Query psy3092
Match_columns 347
No_of_seqs 290 out of 1423
Neff 9.3
Searched_HMMs 29240
Date Sat Aug 17 01:27:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzy_A Retinoic acid receptor 100.0 4.9E-69 1.7E-73 512.8 23.0 294 53-346 135-434 (467)
2 3dzy_D Peroxisome proliferator 100.0 1.3E-60 4.6E-65 450.1 24.6 287 55-346 50-388 (419)
3 1lbd_A RXR_LBD, retinoid X rec 100.0 3.8E-41 1.3E-45 303.1 18.5 231 116-346 13-249 (282)
4 2han_A Protein ultraspiracle; 100.0 3.2E-38 1.1E-42 230.7 2.9 84 53-136 8-91 (93)
5 1ynw_B Retinoic acid receptor 100.0 1.3E-37 4.4E-42 229.9 4.9 91 56-146 4-94 (99)
6 2ebl_A COUP transcription fact 100.0 7.8E-37 2.7E-41 221.2 5.2 79 56-134 8-86 (89)
7 1dsz_B RXR-alpha, retinoic aci 100.0 2.8E-37 9.7E-42 221.8 2.8 79 56-134 6-84 (85)
8 3cbb_A HNF-4-alpha, hepatocyte 100.0 5.5E-37 1.9E-41 216.9 4.0 77 57-133 2-78 (78)
9 1dsz_A RAR-alpha, retinoic aci 100.0 1.3E-36 4.5E-41 219.1 4.4 81 56-136 5-85 (86)
10 1hcq_A Protein (estrogen recep 100.0 3.1E-36 1.1E-40 215.9 5.6 78 56-133 5-82 (84)
11 2nxx_A Ultraspiracle (USP, NR2 100.0 1.1E-33 3.9E-38 247.6 21.1 196 150-346 6-203 (235)
12 1xdk_B RAR-beta, retinoic acid 100.0 1.8E-33 6.3E-38 254.9 21.3 223 123-346 1-236 (303)
13 2p1t_A Retinoic acid receptor 100.0 1.4E-33 4.7E-38 248.0 19.2 196 151-346 6-207 (240)
14 1a6y_A Orphan nuclear receptor 100.0 4.8E-36 1.6E-40 219.6 2.5 83 55-137 7-90 (94)
15 1cit_A NGFI-B, protein (orphan 100.0 1.8E-35 6.3E-40 214.3 4.7 78 57-134 2-79 (89)
16 4hn5_A Glucocorticoid receptor 100.0 2.4E-35 8.3E-40 223.6 5.0 81 56-136 30-110 (117)
17 1lo1_A Steroid hormone recepto 100.0 5.9E-36 2E-40 220.6 1.6 81 56-136 5-85 (98)
18 3g9m_A Glucocorticoid receptor 100.0 5.6E-35 1.9E-39 213.2 5.8 83 56-138 3-85 (90)
19 1kb2_A Vitamin D3 receptor; VD 100.0 4.3E-35 1.5E-39 220.7 4.6 79 56-134 7-85 (110)
20 2nll_B Protein (thyroid hormon 100.0 6.4E-35 2.2E-39 217.4 4.9 82 56-137 2-85 (103)
21 1g2n_A Ultraspiracle protein; 100.0 1.1E-32 3.7E-37 245.5 20.3 196 151-346 4-226 (264)
22 2e2r_A Estrogen-related recept 100.0 1.6E-32 5.4E-37 241.5 20.4 195 151-346 15-213 (244)
23 2a66_A Orphan nuclear receptor 100.0 3.9E-35 1.3E-39 221.4 3.0 80 56-135 10-89 (113)
24 3k6p_A Steroid hormone recepto 100.0 2.6E-32 8.8E-37 240.6 19.3 194 152-346 16-217 (248)
25 3ltx_A Estrogen receptor; cons 100.0 2.5E-32 8.5E-37 240.1 18.9 168 178-346 34-202 (243)
26 2han_B Ecdysone receptor; tran 100.0 2E-34 6.9E-39 220.4 4.5 80 56-135 9-88 (119)
27 1r4i_A Androgen receptor; AR, 100.0 2.4E-34 8.1E-39 214.5 4.2 79 56-134 8-86 (105)
28 1hg4_A Ultraspiracle; nuclear 100.0 3.7E-32 1.3E-36 244.1 19.0 196 151-346 7-240 (279)
29 3cqv_A Nuclear receptor subfam 100.0 5.1E-32 1.7E-36 231.1 18.3 168 178-346 18-185 (199)
30 1fcy_A RAR-gamma-1, retinoic a 100.0 5.8E-32 2E-36 236.9 18.2 166 180-346 44-209 (236)
31 1ovl_A Orphan nuclear receptor 100.0 2.7E-31 9.2E-36 237.4 20.3 221 123-346 1-239 (271)
32 3n00_A REV-ERBA-alpha; reverba 100.0 2.1E-31 7.2E-36 233.9 17.9 166 180-346 65-230 (245)
33 3kmr_A Retinoic acid receptor 100.0 3.5E-31 1.2E-35 235.4 17.8 166 180-346 68-233 (266)
34 2iz2_A FTZ-F1 alpha, nuclear h 100.0 4.7E-31 1.6E-35 231.8 18.0 166 180-346 46-213 (243)
35 1pzl_A Hepatocyte nuclear fact 100.0 4.7E-31 1.6E-35 231.5 16.6 168 179-346 40-207 (237)
36 3mnp_A Glucocorticoid receptor 100.0 5.2E-31 1.8E-35 233.7 17.0 191 155-346 17-213 (261)
37 3ilz_A Thyroid hormone recepto 100.0 7E-31 2.4E-35 233.8 17.6 167 179-346 69-235 (267)
38 3ipq_A Oxysterols receptor LXR 100.0 9.7E-31 3.3E-35 234.9 18.5 168 179-346 87-254 (283)
39 1nq7_A Nuclear receptor ROR-be 100.0 1.1E-30 3.9E-35 229.6 18.3 165 179-346 49-213 (244)
40 3b0t_A Vitamin D3 receptor; nu 100.0 1.5E-30 5.3E-35 230.4 18.1 165 181-346 57-225 (254)
41 2r40_D Ecdysone receptor, 20-h 100.0 1.3E-30 4.4E-35 232.0 17.6 165 180-346 68-235 (266)
42 3vhv_A Mineralocorticoid recep 100.0 9.7E-31 3.3E-35 231.9 16.6 169 177-346 37-211 (260)
43 3plz_A FTZ-F1 related protein; 100.0 9.8E-31 3.3E-35 231.5 16.4 166 180-346 56-226 (257)
44 1ymt_A Steroidogenic factor 1; 100.0 1.2E-30 4.1E-35 229.9 15.9 166 180-346 45-215 (246)
45 1yye_A ER-beta, estrogen recep 100.0 1.7E-30 5.9E-35 231.3 16.9 166 180-346 31-207 (268)
46 3oll_A Estrogen receptor beta; 100.0 2.6E-30 8.7E-35 227.0 17.3 168 178-346 31-209 (240)
47 1l2j_A Estrogen receptor beta; 100.0 1.6E-30 5.3E-35 232.0 15.4 167 179-346 58-235 (271)
48 2ocf_A Estrogen receptor; estr 100.0 1.3E-30 4.3E-35 235.0 14.6 166 180-346 44-221 (298)
49 3vhu_A Mineralocorticoid recep 100.0 3.2E-30 1.1E-34 231.8 16.9 169 177-346 71-245 (294)
50 2o4j_A Vitamin D3 receptor; nu 100.0 4.3E-30 1.5E-34 231.4 17.8 166 180-346 59-228 (292)
51 2nxx_E Ecdysone receptor (ECR, 100.0 5.4E-30 1.9E-34 225.8 18.0 166 179-346 51-217 (248)
52 1pdu_A DHR38, nuclear hormone 100.0 2.7E-30 9.2E-35 226.8 15.8 166 178-346 45-212 (244)
53 1n83_A Nuclear receptor ROR-al 100.0 1.2E-29 4.1E-34 226.0 20.0 164 180-346 65-228 (270)
54 1xpc_A Estrogen receptor; nucl 100.0 9.5E-31 3.3E-35 230.8 12.4 166 180-346 35-212 (248)
55 1xvp_B Orphan nuclear receptor 100.0 4.7E-30 1.6E-34 226.2 16.4 167 179-346 53-221 (246)
56 2hc4_A Vitamin D receptor; alp 100.0 1.5E-29 5E-34 228.7 19.2 165 180-346 102-269 (302)
57 3p0u_A Nuclear receptor subfam 100.0 5.5E-30 1.9E-34 225.9 16.0 167 180-346 34-207 (249)
58 1sqn_A PR, progesterone recept 100.0 2.9E-30 1E-34 229.1 14.3 167 179-346 40-212 (261)
59 1t7r_A Androgen receptor; nucl 100.0 4.7E-30 1.6E-34 228.7 15.7 167 179-346 48-220 (269)
60 3vi8_A Peroxisome proliferator 100.0 1.3E-29 4.4E-34 225.7 18.5 189 155-346 49-242 (273)
61 1z5x_E Ecdysone receptor ligan 100.0 1.2E-29 4E-34 229.8 17.7 166 179-346 115-281 (310)
62 1osh_A BIle acid receptor; nuc 100.0 5.2E-30 1.8E-34 224.0 14.8 164 179-346 41-204 (232)
63 3v3e_B Nuclear receptor subfam 100.0 8.8E-30 3E-34 225.0 16.2 165 179-346 51-217 (257)
64 3cjw_A COUP transcription fact 100.0 1.7E-29 5.7E-34 222.4 17.4 165 181-346 38-204 (244)
65 3tx7_B Nuclear receptor subfam 100.0 4.3E-30 1.5E-34 235.8 13.5 166 180-346 151-321 (352)
66 1nrl_A Orphan nuclear receptor 100.0 9E-30 3.1E-34 230.7 15.4 164 180-346 120-286 (316)
67 3f5c_B Nuclear receptor subfam 100.0 2.1E-29 7.1E-34 223.8 16.6 168 180-347 47-239 (268)
68 3l0l_A Nuclear receptor ROR-ga 100.0 6.4E-29 2.2E-33 218.8 16.7 163 179-346 55-217 (248)
69 3u9q_A Peroxisome proliferator 100.0 2E-28 6.8E-33 217.7 17.8 162 182-346 74-239 (269)
70 3up3_A Acedaf-12; ligand bindi 100.0 4.8E-29 1.7E-33 218.4 12.9 163 183-346 44-216 (243)
71 3gyt_A Nuclear hormone recepto 99.9 3.1E-26 1.1E-30 199.8 15.5 161 183-346 44-216 (244)
72 2lze_A A primordial catalytic 99.9 1.9E-23 6.6E-28 149.3 0.8 63 63-127 12-74 (87)
73 2lze_A A primordial catalytic 93.9 0.049 1.7E-06 38.5 3.5 18 53-70 15-32 (87)
74 2ku3_A Bromodomain-containing 73.3 1.5 5.2E-05 29.5 1.7 52 55-117 16-67 (71)
75 2vut_I AREA, nitrogen regulato 70.8 2.9 9.9E-05 25.0 2.4 30 56-85 2-35 (43)
76 2yqp_A Probable ATP-dependent 69.4 5.5 0.00019 25.2 3.4 14 57-76 21-34 (60)
77 1wfl_A Zinc finger protein 216 64.9 4 0.00014 27.5 2.3 23 56-82 26-48 (74)
78 1weu_A Inhibitor of growth fam 64.0 12 0.00041 26.4 4.8 22 54-79 35-58 (91)
79 1gnf_A Transcription factor GA 63.3 7.1 0.00024 23.7 3.0 30 56-85 5-38 (46)
80 2crw_A ARF GAP 3, ADP-ribosyla 63.1 3.2 0.00011 32.3 1.9 31 55-85 29-62 (149)
81 2iqj_A Stromal membrane-associ 62.3 2.5 8.7E-05 32.3 1.1 31 55-85 27-60 (134)
82 2crr_A Stromal membrane-associ 62.1 3.2 0.00011 32.1 1.7 31 55-85 29-62 (141)
83 3dwd_A ADP-ribosylation factor 61.2 4.5 0.00015 31.3 2.3 31 55-85 38-71 (147)
84 2l43_A N-teminal domain from h 60.0 8.2 0.00028 27.0 3.4 51 56-117 26-76 (88)
85 2olm_A Nucleoporin-like protei 59.7 3 0.0001 32.2 1.1 31 55-85 25-58 (140)
86 3j20_P 30S ribosomal protein S 59.4 9 0.00031 24.3 3.1 23 56-78 19-42 (56)
87 2p57_A GTPase-activating prote 58.8 3.4 0.00012 32.0 1.3 31 55-85 37-70 (144)
88 2owa_A Arfgap-like finger doma 58.2 3.3 0.00011 31.8 1.1 31 55-85 36-69 (138)
89 2yt5_A Metal-response element- 57.1 5 0.00017 26.2 1.8 54 56-117 7-62 (66)
90 2pv0_B DNA (cytosine-5)-methyl 56.7 8.5 0.00029 34.9 3.7 73 55-129 50-132 (386)
91 3dfx_A Trans-acting T-cell-spe 55.1 10 0.00036 24.7 3.0 30 56-85 8-41 (63)
92 3sub_A ADP-ribosylation factor 54.8 5.3 0.00018 31.5 1.8 31 55-85 22-55 (163)
93 2puy_A PHD finger protein 21A; 51.8 6.8 0.00023 25.1 1.7 49 55-117 5-53 (60)
94 2kae_A GATA-type transcription 50.1 12 0.0004 25.1 2.6 29 56-85 9-43 (71)
95 3j21_g 50S ribosomal protein L 49.9 3.6 0.00012 25.6 0.1 21 55-78 14-34 (51)
96 3iz6_N 40S ribosomal protein S 49.2 7.4 0.00025 24.7 1.5 23 56-78 19-42 (56)
97 4gat_A Nitrogen regulatory pro 48.4 16 0.00054 24.0 3.1 30 56-85 10-43 (66)
98 1we9_A PHD finger family prote 47.8 5.9 0.0002 25.7 0.9 53 56-117 7-59 (64)
99 1d4u_A Nucleotide excision rep 47.6 6.4 0.00022 28.9 1.2 23 57-79 7-33 (111)
100 2ro1_A Transcription intermedi 46.8 15 0.00052 29.7 3.5 47 56-116 3-49 (189)
101 1wev_A Riken cDNA 1110020M19; 45.8 5.6 0.00019 27.9 0.6 54 56-117 17-73 (88)
102 1wew_A DNA-binding family prot 45.1 8.3 0.00028 26.2 1.4 53 56-116 17-72 (78)
103 3o47_A ADP-ribosylation factor 44.4 11 0.00036 33.5 2.4 31 55-85 37-70 (329)
104 1xwh_A Autoimmune regulator; P 44.4 5.2 0.00018 26.3 0.2 48 56-117 9-56 (66)
105 2v79_A DNA replication protein 43.8 70 0.0024 24.1 6.6 29 269-297 20-48 (135)
106 2lbm_A Transcriptional regulat 43.6 7.2 0.00024 30.1 0.9 66 56-128 15-99 (142)
107 3u5c_d S36, YS29, 40S ribosoma 42.9 10 0.00034 24.1 1.4 23 56-78 19-42 (56)
108 3kv5_D JMJC domain-containing 42.5 4.7 0.00016 38.0 -0.3 52 56-117 38-89 (488)
109 2e6r_A Jumonji/ARID domain-con 41.4 50 0.0017 23.1 5.1 52 56-118 17-68 (92)
110 2xzm_N RPS29E; ribosome, trans 39.6 15 0.00051 23.2 1.8 23 56-78 18-41 (55)
111 3a1b_A DNA (cytosine-5)-methyl 38.9 22 0.00074 27.9 3.0 72 55-128 36-117 (159)
112 2xb1_A Pygopus homolog 2, B-ce 36.3 6.2 0.00021 28.7 -0.4 58 56-117 4-62 (105)
113 3o36_A Transcription intermedi 36.1 19 0.00065 28.9 2.4 48 56-117 5-52 (184)
114 1weo_A Cellulose synthase, cat 35.2 41 0.0014 23.4 3.5 9 56-64 17-25 (93)
115 1x62_A C-terminal LIM domain p 34.7 44 0.0015 22.2 3.8 24 56-79 16-48 (79)
116 1zbd_B Rabphilin-3A; G protein 34.2 20 0.0007 27.2 2.2 47 56-117 56-108 (134)
117 3ql9_A Transcriptional regulat 33.7 19 0.00064 27.2 1.9 67 56-126 9-91 (129)
118 3izc_m 60S ribosomal protein R 33.4 24 0.00082 24.8 2.2 23 56-78 37-60 (92)
119 2ri7_A Nucleosome-remodeling f 33.3 4.9 0.00017 32.1 -1.6 52 55-117 8-60 (174)
120 3jue_A Arfgap with coiled-coil 31.2 18 0.00062 32.6 1.7 31 55-85 45-78 (368)
121 1x64_A Alpha-actinin-2 associa 31.0 76 0.0026 21.5 4.7 24 56-79 26-58 (89)
122 3u5n_A E3 ubiquitin-protein li 30.7 18 0.00062 29.7 1.5 47 56-116 8-54 (207)
123 2dj8_A Protein CBFA2T1; zinc f 29.6 47 0.0016 21.0 3.0 18 56-79 16-33 (60)
124 3lju_X ARF-GAP with dual PH do 29.0 22 0.00077 32.2 1.9 31 55-85 34-67 (386)
125 1lv3_A Hypothetical protein YA 28.9 13 0.00043 24.7 0.1 24 56-79 10-36 (68)
126 4hc9_A Trans-acting T-cell-spe 27.0 36 0.0012 25.1 2.4 30 56-85 6-39 (115)
127 1wfp_A Zinc finger (AN1-like) 25.5 42 0.0014 22.5 2.2 20 56-79 26-45 (74)
128 3jyw_9 60S ribosomal protein L 24.7 35 0.0012 22.8 1.7 24 56-79 27-51 (72)
129 2vpb_A Hpygo1, pygopus homolog 24.4 10 0.00035 24.8 -1.0 31 56-87 9-40 (65)
130 1vq8_Z 50S ribosomal protein L 24.4 16 0.00054 25.3 -0.0 43 66-116 5-54 (83)
131 2b0o_E UPLC1; arfgap, structur 23.0 32 0.0011 29.8 1.7 31 55-85 42-75 (301)
132 1pft_A TFIIB, PFTFIIBN; N-term 22.8 31 0.001 20.9 1.1 24 56-79 6-31 (50)
133 1wg2_A Zinc finger (AN1-like) 22.8 32 0.0011 22.4 1.2 20 56-79 16-35 (64)
134 2yql_A PHD finger protein 21A; 21.9 55 0.0019 20.3 2.3 46 56-115 10-55 (56)
135 2lri_C Autoimmune regulator; Z 21.8 41 0.0014 21.9 1.6 45 56-114 13-57 (66)
136 3d00_A Tungsten formylmethanof 20.9 21 0.00072 28.9 0.1 24 54-79 162-185 (191)
137 3h0g_L DNA-directed RNA polyme 20.3 49 0.0017 21.5 1.7 24 56-79 22-45 (63)
No 1
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=4.9e-69 Score=512.82 Aligned_cols=294 Identities=73% Similarity=1.194 Sum_probs=251.4
Q ss_pred CCCCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHH
Q psy3092 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132 (347)
Q Consensus 53 ~~~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r 132 (347)
.....|.||||+|+|+||||.+|+|||+||||+|+++..|.|+++++|.+++..|++||+|||+||+++||++++||.+|
T Consensus 135 ~~~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r 214 (467)
T 3dzy_A 135 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214 (467)
T ss_dssp --CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCS
T ss_pred CCCCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccccccccCCCCCCCCCcHHHHHHHHHhccCCCCCCcc------ccchhHHHhhhhHHHHHHHHHHHHHHhhCCCC
Q psy3092 133 QRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQ------DIVNEQQATNICKATDKQLFQLVDWAKHIPHF 206 (347)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F 206 (347)
++.+.+.....+.+.....+.++++++++...+......... ..........++++.+.+++.+++|+|+||+|
T Consensus 215 ~~~k~r~~~~~~~~~~~~~~~~~~~ll~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~vVeWAK~iP~F 294 (467)
T 3dzy_A 215 QRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHF 294 (467)
T ss_dssp CCCCCCSCSSCTTSTTCSCSSCHHHHHHHHHC----------------------CCTTHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccccccccccccccCCCCchhhhhhhhhhhcccchhhhhhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 876554333333333344566788888776544332211110 01112234567888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHH
Q psy3092 207 TTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGC 286 (347)
Q Consensus 207 ~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~l 286 (347)
++|+.+||+.|||++|.+++++.++++++..++.+++++|..++++.....++..++++++.+++.+|++|++|++||++
T Consensus 295 ~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~~E~~l 374 (467)
T 3dzy_A 295 SELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGC 374 (467)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCHHHHHH
T ss_pred hcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999888999999999998888777777888899998999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 287 LRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 287 L~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
|+||+||+||+++|++.+.|+++|++++.+|++|++.++++++.||++||++||+||+|+
T Consensus 375 LkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi~ 434 (467)
T 3dzy_A 375 LRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIG 434 (467)
T ss_dssp HHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999885
No 2
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=1.3e-60 Score=450.13 Aligned_cols=287 Identities=33% Similarity=0.612 Sum_probs=213.0
Q ss_pred CCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCccc-ccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHh
Q psy3092 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA-CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~-C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~ 133 (347)
...|.||||+|+|+||||.+|+|||+||||++.++..|. | +++|.+++..|+.||+|||+||+++||++++||.+|+
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~ 127 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRM 127 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCC
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchhheecccc
Confidence 456999999999999999999999999999999998885 6 4689999999999999999999999999999999998
Q ss_pred hhhccccccccCCCCC-CCCCc---HHH----HHHHHHhc------------cCC---CCCCc----------------c
Q psy3092 134 RTKERDSNEVESTSGT-LIEMP---VER----ILEAEQRV------------DMK---QEPAD----------------Q 174 (347)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~---~~~----l~~~~~~~------------~~~---~~~~~----------------~ 174 (347)
+.+.+.....+..... ..... +.. +.++.... ... ..+.. .
T Consensus 128 ~~~~k~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~l~~ae~~~~~~ 207 (419)
T 3dzy_D 128 PQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFK 207 (419)
T ss_dssp TTTTGGGSTTTTTSTTTTSCSTTHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHCCSSSCCCEEECSHHHHHCCC------
T ss_pred cccccccccccccccccCCCCchhhHHHHHHHHHHhhhccCCccchhccccccCCCCCCCCcccccchhhhhcccccccc
Confidence 7544322111111000 00111 111 11111100 000 00000 0
Q ss_pred cc------chhH--HHhhhhHH-HHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecC
Q psy3092 175 DI------VNEQ--QATNICKA-TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP 245 (347)
Q Consensus 175 ~~------~~~~--~~~~~~~~-~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~ 245 (347)
.. ..+. .....+.. ....+..+|+|||++|+|.+|+.+||+.|||++|.+++++.++... ..++.++.+
T Consensus 208 ~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~--~~~~~~~~~ 285 (419)
T 3dzy_D 208 HITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLM--NKDGVLISE 285 (419)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGB--CSSEEEEGG
T ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCceeec
Confidence 00 0000 01111222 2345777999999999999999999999999999999999988443 446677776
Q ss_pred Cccc-cccchhh--cCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3092 246 GVTV-YRSSAHE--AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTR 322 (347)
Q Consensus 246 g~~i-~~~~~~~--~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~ 322 (347)
|..+ .++.... .+++++++.+ .+++.+|++|+||++||+||+||+||+||++||++...|+++|+++..+|++|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~i-~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~ 364 (419)
T 3dzy_D 286 GQGFMTREFLKSLRKPFGDFMEPK-FEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLK 364 (419)
T ss_dssp GTEEEEHHHHHSSSGGGSGGGHHH-HHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHhhhhhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6543 3332221 2355666654 4899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHhhhhhhhccC
Q psy3092 323 VNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 323 ~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
.++++.+.||++||++||+||+|+
T Consensus 365 ~~~p~~~~rf~kLLl~Lp~LR~i~ 388 (419)
T 3dzy_D 365 LNHPESSQLFAKLLQKMTDLRQIV 388 (419)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HhCCChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985
No 3
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=100.00 E-value=3.8e-41 Score=303.05 Aligned_cols=231 Identities=68% Similarity=0.999 Sum_probs=174.0
Q ss_pred HHHHhcCcchhHHHHHHhhhhccccccccCCCCCCCCCcHHHHHHHHHhccCCCCCC------ccccchhHHHhhhhHHH
Q psy3092 116 QKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPA------DQDIVNEQQATNICKAT 189 (347)
Q Consensus 116 ~KCl~vGM~~~~vq~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 189 (347)
-||++|||++++||.+|++.+.+.....+.+.....+.+++++++++...+...... .........+..+++++
T Consensus 13 ~kCl~vGMkkeaVq~~R~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 92 (282)
T 1lbd_A 13 GLVPRGSHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAA 92 (282)
T ss_dssp --------------------------------CCTTTSCHHHHHHHHHTTCCCHHHHHHHTTCCCSSCTTCHHHHHHHHH
T ss_pred CCcCccCCcHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccccCCCccccHHHHHHHHH
Confidence 489999999999999999877654433444444455678999998887655422110 11122334678999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHH
Q psy3092 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269 (347)
Q Consensus 190 ~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 269 (347)
..+++.+++|||.||+|..|+.+||+.|||++|.+++++..+++++...+.+++++|..++++.....++..++++++.+
T Consensus 93 ~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (282)
T 1lbd_A 93 DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTE 172 (282)
T ss_dssp HHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999998887776666777888888889
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 270 l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
++.+|++|++|++||++|+||+||||+++|+++...|+++|++++.+|.+|+..++++++.||++||++||.||+++
T Consensus 173 ~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~ 249 (282)
T 1lbd_A 173 LVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIG 249 (282)
T ss_dssp HHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999875
No 4
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=100.00 E-value=3.2e-38 Score=230.73 Aligned_cols=84 Identities=92% Similarity=1.595 Sum_probs=75.7
Q ss_pred CCCCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHH
Q psy3092 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEER 132 (347)
Q Consensus 53 ~~~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r 132 (347)
.+...|.||||+|+|+||||.+|+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|
T Consensus 8 ~~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 87 (93)
T 2han_A 8 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEER 87 (93)
T ss_dssp --CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC
T ss_pred CCCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhcc
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhh
Q psy3092 133 QRTK 136 (347)
Q Consensus 133 ~~~~ 136 (347)
++.+
T Consensus 88 ~~~~ 91 (93)
T 2han_A 88 QGIH 91 (93)
T ss_dssp ----
T ss_pred Cccc
Confidence 8654
No 5
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=1.3e-37 Score=229.89 Aligned_cols=91 Identities=84% Similarity=1.538 Sum_probs=71.9
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||++|+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|++.
T Consensus 4 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 83 (99)
T 1ynw_B 4 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 83 (99)
T ss_dssp -CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC------
T ss_pred CCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccccccccCC
Q psy3092 136 KERDSNEVEST 146 (347)
Q Consensus 136 ~~~~~~~~~~~ 146 (347)
+.+++.+.+++
T Consensus 84 ~~~~~~~~~~~ 94 (99)
T 1ynw_B 84 KDRNENEVEST 94 (99)
T ss_dssp -----------
T ss_pred cccCcccccCC
Confidence 77655444443
No 6
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=221.20 Aligned_cols=79 Identities=59% Similarity=1.283 Sum_probs=76.0
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~ 134 (347)
..|.||||+|+|+||||++|+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|++
T Consensus 8 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 86 (89)
T 2ebl_A 8 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGP 86 (89)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCC
T ss_pred CCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999998775
No 7
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=100.00 E-value=2.8e-37 Score=221.79 Aligned_cols=79 Identities=86% Similarity=1.641 Sum_probs=76.1
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~ 134 (347)
..|.||||+|+|+||||.+|+|||+||||++.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|++
T Consensus 6 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 6 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp EECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred CCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999998774
No 8
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=216.86 Aligned_cols=77 Identities=64% Similarity=1.363 Sum_probs=73.2
Q ss_pred cCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHh
Q psy3092 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133 (347)
Q Consensus 57 ~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~ 133 (347)
.|.||||+|+|+||||.+|+|||+||||++.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+||
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998875
No 9
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=100.00 E-value=1.3e-36 Score=219.09 Aligned_cols=81 Identities=53% Similarity=1.227 Sum_probs=73.6
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||.||+|||+||||++.++..|.|..+++|.|++..|+.||+|||+||+++||++++||.+|++.
T Consensus 5 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 84 (86)
T 1dsz_A 5 KPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK 84 (86)
T ss_dssp -CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC----
T ss_pred CCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred h
Q psy3092 136 K 136 (347)
Q Consensus 136 ~ 136 (347)
+
T Consensus 85 k 85 (86)
T 1dsz_A 85 K 85 (86)
T ss_dssp -
T ss_pred c
Confidence 4
No 10
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=100.00 E-value=3.1e-36 Score=215.87 Aligned_cols=78 Identities=46% Similarity=1.080 Sum_probs=68.5
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~ 133 (347)
..|.||||+|+|+||||.||+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|.
T Consensus 5 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred CcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999874
No 11
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=1.1e-33 Score=247.63 Aligned_cols=196 Identities=68% Similarity=1.088 Sum_probs=173.2
Q ss_pred CCCCcHHHHHHHHHhccCCCCCCcc--ccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3092 150 LIEMPVERILEAEQRVDMKQEPADQ--DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227 (347)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~ 227 (347)
..+.+++++++++...+.. ..... ...+...+..++++....++.+++|||++|+|..|+.+||+.|||++|.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~ 84 (235)
T 2nxx_A 6 QADMPLERIIEAEKRVECN-DPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLI 84 (235)
T ss_dssp --CCCHHHHHHHHHHTCCC-CCCCBCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCC-ccccccccCccccHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHH
Confidence 3467788999988776654 22111 11233567899999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q psy3092 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVE 307 (347)
Q Consensus 228 l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~ 307 (347)
+..+|+++...+.+++++|..++++.....++..++++++.+++.+|++|++|++||++|+||+|||||++|+++...++
T Consensus 85 L~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~ 164 (235)
T 2nxx_A 85 AAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVE 164 (235)
T ss_dssp HHHHHTTSSSSSSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHH
T ss_pred HHHHHhcccCCCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence 99999999888999999999998877666667778888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 308 MLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 308 ~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
++|+++..+|.+|+..++++++.||++||++||.||+++
T Consensus 165 ~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~ 203 (235)
T 2nxx_A 165 MLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIG 203 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999875
No 12
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=100.00 E-value=1.8e-33 Score=254.89 Aligned_cols=223 Identities=27% Similarity=0.422 Sum_probs=163.7
Q ss_pred cchhHHHHHHhhhhcccccccc-CCCCCC--CCCcHHHHHHHHHhccCCCCC---Ccc-------ccchhHHHhhhhHHH
Q psy3092 123 MKREAVQEERQRTKERDSNEVE-STSGTL--IEMPVERILEAEQRVDMKQEP---ADQ-------DIVNEQQATNICKAT 189 (347)
Q Consensus 123 M~~~~vq~~r~~~~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~ 189 (347)
|++++||.+|.+.++++..... ...... .+..++.++++.......... ... .......+..++++.
T Consensus 1 M~rEaVr~~R~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T 1xdk_B 1 MSKESVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELA 80 (303)
T ss_dssp -----------------------------CCTHHHHHHHHHHHHHHSCCSSSSCCBCCCTTCSSCCSCCHHHHHHHHHHH
T ss_pred CCHHHHhhccccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHhCccHhhhcccCCCCCccccccchHHHHHHHHHHH
Confidence 8899999999875543211110 000000 112245566665443221110 000 001123578899999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHH
Q psy3092 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTE 269 (347)
Q Consensus 190 ~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 269 (347)
...++.+|+|||.+|+|..|+.+||+.|||++|.+++++..++++....+.+++++|..+.++.....++.++++.++ +
T Consensus 81 ~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~i~-~ 159 (303)
T 1xdk_B 81 TKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF-T 159 (303)
T ss_dssp HHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTCBEEEHHHHHHTTTGGGHHHHH-H
T ss_pred HHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccCCeEEecCCceecHHHHhhcCcHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999888888999999988877776667777777765 7
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 270 LVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 270 l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
++.+|++|++|++||+||+||+||+||++||++...|+++|+++..+|.+|+..++++++.||++||++||.||+|+
T Consensus 160 ~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~l~ 236 (303)
T 1xdk_B 160 FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSIS 236 (303)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
No 13
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=100.00 E-value=1.4e-33 Score=248.00 Aligned_cols=196 Identities=70% Similarity=1.078 Sum_probs=168.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCCcc------ccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHH
Q psy3092 151 IEMPVERILEAEQRVDMKQEPADQ------DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224 (347)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~ 224 (347)
.+.+++++++++...+........ ...+...++.++++++.+++.+++|+|++|+|+.|+.+||+.|||++|.+
T Consensus 6 ~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e 85 (240)
T 2p1t_A 6 EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE 85 (240)
T ss_dssp -CCCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHH
Confidence 456788888888766654322111 11233457889999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHH
Q psy3092 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304 (347)
Q Consensus 225 ~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~ 304 (347)
++++..+++++..++++++++|..++++.....++..++++++.+++.+|++|++|++||++|+||+||||+++|+++..
T Consensus 86 ~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~ 165 (240)
T 2p1t_A 86 LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 165 (240)
T ss_dssp HHHHHHHHHTTTSSSEEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHH
T ss_pred HHHHHHHHhhccCCCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHH
Confidence 99999999998888999999998888776666677778888888999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 305 ~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
.++++|+++..+|++|+..++++++.||++||++||.||+++
T Consensus 166 ~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~~ 207 (240)
T 2p1t_A 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIG 207 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999875
No 14
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=100.00 E-value=4.8e-36 Score=219.63 Aligned_cols=83 Identities=52% Similarity=1.119 Sum_probs=74.5
Q ss_pred CCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcc-cccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHh
Q psy3092 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY-ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~-~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~ 133 (347)
...|.||||+|+|+||||.+|+|||+||||+|.++..| .|..+++|.|++..|+.||+|||+||+++||++++||.+|+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 86 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRI 86 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC-
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcC
Confidence 35699999999999999999999999999999999999 59999999999999999999999999999999999999887
Q ss_pred hhhc
Q psy3092 134 RTKE 137 (347)
Q Consensus 134 ~~~~ 137 (347)
+...
T Consensus 87 ~~~~ 90 (94)
T 1a6y_A 87 PKRE 90 (94)
T ss_dssp ----
T ss_pred cCch
Confidence 6543
No 15
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=1.8e-35 Score=214.28 Aligned_cols=78 Identities=56% Similarity=1.226 Sum_probs=74.6
Q ss_pred cCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhh
Q psy3092 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134 (347)
Q Consensus 57 ~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~ 134 (347)
.|.||||+|+|+||||.||+|||+||||+|.++..|.|..+++|.|++..|+.||+|||+||+++||++++||.++..
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~ 79 (89)
T 1cit_A 2 RCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLK 79 (89)
T ss_dssp CCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGT
T ss_pred CCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeeccccc
Confidence 499999999999999999999999999999999999999999999999999999999999999999999999987654
No 16
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=100.00 E-value=2.4e-35 Score=223.59 Aligned_cols=81 Identities=47% Similarity=0.971 Sum_probs=70.5
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||.+|+|||+||||++.++..|.|+.+++|.+++..|+.||+|||+||+++||++++||.+|+..
T Consensus 30 ~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k 109 (117)
T 4hn5_A 30 KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 109 (117)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC--------
T ss_pred CcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhccccccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred h
Q psy3092 136 K 136 (347)
Q Consensus 136 ~ 136 (347)
.
T Consensus 110 ~ 110 (117)
T 4hn5_A 110 G 110 (117)
T ss_dssp -
T ss_pred c
Confidence 3
No 17
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=5.9e-36 Score=220.61 Aligned_cols=81 Identities=51% Similarity=1.027 Sum_probs=77.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||++|+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|++.
T Consensus 5 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 84 (98)
T 1lo1_A 5 RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRG 84 (98)
T ss_dssp CEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTT
T ss_pred CCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccccC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred h
Q psy3092 136 K 136 (347)
Q Consensus 136 ~ 136 (347)
.
T Consensus 85 ~ 85 (98)
T 1lo1_A 85 G 85 (98)
T ss_dssp C
T ss_pred c
Confidence 4
No 18
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=100.00 E-value=5.6e-35 Score=213.24 Aligned_cols=83 Identities=46% Similarity=0.959 Sum_probs=75.0
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
.+|.||||+|+|+||||.+|+|||+||||++.++..|.|..+++|.+++..|+.|++|||+||+++||++++||.+|+..
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~ 82 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 82 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC---
T ss_pred CcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hcc
Q psy3092 136 KER 138 (347)
Q Consensus 136 ~~~ 138 (347)
..+
T Consensus 83 ~~~ 85 (90)
T 3g9m_A 83 GIQ 85 (90)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 19
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=100.00 E-value=4.3e-35 Score=220.66 Aligned_cols=79 Identities=38% Similarity=1.014 Sum_probs=74.1
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~ 134 (347)
..|.||||+|+|+||||.+|+|||+||||++.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|+.
T Consensus 7 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~ 85 (110)
T 1kb2_A 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEV 85 (110)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHH
T ss_pred CCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999976665543
No 20
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=100.00 E-value=6.4e-35 Score=217.38 Aligned_cols=82 Identities=49% Similarity=1.133 Sum_probs=76.7
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCC--cccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL--SYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQ 133 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~--~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~ 133 (347)
..|.||||+|+|+||||+||+|||+||||++..+. .|.|..+++|.|++..|+.|++|||+||+++||++++||.+++
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~ 81 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 81 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhh
Confidence 46999999999999999999999999999999875 8999999999999999999999999999999999999999887
Q ss_pred hhhc
Q psy3092 134 RTKE 137 (347)
Q Consensus 134 ~~~~ 137 (347)
+..+
T Consensus 82 ~~~k 85 (103)
T 2nll_B 82 RLAK 85 (103)
T ss_dssp HHHH
T ss_pred hHHh
Confidence 6543
No 21
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=100.00 E-value=1.1e-32 Score=245.47 Aligned_cols=196 Identities=49% Similarity=0.829 Sum_probs=169.5
Q ss_pred CCCcHHHHHHHHHhccCCCCCCc-----cccc-h---hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q psy3092 151 IEMPVERILEAEQRVDMKQEPAD-----QDIV-N---EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAG 221 (347)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~-----~~~~-~---~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~ 221 (347)
.+.+++++++++...++...... .... . ...+..++++....++.+++|||++|+|..|+.+||+.|||++
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 83 (264)
T 1g2n_A 4 QELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGS 83 (264)
T ss_dssp CCCCHHHHHHHHHCCCCCCCCCCSBCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCccccccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHh
Confidence 45678888888877665222111 0011 1 2578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccC----CCc--------------eEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhH
Q psy3092 222 WNELLIASFSHRSISV----KDG--------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTE 283 (347)
Q Consensus 222 ~~~~~~l~~a~~s~~~----~~~--------------~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E 283 (347)
|.+++++..+++++.. .+. +++++|..++++.....++.+++++.+.+++.+|++|++|++|
T Consensus 84 w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E 163 (264)
T 1g2n_A 84 WNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAE 163 (264)
T ss_dssp HHHHHHHHHHHHHGGGSCCC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHccccccccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999877 666 8899999888877766777788878888999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 284 LGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 284 ~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
|++|+||+|||||++||++...|+++|+++..+|++|+..++++++.||++||++||.||+++
T Consensus 164 ~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~ 226 (264)
T 1g2n_A 164 YVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSIS 226 (264)
T ss_dssp HHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 22
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=100.00 E-value=1.6e-32 Score=241.48 Aligned_cols=195 Identities=30% Similarity=0.507 Sum_probs=166.6
Q ss_pred CCCcHHHHHHHHHhccCCCCCC----ccccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy3092 151 IEMPVERILEAEQRVDMKQEPA----DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELL 226 (347)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~ 226 (347)
.+.++++++......++..... .........+..++++....++.+++|||++|+|..|+.+||+.|||++|.+++
T Consensus 15 ~~~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~ 94 (244)
T 2e2r_A 15 AKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEIL 94 (244)
T ss_dssp --CCCCHHHHHHHHTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHH
Confidence 4566677777776655432110 111123356889999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHH
Q psy3092 227 IASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306 (347)
Q Consensus 227 ~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i 306 (347)
++..+++++..++.+++++|..+.++.....++.++++.+. +++.+|++|++|++||++|+||+|||||++|+++...|
T Consensus 95 ~L~~a~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v 173 (244)
T 2e2r_A 95 ILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAV 173 (244)
T ss_dssp HHHHHHHTTTSSSCEEEETTEEECHHHHHHTTCHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHH
T ss_pred HHHHHHHhcccCCeEEecCCEeecHHHhhhccHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHH
Confidence 99999999998899999999877766555566677776654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 307 ~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
+++|+++..+|++|+..++++++.||++||++||.||+++
T Consensus 174 ~~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~ 213 (244)
T 2e2r_A 174 QKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTS 213 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 23
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=100.00 E-value=3.9e-35 Score=221.39 Aligned_cols=80 Identities=60% Similarity=1.249 Sum_probs=76.6
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||.+|+|||+||||+|..+..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+|++.
T Consensus 10 ~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~ 89 (113)
T 2a66_A 10 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 89 (113)
T ss_dssp CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCS
T ss_pred CCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999988753
No 24
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=2.6e-32 Score=240.60 Aligned_cols=194 Identities=27% Similarity=0.462 Sum_probs=163.1
Q ss_pred CCcHHHHHHHHHhccCCCCCC----ccccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3092 152 EMPVERILEAEQRVDMKQEPA----DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLI 227 (347)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~ 227 (347)
++++++++.+....++..... ..+......+..++++..+.++.+++|||++|+|..|+.+||+.|||++|.++++
T Consensus 16 ~~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~l 95 (248)
T 3k6p_A 16 QGPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLV 95 (248)
T ss_dssp TSCTHHHHHHHHHHSCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHH
Confidence 445677777777666532111 1112233568899999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHH
Q psy3092 228 ASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVE 307 (347)
Q Consensus 228 l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~ 307 (347)
+..+++++..++.+++++|..+.++.....++.++++. +.+++.+|++|++|++||++|+||+|||||++|+++...|+
T Consensus 96 L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve 174 (248)
T 3k6p_A 96 LGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAA-LLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVE 174 (248)
T ss_dssp HHHHHHHTTSSSCEEEETTEEECHHHHHHTTTTTHHHH-HHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHH
T ss_pred HHHHHHccCCCCeEEeCCCcccChhhhhhccHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 99999999888999999999888766555555555544 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC----CCchHHHHHHhhhhhhhccC
Q psy3092 308 MLREKVYTSLEEYTRVNHS----EEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 308 ~~r~~~~~~L~~y~~~~~~----~~~~Rf~~LL~ll~~lr~i~ 346 (347)
++|+++..+|.+|+..+++ +++.||++||++||.||+++
T Consensus 175 ~lq~~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~ 217 (248)
T 3k6p_A 175 QLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTA 217 (248)
T ss_dssp HHHHHHHHHHHHHHHTC----CCCCCH-HHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 89999999999999999885
No 25
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=2.5e-32 Score=240.09 Aligned_cols=168 Identities=27% Similarity=0.467 Sum_probs=154.4
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCc-eEecCCccccccchhh
Q psy3092 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG-ILLAPGVTVYRSSAHE 256 (347)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~-~~~~~g~~i~~~~~~~ 256 (347)
....+..++++....++.+++|||++|+|..|+.+||+.|||++|.+++++..+++++..++. +++++|..+.++....
T Consensus 34 ~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~~ 113 (243)
T 3ltx_A 34 KVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWST 113 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhcc
Confidence 446688999999999999999999999999999999999999999999999999998877654 7889998888776665
Q ss_pred cCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q psy3092 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336 (347)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL 336 (347)
.++.++++.+. +++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||
T Consensus 114 ~~~~~~~~~i~-~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL 192 (243)
T 3ltx_A 114 VEMTEIFEQVA-AVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAVL 192 (243)
T ss_dssp TTCHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHHH
T ss_pred cCHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 66777777655 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+++
T Consensus 193 ~~Lp~Lr~l~ 202 (243)
T 3ltx_A 193 LLLTHIRQAG 202 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 26
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=100.00 E-value=2e-34 Score=220.43 Aligned_cols=80 Identities=53% Similarity=1.088 Sum_probs=76.4
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRT 135 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~~ 135 (347)
..|.||||+|+|+||||++|+|||+||||+|.++..|.|+.+++|.|++..|+.||+|||+||+++||++++||.+++..
T Consensus 9 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~~ 88 (119)
T 2han_B 9 ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCA 88 (119)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHHH
T ss_pred CcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999877653
No 27
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=2.4e-34 Score=214.49 Aligned_cols=79 Identities=42% Similarity=0.880 Sum_probs=70.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhHHHHHHhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 134 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~vq~~r~~ 134 (347)
..|.||||+|+|+||||.+|+|||+||||+|..+..|.|+.+++|.|++..|+.||+|||+||+++||++++++..+..
T Consensus 8 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~~ 86 (105)
T 1r4i_A 8 KTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLG 86 (105)
T ss_dssp CBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-------
T ss_pred CCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhcccc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999998876643
No 28
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=3.7e-32 Score=244.07 Aligned_cols=196 Identities=47% Similarity=0.793 Sum_probs=155.2
Q ss_pred CCCcHHHHHHHHHhccCCCCCC-----------ccccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q psy3092 151 IEMPVERILEAEQRVDMKQEPA-----------DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLR 219 (347)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk 219 (347)
.+.+++++++++...+...... .........+..+++++...++.+++|||++|+|..|+.+||+.|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk 86 (279)
T 1hg4_A 7 RDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLK 86 (279)
T ss_dssp --CCHHHHHHHHHHHHHHSTTCCCCCBCCCTTCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcccccccccccccccCCCcCCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHH
Confidence 4667888888776544321110 00112234688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCc--------eEecCCcccc-------------------ccchhhcCchhhHHhhHHHHHH
Q psy3092 220 AGWNELLIASFSHRSISVKDG--------ILLAPGVTVY-------------------RSSAHEAGVGGIFDRVLTELVS 272 (347)
Q Consensus 220 ~~~~~~~~l~~a~~s~~~~~~--------~~~~~g~~i~-------------------~~~~~~~~~~~~~~~~~~~l~~ 272 (347)
++|.+++++..||+++...+. +++++|.++. ++.....++..++++++.+++.
T Consensus 87 ~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (279)
T 1hg4_A 87 AAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSV 166 (279)
T ss_dssp HHHHHHHHHHHHHHTTTTC-------------------------CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhhhccCcccccccccccccCccccccccccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHH
Confidence 999999999999998876554 4555554322 2222334667778888889999
Q ss_pred HHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 273 ~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|++|+..++++++.||++||++||.||+++
T Consensus 167 ~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~ 240 (279)
T 1hg4_A 167 KMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSIS 240 (279)
T ss_dssp HHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 29
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=100.00 E-value=5.1e-32 Score=231.06 Aligned_cols=168 Identities=27% Similarity=0.450 Sum_probs=153.4
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhc
Q psy3092 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257 (347)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~ 257 (347)
....+..+++.....+..+++|||++|+|.+|+.+||+.|+|++|.+++++..++++....+.+.+++|..+.++.....
T Consensus 18 ~~~~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (199)
T 3cqv_A 18 GHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSM 97 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETTTTEEECTTSCEEEHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCCCCeEEecCCCeecHHHHHhc
Confidence 34567888888999999999999999999999999999999999999999999987766677788999998887776666
Q ss_pred CchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q psy3092 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ 337 (347)
++.++++.+ .+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||+
T Consensus 98 ~~~~~~~~i-~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~ 176 (199)
T 3cqv_A 98 GAGDLLNSM-FEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLL 176 (199)
T ss_dssp TCCHHHHHH-HHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CcHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 677777665 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccC
Q psy3092 338 RLPSLRSIE 346 (347)
Q Consensus 338 ll~~lr~i~ 346 (347)
+||+||+|+
T Consensus 177 ~L~~Lr~l~ 185 (199)
T 3cqv_A 177 KLPDLRSLN 185 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999886
No 30
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=100.00 E-value=5.8e-32 Score=236.87 Aligned_cols=166 Identities=28% Similarity=0.497 Sum_probs=155.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..++++....++.+|+|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+++++|..+.++.....++
T Consensus 44 ~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~ 123 (236)
T 1fcy_A 44 GLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 123 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHHHcCc
Confidence 45788999999999999999999999999999999999999999999999999998888889999999888777666677
Q ss_pred hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhh
Q psy3092 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339 (347)
Q Consensus 260 ~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll 339 (347)
.++++++. +++.+|++|++|++||++|+||+||+||++|+++...|+++|+++..+|++|+..++++++.||++||++|
T Consensus 124 ~~~~~~i~-~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L 202 (236)
T 1fcy_A 124 GPLTDLVF-AFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKI 202 (236)
T ss_dssp GGGHHHHH-HHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHh
Confidence 77777766 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy3092 340 PSLRSIE 346 (347)
Q Consensus 340 ~~lr~i~ 346 (347)
|.||+|+
T Consensus 203 ~~Lr~l~ 209 (236)
T 1fcy_A 203 TDLRGIS 209 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 31
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.98 E-value=2.7e-31 Score=237.40 Aligned_cols=221 Identities=23% Similarity=0.378 Sum_probs=158.4
Q ss_pred cchhHHHHHHhhhhccccc-----cccCCCCCCCCCcHHHHHHHHHhccCCC--CCCcc---------ccchhHHHhhhh
Q psy3092 123 MKREAVQEERQRTKERDSN-----EVESTSGTLIEMPVERILEAEQRVDMKQ--EPADQ---------DIVNEQQATNIC 186 (347)
Q Consensus 123 M~~~~vq~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~ 186 (347)
|.+|+||.+|.+.++++.. ............-+..++.+........ ..... .......+..++
T Consensus 1 M~kE~Vr~dr~~~~r~~~~~~~~~~~~~~~~~~~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 1ovl_A 1 MVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFY 80 (271)
T ss_dssp -----------------------------------CHHHHHHHHHHHTSCCTTSCBCTTCCCC--------CHHHHHHHH
T ss_pred CCccccccCccccCCCCCCCCCCCcccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhccCCCCCcccCcchHHHHHHHH
Confidence 8899999988765432211 0000101111223566777776544322 10000 011224577889
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCchhhHHhh
Q psy3092 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRV 266 (347)
Q Consensus 187 ~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 266 (347)
++....+..+++|||++|+|..|+.+||+.|||++|.+++++..+++++..++.+++++|..++++.. ..++.++++.+
T Consensus 81 ~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~-~~~~~~~~~~l 159 (271)
T 1ovl_A 81 DLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQC-VRGFGEWIDSI 159 (271)
T ss_dssp HHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTTTEEECTTSBEEEHHHH-TTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEeeCCeeecHHHH-HhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888889999988776543 34566677665
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHhhhhhhhc
Q psy3092 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN--HSEEPGRFAKLLLRLPSLRS 344 (347)
Q Consensus 267 ~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~--~~~~~~Rf~~LL~ll~~lr~ 344 (347)
. +++.+|++|++|++||+||+||+|||| .+|+++...|+++|+++..+|.+|+..+ +++++.||++||++||.||+
T Consensus 160 ~-~~~~~l~~L~ld~~E~~lLkAivL~~~-~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L~~Lr~ 237 (271)
T 1ovl_A 160 V-EFSSNLQNMNIDISAFSCIAALAMVTE-RHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRT 237 (271)
T ss_dssp H-HHHHHHHTTCCCHHHHHHHHHHHHSSC-CTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHH
Confidence 5 899999999999999999999999996 8999999999999999999999999876 45889999999999999998
Q ss_pred cC
Q psy3092 345 IE 346 (347)
Q Consensus 345 i~ 346 (347)
|+
T Consensus 238 l~ 239 (271)
T 1ovl_A 238 LC 239 (271)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 32
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=233.88 Aligned_cols=166 Identities=27% Similarity=0.468 Sum_probs=139.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..+++.....+..+++|||.+|+|..|+.+||+.|||++|.+++++.+++++....+.+.+++|..+..+.....++
T Consensus 65 ~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 144 (245)
T 3n00_A 65 EIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGM 144 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCSCC--------------CCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCeecHHHHhhccH
Confidence 45778888888999999999999999999999999999999999999999998755556778889999888777666667
Q ss_pred hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhh
Q psy3092 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339 (347)
Q Consensus 260 ~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll 339 (347)
.++++.+. +++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||++|
T Consensus 145 ~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~L 223 (245)
T 3n00_A 145 GDLLSAMF-DFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKL 223 (245)
T ss_dssp HHHHHHHH-HHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHH
T ss_pred HHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77776655 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy3092 340 PSLRSIE 346 (347)
Q Consensus 340 ~~lr~i~ 346 (347)
|+||+|+
T Consensus 224 p~LR~l~ 230 (245)
T 3n00_A 224 PDLRTLN 230 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 33
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.97 E-value=3.5e-31 Score=235.42 Aligned_cols=166 Identities=31% Similarity=0.528 Sum_probs=154.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..+++.....++.+++|||++|+|..|+.+||+.|||++|.+++++..++++....+.+++++|..+.++.....++
T Consensus 68 ~~~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~ 147 (266)
T 3kmr_A 68 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhhcch
Confidence 34788999999999999999999999999999999999999999999999999998888889999999888777666667
Q ss_pred hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhh
Q psy3092 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339 (347)
Q Consensus 260 ~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll 339 (347)
+.+.+.+. +++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||++|
T Consensus 148 ~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L 226 (266)
T 3kmr_A 148 GPLTDLVF-AFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKI 226 (266)
T ss_dssp GGGHHHHH-HHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHh
Confidence 77766655 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy3092 340 PSLRSIE 346 (347)
Q Consensus 340 ~~lr~i~ 346 (347)
|.||+|+
T Consensus 227 p~Lr~i~ 233 (266)
T 3kmr_A 227 TDLRSIS 233 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 34
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.97 E-value=4.7e-31 Score=231.84 Aligned_cols=166 Identities=28% Similarity=0.494 Sum_probs=151.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccC--CCceEecCCccccccchhhc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV--KDGILLAPGVTVYRSSAHEA 257 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~--~~~~~~~~g~~i~~~~~~~~ 257 (347)
..+..++++....++.+++|||++|+|.+|+.+||+.|||++|.+++++..+++++.. .+.+++++|..++.+.....
T Consensus 46 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~ 125 (243)
T 2iz2_A 46 DLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLL 125 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhc
Confidence 4688999999999999999999999999999999999999999999999999998753 57778899988887765555
Q ss_pred CchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q psy3092 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ 337 (347)
++..+. +.+.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||+
T Consensus 126 ~~~~~~-~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~ 204 (243)
T 2iz2_A 126 GVPQLG-DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVN 204 (243)
T ss_dssp STTSSH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHT
T ss_pred chHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHH
Confidence 554444 4567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccC
Q psy3092 338 RLPSLRSIE 346 (347)
Q Consensus 338 ll~~lr~i~ 346 (347)
+||.||+++
T Consensus 205 ~L~~Lr~l~ 213 (243)
T 2iz2_A 205 ILPEIHAMA 213 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 35
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.97 E-value=4.7e-31 Score=231.52 Aligned_cols=168 Identities=39% Similarity=0.635 Sum_probs=154.3
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
..++.++++++..+++.+++|+|+||+|+.|+.+||+.|||++|.+++++..++++...++.+++++|..++.+.....+
T Consensus 40 ~~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~~~~~~~ 119 (237)
T 1pzl_A 40 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAE 119 (237)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESSCGGGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCccchhhhh
Confidence 35678999999999999999999999999999999999999999999999999999888888889999888766554445
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
+..++++++.+++.+|++|++|++||++|+||+||+|+.+|+++...++++|+++..+|++||..++++++.||++||++
T Consensus 120 ~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~ 199 (237)
T 1pzl_A 120 MSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLL 199 (237)
T ss_dssp GHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 56677788889999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
+|.||+++
T Consensus 200 l~~lr~~~ 207 (237)
T 1pzl_A 200 LPTLQSIT 207 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 36
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.97 E-value=5.2e-31 Score=233.65 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=159.7
Q ss_pred HHHHHHHHHhccCCCCCCccccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q psy3092 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRS 234 (347)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s 234 (347)
+..++.++...................+..++++..++++.+++|||++|+|.+|+.+||+.|||++|.+++++..+|++
T Consensus 17 ~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs 96 (261)
T 3mnp_A 17 VSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRS 96 (261)
T ss_dssp HHHHHHHSCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555443322222222233446688999999999999999999999999999999999999999999999999998
Q ss_pred ccCCC--ceEecCCccccccchhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcC-CCCCCCCHHHHHHHHH
Q psy3092 235 ISVKD--GILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLRE 311 (347)
Q Consensus 235 ~~~~~--~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p-~~~~l~~~~~i~~~r~ 311 (347)
+..++ .+++++|..+.++.....++.++++.+ .+++.+|++|++|++||++|+||+|||| +++|+++...|+++|+
T Consensus 97 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~ 175 (261)
T 3mnp_A 97 YRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHM-LFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRM 175 (261)
T ss_dssp HHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHH-HHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHH
T ss_pred ccCCCCCEEEecCCcccchhhhhhhhHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHH
Confidence 77654 468899988887666555666666554 4899999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCC---CchHHHHHHhhhhhhhccC
Q psy3092 312 KVYTSLEEYTRVNHSE---EPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 312 ~~~~~L~~y~~~~~~~---~~~Rf~~LL~ll~~lr~i~ 346 (347)
++..+|.+|+..++++ ++.||++||++||.||+++
T Consensus 176 ~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l~ 213 (261)
T 3mnp_A 176 TYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVV 213 (261)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999998884 5899999999999999875
No 37
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.97 E-value=7e-31 Score=233.84 Aligned_cols=167 Identities=26% Similarity=0.438 Sum_probs=155.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..+++.....+..+|+|||++|+|..|+.+||+.|||++|.+++++..|+++....+.+++++|..+.++.....+
T Consensus 69 ~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~~~ 148 (267)
T 3ilz_A 69 LEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGG 148 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHHHhccC
Confidence 35688999999999999999999999999999999999999999999999999999888888999999988887776667
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
++.+.+.+. +++.+|++|++|++||++|+||+|||||++||++...|+++|+++..+|++|+..++++++.||++||++
T Consensus 149 ~~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~ 227 (267)
T 3ilz_A 149 LGVVSDAIF-ELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMK 227 (267)
T ss_dssp TTHHHHHHH-HHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 777766654 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
||+||+|+
T Consensus 228 Lp~Lr~l~ 235 (267)
T 3ilz_A 228 VTDLRMIG 235 (267)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999885
No 38
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.97 E-value=9.7e-31 Score=234.86 Aligned_cols=168 Identities=25% Similarity=0.394 Sum_probs=152.8
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..++++....+..+|+|||.+|+|..|+.+||+.|||++|.+++++..|+++....+.+.+++|..+.++.....+
T Consensus 87 ~~~~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~~~~~~g 166 (283)
T 3ipq_A 87 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAG 166 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHHHHHHcC
Confidence 34578899999999999999999999999999999999999999999999999888777788899999988877766566
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
+...+...+.+++.+|++|++|++||+||+||+|||||++||++...|+++|+++..+|.+|+..++++++.||++||++
T Consensus 167 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~ 246 (283)
T 3ipq_A 167 LQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMK 246 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 65333344559999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
||+||+|+
T Consensus 247 Lp~Lr~l~ 254 (283)
T 3ipq_A 247 LVSLRTLS 254 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 39
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.97 E-value=1.1e-30 Score=229.63 Aligned_cols=165 Identities=21% Similarity=0.375 Sum_probs=150.3
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..+++.....++.+++|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+.+ +|..+.++.....+
T Consensus 49 ~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~ 127 (244)
T 1nq7_A 49 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKALG 127 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhhcC
Confidence 34577888889999999999999999999999999999999999999999999998777777888 88877776666566
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
+.++++.+. +++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|++|+..++++++ ||++||++
T Consensus 128 ~~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~ 205 (244)
T 1nq7_A 128 SDDLVNEAF-DFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAK 205 (244)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHT
T ss_pred hHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHH
Confidence 777777655 8999999999999999999999999999999999999999999999999999999999888 99999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
||.||+|+
T Consensus 206 L~~Lr~l~ 213 (244)
T 1nq7_A 206 IPTITAVC 213 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 40
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.97 E-value=1.5e-30 Score=230.37 Aligned_cols=165 Identities=20% Similarity=0.353 Sum_probs=146.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecC-CccccccchhhcCc
Q psy3092 181 QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP-GVTVYRSSAHEAGV 259 (347)
Q Consensus 181 ~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~-g~~i~~~~~~~~~~ 259 (347)
.+..++++....++.+|+|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+.+++ |..+.++.....++
T Consensus 57 ~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (254)
T 3b0t_A 57 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGH 136 (254)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHHHHcCC
Confidence 47888999999999999999999999999999999999999999999999998766666677775 55555555544566
Q ss_pred h-hhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHHH
Q psy3092 260 G-GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKLL 336 (347)
Q Consensus 260 ~-~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~--~~~~Rf~~LL 336 (347)
. .+.+. +.+++.+|++|++|++||+||+||+|||||++|+++...|+++|+++..+|++|+..+++ +++.||++||
T Consensus 137 ~~~~~~~-l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL 215 (254)
T 3b0t_A 137 SLELIEP-LIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMI 215 (254)
T ss_dssp CHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHH
Confidence 5 45554 558999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 216 ~~L~~Lr~l~ 225 (254)
T 3b0t_A 216 QKLADLRSLN 225 (254)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 9999999885
No 41
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.97 E-value=1.3e-30 Score=231.99 Aligned_cols=165 Identities=24% Similarity=0.357 Sum_probs=152.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..++++....++.+|+|||++|+|..|+.+||+.|||++|.+++++..++++....+.+++++|..+.++.....++
T Consensus 68 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~ 147 (266)
T 2r40_D 68 MPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGM 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhhcCH
Confidence 45889999999999999999999999999999999999999999999999999987778889999999888776666677
Q ss_pred hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHHH
Q psy3092 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH---SEEPGRFAKLL 336 (347)
Q Consensus 260 ~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~---~~~~~Rf~~LL 336 (347)
.++++.+ .+++.+|++|++|++||+||+||+||| |++|+++...|+++|+++..+|++|+..++ ++++.||++||
T Consensus 148 ~~~~~~l-~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL 225 (266)
T 2r40_D 148 AYVIEDL-LHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKIL 225 (266)
T ss_dssp HHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhcccCCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHH
Confidence 7777665 489999999999999999999999999 999999999999999999999999999888 78899999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 226 ~~L~~Lr~l~ 235 (266)
T 2r40_D 226 GILTEIRTLG 235 (266)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 42
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.97 E-value=9.7e-31 Score=231.90 Aligned_cols=169 Identities=24% Similarity=0.410 Sum_probs=148.2
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCC--CceEecCCccccccch
Q psy3092 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK--DGILLAPGVTVYRSSA 254 (347)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~--~~~~~~~g~~i~~~~~ 254 (347)
.....+..++++....++.+++|||++|+|.+|+.+||+.|||++|.+++++..+|+++..+ +.+++++|..+.++..
T Consensus 37 ~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 116 (260)
T 3vhv_A 37 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM 116 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHh
Confidence 44567889999999999999999999999999999999999999999999999999987654 4678899988877666
Q ss_pred hhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC---ch
Q psy3092 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE---PG 330 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p-~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~---~~ 330 (347)
...++.++.+. +.+++.+|++|++|++||++|+||+|||| |++||++...|+++|+++..+|.+|+..++++. +.
T Consensus 117 ~~~~~~~~~~~-l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~ 195 (260)
T 3vhv_A 117 HQSAMYELCQG-MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQ 195 (260)
T ss_dssp HHTTCHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_pred hcccHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhh
Confidence 65666665554 46899999999999999999999999999 999999999999999999999999999888754 79
Q ss_pred HHHHHHhhhhhhhccC
Q psy3092 331 RFAKLLLRLPSLRSIE 346 (347)
Q Consensus 331 Rf~~LL~ll~~lr~i~ 346 (347)
||++||++||+||+|+
T Consensus 196 RF~~LL~~Lp~Lr~l~ 211 (260)
T 3vhv_A 196 RFYQLTKLLDSMHDLV 211 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 43
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.97 E-value=9.8e-31 Score=231.49 Aligned_cols=166 Identities=36% Similarity=0.634 Sum_probs=148.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccC--CCceEecCCccccccchh-h
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV--KDGILLAPGVTVYRSSAH-E 256 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~--~~~~~~~~g~~i~~~~~~-~ 256 (347)
..+..++++..+.++.+++|||++|+|..|+.+||+.|||++|.+++++..+|+++.. .+.+++++|..+..+... .
T Consensus 56 ~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~ 135 (257)
T 3plz_A 56 STFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQ 135 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhh
Confidence 4578899999999999999999999999999999999999999999999999998754 477888999888766543 2
Q ss_pred cCc--hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q psy3092 257 AGV--GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334 (347)
Q Consensus 257 ~~~--~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~ 334 (347)
.+. .++.+. +.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++
T Consensus 136 ~g~~~~~~~~~-l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~ 214 (257)
T 3plz_A 136 AGATLNNLMSH-AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ 214 (257)
T ss_dssp SCHHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred cCCcHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 232 344444 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccC
Q psy3092 335 LLLRLPSLRSIE 346 (347)
Q Consensus 335 LL~ll~~lr~i~ 346 (347)
||++||+||+++
T Consensus 215 LL~~Lp~Lr~l~ 226 (257)
T 3plz_A 215 LLLRLPEIRAIS 226 (257)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 999999999875
No 44
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.97 E-value=1.2e-30 Score=229.91 Aligned_cols=166 Identities=31% Similarity=0.557 Sum_probs=148.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccC--CCceEecCCccccccchh-h
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV--KDGILLAPGVTVYRSSAH-E 256 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~--~~~~~~~~g~~i~~~~~~-~ 256 (347)
..+..++++....++.+++|||++|+|.+|+.+||+.|||++|.+++++..+++++.. .+.+++++|..+..+... .
T Consensus 45 ~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (246)
T 1ymt_A 45 APFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQ 124 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhh
Confidence 4578899999999999999999999999999999999999999999999999998865 577888999888765443 2
Q ss_pred cCc--hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q psy3092 257 AGV--GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334 (347)
Q Consensus 257 ~~~--~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~ 334 (347)
.+. .++++. +.+++.+|++|++|++||++|+||+|||||++|+++...++++|+++..+|.+|+..++++++.||++
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 203 (246)
T 1ymt_A 125 AGSLLHSLVLR-AQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQ 203 (246)
T ss_dssp CCHHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred cchhHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 222 234444 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccC
Q psy3092 335 LLLRLPSLRSIE 346 (347)
Q Consensus 335 LL~ll~~lr~i~ 346 (347)
||++||.||+++
T Consensus 204 LL~~L~~Lr~~~ 215 (246)
T 1ymt_A 204 LLLSLVEVRALS 215 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 999999999875
No 45
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.97 E-value=1.7e-30 Score=231.29 Aligned_cols=166 Identities=30% Similarity=0.499 Sum_probs=144.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchh-hcC
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EAG 258 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~-~~~ 258 (347)
..+..++++....++.+|+|||++|+|..|+.+||+.|||++|.+++++..+++++...+.+++++|..++++... ..+
T Consensus 31 ~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~~ 110 (268)
T 1yye_A 31 SMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEG 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEGGGGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEecCCcccChhhHhhhcc
Confidence 4478899999999999999999999999999999999999999999999999999988888899999887765433 245
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHhcC---CCC
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS-------QQVVEMLREKVYTSLEEYTRVNH---SEE 328 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~-------~~~i~~~r~~~~~~L~~y~~~~~---~~~ 328 (347)
+.++++.+. +++.+|++|++|++||+||+||+|||||++|+++ ++.++++|+++..+|.+|+..++ +++
T Consensus 111 ~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~ 189 (268)
T 1yye_A 111 ILEIFDMLL-ATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQ 189 (268)
T ss_dssp HHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 556666654 8999999999999999999999999999999864 67899999999999999998764 468
Q ss_pred chHHHHHHhhhhhhhccC
Q psy3092 329 PGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 329 ~~Rf~~LL~ll~~lr~i~ 346 (347)
+.||++||++||.||+|+
T Consensus 190 ~~Rf~~LLl~Lp~Lr~i~ 207 (268)
T 1yye_A 190 SMRLANLLMLLSHVRHAS 207 (268)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 899999999999999875
No 46
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.97 E-value=2.6e-30 Score=227.04 Aligned_cols=168 Identities=30% Similarity=0.495 Sum_probs=148.7
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchh-h
Q psy3092 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-E 256 (347)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~-~ 256 (347)
....+..++++..+.++.+++|||++|+|..|+.+||+.|+|++|.+++++..+++++..++.+++++|..+.++... .
T Consensus 31 ~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~ 110 (240)
T 3oll_A 31 EASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCV 110 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETBEEEEGGGGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeeEecCCcccchhhHHHH
Confidence 345678999999999999999999999999999999999999999999999999999988888999999888776543 2
Q ss_pred cCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHhcC---C
Q psy3092 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS-------QQVVEMLREKVYTSLEEYTRVNH---S 326 (347)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~-------~~~i~~~r~~~~~~L~~y~~~~~---~ 326 (347)
.++.++++.+. +++.+|++|++|++||++|+||+|||||++|+++ ++.++++|+++..+|.+|+..++ +
T Consensus 111 ~~~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~ 189 (240)
T 3oll_A 111 EGILEIFDMLL-ATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQ 189 (240)
T ss_dssp TTHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hhHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 45566666554 8999999999999999999999999999999864 56788999999999999998763 4
Q ss_pred CCchHHHHHHhhhhhhhccC
Q psy3092 327 EEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 327 ~~~~Rf~~LL~ll~~lr~i~ 346 (347)
+++.||++||++||+||+++
T Consensus 190 ~~~~Rf~~LL~~Lp~Lr~l~ 209 (240)
T 3oll_A 190 QQSMRLANLLMLLSHVRHAS 209 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhHHHHHHH
Confidence 67999999999999999875
No 47
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.97 E-value=1.6e-30 Score=231.96 Aligned_cols=167 Identities=30% Similarity=0.499 Sum_probs=143.7
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchh-hc
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAH-EA 257 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~-~~ 257 (347)
...+..++++....++.+|+|||++|+|.+|+.+||+.|||++|.+++++..+|+++...+.+++++|..+.++... ..
T Consensus 58 ~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~ 137 (271)
T 1l2j_A 58 ASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVE 137 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSSTTEECSSSSCCEETGGGGGST
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCeeeecCCccccchhhhhhc
Confidence 34578899999999999999999999999999999999999999999999999999988888889999877765433 24
Q ss_pred CchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHhc---CCC
Q psy3092 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS-------QQVVEMLREKVYTSLEEYTRVN---HSE 327 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~-------~~~i~~~r~~~~~~L~~y~~~~---~~~ 327 (347)
++.++++.+. +++.+|++|++|++||+||+||+|||||++|+++ ++.++++|++|..+|.+||..+ +++
T Consensus 138 g~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~ 216 (271)
T 1l2j_A 138 GILEIFDMLL-ATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQ 216 (271)
T ss_dssp THHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred cHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 5566676654 8999999999999999999999999999999876 3578899999999999999876 346
Q ss_pred CchHHHHHHhhhhhhhccC
Q psy3092 328 EPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 328 ~~~Rf~~LL~ll~~lr~i~ 346 (347)
++.||++||++||.||+++
T Consensus 217 ~~~Rf~~LLl~Lp~Lr~i~ 235 (271)
T 1l2j_A 217 QSMRLANLLMLLSHVRHAS 235 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999875
No 48
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=234.99 Aligned_cols=166 Identities=30% Similarity=0.540 Sum_probs=144.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccch-hhcC
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA-HEAG 258 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~-~~~~ 258 (347)
..+..++++..+.++.+|+|||++|+|.+|+.+||+.|||++|.+++++..+|+++...+.+++++|..++++.. ...+
T Consensus 44 ~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~~g 123 (298)
T 2ocf_A 44 SMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEG 123 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSTTEEEEETTEEEEHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccCCceeecCCceechhhhhhhhh
Confidence 457889999999999999999999999999999999999999999999999999998888899999988776543 2345
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHhcC---CC
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV--------RGLKSQQVVEMLREKVYTSLEEYTRVNH---SE 327 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~--------~~l~~~~~i~~~r~~~~~~L~~y~~~~~---~~ 327 (347)
+.++++.+. +++.+|++|++|++||+||+||+|||||+ +||++...|+++|+++..+|.+|+..++ ++
T Consensus 124 ~~~~~~~l~-~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~ 202 (298)
T 2ocf_A 124 MVEIFDMLL-ATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQ 202 (298)
T ss_dssp HHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHH-HHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 566676655 79999999999999999999999999999 6777788999999999999999998764 46
Q ss_pred CchHHHHHHhhhhhhhccC
Q psy3092 328 EPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 328 ~~~Rf~~LL~ll~~lr~i~ 346 (347)
++.||++||++||.||+|+
T Consensus 203 ~~~RF~~LLl~Lp~Lr~i~ 221 (298)
T 2ocf_A 203 QHQRLAQLLLILSHIRHMS 221 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999875
No 49
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=231.75 Aligned_cols=169 Identities=24% Similarity=0.410 Sum_probs=146.4
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCC--CceEecCCccccccch
Q psy3092 177 VNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK--DGILLAPGVTVYRSSA 254 (347)
Q Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~--~~~~~~~g~~i~~~~~ 254 (347)
.....+..++++....++.+++|||.+|+|.+|+.+||+.|||++|.+++++..+|+++..+ +.+++++|..+.++..
T Consensus 71 ~~~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~ 150 (294)
T 3vhu_A 71 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM 150 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHh
Confidence 34466889999999999999999999999999999999999999999999999999987654 4678899988877666
Q ss_pred hhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC---ch
Q psy3092 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE---PG 330 (347)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p-~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~---~~ 330 (347)
...++.++.+. +.+++.+|++|++|++||++|+||+|||| +++||++...|+++|+++..+|.+|+..++++. +.
T Consensus 151 ~~~~~~~~~~~-l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~ 229 (294)
T 3vhu_A 151 HQSAMYELCQG-MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQ 229 (294)
T ss_dssp HHTTCHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred hcccHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhH
Confidence 55566655544 56899999999999999999999999999 999999999999999999999999998877654 79
Q ss_pred HHHHHHhhhhhhhccC
Q psy3092 331 RFAKLLLRLPSLRSIE 346 (347)
Q Consensus 331 Rf~~LL~ll~~lr~i~ 346 (347)
||++||++||+||+|+
T Consensus 230 RF~~LL~lLp~Lr~l~ 245 (294)
T 3vhu_A 230 RFYQLTKLLDSMHDLV 245 (294)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 50
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.97 E-value=4.3e-30 Score=231.41 Aligned_cols=166 Identities=19% Similarity=0.353 Sum_probs=147.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecC-CccccccchhhcC
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAP-GVTVYRSSAHEAG 258 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~-g~~i~~~~~~~~~ 258 (347)
..+..+++.....++.+|+|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+.+++ |..+.++.....+
T Consensus 59 ~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~g 138 (292)
T 2o4j_A 59 SMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAG 138 (292)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHHHhcC
Confidence 347888999999999999999999999999999999999999999999999998766566667773 7666666655556
Q ss_pred ch-hhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHH
Q psy3092 259 VG-GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKL 335 (347)
Q Consensus 259 ~~-~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~--~~~~Rf~~L 335 (347)
+. .+++. +.+++.+|++|++|++||+||+||+|||||++||++...|+++|+++..+|.+|+..+++ +++.||++|
T Consensus 139 ~~~~~~~~-l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~L 217 (292)
T 2o4j_A 139 HTLELIEP-LIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKM 217 (292)
T ss_dssp CCHHHHHH-HHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHHH
T ss_pred CcHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHH
Confidence 66 55555 458999999999999999999999999999999999999999999999999999999988 889999999
Q ss_pred HhhhhhhhccC
Q psy3092 336 LLRLPSLRSIE 346 (347)
Q Consensus 336 L~ll~~lr~i~ 346 (347)
|++||.||+|+
T Consensus 218 L~~L~~Lr~l~ 228 (292)
T 2o4j_A 218 IQKLADLRSLN 228 (292)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 51
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.97 E-value=5.4e-30 Score=225.84 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=151.1
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..++++....+..+++|||++|+|..|+.+||+.|||++|.+++++..++++....+.+++++|..+.++.....+
T Consensus 51 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (248)
T 2nxx_E 51 DVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAG 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHhcc
Confidence 34578888999999999999999999999999999999999999999999999998877788899999888776666666
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS-EEPGRFAKLLL 337 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~-~~~~Rf~~LL~ 337 (347)
+.++++.+. +++.+|++|++|++||++|+||+||+ +++|+++...|+++|+++..+|++|+..+++ +++.||++||+
T Consensus 131 ~~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~ 208 (248)
T 2nxx_E 131 MGETIEDLL-HFCRTMYSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLS 208 (248)
T ss_dssp CHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 767776655 89999999999999999999999997 8999999999999999999999999998884 68999999999
Q ss_pred hhhhhhccC
Q psy3092 338 RLPSLRSIE 346 (347)
Q Consensus 338 ll~~lr~i~ 346 (347)
+||.||+|+
T Consensus 209 ~L~~Lr~l~ 217 (248)
T 2nxx_E 209 VLTELRTLG 217 (248)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 52
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.97 E-value=2.7e-30 Score=226.81 Aligned_cols=166 Identities=22% Similarity=0.404 Sum_probs=150.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhc
Q psy3092 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257 (347)
Q Consensus 178 ~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~ 257 (347)
....+..++++....+..+++|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+++++|..+.++....
T Consensus 45 ~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~- 123 (244)
T 1pdu_A 45 EADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLR- 123 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHHHh-
Confidence 4466888999999999999999999999999999999999999999999999999998777888999998887765432
Q ss_pred CchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHH
Q psy3092 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKL 335 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~--~~~~Rf~~L 335 (347)
++.++++.+ .+++.+|++|++|++||+||+||+||| +++||++...|+++|+++..+|.+|+..+++ +++.||++|
T Consensus 124 ~~~~~~~~l-~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~L 201 (244)
T 1pdu_A 124 SFGEWLNDI-MEFSRSLHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRL 201 (244)
T ss_dssp HHTTHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 455666665 489999999999999999999999998 8999999999999999999999999988776 689999999
Q ss_pred HhhhhhhhccC
Q psy3092 336 LLRLPSLRSIE 346 (347)
Q Consensus 336 L~ll~~lr~i~ 346 (347)
|++||+||+|+
T Consensus 202 L~~L~~Lr~l~ 212 (244)
T 1pdu_A 202 LGKLPELRSLS 212 (244)
T ss_dssp HTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999886
No 53
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.97 E-value=1.2e-29 Score=226.00 Aligned_cols=164 Identities=21% Similarity=0.313 Sum_probs=144.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..+++.....++.+|+|||++|+|..|+.+||+.|||++|.+++++..|+++....+.+.+ +|..+..+.....++
T Consensus 65 ~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~-~g~~~~~~~~~~~~~ 143 (270)
T 1n83_A 65 VMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDVFKSLGC 143 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEe-CCccccHHHHHhcCH
Confidence 4577788889999999999999999999999999999999999999999999997665565555 676655554444566
Q ss_pred hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhhh
Q psy3092 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRL 339 (347)
Q Consensus 260 ~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll 339 (347)
..+.+.+. +++.+|++|++|++||+||+||+|||||++|+++...|+++|+++..+|.+|+..+++ ++.||++||++|
T Consensus 144 ~~~~~~i~-~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L 221 (270)
T 1n83_A 144 EDFISFVF-EFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKV 221 (270)
T ss_dssp HHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHH
Confidence 66666655 8999999999999999999999999999999999999999999999999999998887 579999999999
Q ss_pred hhhhccC
Q psy3092 340 PSLRSIE 346 (347)
Q Consensus 340 ~~lr~i~ 346 (347)
|.||+|+
T Consensus 222 ~~Lr~l~ 228 (270)
T 1n83_A 222 STLRALC 228 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 54
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.97 E-value=9.5e-31 Score=230.84 Aligned_cols=166 Identities=29% Similarity=0.517 Sum_probs=146.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccch-hhcC
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSA-HEAG 258 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~-~~~~ 258 (347)
..+..+++...+.++.+++|||++|+|.+|+.+||+.|||++|.+++++..+++++..++.+++++|..++++.. ...+
T Consensus 35 ~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~~~ 114 (248)
T 1xpc_A 35 SMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEG 114 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhccccCceeecCCceeCccchhhhcc
Confidence 457889999999999999999999999999999999999999999999999999998888899999987766543 2245
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhcC---CC
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK--------SQQVVEMLREKVYTSLEEYTRVNH---SE 327 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~--------~~~~i~~~r~~~~~~L~~y~~~~~---~~ 327 (347)
+.++++.+. +++.+|++|++|++||++|+||+|||||+.+++ +...|+++|+++..+|.+|+..++ ++
T Consensus 115 ~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~ 193 (248)
T 1xpc_A 115 MVEIFDMLL-ATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQ 193 (248)
T ss_dssp HHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 556666655 699999999999999999999999999996553 467899999999999999998764 36
Q ss_pred CchHHHHHHhhhhhhhccC
Q psy3092 328 EPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 328 ~~~Rf~~LL~ll~~lr~i~ 346 (347)
++.||++||++||.||+++
T Consensus 194 ~~~Rf~~LL~~L~~Lr~~~ 212 (248)
T 1xpc_A 194 QHQRLAQLLLILSHIRHMS 212 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 8899999999999999875
No 55
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.97 E-value=4.7e-30 Score=226.16 Aligned_cols=167 Identities=23% Similarity=0.360 Sum_probs=144.8
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..++++....++.+|+|||++|+|..|+.+||+.|||++|.+++++..++++....+. ++.++..+..+.....+
T Consensus 53 ~~~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 131 (246)
T 1xvp_B 53 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQN-FLCGPLRYTIEDGARVG 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTE-EECSSCEECHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccCe-EeeCCeeecHHHHHHcc
Confidence 34688999999999999999999999999999999999999999999999999988766554 45555555554444456
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhc--CCCCchHHHHHH
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN--HSEEPGRFAKLL 336 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~--~~~~~~Rf~~LL 336 (347)
+...+.+.+.+++.+|++|++|++||+||+||+|||||++|+++...|+++|+++..+|.+|+..+ +++++.||++||
T Consensus 132 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL 211 (246)
T 1xvp_B 132 FQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLL 211 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Confidence 663333445689999999999999999999999999999999999999999999999999999854 568899999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 212 ~~L~~Lr~i~ 221 (246)
T 1xvp_B 212 GLLAELRSIN 221 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 56
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.97 E-value=1.5e-29 Score=228.74 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=141.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCce-EecC-Cccccccchhhc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI-LLAP-GVTVYRSSAHEA 257 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~-~~~~-g~~i~~~~~~~~ 257 (347)
..+..++++....++.+|+|||++|+|..|+.+||+.|||++|.+++++..++++ ...+.. .+++ +..+.++.....
T Consensus 102 ~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 180 (302)
T 2hc4_A 102 SMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSF-SLEDMSWSCGGPDFKYCINDVTKA 180 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTE-ETTTTEEECSSSTTEECHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCeEEecCCCeeecHHHHHHc
Confidence 3468899999999999999999999999999999999999999999999999654 444444 4443 344444444444
Q ss_pred Cc-hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q psy3092 258 GV-GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLL 336 (347)
Q Consensus 258 ~~-~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL 336 (347)
++ ..+++ .+.+++.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|++|+..++++++.||++||
T Consensus 181 g~~~~~~~-~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~LL 259 (302)
T 2hc4_A 181 GHTLELLE-PLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMI 259 (302)
T ss_dssp TCCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred cCcHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 55 34444 45589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 260 l~L~~Lr~l~ 269 (302)
T 2hc4_A 260 QKLADLRSLN 269 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 57
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=225.86 Aligned_cols=167 Identities=28% Similarity=0.512 Sum_probs=139.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCce-EecCCcccc----ccch
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI-LLAPGVTVY----RSSA 254 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~-~~~~g~~i~----~~~~ 254 (347)
.+++.++++..+.++.+|+|||++|+|.+|+.+||+.|||++|.+++++..|+++...+... ..++|.... .+..
T Consensus 34 ~~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~ 113 (249)
T 3p0u_A 34 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKL 113 (249)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccc
Confidence 35788999999999999999999999999999999999999999999999999987765443 334443321 1222
Q ss_pred hhcCchhhHHhh--HHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q psy3092 255 HEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332 (347)
Q Consensus 255 ~~~~~~~~~~~~--~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf 332 (347)
.......+.+.+ +.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||
T Consensus 114 ~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf 193 (249)
T 3p0u_A 114 SGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRL 193 (249)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 222333344433 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhccC
Q psy3092 333 AKLLLRLPSLRSIE 346 (347)
Q Consensus 333 ~~LL~ll~~lr~i~ 346 (347)
++||++||.||+|+
T Consensus 194 ~~LL~~L~~Lr~i~ 207 (249)
T 3p0u_A 194 ARILVRLPALRLMS 207 (249)
T ss_dssp HHHHTTHHHHHTSC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999986
No 58
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.97 E-value=2.9e-30 Score=229.05 Aligned_cols=167 Identities=21% Similarity=0.413 Sum_probs=145.9
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCC--ceEecCCccccccchhh
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD--GILLAPGVTVYRSSAHE 256 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~--~~~~~~g~~i~~~~~~~ 256 (347)
...+..++++....++.+++|||++|+|.+|+.+||+.|||++|.+++++..+++++..++ .+++++|..++++....
T Consensus 40 ~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~ 119 (261)
T 1sqn_A 40 SSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 119 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhhhh
Confidence 3457889999999999999999999999999999999999999999999999999877654 36788888777655433
Q ss_pred cCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhc---CCCCchHH
Q psy3092 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLREKVYTSLEEYTRVN---HSEEPGRF 332 (347)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p-~~~~l~~~~~i~~~r~~~~~~L~~y~~~~---~~~~~~Rf 332 (347)
.++.++.+. +.+++.+|++|++|++||++|+||+|||| +++|+++...|+++|+++..+|.+|+..+ +++++.||
T Consensus 120 ~~~~~~~~~-i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf 198 (261)
T 1sqn_A 120 SSFYSLCLT-MWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRF 198 (261)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 334444443 55899999999999999999999999999 89999999999999999999999999864 34688999
Q ss_pred HHHHhhhhhhhccC
Q psy3092 333 AKLLLRLPSLRSIE 346 (347)
Q Consensus 333 ~~LL~ll~~lr~i~ 346 (347)
++||++||.||+++
T Consensus 199 ~~LL~~L~~Lr~~~ 212 (261)
T 1sqn_A 199 YQLTKLLDNLHDLV 212 (261)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 99999999999874
No 59
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.97 E-value=4.7e-30 Score=228.75 Aligned_cols=167 Identities=23% Similarity=0.430 Sum_probs=148.0
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCC--ceEecCCccccccchhh
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKD--GILLAPGVTVYRSSAHE 256 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~--~~~~~~g~~i~~~~~~~ 256 (347)
...+..+++..++.++.+++|||++|+|.+|+.+||+.|||++|.+++++..+|+++..++ .+++++|..++++....
T Consensus 48 ~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~ 127 (269)
T 1t7r_A 48 AALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHK 127 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhhh
Confidence 4567889999999999999999999999999999999999999999999999999887644 46778898887766555
Q ss_pred cCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC---CCCchHH
Q psy3092 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLREKVYTSLEEYTRVNH---SEEPGRF 332 (347)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p-~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~---~~~~~Rf 332 (347)
.++.++++. +.+++.+|++|++|++||+||+||+|||| +++||++...|+++|+++..+|.+|+..++ ++++.||
T Consensus 128 ~~~~~~~~~-i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~Rf 206 (269)
T 1t7r_A 128 SRMYSQCVR-MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRF 206 (269)
T ss_dssp TTCHHHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 555555544 56999999999999999999999999999 899999999999999999999999998765 3568999
Q ss_pred HHHHhhhhhhhccC
Q psy3092 333 AKLLLRLPSLRSIE 346 (347)
Q Consensus 333 ~~LL~ll~~lr~i~ 346 (347)
++||++||.||+++
T Consensus 207 ~~LL~~L~~Lr~l~ 220 (269)
T 1t7r_A 207 YQLTKLLDSVQPIA 220 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 60
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.97 E-value=1.3e-29 Score=225.75 Aligned_cols=189 Identities=23% Similarity=0.279 Sum_probs=146.7
Q ss_pred HHHHHHHHHhccCCCCCCcc--ccchhHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q psy3092 155 VERILEAEQRVDMKQEPADQ--DIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSH 232 (347)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~ 232 (347)
.+.+..++..+.....+... ......-+..+....+..+..+|+|||++|+|.+|+.+||+.|||++|.+++++.+++
T Consensus 49 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~ 128 (273)
T 3vi8_A 49 METLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSS 128 (273)
T ss_dssp HHHHHHHHHHHSGGGGSCC--CCCHHHHHHHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGG
T ss_pred hHHHHhhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666554432222111 1111234667777888899999999999999999999999999999999999999998
Q ss_pred ccccCCCceEecCCccccccchh---hcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q psy3092 233 RSISVKDGILLAPGVTVYRSSAH---EAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309 (347)
Q Consensus 233 ~s~~~~~~~~~~~g~~i~~~~~~---~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~ 309 (347)
++... +..+..|......... ..++..+++. +.+++.+|++|++|++||+||+||+||+||++||++...|+++
T Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~l 205 (273)
T 3vi8_A 129 VMNKD--GMLVAYGNGFITREFLKSLRKPFCDIMEP-KFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKM 205 (273)
T ss_dssp GEETT--EEEETTTTEEEEHHHHHHSCTTTHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHH
T ss_pred HhcCC--CCeeeeCCCccchHHHHHhhhhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 76443 3333333322222211 1233344444 5589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHhhhhhhhccC
Q psy3092 310 REKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIE 346 (347)
Q Consensus 310 r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~ 346 (347)
|+++..+|.+|+..++++.+.||++||++||.||+|+
T Consensus 206 qe~~~~aL~~yi~~~~p~~~~rF~kLL~~Lp~LR~l~ 242 (273)
T 3vi8_A 206 QEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLV 242 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 61
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.97 E-value=1.2e-29 Score=229.75 Aligned_cols=166 Identities=29% Similarity=0.409 Sum_probs=151.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..++++....++.+|+|||.+|+|..|+.+||+.|||++|.+++++..|+++....+.+++++|..+.++.....+
T Consensus 115 ~~~~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~~g 194 (310)
T 1z5x_E 115 EERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAG 194 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHhcc
Confidence 35578889999999999999999999999999999999999999999999999999887888999999888776655566
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH-SEEPGRFAKLLL 337 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~-~~~~~Rf~~LL~ 337 (347)
+..+++.+. +++.+|++|++|++||+||+||+||+ |++||++...|+++|++|..+|.+|+..++ ++++.||++||+
T Consensus 195 ~~~~~~~i~-~~~~~l~~L~ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl 272 (310)
T 1z5x_E 195 MGDTVEDLL-RFCRHMCAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLS 272 (310)
T ss_dssp THHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred hhHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 777776655 79999999999999999999999997 999999999999999999999999999887 578999999999
Q ss_pred hhhhhhccC
Q psy3092 338 RLPSLRSIE 346 (347)
Q Consensus 338 ll~~lr~i~ 346 (347)
+||+||+|+
T Consensus 273 ~Lp~LR~l~ 281 (310)
T 1z5x_E 273 VLTELRTLG 281 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 62
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.97 E-value=5.2e-30 Score=224.00 Aligned_cols=164 Identities=24% Similarity=0.379 Sum_probs=139.2
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..++++....++.+++|||++|+|..|+.+||+.|||++|.+++++..|+++.... ..+|..+.++.....+
T Consensus 41 ~~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~ 116 (232)
T 1osh_A 41 EENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKL----PSGHSDLLEERIRNSG 116 (232)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCcc----CCCCceecHHHHHHcC
Confidence 345788999999999999999999999999999999999999999999999998753321 1233444444333344
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
+...+.+.+.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|++|+..++++++.||++||++
T Consensus 117 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~ 196 (232)
T 1osh_A 117 ISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGR 196 (232)
T ss_dssp CCTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 44323334557999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
||+||+|+
T Consensus 197 L~~Lr~l~ 204 (232)
T 1osh_A 197 LTELRTFN 204 (232)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99999875
No 63
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.97 E-value=8.8e-30 Score=224.97 Aligned_cols=165 Identities=25% Similarity=0.457 Sum_probs=148.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..+++.....+..+|+|||++|+|.+|+.+||+.|||++|.+++++++++++....+.+++.+|..+.+.... .+
T Consensus 51 ~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~-~~ 129 (257)
T 3v3e_B 51 AGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA-RG 129 (257)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHH-hh
Confidence 34577888999999999999999999999999999999999999999999999999888899999999888776553 35
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHH
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV--NHSEEPGRFAKLL 336 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~--~~~~~~~Rf~~LL 336 (347)
++++++.+. +++.+|++|++|++||+||+||+||+ |++||++...|+++|+++..+|.+|+.. ++++.+.||++||
T Consensus 130 ~~~~~~~l~-~~~~~l~~L~ld~~E~a~LkAivLfs-d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL 207 (257)
T 3v3e_B 130 FGDWIDSIL-AFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLL 207 (257)
T ss_dssp HTTHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHSS-CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHH
Confidence 566666655 89999999999999999999999998 8999999999999999999999999964 4678899999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 208 ~~Lp~LR~l~ 217 (257)
T 3v3e_B 208 GKLPELRTLC 217 (257)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 64
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=222.37 Aligned_cols=165 Identities=39% Similarity=0.667 Sum_probs=135.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCce-EecCCccccccch-hhcC
Q psy3092 181 QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGI-LLAPGVTVYRSSA-HEAG 258 (347)
Q Consensus 181 ~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~-~~~~g~~i~~~~~-~~~~ 258 (347)
.++.++++....++.+++|||++|+|.+|+.+||+.|||++|.+++++..+++++..+... .+++|........ ....
T Consensus 38 ~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~ 117 (244)
T 3cjw_A 38 GIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVA 117 (244)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CC
T ss_pred cHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHH
Confidence 4678899999999999999999999999999999999999999999999999998766543 4445543221110 0111
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
+.+.. +.+.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++..+|.+|+..++++++.||++||++
T Consensus 118 ~~~~~-~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~ 196 (244)
T 3cjw_A 118 FMDHI-RIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLR 196 (244)
T ss_dssp CSHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTT
T ss_pred HHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 22222 34568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
||+||+++
T Consensus 197 L~~Lr~l~ 204 (244)
T 3cjw_A 197 LPSLRTVS 204 (244)
T ss_dssp HHHHHHSC
T ss_pred hHHHHhhh
Confidence 99999986
No 65
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.96 E-value=4.3e-30 Score=235.82 Aligned_cols=166 Identities=36% Similarity=0.634 Sum_probs=132.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccC--CCceEecCCccccccchh-h
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV--KDGILLAPGVTVYRSSAH-E 256 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~--~~~~~~~~g~~i~~~~~~-~ 256 (347)
..+..++++..+.++.+|+|||+||+|.+|+.+||+.|||++|.+++++..+|+++.. .+.+++++|..+..+... .
T Consensus 151 ~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~ 230 (352)
T 3tx7_B 151 STFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQ 230 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999998765 367888999888776543 2
Q ss_pred cCc--hhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q psy3092 257 AGV--GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334 (347)
Q Consensus 257 ~~~--~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~ 334 (347)
.+. .++++. +.+++.+|++|++|++||+||+||+|||||++||++...|+++|+++..+|.+|+..++++++.||++
T Consensus 231 ~g~~~~~l~~~-l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~k 309 (352)
T 3tx7_B 231 AGATLNNLMSH-AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ 309 (352)
T ss_dssp SCHHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred ccccHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 232 344444 56899999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHhhhhhhhccC
Q psy3092 335 LLLRLPSLRSIE 346 (347)
Q Consensus 335 LL~ll~~lr~i~ 346 (347)
||++|+.||+|+
T Consensus 310 LLllLp~LR~ls 321 (352)
T 3tx7_B 310 LLLRLPEIRAIS 321 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 66
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.96 E-value=9e-30 Score=230.73 Aligned_cols=164 Identities=22% Similarity=0.339 Sum_probs=144.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcCc
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~~ 259 (347)
..+..+++.....++.+|+|||.+|+|..|+.+||+.|||++|.+++++..++++....+.+++. |..+.++.. ..++
T Consensus 120 ~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~-~~~~~~~~~-~~g~ 197 (316)
T 1nrl_A 120 SLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECG-RLSYCLEDT-AGGF 197 (316)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEET-TEEEEECCC-SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEC-CEeecHHHH-hccc
Confidence 35788999999999999999999999999999999999999999999999999887666666654 455555554 4455
Q ss_pred h-hhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHHH
Q psy3092 260 G-GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKLL 336 (347)
Q Consensus 260 ~-~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~--~~~~Rf~~LL 336 (347)
. .+++. +.+++.+|++|++|++||+||+||+|||||++||++...|+++|++|..+|.+|+..+++ +++.||++||
T Consensus 198 ~~~~~~~-i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kLL 276 (316)
T 1nrl_A 198 QQLLLEP-MLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIM 276 (316)
T ss_dssp HHHTTSH-HHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHH
Confidence 4 34444 448999999999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred hhhhhhhccC
Q psy3092 337 LRLPSLRSIE 346 (347)
Q Consensus 337 ~ll~~lr~i~ 346 (347)
++||.||+|+
T Consensus 277 l~Lp~LR~l~ 286 (316)
T 1nrl_A 277 AMLTELRSIN 286 (316)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 67
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.96 E-value=2.1e-29 Score=223.82 Aligned_cols=168 Identities=24% Similarity=0.362 Sum_probs=137.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEe----cCCccccccc--
Q psy3092 180 QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL----APGVTVYRSS-- 253 (347)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~----~~g~~i~~~~-- 253 (347)
...+.+++++...++.+|+|||++|+|..|+.+||+.|||++|.+++++..|++++..++.... .++.......
T Consensus 47 ~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~ 126 (268)
T 3f5c_B 47 KDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQET 126 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhccccccc
Confidence 3567899999999999999999999999999999999999999999999999999876544321 1111111111
Q ss_pred -------------------hhhcCchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH
Q psy3092 254 -------------------AHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVY 314 (347)
Q Consensus 254 -------------------~~~~~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~ 314 (347)
....+....+.+.+.+++.+|++|++|++||++|+||+|||||++|+++...|+++|+++.
T Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~ 206 (268)
T 3f5c_B 127 EGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQ 206 (268)
T ss_dssp ----------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Confidence 0111111122345668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHhhhhhhhccCC
Q psy3092 315 TSLEEYTRVNHSEEPGRFAKLLLRLPSLRSIEV 347 (347)
Q Consensus 315 ~~L~~y~~~~~~~~~~Rf~~LL~ll~~lr~i~~ 347 (347)
.+|.+|+..++++.+.||++||++||.||+|+.
T Consensus 207 ~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~ 239 (268)
T 3f5c_B 207 QILTEHIRMMQREYQIRSAELNSALFLLRFINS 239 (268)
T ss_dssp HHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 68
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.96 E-value=6.4e-29 Score=218.80 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=144.1
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccccchhhcC
Q psy3092 179 EQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258 (347)
Q Consensus 179 ~~~~~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~~~~~~~~ 258 (347)
...+..+++..+..+..+|+|||++|+|.+|+.+||+.|||++|.+++++..++++....+.+.+ +|..+..+.....+
T Consensus 55 ~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~ 133 (248)
T 3l0l_A 55 WEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELFRALG 133 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEe-CCCcccHHHHhhcc
Confidence 34578888999999999999999999999999999999999999999999999887665565555 67666555444456
Q ss_pred chhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHhh
Q psy3092 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338 (347)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~l 338 (347)
..++++.+. +++.+|++|++|++||+||+||+|||||++||++...|+++|+++..+|.+|+..+++ +.||++||++
T Consensus 134 ~~~~~~~l~-~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~ 210 (248)
T 3l0l_A 134 CSELISSIF-DFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK 210 (248)
T ss_dssp CHHHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT
T ss_pred HHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc
Confidence 677777766 8999999999999999999999999999999999999999999999999999998874 6799999999
Q ss_pred hhhhhccC
Q psy3092 339 LPSLRSIE 346 (347)
Q Consensus 339 l~~lr~i~ 346 (347)
|+||+|+
T Consensus 211 -p~LR~i~ 217 (248)
T 3l0l_A 211 -GKLRSLC 217 (248)
T ss_dssp -THHHHHH
T ss_pred -HHHHHHH
Confidence 9999986
No 69
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.96 E-value=2e-28 Score=217.74 Aligned_cols=162 Identities=27% Similarity=0.470 Sum_probs=138.7
Q ss_pred HhhhhHHHHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCcc-ccccchhh--c
Q psy3092 182 ATNICKATDKQ-LFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT-VYRSSAHE--A 257 (347)
Q Consensus 182 ~~~~~~~~~~~-l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~-i~~~~~~~--~ 257 (347)
....|...... +..+|+|||++|+|.+|+.+||+.|||++|.+++++..+++. ..++.++++|.. +.++.... .
T Consensus 74 ~~~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~--~~~~~~~~~g~~~~~~~~~~~~~~ 151 (269)
T 3u9q_A 74 IFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLM--NKDGVLISEGQGFMTREFLKSLRK 151 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTE--ETTEEEETTTTEEEEHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhc--CCCCeEEeCCCccccHHHHHHhhh
Confidence 34556555555 668999999999999999999999999999999999999664 346788888765 34433322 3
Q ss_pred CchhhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q psy3092 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLL 337 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~~~~~i~~~r~~~~~~L~~y~~~~~~~~~~Rf~~LL~ 337 (347)
++.++.+.+ .+++.+|++|++|++||+||+||+|||||++|+++...|+++|+++..+|++|+..++++++.||++||+
T Consensus 152 ~~~~~~~~l-~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~ 230 (269)
T 3u9q_A 152 PFGDFMEPK-FEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQ 230 (269)
T ss_dssp TGGGSSHHH-HHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHH
Confidence 455556554 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccC
Q psy3092 338 RLPSLRSIE 346 (347)
Q Consensus 338 ll~~lr~i~ 346 (347)
+||+||+|+
T Consensus 231 ~Lp~LR~i~ 239 (269)
T 3u9q_A 231 KMTDLRQIV 239 (269)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 999999985
No 70
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.96 E-value=4.8e-29 Score=218.43 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=138.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceE---ecCCccccccchhh--c
Q psy3092 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL---LAPGVTVYRSSAHE--A 257 (347)
Q Consensus 183 ~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~---~~~g~~i~~~~~~~--~ 257 (347)
..+++..+..++.+|+|||++|+|.+|+.+||+.|||++|.++++++.++++....+.+. +.+|..+.++.... .
T Consensus 44 ~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (243)
T 3up3_A 44 ADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNA 123 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhcc
Confidence 468899999999999999999999999999999999999999999999999877777653 34555554443322 3
Q ss_pred CchhhHHhhHHHHHHHHHh-cCCCHhHHHHHHHHHhhcCCCCCCCCH---HHHHHHHHHHHHHHHHHHHhcC-CCCchHH
Q psy3092 258 GVGGIFDRVLTELVSKMRE-MKMDKTELGCLRTIILFNPDVRGLKSQ---QVVEMLREKVYTSLEEYTRVNH-SEEPGRF 332 (347)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~-L~l~~~E~~lL~ai~l~~p~~~~l~~~---~~i~~~r~~~~~~L~~y~~~~~-~~~~~Rf 332 (347)
++.+...+.+.+++.+|++ |++|++||+||+||+||+|+ +|+++. ..|+++|+++..+|.+|+..++ ++++.||
T Consensus 124 g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf 202 (243)
T 3up3_A 124 DVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLN 202 (243)
T ss_dssp TTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 4444223445689999997 99999999999999999998 999865 7999999999999999998665 6889999
Q ss_pred HHHHhhhhhhhccC
Q psy3092 333 AKLLLRLPSLRSIE 346 (347)
Q Consensus 333 ~~LL~ll~~lr~i~ 346 (347)
++||++||+||+|+
T Consensus 203 ~kLL~~Lp~LR~i~ 216 (243)
T 3up3_A 203 EQLPTALRMLREIS 216 (243)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999986
No 71
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.94 E-value=3.1e-26 Score=199.82 Aligned_cols=161 Identities=21% Similarity=0.234 Sum_probs=126.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCceEecCCccccc--cchhh--cC
Q psy3092 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR--SSAHE--AG 258 (347)
Q Consensus 183 ~~~~~~~~~~l~~~~~w~k~~p~F~~L~~~dq~~Llk~~~~~~~~l~~a~~s~~~~~~~~~~~g~~i~~--~~~~~--~~ 258 (347)
..+++..+..+..+|+|||++|+|.+|+.+||+.|||++|.++++++.++++....+.+.+++|..... ..... .+
T Consensus 44 ~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 123 (244)
T 3gyt_A 44 TDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPD 123 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCTTSTTCCEEGGGGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEeecCCcccchhHHHHHHhhhc
Confidence 467788889999999999999999999999999999999999999999998766666666665532111 10000 11
Q ss_pred ch----hhHHhhHHHHHHHHHhcCCCHhHHHHHHHHHhhcCCCCCCC---CHHHHHHHHHHHHHHHHHHHHhcC-CCCch
Q psy3092 259 VG----GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLK---SQQVVEMLREKVYTSLEEYTRVNH-SEEPG 330 (347)
Q Consensus 259 ~~----~~~~~~~~~l~~~l~~L~l~~~E~~lL~ai~l~~p~~~~l~---~~~~i~~~r~~~~~~L~~y~~~~~-~~~~~ 330 (347)
.. .-+.+.+.++... ++.++.||+||+||+||+||++|++ +...|+++|+++..+|++|+..++ ++.+.
T Consensus 124 ~~~~~~~~~~~~~~~f~~~---l~~~~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~ 200 (244)
T 3gyt_A 124 IKDTQKKGFLHFFNLLHSD---VRKNDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQ 200 (244)
T ss_dssp THHHHHHHHHHHHHHSCHH---HHTCHHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHH
T ss_pred chhhHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 11 0011122233333 4446779999999999999999999 688999999999999999998887 68899
Q ss_pred HHHHHHhhhhhhhccC
Q psy3092 331 RFAKLLLRLPSLRSIE 346 (347)
Q Consensus 331 Rf~~LL~ll~~lr~i~ 346 (347)
||++||++||+||+|+
T Consensus 201 rf~kLL~~Lp~LR~i~ 216 (244)
T 3gyt_A 201 RFASIPKALVALRKVA 216 (244)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 72
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.86 E-value=1.9e-23 Score=149.32 Aligned_cols=63 Identities=33% Similarity=0.590 Sum_probs=55.5
Q ss_pred CCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHHHhcCcchhH
Q psy3092 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREA 127 (347)
Q Consensus 63 ~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~~~~ 127 (347)
.++.|.||+++ |.+||+||||+ +++..|.|+.+++|.|++..|+.||+|||+|||+|||+...
T Consensus 12 ~p~~g~h~c~v-Cgd~asfFRRt-~~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~ 74 (87)
T 2lze_A 12 EPRGGKHICAI-CGNNAEDYKHT-DMDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHH 74 (87)
T ss_dssp CCSCCSSSCSS-SSSSSSSCTTT-TTSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCC
T ss_pred CCCCCCEEccC-CCCccceECcc-cCCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEecc
Confidence 35667788876 78899999998 56788999999999999999999999999999999998653
No 73
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=93.89 E-value=0.049 Score=38.51 Aligned_cols=18 Identities=44% Similarity=1.021 Sum_probs=15.1
Q ss_pred CCCCcCcccCCCCCCccc
Q psy3092 53 GSKHLCSICGDRASGKHY 70 (347)
Q Consensus 53 ~~~~~C~VCg~~a~g~Hy 70 (347)
...+.|.||||.|++|+-
T Consensus 15 ~g~h~c~vCgd~asfFRR 32 (87)
T 2lze_A 15 GGKHICAICGNNAEDYKH 32 (87)
T ss_dssp CCSSSCSSSSSSSSSCTT
T ss_pred CCCEEccCCCCccceECc
Confidence 456789999999999865
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=73.28 E-value=1.5 Score=29.50 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=32.9
Q ss_pred CCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
...|.||++..+..-=..+.|.+|..-|.-. |-.-.. + ..+.|.|..|+.++
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~--------Cl~~~~--v-P~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY--I-PEGQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHH--------HHTCSS--C-CSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccc--------cCCCCc--C-CCCCcCCccCcCcC
Confidence 3569999987644444678899996544433 322211 2 23578999998765
No 75
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=70.82 E-value=2.9 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=21.3
Q ss_pred CcCcccCCCCCC----cccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASG----KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g----~HyGv~sC~~Ck~FFRR~ 85 (347)
..|..|+-..+- --.|...|+||-.+||.-
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 348888865432 135788899999998754
No 76
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.38 E-value=5.5 Score=25.19 Aligned_cols=14 Identities=50% Similarity=1.611 Sum_probs=11.0
Q ss_pred cCcccCCCCCCcccccccch
Q psy3092 57 LCSICGDRASGKHYGVYSCE 76 (347)
Q Consensus 57 ~C~VCg~~a~g~HyGv~sC~ 76 (347)
.|.||| .||.+.|.
T Consensus 21 vCvvCG------ryGeYICd 34 (60)
T 2yqp_A 21 ICVVCG------RYGEYICD 34 (60)
T ss_dssp CCSSSS------SCCSEECS
T ss_pred eEEEec------Cccceeec
Confidence 499999 48887774
No 77
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=64.89 E-value=4 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.784 Sum_probs=15.2
Q ss_pred CcCcccCCCCCCcccccccchhhHHHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFF 82 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FF 82 (347)
..|..|+++.--. ...|+ |.++|
T Consensus 26 nRC~~CrKkvgL~---gf~Cr-Cg~~F 48 (74)
T 1wfl_A 26 NRCFMCRKKVGLT---GFDCR-CGNLF 48 (74)
T ss_dssp TBCSSSCCBCGGG---CEECT-TSCEE
T ss_pred CcChhhCCccccc---CeecC-CCCEe
Confidence 4699999874322 25788 87444
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.03 E-value=12 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.834 Sum_probs=16.2
Q ss_pred CCCcCcccCCCCCCcccccccchh--hH
Q psy3092 54 SKHLCSICGDRASGKHYGVYSCEG--CK 79 (347)
Q Consensus 54 ~~~~C~VCg~~a~g~HyGv~sC~~--Ck 79 (347)
....| ||+++..| -.+.|.. |.
T Consensus 35 e~~yC-iC~~~~~g---~MI~CD~~dC~ 58 (91)
T 1weu_A 35 EPTYC-LCHQVSYG---EMIGCDNPDCS 58 (91)
T ss_dssp CCBCS-TTCCBCCS---CCCCCSCSSCS
T ss_pred CCcEE-ECCCCCCC---CEeEecCCCCC
Confidence 44678 99998765 3678999 75
No 79
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=63.31 E-value=7.1 Score=23.70 Aligned_cols=30 Identities=30% Similarity=0.676 Sum_probs=21.0
Q ss_pred CcCcccCCCCCC----cccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASG----KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g----~HyGv~sC~~Ck~FFRR~ 85 (347)
..|..|+-..+- --.|...|+||-.+|+..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 458888865432 134678899999988763
No 80
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.12 E-value=3.2 Score=32.31 Aligned_cols=31 Identities=29% Similarity=0.791 Sum_probs=25.9
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|-.|.+.-|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 29 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 46799999754 34699999999999998875
No 81
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=62.28 E-value=2.5 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.713 Sum_probs=25.8
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||+..|-.|++.-|..
T Consensus 27 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 46799999765 34699999999999998874
No 82
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.09 E-value=3.2 Score=32.06 Aligned_cols=31 Identities=23% Similarity=0.685 Sum_probs=25.6
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|-.|++.-|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 46799999764 34699999999999998875
No 83
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=61.22 E-value=4.5 Score=31.34 Aligned_cols=31 Identities=26% Similarity=0.709 Sum_probs=25.9
Q ss_pred CCcCcccCCCCC---CcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRAS---GKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a~---g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+.- ...||++.|..|++.-|..
T Consensus 38 N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~L 71 (147)
T 3dwd_A 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 71 (147)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCccCCCCCCCCCeEEecccEeEhHhhChHHhcC
Confidence 467999997653 4699999999999998864
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.01 E-value=8.2 Score=27.04 Aligned_cols=51 Identities=24% Similarity=0.455 Sum_probs=32.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..|.||++..+.--=..+.|.+|-.-|.- .|-.-.. + ..+.|.|+.|+..+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~--------~Cl~p~~--v-P~g~W~C~~C~~~~ 76 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQ--------ECYGVPY--I-PEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCH--------HHHTCSS--C-CSSCCCCHHHHHHT
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhc--------ccCCCCc--c-CCCceECccccCcc
Confidence 46999998754333467889999644443 3433221 2 24678999998754
No 85
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=59.74 E-value=3 Score=32.16 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=25.4
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|-.|.+.-|..
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~L 58 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 58 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTS
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhccC
Confidence 46799999764 34699999999999998764
No 86
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.41 E-value=9 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=19.0
Q ss_pred CcCcccCCCC-CCcccccccchhh
Q psy3092 56 HLCSICGDRA-SGKHYGVYSCEGC 78 (347)
Q Consensus 56 ~~C~VCg~~a-~g~HyGv~sC~~C 78 (347)
..|.|||.+- .-..||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3j20_P 19 RRCIRCGQYGPIIRIQGLMLCRHC 42 (56)
T ss_dssp CCCSSSCCSSSCCCTTTCCCCHHH
T ss_pred eEeecCCCCcccccccCChHHHHH
Confidence 5699999874 3369999999988
No 87
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=58.76 E-value=3.4 Score=31.96 Aligned_cols=31 Identities=29% Similarity=0.790 Sum_probs=25.8
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|..|.+.-|..
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 46799999764 34699999999999998874
No 88
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=58.22 E-value=3.3 Score=31.83 Aligned_cols=31 Identities=19% Similarity=0.540 Sum_probs=25.6
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|-.|++.-|..
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 46799999764 34699999999999998874
No 89
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=57.10 E-value=5 Score=26.23 Aligned_cols=54 Identities=20% Similarity=0.523 Sum_probs=31.5
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcc--cccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI--IDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~--~~~~~r~~Cr~CR~~K 117 (347)
..|.||++..+..-=-.+.|.+|..-|.- .|-.-.-=. +...+.|.|+.|+.++
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~--------~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQ--------LCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEET--------TTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHh--------hhCCCcccccccCCCCCEECCCCcCcc
Confidence 56999998754333357789999644432 232221001 1234678999998653
No 90
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=56.69 E-value=8.5 Score=34.92 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=42.8
Q ss_pred CCcCcccCCCC-CCc--ccccccchhhHHHHHhhhcCC-----Ccc--cccCCCCcccccccccCchhhhhHHHHhcCcc
Q psy3092 55 KHLCSICGDRA-SGK--HYGVYSCEGCKGFFKRTVRKD-----LSY--ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124 (347)
Q Consensus 55 ~~~C~VCg~~a-~g~--HyGv~sC~~Ck~FFRR~v~~~-----~~~--~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~ 124 (347)
...|..||... .-. +|.|.-|..|+.||....-.. ..| -|..+++... -....|..|==++|+..-+-
T Consensus 50 e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~--Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 50 EDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLI--CGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp GGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEE--CCSTTCCCEECHHHHHHHTC
T ss_pred cceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEE--eCCCCCCcchHHHHHHHhcC
Confidence 45799999754 333 599999999999999985322 122 2434443211 01225553333788876554
Q ss_pred hhHHH
Q psy3092 125 REAVQ 129 (347)
Q Consensus 125 ~~~vq 129 (347)
+....
T Consensus 128 ~~~~~ 132 (386)
T 2pv0_B 128 PGTSG 132 (386)
T ss_dssp TTHHH
T ss_pred hhHHH
Confidence 44433
No 91
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=55.11 E-value=10 Score=24.66 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=22.4
Q ss_pred CcCcccCCCCCC----cccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASG----KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g----~HyGv~sC~~Ck~FFRR~ 85 (347)
..|..||-..+- --+|...|+||-.+|+.-
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 459999965432 246888999999999864
No 92
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=54.76 E-value=5.3 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=25.5
Q ss_pred CCcCcccCCCCC---CcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRAS---GKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a~---g~HyGv~sC~~Ck~FFRR~ 85 (347)
...|.-||.+.- ...||++.|..|++.-|-.
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~L 55 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSL 55 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHT
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcCC
Confidence 467999997653 4699999999999998863
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=51.76 E-value=6.8 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.544 Sum_probs=30.3
Q ss_pred CCcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
...|.||++.. ..+.|.+|...|.-. |-...-=.+ ..+.+.|..|+.+.
T Consensus 5 ~~~C~vC~~~g-----~ll~Cd~C~~~fH~~--------Cl~ppl~~~-p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKSG-----QLLMCDTCSRVYHLD--------CLDPPLKTI-PKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCCS-----SCEECSSSSCEECGG--------GSSSCCSSC-CCSCCCCHHHHHHH
T ss_pred CCCCcCCCCCC-----cEEEcCCCCcCEECC--------cCCCCcCCC-CCCceEChhccChh
Confidence 35699999852 578899997655543 332110011 23578999997654
No 94
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=50.07 E-value=12 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=20.2
Q ss_pred CcCcccCCCCCC------cccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASG------KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g------~HyGv~sC~~Ck~FFRR~ 85 (347)
..|..|+-..+- .--| ..|+||-.+||..
T Consensus 9 ~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 9 FQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp CCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 469999964431 1224 7899999999864
No 95
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.94 E-value=3.6 Score=25.63 Aligned_cols=21 Identities=33% Similarity=0.923 Sum_probs=17.7
Q ss_pred CCcCcccCCCCCCcccccccchhh
Q psy3092 55 KHLCSICGDRASGKHYGVYSCEGC 78 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyGv~sC~~C 78 (347)
.++|..||.. .+-|+..|+-|
T Consensus 14 k~iCpkC~a~---~~~gaw~CrKC 34 (51)
T 3j21_g 14 KYVCLRCGAT---NPWGAKKCRKC 34 (51)
T ss_dssp EEECTTTCCE---ECTTCSSCSSS
T ss_pred CccCCCCCCc---CCCCceecCCC
Confidence 4679999987 78899999877
No 96
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=49.22 E-value=7.4 Score=24.70 Aligned_cols=23 Identities=30% Similarity=1.032 Sum_probs=18.9
Q ss_pred CcCcccCCCC-CCcccccccchhh
Q psy3092 56 HLCSICGDRA-SGKHYGVYSCEGC 78 (347)
Q Consensus 56 ~~C~VCg~~a-~g~HyGv~sC~~C 78 (347)
..|.|||.+. .-.-||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 19 RVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred ceeecCCCCcccccccCCcHHHHH
Confidence 4699999874 3369999999888
No 97
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=48.39 E-value=16 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=21.8
Q ss_pred CcCcccCCCCCCc----ccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASGK----HYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g~----HyGv~sC~~Ck~FFRR~ 85 (347)
..|..||-..+-. --|...|+||-.+|+..
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~ 43 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 43 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHc
Confidence 5699999754432 24678899999988753
No 98
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.81 E-value=5.9 Score=25.73 Aligned_cols=53 Identities=17% Similarity=0.494 Sum_probs=30.4
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..|.+|+.+..... -.+.|..|...|.-. |..-..=.......+.|..|+-++
T Consensus 7 ~~C~~C~~~~~~~~-~mI~Cd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 7 GQCGACGESYAADE-FWICCDLCEMWFHGK--------CVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCSSSCCCCCSSS-CEEECSSSCCEEETT--------TTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCccCCCC-CEEEccCCCCCCCcc--------ccCcChhHhcCCCcEECCCCcCcC
Confidence 46999998753211 256799997666544 322111111123467899887654
No 99
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=47.64 E-value=6.4 Score=28.91 Aligned_cols=23 Identities=26% Similarity=0.918 Sum_probs=18.2
Q ss_pred cCcccCCC----CCCcccccccchhhH
Q psy3092 57 LCSICGDR----ASGKHYGVYSCEGCK 79 (347)
Q Consensus 57 ~C~VCg~~----a~g~HyGv~sC~~Ck 79 (347)
.|.-||.. ---.|||+..|++|+
T Consensus 7 ~C~eC~~~~~d~~l~~~F~~~VC~~Cr 33 (111)
T 1d4u_A 7 ICEECGKEFMDSYLMDHFDLPTCDDCR 33 (111)
T ss_dssp ECTTTCCEESCSSSTTTTSCCCCTTTC
T ss_pred ccccCCChhhHHHHHHhCCeeechhhc
Confidence 59999964 223599999999996
No 100
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=46.78 E-value=15 Score=29.71 Aligned_cols=47 Identities=17% Similarity=0.492 Sum_probs=29.1
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~ 116 (347)
..|.|||+.. ..+.|.+|-.-|... |-.-.-=.+ ..+.|.|..|+.+
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~--------Cl~p~l~~~-p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLD--------CHLPALQDV-PGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCST--------TSTTCCSSC-CCTTCCTTTTSCS
T ss_pred CcCccCCCCC-----ceeECCCCCchhccc--------cCCCCcccC-CCCCCCCcCccCC
Confidence 4599999764 488899996554433 322110011 2456899999865
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.78 E-value=5.6 Score=27.90 Aligned_cols=54 Identities=19% Similarity=0.466 Sum_probs=31.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcc---cccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCI---IDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~---~~~~~r~~Cr~CR~~K 117 (347)
..|.||++..+..--..+.|.+|-.-|.- .|-.---=. ....+.|.|+.|+.++
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~--------~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQ--------DCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEET--------TTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcC--------ccCCCcccccccCCCCCCeeCccccchh
Confidence 46999998754322347789999644332 232211000 0234678999998766
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.11 E-value=8.3 Score=26.24 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=28.7
Q ss_pred CcCcccCCC-CCCcccccccch--hhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhH
Q psy3092 56 HLCSICGDR-ASGKHYGVYSCE--GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116 (347)
Q Consensus 56 ~~C~VCg~~-a~g~HyGv~sC~--~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~ 116 (347)
..| |||.+ ..| -.+.|. .|...|.-....-..-. .+ -.......+.|..|+-.
T Consensus 17 ~~C-iC~~~~~~g---~MI~CD~~~C~~W~H~~CVgi~~~~--~~--~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 17 VRC-VCGNSLETD---SMIQCEDPRCHVWQHVGCVILPDKP--MD--GNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCC-SSCCCCCCS---CEEECSSTTTCCEEEHHHHSCCCTT--TC--SCSCSCSSCCCHHHHHC
T ss_pred EEe-ECCCcCCCC---CEEEECCccCCccccCEEEcccccc--cc--ccccCCCCEECCCCCcc
Confidence 569 89998 333 356899 89877665422111000 00 00012346788888754
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=44.44 E-value=11 Score=33.47 Aligned_cols=31 Identities=26% Similarity=0.694 Sum_probs=26.1
Q ss_pred CCcCcccCCCCCC---cccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRASG---KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a~g---~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+.-. ..||+..|-.|++..|..
T Consensus 37 n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 4679999976543 699999999999999874
No 104
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=44.37 E-value=5.2 Score=26.27 Aligned_cols=48 Identities=25% Similarity=0.572 Sum_probs=29.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..|.||++.. ..+.|.+|..-|.-. |-...-=.+ ..+.|.|..|+-++
T Consensus 9 ~~C~vC~~~g-----~ll~CD~C~~~fH~~--------Cl~ppl~~~-P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECAVCRDGG-----ELICCDGCPRAFHLA--------CLSPPLREI-PSGTWRCSSCLQAT 56 (66)
T ss_dssp CSBSSSSCCS-----SCEECSSCCCEECTT--------TSSSCCSSC-CSSCCCCHHHHHTC
T ss_pred CCCccCCCCC-----CEEEcCCCChhhccc--------ccCCCcCcC-CCCCeECccccCcc
Confidence 4699999853 478899997555433 332110011 23578999997544
No 105
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=43.76 E-value=70 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHhhcCCC
Q psy3092 269 ELVSKMREMKMDKTELGCLRTIILFNPDV 297 (347)
Q Consensus 269 ~l~~~l~~L~l~~~E~~lL~ai~l~~p~~ 297 (347)
.|+..+++|+|++.|+++|.-|..++...
T Consensus 20 ~LL~~y~~LgLs~~E~~lLl~L~~~~~~g 48 (135)
T 2v79_A 20 LLLTHYKQLGLNETELILLLKIKMHLEKG 48 (135)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999986543
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.61 E-value=7.2 Score=30.08 Aligned_cols=66 Identities=24% Similarity=0.555 Sum_probs=41.0
Q ss_pred CcCcccCCCCC-------Ccc--cccccchhhHHHHHhhhcCC-----Ccc--cccCCCC---cccccccccCchhhhhH
Q psy3092 56 HLCSICGDRAS-------GKH--YGVYSCEGCKGFFKRTVRKD-----LSY--ACREGRN---CIIDKRQRNRCQYCRYQ 116 (347)
Q Consensus 56 ~~C~VCg~~a~-------g~H--yGv~sC~~Ck~FFRR~v~~~-----~~~--~C~~~~~---C~~~~~~r~~Cr~CR~~ 116 (347)
-.|..||...+ -.| +++..|..|+.||.-.-... ..| .|..+|+ |. .|..+=-.
T Consensus 15 i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG~LlcCD-------~Cpr~Fh~ 87 (142)
T 2lbm_A 15 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCD-------FCHNAFCK 87 (142)
T ss_dssp CBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCSSEEECS-------SSCCEEEH
T ss_pred CEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCCcEEeCC-------CCCCeeeH
Confidence 46999997662 347 99999999999997653211 112 2444443 21 45555567
Q ss_pred HHHhcCcchhHH
Q psy3092 117 KCLNMGMKREAV 128 (347)
Q Consensus 117 KCl~vGM~~~~v 128 (347)
+|+..-+.++.+
T Consensus 88 ~Cl~p~l~~~~l 99 (142)
T 2lbm_A 88 KCILRNLGRKEL 99 (142)
T ss_dssp HHHHHHTCHHHH
T ss_pred hhcCCCCChhhh
Confidence 888765555443
No 107
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=42.86 E-value=10 Score=24.08 Aligned_cols=23 Identities=26% Similarity=0.892 Sum_probs=18.4
Q ss_pred CcCcccCCCCC-Ccccccccchhh
Q psy3092 56 HLCSICGDRAS-GKHYGVYSCEGC 78 (347)
Q Consensus 56 ~~C~VCg~~a~-g~HyGv~sC~~C 78 (347)
..|.|||.+.. -.-||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGl~lcR~c 42 (56)
T 3u5c_d 19 RQCRVCSSHTGLIRKYGLNICRQC 42 (56)
T ss_dssp CCCTTTCCCSSEECGGGCCEEHHH
T ss_pred ceeecCCCCcccccccCcchhHHH
Confidence 46999998743 258999999888
No 108
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=42.47 E-value=4.7 Score=38.04 Aligned_cols=52 Identities=17% Similarity=0.423 Sum_probs=28.1
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..| +|+.+..... -.+.|..|...|.-. |.+-..=.......+.|..|+-++
T Consensus 38 ~yC-~C~~~~d~~~-~MIqCd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNR-FMIECDICKDWFHGS--------CVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTS-CEEEBTTTCCEEEHH--------HHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCC-CeEEccCCCCceeee--------ecCcCcccccCCCEEECCCCcCCc
Confidence 457 8998753211 156788887665543 332211111222457888887644
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.44 E-value=50 Score=23.11 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=31.6
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKC 118 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~KC 118 (347)
..|.||++.... =-.+.|.+|..-|.-. |..-.-=.+ ..+.|.|..|+.++|
T Consensus 17 ~~C~vC~~~~~~--~~ll~CD~C~~~~H~~--------Cl~Ppl~~~-P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 17 YICQVCSRGDED--DKLLFCDGCDDNYHIF--------CLLPPLPEI-PRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCSSSCCSGGG--GGCEECTTTCCEECSS--------SSSSCCSSC-CSSCCCCHHHHHHHH
T ss_pred CCCccCCCcCCC--CCEEEcCCCCchhccc--------cCCCCcccC-CCCCcCCccCcCccc
Confidence 469999987421 1367899996544432 432110012 235789999998886
No 110
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=39.61 E-value=15 Score=23.19 Aligned_cols=23 Identities=30% Similarity=0.882 Sum_probs=19.0
Q ss_pred CcCcccCCCC-CCcccccccchhh
Q psy3092 56 HLCSICGDRA-SGKHYGVYSCEGC 78 (347)
Q Consensus 56 ~~C~VCg~~a-~g~HyGv~sC~~C 78 (347)
..|.|||.+- .-.-||..-|+-|
T Consensus 18 nrC~~cGr~rg~iRkfgl~lcR~c 41 (55)
T 2xzm_N 18 KECRVCGARQGLITKYEMMTCRRC 41 (55)
T ss_dssp CCCTTTCCSSTTCCCSSSCCCHHH
T ss_pred eEeecCCCCcchHHHhCCchhhHH
Confidence 5699999874 4469999999988
No 111
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.95 E-value=22 Score=27.88 Aligned_cols=72 Identities=24% Similarity=0.516 Sum_probs=41.9
Q ss_pred CCcCcccCCCC-CCc--ccccccchhhHHHHHhhhcCC-----Ccc--cccCCCCcccccccccCchhhhhHHHHhcCcc
Q psy3092 55 KHLCSICGDRA-SGK--HYGVYSCEGCKGFFKRTVRKD-----LSY--ACREGRNCIIDKRQRNRCQYCRYQKCLNMGMK 124 (347)
Q Consensus 55 ~~~C~VCg~~a-~g~--HyGv~sC~~Ck~FFRR~v~~~-----~~~--~C~~~~~C~~~~~~r~~Cr~CR~~KCl~vGM~ 124 (347)
...|..||... +-. .|+|.-|..|+-||....... ..| -|..++.-..= .-..|..|==.+|++.-+-
T Consensus 36 e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~Gg~l~~C--dn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 36 EDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC--GNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp GGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCCSEEEEC--SSTTTCCEEEHHHHHHHTC
T ss_pred cCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCCCeEEee--CCCCCCCchhHHHHHHhcC
Confidence 35699999753 333 499999999999999875322 122 24444422110 0124555555677775554
Q ss_pred hhHH
Q psy3092 125 REAV 128 (347)
Q Consensus 125 ~~~v 128 (347)
+..+
T Consensus 114 ~~~~ 117 (159)
T 3a1b_A 114 PGAA 117 (159)
T ss_dssp TTHH
T ss_pred HhHH
Confidence 4444
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=36.26 E-value=6.2 Score=28.69 Aligned_cols=58 Identities=19% Similarity=0.391 Sum_probs=31.8
Q ss_pred CcCcccCCCCCCcccccccch-hhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCE-GCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~-~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..|.+|+++-.... ..+.|. +|.-.|......-..-.=. .=....+..+.|..|+-++
T Consensus 4 ~~C~iC~~p~~~~~-~mi~Cdd~C~~WfH~~CVglt~~~~~---~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ-DAILCEASCQKWFHRECTGMTESAYG---LLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTS-CEEECTTTTCCEEEGGGTTCCHHHHH---HHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCC-CEEEecCCcccccccccCCcCHHHHH---hhccCCCCCEECccccCcC
Confidence 46999999843222 255676 9988887653322110000 0000123568999998654
No 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=36.10 E-value=19 Score=28.85 Aligned_cols=48 Identities=21% Similarity=0.548 Sum_probs=28.2
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
..|.||++... .+.|.+|..-|.- .|-...-=. ...+.|.|..|+-.+
T Consensus 5 ~~C~~C~~~g~-----ll~Cd~C~~~~H~--------~C~~p~l~~-~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGGE-----LLCCEKCPKVFHL--------SCHVPTLTN-FPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCSS-----CEECSSSSCEECT--------TTSSSCCSS-CCSSCCCCTTTSCSS
T ss_pred CccccCCCCCe-----eeecCCCCcccCc--------cccCCCCCC-CCCCCEECccccCcc
Confidence 45999997642 7899999643332 232111001 123568999998543
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=35.16 E-value=41 Score=23.44 Aligned_cols=9 Identities=56% Similarity=1.597 Sum_probs=7.8
Q ss_pred CcCcccCCC
Q psy3092 56 HLCSICGDR 64 (347)
Q Consensus 56 ~~C~VCg~~ 64 (347)
.+|+||||.
T Consensus 17 qiCqiCGD~ 25 (93)
T 1weo_A 17 QFCEICGDQ 25 (93)
T ss_dssp CBCSSSCCB
T ss_pred CccccccCc
Confidence 579999986
No 115
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.70 E-value=44 Score=22.22 Aligned_cols=24 Identities=33% Similarity=0.930 Sum_probs=14.7
Q ss_pred CcCcccCCCCCC---------cccccccchhhH
Q psy3092 56 HLCSICGDRASG---------KHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g---------~HyGv~sC~~Ck 79 (347)
..|..|+.+-.+ +|-.-..|..|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~ 48 (79)
T 1x62_A 16 PMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCG 48 (79)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTTTTSCSSSC
T ss_pred CccccCCCCccCcEEEECcceeCcCcCeeCCCC
Confidence 359999986543 354455555553
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.22 E-value=20 Score=27.21 Aligned_cols=47 Identities=26% Similarity=0.628 Sum_probs=30.7
Q ss_pred CcCcccCCCC-CCcccccccchhhHHHHHhhhcCCCcccccCCCCccc-----ccccccCchhhhhHH
Q psy3092 56 HLCSICGDRA-SGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCII-----DKRQRNRCQYCRYQK 117 (347)
Q Consensus 56 ~~C~VCg~~a-~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~-----~~~~r~~Cr~CR~~K 117 (347)
..|.+|+.+- .-.+-| ..|..|+ ...|+ +|.+ .+..-|.|.-|+.++
T Consensus 56 ~~C~~C~~~~g~l~~~g-~~C~~C~-----------~~VC~---~C~~~~~~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSAS-VVCEDCK-----------KNVCT---KCGVETSNNRPHPVWLCKICLEQR 108 (134)
T ss_dssp SBCSSSCCBCSTTSCCE-EECTTTC-----------CEEET---TSEEECCCSSSSCCEEEHHHHHHH
T ss_pred ccccccCCCcccccCCC-CCCCCCC-----------ccccc---ccCCccCCCCCccceechhhHHHH
Confidence 4699999765 222334 6788885 24565 3544 233468999999886
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.69 E-value=19 Score=27.20 Aligned_cols=67 Identities=24% Similarity=0.480 Sum_probs=39.7
Q ss_pred CcCcccCCCCC-------C--cccccccchhhHHHHHhhhcC-C----Ccc--cccCCCCcccccccccCchhhhhHHHH
Q psy3092 56 HLCSICGDRAS-------G--KHYGVYSCEGCKGFFKRTVRK-D----LSY--ACREGRNCIIDKRQRNRCQYCRYQKCL 119 (347)
Q Consensus 56 ~~C~VCg~~a~-------g--~HyGv~sC~~Ck~FFRR~v~~-~----~~~--~C~~~~~C~~~~~~r~~Cr~CR~~KCl 119 (347)
..|..||.... - -.|.|..|..|+.||...-.. + ..| .|..+|+-.. =..|..+=-.+|+
T Consensus 9 ~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dGG~Llc----Cd~Cpr~Fc~~Cl 84 (129)
T 3ql9_A 9 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLIC----CDFCHNAFCKKCI 84 (129)
T ss_dssp CBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCCSEEEE----CSSSSCEEEHHHH
T ss_pred eEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCCCCeeEe----cCCCchhhhHHHh
Confidence 46999998762 1 258999999999999876321 1 112 2333332100 0156666667888
Q ss_pred hcCcchh
Q psy3092 120 NMGMKRE 126 (347)
Q Consensus 120 ~vGM~~~ 126 (347)
..-+.+.
T Consensus 85 ~~~lg~~ 91 (129)
T 3ql9_A 85 LRNLGRR 91 (129)
T ss_dssp HHHTCHH
T ss_pred CCCcchh
Confidence 7544443
No 118
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=33.39 E-value=24 Score=24.81 Aligned_cols=23 Identities=30% Similarity=0.879 Sum_probs=18.4
Q ss_pred CcCcccCCCCCC-cccccccchhh
Q psy3092 56 HLCSICGDRASG-KHYGVYSCEGC 78 (347)
Q Consensus 56 ~~C~VCg~~a~g-~HyGv~sC~~C 78 (347)
..|..||..+-. .--|+-.|..|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C 60 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCC 60 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTT
T ss_pred CcCCCCCCceeeecccceEEcCCC
Confidence 469999987654 36788899999
No 119
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=33.34 E-value=4.9 Score=32.09 Aligned_cols=52 Identities=17% Similarity=0.473 Sum_probs=31.2
Q ss_pred CCcCcccCCCCCCcccc-cccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhHH
Q psy3092 55 KHLCSICGDRASGKHYG-VYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117 (347)
Q Consensus 55 ~~~C~VCg~~a~g~HyG-v~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~K 117 (347)
...| ||+.+... +| .+.|.+|...|.-. |.+-..=.......+.|..|+-.+
T Consensus 8 ~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~--------Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDE--SKFYIGCDRCQNWYHGR--------CVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCT--TSCEEECTTTCCEEEHH--------HHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCC--CCCEeECCCCCchhChh--------hcCCchhhccCccCeecCCCcchh
Confidence 3569 99987421 23 67899997666544 322111111224578999999876
No 120
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=31.17 E-value=18 Score=32.59 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=25.7
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|..|.+.-|-.
T Consensus 45 n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l 78 (368)
T 3jue_A 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSL 78 (368)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhcc
Confidence 56799999765 34699999999999998764
No 121
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.00 E-value=76 Score=21.54 Aligned_cols=24 Identities=33% Similarity=0.944 Sum_probs=14.8
Q ss_pred CcCcccCCCCCC---------cccccccchhhH
Q psy3092 56 HLCSICGDRASG---------KHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g---------~HyGv~sC~~Ck 79 (347)
..|..|+++-.+ +|-.-..|..|.
T Consensus 26 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~ 58 (89)
T 1x64_A 26 PLCDKCGSGIVGAVVKARDKYRHPECFVCADCN 58 (89)
T ss_dssp CBCTTTCCBCCSCCEESSSCEECTTTCCCSSSC
T ss_pred CCcccCCCEecccEEEECCceECccCCEecCCC
Confidence 469999986443 455555565553
No 122
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.71 E-value=18 Score=29.66 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=27.3
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~~ 116 (347)
..|.||++.. ..+.|.+|..-|.- .|-.-.-=. ...+.|.|..|+-.
T Consensus 8 ~~C~~C~~~g-----~ll~Cd~C~~~~H~--------~Cl~p~l~~-~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG-----DLLCCEKCPKVFHL--------TCHVPTLLS-FPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE-----EEEECSSSSCEECT--------TTSSSCCSS-CCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC-----ceEEcCCCCCccCC--------ccCCCCCCC-CCCCCEEeCceeCc
Confidence 4699999764 38899999643332 232111001 12346888888743
No 123
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=29.59 E-value=47 Score=21.00 Aligned_cols=18 Identities=39% Similarity=1.017 Sum_probs=13.1
Q ss_pred CcCcccCCCCCCcccccccchhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck 79 (347)
..|.+|+.++ ...|.+|+
T Consensus 16 ~~C~~C~~~~------~~~Cs~C~ 33 (60)
T 2dj8_A 16 ESCWNCGRKA------SETCSGCN 33 (60)
T ss_dssp CCCSSSCSCC------CEECTTTS
T ss_pred cccccCCCCC------cccCCCCC
Confidence 4699999853 45777775
No 124
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=29.05 E-value=22 Score=32.25 Aligned_cols=31 Identities=26% Similarity=0.704 Sum_probs=25.5
Q ss_pred CCcCcccCCCCC---CcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRAS---GKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a~---g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+.- ...||+..|-.|+|.-|..
T Consensus 34 N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 34 NARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 356999998653 4699999999999988865
No 125
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.90 E-value=13 Score=24.66 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=18.1
Q ss_pred CcCcccCCCCC---CcccccccchhhH
Q psy3092 56 HLCSICGDRAS---GKHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~---g~HyGv~sC~~Ck 79 (347)
..|.+||.+.. ...|--++.+.|+
T Consensus 10 ~~CP~Cgkp~~W~~~~~~rPFCSeRCr 36 (68)
T 1lv3_A 10 VNCPTCGKTVVWGEISPFRPFCSKRCQ 36 (68)
T ss_dssp EECTTTCCEEECSSSSSCCSSSSHHHH
T ss_pred CcCCCCCCcccccccCCCCcccCHHHH
Confidence 56999999853 4567777778885
No 126
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=27.03 E-value=36 Score=25.06 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=21.7
Q ss_pred CcCcccCCCCCC----cccccccchhhHHHHHhh
Q psy3092 56 HLCSICGDRASG----KHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 56 ~~C~VCg~~a~g----~HyGv~sC~~Ck~FFRR~ 85 (347)
..|..||-..+- -..|-.-|+||-.|++..
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMN 39 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhc
Confidence 569999965433 244667999999988754
No 127
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.46 E-value=42 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.695 Sum_probs=12.7
Q ss_pred CcCcccCCCCCCcccccccchhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck 79 (347)
..|..|+.+..-. .+.|+ |.
T Consensus 26 ~RC~~C~kkvgL~---~f~Cr-Cg 45 (74)
T 1wfp_A 26 TRCLSCNKKVGVT---GFKCR-CG 45 (74)
T ss_dssp CBCSSSCCBCTTT---CEECT-TS
T ss_pred ccchhhcCccccc---ceEec-cC
Confidence 5699999775333 35663 74
No 128
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.72 E-value=35 Score=22.81 Aligned_cols=24 Identities=33% Similarity=0.887 Sum_probs=17.7
Q ss_pred CcCcccCCCCCC-cccccccchhhH
Q psy3092 56 HLCSICGDRASG-KHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g-~HyGv~sC~~Ck 79 (347)
..|..||..+-. .--|+-.|+.|.
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred ccCCCCCCceeEecCCCeEECCCCC
Confidence 469999977644 356888888884
No 129
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.44 E-value=10 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.722 Sum_probs=22.9
Q ss_pred CcCcccCCCCCCcccccccch-hhHHHHHhhhc
Q psy3092 56 HLCSICGDRASGKHYGVYSCE-GCKGFFKRTVR 87 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~-~Ck~FFRR~v~ 87 (347)
.+|.+|+++...-. ..+.|. +|+-.|.+...
T Consensus 9 ~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQ-DAILCEASCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHHHH
T ss_pred CcCccCCCccCCCC-CeEecccCccccCchhcc
Confidence 45999999854322 457899 99998888743
No 130
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.36 E-value=16 Score=25.27 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=27.5
Q ss_pred CCcccccccchhhHHHHHhhh-----cCCCcccccC-CCCccc-ccccccCchhhhhH
Q psy3092 66 SGKHYGVYSCEGCKGFFKRTV-----RKDLSYACRE-GRNCII-DKRQRNRCQYCRYQ 116 (347)
Q Consensus 66 ~g~HyGv~sC~~Ck~FFRR~v-----~~~~~~~C~~-~~~C~~-~~~~r~~Cr~CR~~ 116 (347)
.|-+||+ .+|+.| .....|.|.. +++=.. ...+.+.|++|...
T Consensus 5 ~g~rYG~--------~lRk~vk~ie~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 5 FGARYGR--------VSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp GTTCSCH--------HHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cccccch--------HHHHHHHHHHHhccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 4668884 677775 3456899976 332222 23466899999874
No 131
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=22.97 E-value=32 Score=29.77 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=25.5
Q ss_pred CCcCcccCCCC---CCcccccccchhhHHHHHhh
Q psy3092 55 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKRT 85 (347)
Q Consensus 55 ~~~C~VCg~~a---~g~HyGv~sC~~Ck~FFRR~ 85 (347)
+..|.-||.+. ....||++.|-.|.+.-|..
T Consensus 42 n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 42 NSQCCDCGAADPTWLSTNLGVLTCIQCSGVHREL 75 (301)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhh
Confidence 46799999754 35799999999999998764
No 132
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.84 E-value=31 Score=20.91 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=14.9
Q ss_pred CcCcccCCCCCCcc--cccccchhhH
Q psy3092 56 HLCSICGDRASGKH--YGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g~H--yGv~sC~~Ck 79 (347)
..|.+||...--+. =|.+.|..|.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG 31 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCG 31 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccC
Confidence 35999987432222 2567888884
No 133
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.82 E-value=32 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.659 Sum_probs=12.4
Q ss_pred CcCcccCCCCCCcccccccchhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck 79 (347)
..|..|++...-. .+.| .|.
T Consensus 16 ~rC~~C~kkvgl~---~f~C-rCg 35 (64)
T 1wg2_A 16 NRCFSCNKKVGVM---GFKC-KCG 35 (64)
T ss_dssp CSCTTTCCCCTTS---CEEC-TTS
T ss_pred CcChhhCCccccc---CeEe-ecC
Confidence 4599999874322 3466 474
No 134
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.93 E-value=55 Score=20.28 Aligned_cols=46 Identities=20% Similarity=0.561 Sum_probs=27.7
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRY 115 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR~ 115 (347)
..|.||++.. ..+.|.+|..-|.-. |-...-=.+ ..+.+.|..|+-
T Consensus 10 ~~C~vC~~~g-----~ll~Cd~C~~~~H~~--------Cl~ppl~~~-p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKSG-----QLLMCDTCSRVYHLD--------CLDPPLKTI-PKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCSS-----CCEECSSSSCEECSS--------SSSSCCCSC-CCSSCCCHHHHC
T ss_pred CCCccCCCCC-----eEEEcCCCCcceECc--------cCCCCcCCC-CCCceEChhhhC
Confidence 4599999852 578899997555433 332110011 235688999864
No 135
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=21.85 E-value=41 Score=21.94 Aligned_cols=45 Identities=27% Similarity=0.656 Sum_probs=26.7
Q ss_pred CcCcccCCCCCCcccccccchhhHHHHHhhhcCCCcccccCCCCcccccccccCchhhh
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~~~~~~r~~Cr~CR 114 (347)
..|.||++... .+.|.+|..-|.-. |-.-.-= ....+.|.|..|+
T Consensus 13 ~~C~vC~~~~~-----ll~Cd~C~~~~H~~--------Cl~P~l~-~~P~g~W~C~~C~ 57 (66)
T 2lri_C 13 ARCGVCGDGTD-----VLRCTHCAAAFHWR--------CHFPAGT-SRPGTGLRCRSCS 57 (66)
T ss_dssp CCCTTTSCCTT-----CEECSSSCCEECHH--------HHCTTTC-CCCSSSCCCTTTT
T ss_pred CCcCCCCCCCe-----EEECCCCCCceecc--------cCCCccC-cCCCCCEECcccc
Confidence 35999998643 78899997555433 3221100 1123457899885
No 136
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=20.87 E-value=21 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=18.7
Q ss_pred CCCcCcccCCCCCCcccccccchhhH
Q psy3092 54 SKHLCSICGDRASGKHYGVYSCEGCK 79 (347)
Q Consensus 54 ~~~~C~VCg~~a~g~HyGv~sC~~Ck 79 (347)
....|.+||...... |-.-|.+|.
T Consensus 162 ~~~~C~~CGE~~~~~--g~~~C~~C~ 185 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ--DGELCLSCQ 185 (191)
T ss_dssp CEEECTTTCCEEEGG--GCSSCHHHH
T ss_pred CCEECCcCCCChhhC--CCcCCcccc
Confidence 345799999875444 899999995
No 137
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.33 E-value=49 Score=21.46 Aligned_cols=24 Identities=33% Similarity=0.717 Sum_probs=17.4
Q ss_pred CcCcccCCCCCCcccccccchhhH
Q psy3092 56 HLCSICGDRASGKHYGVYSCEGCK 79 (347)
Q Consensus 56 ~~C~VCg~~a~g~HyGv~sC~~Ck 79 (347)
-.|.-||..-.-.-...+-|.-|-
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG 45 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECG 45 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSC
T ss_pred EECCCCCCeeecCCCCceECCCCC
Confidence 469999987665556777787773
Done!