFAK
Sbjct: 321 RDMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAK 380
Query: 335 LLLRLPSLRSI 345
LLLRLP+LRSI
Sbjct: 381 LLLRLPALRSI 391
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/304 (67%), Positives = 241/304 (79%), Gaps = 15/304 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQY
Sbjct: 125 AGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQY 184
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CRYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +
Sbjct: 185 CRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---S 240
Query: 173 DQDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221
DQ + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAG
Sbjct: 241 DQGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG 300
Query: 222 WNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDK 281
WNELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDK
Sbjct: 301 WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK 360
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
TELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+
Sbjct: 361 TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA 420
Query: 342 LRSI 345
LRSI
Sbjct: 421 LRSI 424
>sp|P28704|RXRB_MOUSE Retinoic acid receptor RXR-beta OS=Mus musculus GN=Rxrb PE=2 SV=2
Length = 520
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/303 (67%), Positives = 241/303 (79%), Gaps = 15/303 (4%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC+ICGDR+SGKHYGVYSCEGCKGFFKRT+RKDL+Y+CR+ ++C +DKRQRNRCQYC
Sbjct: 188 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYC 247
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPAD 173
RYQKCL GMKREAVQEERQR K++D + + EMPV+RILEAE V+ K +D
Sbjct: 248 RYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPE-EMPVDRILEAELAVEQK---SD 303
Query: 174 QDI-----------VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGW 222
Q + TNIC+A DKQLF LV+WAK IPHF++LPL+DQV+LLRAGW
Sbjct: 304 QGVEGPGATGGGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGW 363
Query: 223 NELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKT 282
NELLIASFSHRSI V+DGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKT
Sbjct: 364 NELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKT 423
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL 342
ELGCLR IILFNPD +GL + VE+LREKVY SLE Y + + E+ GRFAKLLLRLP+L
Sbjct: 424 ELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPAL 483
Query: 343 RSI 345
RSI
Sbjct: 484 RSI 486
>sp|O76202|USP_CHOFU Protein ultraspiracle homolog OS=Choristoneura fumiferana GN=USP
PE=2 SV=1
Length = 472
Score = 362 bits (930), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 248/374 (66%), Gaps = 49/374 (13%)
Query: 1 MKPDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSI 60
MKPDTA L G + ++S N + YPPNHPL GSKHLCSI
Sbjct: 83 MKPDTAML--------------DGLRDDATSPPNFKN-------YPPNHPLSGSKHLCSI 121
Query: 61 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLN 120
CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACRE RNCIIDKRQRNRCQYCRYQKCL
Sbjct: 122 CGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLA 181
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLI--EMPVERILEAEQRVDMKQEP------- 171
GMKREAVQEERQR R + + +S + E+ +ER+ E E V E
Sbjct: 182 CGMKREAVQEERQRNA-RGAEDAHPSSSVQVSDELSIERLTEMESLVADPSEEFQFLRVG 240
Query: 172 ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
D ++ +A +++C+ +KQ+ LV WA+ IPHF L L+DQV+L++A WNELL+ +
Sbjct: 241 PDSNVPPRYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELDDQVVLIKASWNELLLFA 300
Query: 230 FSHRSISV-------KDG---------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSK 273
+ RS+ DG + L PG+T++R+SA +AGVG IFDRVL+EL K
Sbjct: 301 IAWRSMEYLEDERENGDGTRSTTQPQLMCLMPGMTLHRNSAQQAGVGAIFDRVLSELSLK 360
Query: 274 MREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFA 333
MR ++MD+ E L+ I+L NPDV+GLK++Q V++LREK+++ L++Y R + S E GRFA
Sbjct: 361 MRTLRMDQAEYVALKAIVLLNPDVKGLKNRQEVDVLREKMFSCLDDYCRRSRSNEEGRFA 420
Query: 334 KLLLRLPSLRSIEV 347
LLLRLP+LRSI +
Sbjct: 421 SLLLRLPALRSISL 434
>sp|P20153|USP_DROME Protein ultraspiracle OS=Drosophila melanogaster GN=usp PE=1 SV=1
Length = 508
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 181/380 (47%), Positives = 233/380 (61%), Gaps = 77/380 (20%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 91 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVES------------------- 145
RQRNRCQYCRYQKCL GMKREAVQEERQR + + +
Sbjct: 151 RQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGG 210
Query: 146 --------------------TSGTLIEMPVERILEAEQRVD----------MKQEPADQD 175
T+ + +ERI+EAEQR + ++ P
Sbjct: 211 GGGGGVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTV 270
Query: 176 IVNEQQATN-ICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA------ 228
+ + A + +C+ +KQLFQ+V++A+ +PHF +PL+DQV+LL+A W ELLIA
Sbjct: 271 QPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCS 330
Query: 229 --------------------SFSHRSISVK-DGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
SF RS ++ + L + +R+SA +AGV IFDR+L
Sbjct: 331 IVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRIL 390
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+EL KM+ + +D+ EL CL+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H
Sbjct: 391 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 450
Query: 328 EPGRFAKLLLRLPSLRSIEV 347
+ GRFA+LLLRLP+LRSI +
Sbjct: 451 DDGRFAQLLLRLPALRSISL 470
>sp|P54779|USP_MANSE Protein ultraspiracle homolog OS=Manduca sexta GN=USP PE=2 SV=1
Length = 461
Score = 334 bits (856), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 170/312 (54%), Positives = 215/312 (68%), Gaps = 26/312 (8%)
Query: 45 YPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDK 104
YPPNHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDK
Sbjct: 100 YPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDK 159
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQR 164
RQRNRCQYCRYQKCL GMKREAVQEERQR E S ++ E+ +ER+LE E
Sbjct: 160 RQRNRCQYCRYQKCLACGMKREAVQEERQRAAR--GTEDAHPSSSVQELSIERLLEIESL 217
Query: 165 VDMKQEP-------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
V E + + + +A +++C+ +KQ+ LV WA+ IPHF L LEDQ+
Sbjct: 218 VADPPEEFQFLRVGPESGVPAKYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELEDQI 277
Query: 216 LLLRAGWNELLIASFSHRSI---------------SVKDGILLAPGVTVYRSSAHEAGVG 260
LL++ WNELL+ + + RS+ + + L PG+T++R+SA +AGVG
Sbjct: 278 LLIKNSWNELLLFAIAWRSMEYLTDERENVDSRSTAPPQLMCLMPGMTLHRNSALQAGVG 337
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
IFDRVL+EL KMR ++MD+ E L+ IIL NPDV+GLK++ V +LREK+++ L+EY
Sbjct: 338 QIFDRVLSELSLKMRTLRMDQAEYVALKAIILLNPDVKGLKNKPEVVVLREKMFSCLDEY 397
Query: 321 TRVNHSEEPGRF 332
R + E GRF
Sbjct: 398 VRRSRCAEEGRF 409
>sp|P49700|USP_BOMMO Protein ultraspiracle homolog OS=Bombyx mori GN=USP PE=2 SV=1
Length = 462
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/309 (53%), Positives = 211/309 (68%), Gaps = 26/309 (8%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE +NCIIDKRQR
Sbjct: 104 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDKNCIIDKRQR 163
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDM 167
NRCQYCRYQKCL GMKREAVQEERQR R E S ++ E+ +ER+LE E V
Sbjct: 164 NRCQYCRYQKCLACGMKREAVQEERQRAARR--TEDAHPSSSVQELSIERLLELEALVAD 221
Query: 168 KQEPADQDIVNEQQA---------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E V + +++C+ +KQ+ L+ WA+ IPHF L ++DQ+LL+
Sbjct: 222 SAEELQILRVGPESGVPAKYRAPVSSLCQIGNKQIAALIVWARDIPHFGQLEIDDQILLI 281
Query: 219 RAGWNELLIASFSHRSISVKDG---------------ILLAPGVTVYRSSAHEAGVGGIF 263
+ WNELL+ + + RS+ + I L PG+T++R+SA +AGVG IF
Sbjct: 282 KGSWNELLLFAIAWRSMEFLNDERENVDSRNTAPPQLICLMPGMTLHRNSALQAGVGQIF 341
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVL+EL KMR ++MD+ E L+ IIL NPDV+GLK++Q V++LREK++ L+EY R
Sbjct: 342 DRVLSELSLKMRSLRMDQAECVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLDEYCRR 401
Query: 324 NHSEEPGRF 332
+ E GRF
Sbjct: 402 SRGGEEGRF 410
>sp|P49866|HNF4_DROME Transcription factor HNF-4 homolog OS=Drosophila melanogaster
GN=Hnf4 PE=2 SV=2
Length = 666
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 186/302 (61%), Gaps = 15/302 (4%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y CR RNC++DK +RN+C+YCR +
Sbjct: 103 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 162
Query: 117 KCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQ-----RVDMKQEP 171
KC GMK+EAVQ ER R R ++ + G + V +++AE + EP
Sbjct: 163 KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGN--GLSVISLVKAENESRQSKAGAAMEP 220
Query: 172 -ADQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
++D+ N+Q A+ ++C++ +QL LV+WAK IP F L L+DQV LLRA E L+
Sbjct: 221 NINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLL 280
Query: 229 SFSHRSISVKDGILLAPGVTVYRSS-----AHEAGVGGIFDRVLTELVSKMREMKMDKTE 283
S RS+ +KD +LL+ + R + + I R++ ELV+ M+++ +D TE
Sbjct: 281 GLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTE 340
Query: 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLR 343
C++ ++ F+P+ +GL ++ LR ++ +LE+Y E GRF ++LL LP L+
Sbjct: 341 FACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQ 400
Query: 344 SI 345
SI
Sbjct: 401 SI 402
>sp|Q9WUU6|HNF4G_MOUSE Hepatocyte nuclear factor 4-gamma OS=Mus musculus GN=Hnf4g PE=2
SV=2
Length = 408
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 178/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTYEGSNIPSINTLAQAEVRSCQISVPSPSSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D +I +++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINIKKIASISDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E V + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNHYVIHRNSC-EVEVSRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQISLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>sp|Q91766|HNF4A_XENLA Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis GN=hnf4a PE=2
SV=2
Length = 464
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 199/330 (60%), Gaps = 24/330 (7%)
Query: 22 SFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGF 81
S G++ +S + S+++SI G LC+ICGDRA+GKHYG SC+GCKGF
Sbjct: 35 SIGTDTSTSDVTSLSASNSI-----------GINSLCAICGDRATGKHYGASSCDGCKGF 83
Query: 82 FKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSN 141
F+R+VRK+ Y+CR R C++DK +RN+C+YCR +KC GMK+EAVQ ER R R S+
Sbjct: 84 FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSS 143
Query: 142 EVESTSGTLIEMP-VERILEAE---QRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQ 195
+S+ +P + +++AE Q++ + DI ++ A ++C + +QL
Sbjct: 144 YEDSS------LPSINVLIQAEVLSQQITSSVGVLNTDIRGKKIACIIDVCDSMKQQLLV 197
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
LV+WAK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL + R+
Sbjct: 198 LVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMFKDILLLGNDRLIPRNCP- 256
Query: 256 EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYT 315
E VG + R+L ELV +E+++D E CL+ II F+PD +GL ++ +R +V
Sbjct: 257 ELEVGRVAVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQV 316
Query: 316 SLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
SLE+Y + GRF +LLL LP+L+SI
Sbjct: 317 SLEDYINDRQYDSRGRFGELLLLLPTLQSI 346
>sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopus laevis GN=hnf4b PE=2
SV=1
Length = 446
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 180/298 (60%), Gaps = 11/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G C+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ YACR R CI+DK +RN+C+Y
Sbjct: 45 GINSFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYACRFSRQCIVDKDKRNQCRY 104
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ ++ S + + + +AE V +
Sbjct: 105 CRLRKCFRAGMKKEAVQNERDRISMRRSSYEDNGS-----LSINVLTQAEAMVHQYSPVS 159
Query: 173 ---DQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
DI ++ A +++C++ +QL LV+WAK+IP F LPL+DQV LLRA L+
Sbjct: 160 PVHSSDISMKKVASISDVCESMKQQLLLLVEWAKYIPAFCELPLDDQVALLRAHAGAHLL 219
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL + E + + R+L ELV +RE+++D E CL
Sbjct: 220 LGVAKRSLPYKDFLLLGNDF-IMPMHCPELEIARVPCRILDELVKPLREIQIDDNEYVCL 278
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL Q V+ +R +V +LE+Y + GRF+ +LL LP L+SI
Sbjct: 279 KAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDYINDRQFDSRGRFSDILLLLPPLQSI 336
>sp|P49698|HNF4A_MOUSE Hepatocyte nuclear factor 4-alpha OS=Mus musculus GN=Hnf4a PE=1
SV=2
Length = 474
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>sp|P22449|HNF4A_RAT Hepatocyte nuclear factor 4-alpha OS=Rattus norvegicus GN=Hnf4a
PE=1 SV=3
Length = 474
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 185/299 (61%), Gaps = 12/299 (4%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP-VERILEAE---QRVDMK 168
CR +KC GMK+EAVQ ER R R S+ +S+ +P + +L+AE Q++
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSS------LPSINALLQAEVLSQQITSP 168
Query: 169 QEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226
+ DI ++ A T++C++ +QL LV+WAK+IP F L L+DQV LLRA E L
Sbjct: 169 ISGINGDIRAKKIANITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHL 228
Query: 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286
+ + RS+ KD +LL V R A + + R+L ELV +E+++D E C
Sbjct: 229 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAC 288
Query: 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 289 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>sp|Q14541|HNF4G_HUMAN Hepatocyte nuclear factor 4-gamma OS=Homo sapiens GN=HNF4G PE=1
SV=3
Length = 408
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 1/293 (0%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R++RK Y+CR R C++DK +RN+C+Y
Sbjct: 7 GVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S S ++ + + + V
Sbjct: 67 CRLRKCFRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSST 126
Query: 173 DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232
D ++ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+ +
Sbjct: 127 DINVKKIASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 186
Query: 233 RSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIIL 292
RS+ KD +LL ++R+S E + + +RVL ELV +E+++D E CL+ I+
Sbjct: 187 RSMMYKDILLLGNNYVIHRNSC-EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 245
Query: 293 FNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
F+PD +GL ++ +R +V LE+Y + GRF +LLL LP+L+SI
Sbjct: 246 FDPDAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSI 298
>sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-alpha OS=Homo sapiens GN=HNF4A PE=1
SV=3
Length = 474
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/298 (42%), Positives = 182/298 (61%), Gaps = 10/298 (3%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
G LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+Y
Sbjct: 55 GVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRY 114
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA 172
CR +KC GMK+EAVQ ER R R S+ +S+ + + +L+AE P
Sbjct: 115 CRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPS-----INALLQAEVLSRQITSPV 169
Query: 173 ---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227
+ DI ++ A+ ++C++ +QL LV+WAK+IP F LPL+DQV LLRA E L+
Sbjct: 170 SGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLL 229
Query: 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ RS+ KD +LL V R A + + R+L ELV +E+++D E L
Sbjct: 230 LGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYL 289
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ II F+PD +GL ++ LR +V SLE+Y + GRF +LLL LP+L+SI
Sbjct: 290 KAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSI 347
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 75 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 134
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 135 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 194
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 195 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 254
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 255 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 313
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 314 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 369
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC ID+ RN+CQYCR +K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + T+G + + + +L AE +
Sbjct: 139 CLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGS 198
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 199 QCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAA 258
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 259 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 317
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL VE L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 318 IVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTV 373
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 147 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 206
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 207 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 266
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 267 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 325
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 326 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 381
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 86 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 145
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 146 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 205
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 206 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 265
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 266 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 324
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 325 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 380
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 85 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 144
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 145 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 204
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 205 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 264
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E CL+
Sbjct: 265 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKA 323
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 324 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 379
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQYCR +K
Sbjct: 76 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 135
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 136 CLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGS 195
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 196 QCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 255
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R+ E V K++ + +D E C++
Sbjct: 256 QCSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKA 314
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLPSLR++
Sbjct: 315 IVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTV 370
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 166/296 (56%), Gaps = 9/296 (3%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +CGD++SGKHYG ++CEGCK FFKR+VR++LSY CR RNC +D+ RN+CQYCR +K
Sbjct: 54 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRLKK 113
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSG------TLIEMPVERILEAEQRVDMKQEP 171
CL +GM+REAVQ R + + + T+G + + +L AE +
Sbjct: 114 CLKVGMRREAVQRGRMPPNQPNPSHYALTNGDHLNGQCYLSGYISLLLRAEPYPASRYGN 173
Query: 172 ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFS 231
N NIC+ + LF V+WA++IP F L + DQV LLR W+EL + + +
Sbjct: 174 QCMQSGNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 233
Query: 232 HRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRT 289
S+ + LLA ++ S V D R E V K++ +++D E C +
Sbjct: 234 QSSMPLHVAPLLA-AAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKA 292
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I+LF D GL +E L+EK +LEEY R + +P RF KLLLRLP+LR +
Sbjct: 293 IVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMV 348
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 169/321 (52%), Gaps = 12/321 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL---CSICGDRASGKHYGVYSCEGCKG 80
GS S G + + P N L G K C +CGD++SGKHYG ++CEGCK
Sbjct: 17 GSQLQMCSQEPGGTPGTPSGSTPGNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKS 76
Query: 81 FFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD- 139
FFKR+VR++LSY CR R+C ID+ RN+CQYCR +KCL +GM+REAVQ R +
Sbjct: 77 FFKRSVRRNLSYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQSSP 136
Query: 140 ----SNEVESTSG-TLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLF 194
SN + +G + + +L AE + N NIC+ + LF
Sbjct: 137 GQYLSNGSDPYNGQPYLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAARLLF 196
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA 254
V+WAK+IP F L L DQV LLR W+EL + + + S+ + LLA ++ S
Sbjct: 197 SAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHVAPLLA-AAGLHASPM 255
Query: 255 HEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
V D RV E V K++ +++D E CL++I+LF D GL VE ++EK
Sbjct: 256 SAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEK 315
Query: 313 VYTSLEEYTRVNHSEEPGRFA 333
+LEEY R + +P RF
Sbjct: 316 SQCALEEYVRNQYPNQPNRFG 336
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 208 bits (529), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 166/319 (52%), Gaps = 12/319 (3%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 83
GS ++ ++ S + P + G + C +CGD++SGKHYGV++CEGCK FFK
Sbjct: 23 GSYPRATEDDSASPPGATSDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFK 82
Query: 84 RTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER--------QRT 135
R++R++LSY CR R+C ID+ RN+CQYCR +KC +GM++EAVQ R
Sbjct: 83 RSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHALPGPAAC 142
Query: 136 KERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ 195
+ VE +G + + ++L AE + ++ N+C+ + LF
Sbjct: 143 SPPGATGVEPFTGPPVSELIAQLLRAEPYPAAGRFGGGGAVLG---IDNVCELAARLLFS 199
Query: 196 LVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH 255
V+WA+H P F LP DQV LLR W+EL + + + ++ + LLA A
Sbjct: 200 TVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAA 259
Query: 256 EAGVGGIFD-RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314
E V + R E V K+ +++D E GCL+ I LF PD GL VE L+EK
Sbjct: 260 ERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQ 319
Query: 315 TSLEEYTRVNHSEEPGRFA 333
+L EY R + +P RF
Sbjct: 320 VALTEYVRAQYPSQPQRFG 338
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 179/335 (53%), Gaps = 47/335 (14%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRN-CIIDKRQRNRCQYCRYQ 116
C +CGD +SGKHYG+Y+C GC GFFKR+VR+ L Y C+ G C +DK RN+CQ CR +
Sbjct: 47 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 106
Query: 117 KCLNMGMKREAVQEERQ-RTKER---DSNE--VESTSGTLIEMP---------------- 154
KCL GM ++AVQ ERQ R+ + DS E ES +L+ P
Sbjct: 107 KCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAA 166
Query: 155 -------VERILEAEQRVDMKQEPADQDI---VNEQQAT-------------NICKATDK 191
+ ++ AE ++ E AD++I N+ + +I + + +
Sbjct: 167 RALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSAR 226
Query: 192 QLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR 251
LF V WAK++P F++LP DQV+LL W+EL + S+ + LLAP
Sbjct: 227 LLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAA 286
Query: 252 SSAH-EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
A + + RVL E +S+ R + +D TE C++ ++LF P+ RGLK + VE L+
Sbjct: 287 GGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 346
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
++ L ++++ +H +P RF KLLL LPSLR I
Sbjct: 347 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFI 381
>sp|Q5RAM2|ERR3_PONAB Estrogen-related receptor gamma OS=Pongo abelii GN=ESRRG PE=2 SV=1
Length = 435
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 20/305 (6%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 102 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 161
Query: 115 YQKCLNMGMKREAVQEE-----RQRTKERDSNEVESTSGTLIEMP--------VERILEA 161
+ KCL +GM +E V+ + RQ+ K R E + P V +L A
Sbjct: 162 FMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVA 221
Query: 162 E-QRVDMKQEPA--DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
E +++ +P D DI + T +C D++L ++ WAKHIP F+TL L DQ+ LL
Sbjct: 222 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLL 278
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K + MK
Sbjct: 279 QSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMK 337
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K+L+
Sbjct: 338 LEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMT 397
Query: 339 LPSLR 343
LP LR
Sbjct: 398 LPLLR 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,025,373
Number of Sequences: 539616
Number of extensions: 5118742
Number of successful extensions: 45426
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 41391
Number of HSP's gapped (non-prelim): 3421
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)