RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3092
(347 letters)
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 392 bits (1007), Expect = e-135
Identities = 223/349 (63%), Positives = 267/349 (76%), Gaps = 6/349 (1%)
Query: 3 PDTATLLVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICG 62
P T TL + S +S + S++ G + + +P + +KH+C+ICG
Sbjct: 85 PTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICG 144
Query: 63 DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMG 122
DR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYCRYQKCL MG
Sbjct: 145 DRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMG 204
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQA 182
MKREAVQEERQR K+R+ NEVESTS +MPVERILEAE V+ K E + + +
Sbjct: 205 MKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPS 264
Query: 183 T------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSIS 236
+ NIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+
Sbjct: 265 SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA 324
Query: 237 VKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD
Sbjct: 325 VKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD 384
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 385 SKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSI 433
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 311 bits (797), Expect = e-104
Identities = 100/377 (26%), Positives = 161/377 (42%), Gaps = 56/377 (14%)
Query: 21 SSFGSNNHSSSHNNGSSNSSIISPYPPNHPLC-GSKHLCSICGDRASGKHYGVYSCEGCK 79
+ + S + + P P C +CGD+ASG HYGV++CEGCK
Sbjct: 15 MYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCK 74
Query: 80 GFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERD 139
GFF+RT+R L Y R NC I K+ RN+CQYCR+QKCL +GM A++ R E++
Sbjct: 75 GFFRRTIRLKLIY-DRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKE 133
Query: 140 SNEVESTSGTLIEMPVERILEAEQR---------------------------------VD 166
E +S P L A + D
Sbjct: 134 KLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYD 193
Query: 167 MKQEPADQDIVNEQQATN---------------ICKATDKQLFQLVDWAKHIPHFTTLPL 211
M +D + + T + + + ++ ++AK IP F L L
Sbjct: 194 MNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDL 253
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYR---SSAHEAGVGGIFDRVLT 268
DQV LL+ G +E++ + S+ KDG+L++ G + G +
Sbjct: 254 NDQVTLLKYGVHEIIYTMLA--SLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKF- 310
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
E K +++D ++L +I+ + D GL + + +E +++ + +LE ++NH E
Sbjct: 311 EFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 370
Query: 329 PGRFAKLLLRLPSLRSI 345
FAKLL ++ LR I
Sbjct: 371 SQLFAKLLQKMTDLRQI 387
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 297 bits (761), Expect = e-100
Identities = 156/245 (63%), Positives = 184/245 (75%), Gaps = 9/245 (3%)
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
+ + KREAVQEERQR K+R+ NEVESTS +MPVERILEAE V+
Sbjct: 7 HHHHSSGLVPRG---SHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVE 63
Query: 167 MKQEPADQDIVNEQQAT------NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
K E + + ++ NIC+A DKQLF LV+WAK IPHF+ LPL+DQV+LLRA
Sbjct: 64 PKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRA 123
Query: 221 GWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMD 280
GWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDRVLTELVSKMR+M+MD
Sbjct: 124 GWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD 183
Query: 281 KTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLP 340
KTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + + E+PGRFAKLLLRLP
Sbjct: 184 KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 243
Query: 341 SLRSI 345
+LRSI
Sbjct: 244 ALRSI 248
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 268 bits (686), Expect = 8e-90
Identities = 139/202 (68%), Positives = 163/202 (80%), Gaps = 3/202 (1%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT--NICKATDKQLFQLVDWAKHI 203
TS +MP+ERI+EAE+RV+ P +VNE T NIC+AT KQLFQLV WAK +
Sbjct: 2 TSNLQADMPLERIIEAEKRVECND-PLVALVVNENNTTVNNICQATHKQLFQLVQWAKLV 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
PHFT+LPL DQV LLRAGWNELLIA+FSHRS+ +D I+LA G+TV +S+AH GVG I+
Sbjct: 61 PHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIY 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
DRVL+ELV+KM+EMKMDKTELGCLR IIL+NPDVRG+KS Q VEMLREK+Y LEEYTR
Sbjct: 121 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
H EPGRFAKLLLRLP+LRSI
Sbjct: 181 THPNEPGRFAKLLLRLPALRSI 202
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 259 bits (663), Expect = 3e-86
Identities = 139/206 (67%), Positives = 159/206 (77%), Gaps = 6/206 (2%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEP------ADQDIVNEQQATNICKATDKQLFQLVDW 199
TS +MPVERILEAE V+ K E TNIC+A DKQLF LV+W
Sbjct: 1 TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK IPHF+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGV
Sbjct: 61 AKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
G IFDRVLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + + E+PGRFAKLLLRLP+LRSI
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSI 206
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 256 bits (656), Expect = 1e-84
Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 27/260 (10%)
Query: 105 RQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMP------VERI 158
+ +++ Q+ ++ +QEE Q S L ++ +E++
Sbjct: 2 KHQHQHQHQH--------QHQQPLQEEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKL 53
Query: 159 LEAEQRVDMKQEPADQDI-------------VNEQQATNICKATDKQLFQLVDWAKHIPH 205
+ A+Q+ + + + +Q+ + + + ++VD+AK +P
Sbjct: 54 VAAQQQCNRRSFSDRLRVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPG 113
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F L EDQ+ LL+ E+++ S R + I + R +AG+ F
Sbjct: 114 FLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFIN 173
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+ E M E++++ E L I +F+ D ++ Q VE L+ +L Y ++H
Sbjct: 174 PIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHH 233
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
+ F ++L++L SLR++
Sbjct: 234 PHDRLMFPRMLMKLVSLRTL 253
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 251 bits (642), Expect = 4e-83
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 5/206 (2%)
Query: 145 STSGTLIEMPVERILEAEQRVDMKQEP-----ADQDIVNEQQATNICKATDKQLFQLVDW 199
S+ + +L+AE P D ++C++ +QL LV+W
Sbjct: 1 SSYELASLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEW 60
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGV 259
AK+IP F LPL+DQV LLRA E L+ + RS+ KD +LL V R A +
Sbjct: 61 AKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEM 120
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEE 319
+ R+L ELV +E+++D E L+ II F+PD +GL ++ LR +V SLE+
Sbjct: 121 SRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLED 180
Query: 320 YTRVNHSEEPGRFAKLLLRLPSLRSI 345
Y + GRF +LLL LP+L+SI
Sbjct: 181 YINDRQYDSRGRFGELLLLLPTLQSI 206
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 252 bits (645), Expect = 1e-82
Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 14/236 (5%)
Query: 123 MKREAVQEERQRTKERDSNEVESTSGTL---IEMPVERILEAEQRVDMKQEPADQDIVNE 179
M +E+V+ +R + K+ S + + S + ++ E+I +A Q + N
Sbjct: 1 MSKESVRNDRNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNS 60
Query: 180 ----------QQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
+ K + ++V++AK +P FT L + DQ+ LL+A ++LI
Sbjct: 61 SADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILR 120
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
R +D + + G+T+ R+ H AG G + D V +++ ++MD TE G L
Sbjct: 121 ICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF-TFANQLLPLEMDDTETGLLSA 179
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I L D + L+ V+ L+E + +L+ Y R +P F K+L+++ LRSI
Sbjct: 180 ICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSI 235
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 248 bits (634), Expect = 4e-81
Identities = 50/247 (20%), Positives = 102/247 (41%), Gaps = 12/247 (4%)
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
+ + R++ + G + ++ S S V+ L +
Sbjct: 26 DSYSDFVRFRPPVREGPVTRSASRAASL---HSLSDASSDSFNHSPESVDTKLNFSNLLM 82
Query: 167 MKQEPADQDIVNEQQA------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRA 220
M Q+ D E Q ++ + +++ +AK IP F L EDQ+ LL++
Sbjct: 83 MYQDSGSPDSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKS 142
Query: 221 GWNELLIASFSHRSISVKDGILL--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
E+++ + +S S++D P + +AG L + ++++K
Sbjct: 143 SAIEIIMLRSN-QSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLK 201
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLR 338
+ + E L I L +PD G++ +E L++++ L+ Y R+ H +AK++ +
Sbjct: 202 LHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKMIQK 261
Query: 339 LPSLRSI 345
L LRS+
Sbjct: 262 LADLRSL 268
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 243 bits (623), Expect = 2e-79
Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 17/262 (6%)
Query: 94 CREGRNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
R+ + DK + N C G+K+E + + S E
Sbjct: 26 KRKEKKAQKDKDKPNSTTSCSPD-----GIKQEIDPQRLDTDSQLLSVNGVKPITPEQEE 80
Query: 154 PVERILEAEQRVDMKQEPADQDIVN---------EQQATNICKATDKQLFQLVDWAKHIP 204
+ R++ + + + IVN E++ +I + T + +V+++K +P
Sbjct: 81 LIHRLVYFQNEYEHPSPEDIKRIVNAAPEEENVAEERFRHITEITILTVQLIVEFSKRLP 140
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
F L EDQ+ LL+A +E+++ + R + D IL A R S AG+G +
Sbjct: 141 GFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVE 200
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
+L M MK+D E L I++F+ + L VE ++E +L+ Y
Sbjct: 201 DLL-RFCRHMCAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENR 258
Query: 325 HS-EEPGRFAKLLLRLPSLRSI 345
FAKLL L LR++
Sbjct: 259 RKPYATTIFAKLLSVLTELRTL 280
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 241 bits (617), Expect = 5e-79
Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 27/221 (12%)
Query: 152 EMPVERILEAEQRVDMKQE-------PADQDIVNEQQA--TNICKATDKQLFQLVDWAKH 202
E+ +ER+LE E V E D ++ + +A +++C+ +KQ+ LV WA+
Sbjct: 5 ELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARD 64
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI------------------SVKDGILLA 244
IPHF+ L +EDQ+LL++ WNELL+ + + RS+ S + L
Sbjct: 65 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLM 124
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
PG+T++R+SA +AGVG IFDRVL+EL KMR +++D+ E L+ IIL NPDV+GLK++Q
Sbjct: 125 PGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQ 184
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE+LREK++ L+EY R + S E GRFA LLLRLP+LRSI
Sbjct: 185 EVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSI 225
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 239 bits (612), Expect = 2e-78
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 5/198 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFT 207
+ P +I+ + ++ A D T +C D++L ++ WAKHIP F+
Sbjct: 16 KKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFS 75
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
TL L DQ+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L
Sbjct: 76 TLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL 135
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+LV K + MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E
Sbjct: 136 -QLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHME 194
Query: 328 EPGRFAKLLLRLPSLRSI 345
+P R K+L+ LP LR
Sbjct: 195 DPRRAGKMLMTLPLLRQT 212
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 238 bits (608), Expect = 6e-78
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFT 207
+ IL+A + + + + ++ K +++L L++WAK++P +T
Sbjct: 4 KSQTVTILQALNKAALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVPGYT 63
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISV-KDGILLAPGVTVYRSSAHEAGVGGIFDRV 266
L L DQV L+ W ELL+ + + RSI + AP + + RSS + IF++V
Sbjct: 64 DLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQV 123
Query: 267 LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS 326
+ +M + + K EL L+ ++L N +VR L S + +++ + ++ + + H
Sbjct: 124 A-AVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHP 182
Query: 327 EEPGRFAKLLLRLPSLRSI 345
+ +LL L +R
Sbjct: 183 DNVRHVPAVLLLLTHIRQA 201
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 239 bits (611), Expect = 7e-78
Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 16/237 (6%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ 181
++ ++++ R R + + E + + + ++ A + D
Sbjct: 5 VVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANP 64
Query: 182 A-----------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+ + WA+ IP F LP DQ LL + + EL +
Sbjct: 65 DYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRL 124
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
++RS V+ ++ GV ++R G G D ++ E S ++ M +D + C+ +
Sbjct: 125 AYRSNPVEGKLIFCNGVVLHRLQCVR-GFGEWIDSIV-EFSSNLQNMNIDISAFSCIAAL 182
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH--SEEPGRFAKLLLRLPSLRSI 345
+ + GLK + VE L+ K+ L+++ N+ P +KLL +LP LR++
Sbjct: 183 AMVT-ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTL 238
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 237 bits (606), Expect = 2e-77
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFT 207
+ PV ++ V+ ++ A D +C D+++ + WAK IP F+
Sbjct: 16 QGPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFS 75
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
+L L DQ+ +L++ W E+L+ + RS+ ++D + A + + A AG+G + +L
Sbjct: 76 SLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALL 135
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH-- 325
+LV +++ +++++ E L+ + L N D ++ + VE LRE ++ +L EY
Sbjct: 136 -QLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGP 194
Query: 326 --SEEPGRFAKLLLRLPSLRSI 345
E R +LLL LP LR
Sbjct: 195 GGGAERRRAGRLLLTLPLLRQT 216
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 233 bits (597), Expect = 3e-76
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 145 STSGTLIEMPVERILEAEQ--------RVDMKQEPADQDIVNEQQATNICKATDKQLFQL 196
S+ G + + ++L+ E V QEPA + +C+ D+ +
Sbjct: 2 SSGGPNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISI 61
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISV--KDGILLAPGVTVYRSSA 254
VDWA+ F L + DQ+ LL+ W+ELL+ +R + +D ILL G V S+
Sbjct: 62 VDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTV 121
Query: 255 HEAGVGGIFDRV--LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREK 312
+ V ELV ++ +++D+ E CL+ +ILF+ DV+ L + +V+ +EK
Sbjct: 122 AVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEK 181
Query: 313 VYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L +YT ++ +F +LLL L +R++
Sbjct: 182 ANAALLDYTLSHYPHSGDKFQQLLLSLVEVRAL 214
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 232 bits (593), Expect = 1e-75
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 150 LIEMPVERILEAEQRVDMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFT 207
+I V+ I + E + + Q + +CK D+ LF VDWA++ F
Sbjct: 14 MIREFVQSIDDREWQTQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFK 73
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSI--SVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
L ++DQ+ LL+ W+++L+ H I + D L G S GV + D
Sbjct: 74 DLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDY 133
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
EL +K++++K D + C++ +IL NP VRG+ +++ V + V +L +YT +
Sbjct: 134 -FNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCY 192
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
+F L+ LP + ++
Sbjct: 193 PSVNDKFRGLVNILPEIHAM 212
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 232 bits (594), Expect = 2e-75
Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 38/238 (15%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT-----------NICKATDKQLF 194
T+ + +ERI+EAEQR + + + + +C+ +KQLF
Sbjct: 2 TNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLF 61
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG-------------- 240
Q+V++A+ +PHF +PL+DQV+LL+A W ELLIA+ + SI D
Sbjct: 62 QMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDG 121
Query: 241 -------------ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCL 287
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL CL
Sbjct: 122 SFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCL 181
Query: 288 RTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ IIL+NPD+RG+KS+ +EM REKVY L+E+ R+ H + GRFA+LLLRLP+LRSI
Sbjct: 182 KAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSI 239
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 231 bits (591), Expect = 6e-75
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 24/236 (10%)
Query: 120 NMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRV---------DMKQE 170
+ G+ E T E + +E++ +A Q
Sbjct: 11 SSGLVPRGSHESYTLTPE-------------VGELIEKVRKAHQETFPALCQLGKYTTNN 57
Query: 171 PADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIAS 229
++Q + + + + K + + V++AK +P FTTL + DQ+ LL+A ++LI
Sbjct: 58 SSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILR 117
Query: 230 FSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRT 289
R +D + + G+T+ R+ H AG G + D V +++ ++MD E G L
Sbjct: 118 ICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF-AFANQLLPLEMDDAETGLLSA 176
Query: 290 IILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
I L D + L+ V+ML+E + +L+ Y R P F K+L+++ LRSI
Sbjct: 177 ICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSI 232
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 230 bits (587), Expect = 9e-75
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 1/202 (0%)
Query: 145 STSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIP 204
S S + + + +L AE + N NIC+ + LF V+WA++IP
Sbjct: 2 SNSHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIP 61
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL-APGVTVYRSSAHEAGVGGIF 263
F L + DQV LLR W+EL + + + S+ + LL A G+ SA
Sbjct: 62 FFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDH 121
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
R+ E V K++ + +D E CL+ I+LF D GL VE L+EK +LEEY R
Sbjct: 122 IRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRS 181
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ +P RF KLLLRLPSLR++
Sbjct: 182 QYPNQPTRFGKLLLRLPSLRTV 203
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 227 bits (580), Expect = 9e-74
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFT 207
+ + I+++ + M QE ++ + E A + + + LV++ K +P F
Sbjct: 10 QTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQ 69
Query: 208 TLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVL 267
TL EDQ+ LL+ E + RS + + L + + +G+ + +
Sbjct: 70 TLDHEDQIALLKGSAVEAMF----LRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPM 125
Query: 268 TELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSE 327
+ E+KM + E L I++ +PD + +K ++ VE L+E + L++ +++ E
Sbjct: 126 FSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPE 185
Query: 328 EPGRFAKLLLRLPSLRSI 345
P FA LL RL LR+
Sbjct: 186 NPQHFACLLGRLTELRTF 203
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 226 bits (577), Expect = 6e-73
Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 18/238 (7%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQE----------- 170
G ++ +Q ++ N T+ + + R++ ++ + E
Sbjct: 1 GSHMASMTGGQQMGRDPLKNVPPLTANQ--KSLIARLVWYQEGYEQPSEEDLKRVTQTWQ 58
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
+ D ++ I + T + +V++AK +P F + DQ+ LL+A +E+++
Sbjct: 59 SDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRV 118
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ R + D +L A R + +AG+ + + +L M M MD L I
Sbjct: 119 ARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLL-HFCRCMYSMMMDNVHYALLTAI 177
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG---RFAKLLLRLPSLRSI 345
++F+ D GL+ +VE ++ +L Y +S P F K+L L +R++
Sbjct: 178 VIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTL 234
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 224 bits (573), Expect = 1e-72
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 151 IEMPVERILEAEQRV---------DMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWA 200
+E + ++ +A Q AD + + + K + ++V++A
Sbjct: 5 LEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFA 64
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
K +P FT L + DQ+ LL+A ++L+ R +D + + G+T+ R+ H AG G
Sbjct: 65 KRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 124
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
+ D V ++ ++MD TE G L I L D L+ + V+ L+E + +L Y
Sbjct: 125 PLTDLVF-AFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLY 183
Query: 321 TRVNHSEEPGRFAKLLLRLPSLRSI 345
R +P F ++L+++ LR I
Sbjct: 184 ARRRRPSQPYMFPRMLMKITDLRGI 208
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 226 bits (577), Expect = 1e-72
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 14/221 (6%)
Query: 137 ERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQL 196
+R + S T + V +L+AE + + + + D++L +
Sbjct: 2 KRSKKNSLALSLT-ADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHM 60
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE 256
++WAK +P F L L DQV LL W E+L+ RS+ +L AP + + R+
Sbjct: 61 INWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKC 120
Query: 257 -AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV--------RGLKSQQVVE 307
G+ IFD +L S+ R M + E CL++IIL N V + L+ + +
Sbjct: 121 VEGMVEIFDMLL-ATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIH 179
Query: 308 MLREKVYTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
+ +K+ +L + ++ R A+LLL L +R +
Sbjct: 180 RVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHM 220
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 223 bits (571), Expect = 4e-72
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 151 IEMPVERILEAEQRVDMKQEPADQDIVNEQQA----------TNICKATDKQLFQLVDWA 200
I + +L+ E Q + EQ +CK D+ LF +V+WA
Sbjct: 17 IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWA 76
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSI--SVKDGILLAPGVTVYRSSAHEAG 258
+ F L ++DQ+ LL+ W+ELLI +R + + I L G V S
Sbjct: 77 RSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 136
Query: 259 VGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTS 316
+ + ELV+K+R ++ D+ E CL+ ++LF+ DV+ L++ Q+VE ++E+V +
Sbjct: 137 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAA 196
Query: 317 LEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
L +YT N+ ++ +F +LLLRLP +R+I
Sbjct: 197 LLDYTMCNYPQQTEKFGQLLLRLPEIRAI 225
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 220 bits (561), Expect = 2e-70
Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 8/234 (3%)
Query: 116 QKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLI-EMPVERILEAEQRV-DMKQEPAD 173
+ + +K + + + + + S +I +M + E + + +
Sbjct: 9 KHLYDSYIKSF--PLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQ 66
Query: 174 QDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHR 233
V + + + + ++ ++AK IP F L L DQV LL+ G +E++ +
Sbjct: 67 SKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA-- 124
Query: 234 SISVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTII 291
S+ KDG+L++ G ++ D E K +++D ++L +I
Sbjct: 125 SLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVI 184
Query: 292 LFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ + D GL + + +E +++ + +LE ++NH E FAKLL ++ LR I
Sbjct: 185 ILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQI 238
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 219 bits (559), Expect = 2e-70
Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 3/189 (1%)
Query: 159 LEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
+ + +P T+ + Q++ + K +P F +LP+EDQ+ LL
Sbjct: 33 FRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLL 92
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMK 278
+ E+ + + ++ L + G F +L +R+++
Sbjct: 93 KGAAVEICHIVLN-TTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQ 151
Query: 279 MDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH--SEEPGRFAKLL 336
+ + E L + LF+PD G+ + ++ L+E++ +L+ Y + + +AKLL
Sbjct: 152 LQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLL 211
Query: 337 LRLPSLRSI 345
L LRSI
Sbjct: 212 GLLAELRSI 220
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 218 bits (557), Expect = 4e-70
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 8/200 (4%)
Query: 153 MPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLE 212
+ VE L ++ V K + IC++ + LF + WA+ IP F L +
Sbjct: 8 IEVEGPLLSDTHVTFKL-TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 66
Query: 213 DQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG-----VGGIFDRV- 266
L+RA WNEL + + + +LA V ++S E + + + +
Sbjct: 67 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIW 126
Query: 267 -LTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
L E + M ++ +D E L+ I+LF+PD GL S +E +E L++Y + +
Sbjct: 127 KLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATY 186
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
SE+ R A++L+RLP+LR +
Sbjct: 187 SEDTYRLARILVRLPALRLM 206
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 216 bits (553), Expect = 9e-70
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 6 EQLVLTLLEAEPPHVLISRPSAPF-TEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 64
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE-AGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 65 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLL-AT 123
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT--------- 321
S+ RE+K+ E C++ +IL N + L + K+ L T
Sbjct: 124 TSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 183
Query: 322 -RVNHSEEPGRFAKLLLRLPSLRSI 345
++ ++ R A LL+ L +R
Sbjct: 184 SGISSQQQSMRLANLLMLLSHVRHA 208
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 215 bits (550), Expect = 1e-69
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 171 PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D + + + ++V++AK IP F L DQV LL+AG E+L+ F
Sbjct: 11 YVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRF 70
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ + + + G H G G + + + E K+ +++ E+ +
Sbjct: 71 ASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMF-EFSEKLNALQLSDEEMSLFTAV 129
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L + D G+++ VE L+E + +L NH E F KLLL+LP LRS+
Sbjct: 130 VLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSL 184
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 220 bits (562), Expect = 1e-69
Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 111 QYCRYQKCLNMGMKREAVQEERQRTKERDSNEV----ESTSGTLIEMPVERILEAEQRVD 166
Y Y + +K E + +++S I + +L+ E
Sbjct: 68 GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEP 127
Query: 167 MKQEPADQDIVNEQQA----------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
Q + EQ +CK D+ LF +V+WA+ F L ++DQ+
Sbjct: 128 QVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMK 187
Query: 217 LLRAGWNELLIASFSHRSI--SVKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLTELVS 272
LL+ W+ELLI +R + + I L G V S + + ELV+
Sbjct: 188 LLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVA 247
Query: 273 KMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRF 332
K+R ++ D+ E CL+ ++LF+ DV+ L++ Q+VE ++E+V +L +YT N+ ++ +F
Sbjct: 248 KLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKF 307
Query: 333 AKLLLRLPSLRSI 345
+LLLRLP +R+I
Sbjct: 308 GQLLLRLPEIRAI 320
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 216 bits (553), Expect = 1e-69
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
+ V +L+AE + + + + D++L +++WAK +P F L L
Sbjct: 7 DQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTL 66
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE-AGVGGIFDRVLTEL 270
DQV LL W E+L+ RS+ +L AP + + R+ G+ IFD +L
Sbjct: 67 HDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLL-AT 125
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDV--------RGLKSQQVVEMLREKVYTSLEEYT- 321
S+ R M + E CL++IIL N V + L+ + + + +K+ +L
Sbjct: 126 SSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMA 185
Query: 322 --RVNHSEEPGRFAKLLLRLPSLRSI 345
+ ++ R A+LLL L +R +
Sbjct: 186 KAGLTLQQQHQRLAQLLLILSHIRHM 211
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 214 bits (545), Expect = 3e-68
Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Query: 142 EVESTSGTLIEMPVERILEAEQRV-----DMKQEPADQDIVNEQQATNICKATDKQLFQL 196
+ + S L PV + E + D + ++++ + + + KQ+ Q+
Sbjct: 2 SLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLL-----STLNRLAGKQMIQV 56
Query: 197 VDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVTVYRSSA 254
V WAK +P F LPLEDQ+ L++ W LL + S RS + L AP +
Sbjct: 57 VKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM 116
Query: 255 HEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQVVEMLREKV 313
H++ + + + ++ + +++ E ++ ++L + + GLKSQ E +R
Sbjct: 117 HQSAMYELCQG-MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNY 175
Query: 314 YTSLEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
L + N + RF +L L S+ +
Sbjct: 176 IKELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDL 210
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 212 bits (542), Expect = 9e-68
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 22/250 (8%)
Query: 103 DKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGT---LIEMPVERIL 159
D + + Y EA + K + + + + +E +
Sbjct: 1 DLKSLAKRIY-------------EAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLC 47
Query: 160 EAEQRVDMKQEP-ADQDIVNEQQATNIC-KATDKQLFQLVDWAKHIPHFTTLPLEDQVLL 217
AE+ + K Q+ E + + C + + + +L ++AK IP F L L DQV L
Sbjct: 48 MAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTL 107
Query: 218 LRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRV--LTELVSKMR 275
L+ G E + A S S+ KDG+L+A G ++ D + + K
Sbjct: 108 LKYGVYEAIFAMLS--SVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFN 165
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKL 335
+++D +++ I+ D GL + +E ++E + L + + NH ++ F KL
Sbjct: 166 ALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKL 225
Query: 336 LLRLPSLRSI 345
L ++ LR +
Sbjct: 226 LQKMADLRQL 235
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 213 bits (545), Expect = 2e-67
Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 19/243 (7%)
Query: 107 RNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVD 166
C + L + EA + + R L + V L E
Sbjct: 58 GVLSSGCELPESLQAPSREEAAKWSQVRKD-------------LCSLKVSLQLRGEDGSV 104
Query: 167 MKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNE 224
+P E + ++ + ++ +AK I +F LP+EDQ+ LL+ E
Sbjct: 105 WNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFE 164
Query: 225 LLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTEL 284
L F+ + G Y G + + + ++++++ + E
Sbjct: 165 LCQLRFNTVF--NAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEY 222
Query: 285 GCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSL 342
++ I LF+PD G+ +VV+ L+E+ +L+ Y N + R F K++ L L
Sbjct: 223 VLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTEL 282
Query: 343 RSI 345
RSI
Sbjct: 283 RSI 285
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 211 bits (539), Expect = 3e-67
Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 19/237 (8%)
Query: 122 GMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQ 181
G + ++ + + + ++ A D E
Sbjct: 1 GSSHH--HHHHSSGLVPRGSHMQPPDASPTNL-LTSLIRAHLDSGPNTAKLDYSKFQELV 57
Query: 182 A-----------TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
L + WA+ IP F L DQ LLL + + EL I
Sbjct: 58 LPRFGKEDAGDVQQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRL 117
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
++RS + ++ G+ ++R G G D +L + + +D CL +
Sbjct: 118 AYRSKPGEGKLIFCSGLVLHRLQCAR-GFGDWIDNIL-AFSRSLHSLGVDVPAFACLSAL 175
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEY--TRVNHSEEPGRFAKLLLRLPSLRSI 345
+L D GL+ + VE L+ ++ + L+E+ + ++LL +LP LR++
Sbjct: 176 VLIT-DRHGLQDPRRVEELQNRIASCLKEHMAAVAGDPQPASCLSRLLGKLPELRTL 231
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 210 bits (537), Expect = 3e-67
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 3/200 (1%)
Query: 146 TSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPH 205
L P A ++ + + + ++V++AKHIP
Sbjct: 33 AHDKLGSSP--GNFNANHASGSPYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPG 90
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F L DQV LL+AG E+L+ F+ ++ T G+G +
Sbjct: 91 FRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSA 150
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
+ + K+ + + + ELG ++L + D G+++ VE L+E + +L N
Sbjct: 151 MF-DFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNR 209
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E RF KLLL+LP LR++
Sbjct: 210 PLETSRFTKLLLKLPDLRTL 229
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 209 bits (534), Expect = 8e-67
Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 11/199 (5%)
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQAT------NICKATDKQLFQLVDWAKHIPHFTT 208
+ ++ + D EQ + + + + +A+ IP +
Sbjct: 16 ITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFD 75
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLT 268
L EDQ LL ++ EL + ++R+ ++ G ++R+ G + ++
Sbjct: 76 LLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLR-SFGEWLNDIM- 133
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
E + +++D + CL + L + GL+ + VE L+ K+ SL ++ N +
Sbjct: 134 EFSRSLHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQ 192
Query: 329 P--GRFAKLLLRLPSLRSI 345
F++LL +LP LRS+
Sbjct: 193 KKQHYFSRLLGKLPELRSL 211
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 210 bits (535), Expect = 9e-67
Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 11/211 (5%)
Query: 145 STSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWA 200
+ S + ++ ++ A D + T++ + ++QL +V W+
Sbjct: 2 TFSPGQDIQLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWS 61
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVTVYRSSAHEAG 258
K +P F L ++DQ+ L++ W L++ RS G +L AP + + E+
Sbjct: 62 KSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESS 121
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNP-DVRGLKSQQVVEMLREKVYTSL 317
+ + ++ + ++++ + E C++ ++L N + GL+SQ E +R L
Sbjct: 122 FYSLCLTMW-QIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIREL 180
Query: 318 EEYTRVNH---SEEPGRFAKLLLRLPSLRSI 345
+ + RF +L L +L +
Sbjct: 181 IKAIGLRQKGVVSSSQRFYQLTKLLDNLHDL 211
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 208 bits (532), Expect = 2e-66
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 129 QEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKA 188
QEE NE E S ++ + + ++ E + D++ +I +
Sbjct: 14 QEELIHRLVYFQNEYEHPSEEDVKRIINQPMDGEDQCDVR-------------FRHITEI 60
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
T + +V++AK +P F L EDQ+ LL+A +E+++ + R D IL
Sbjct: 61 TILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQP 120
Query: 249 VYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEM 308
R S + AG+G + +L M M++D E L I++F+ + L VE
Sbjct: 121 YSRDSYNLAGMGETIEDLL-HFCRTMYSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEK 178
Query: 309 LREKVYTSLEEYTRVNHSEEPGR-FAKLLLRLPSLRSI 345
++E +L Y +PG FAKLL L LR++
Sbjct: 179 IQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLTELRTL 216
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 208 bits (532), Expect = 3e-66
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 12/235 (5%)
Query: 122 GMKREAVQEERQRTKERDSNE-------VESTSGTLIEMPVERILEAEQRVDMKQEPA-- 172
G E + Q+ E E E+ T + + D+ Q P
Sbjct: 1 GSHMEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVS 60
Query: 173 --DQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASF 230
D D V+ + + K + ++VD+AK +P F+ LP EDQ++LL+ E++
Sbjct: 61 MPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRA 120
Query: 231 SHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTI 290
+ R D + L+ + V R G+G + D + EL + +D TE+ L+ +
Sbjct: 121 AVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIF-ELGKSLSAFNLDDTEVALLQAV 179
Query: 291 ILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+L + D GL +E +E + E Y P + KLL+++ LR I
Sbjct: 180 LLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 234
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 209 bits (533), Expect = 6e-66
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 7/212 (3%)
Query: 140 SNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDW 199
++ + S L PV + E + + + E + + + KQ+ Q+V W
Sbjct: 34 VPQLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKW 93
Query: 200 AKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVTVYRSSAHEA 257
AK +P F LPLEDQ+ L++ W LL + S RS + L AP + H++
Sbjct: 94 AKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQS 153
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQVVEMLREKVYTS 316
+ + + ++ + +++ E ++ ++L + + GLKSQ E +R
Sbjct: 154 AMYELCQG-MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKE 212
Query: 317 LEEYT---RVNHSEEPGRFAKLLLRLPSLRSI 345
L + N + RF +L L S+ +
Sbjct: 213 LRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDL 244
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 206 bits (526), Expect = 2e-65
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 4 EQLVLTLLEAEPPHVLISRPSAPF-TEASMMMSLTKLADKELVHMISWAKKIPGFVELSL 62
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHE-AGVGGIFDRVLTEL 270
DQV LL + W E+L+ RSI ++ AP + + R G+ IFD +L
Sbjct: 63 FDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLL-AT 121
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT--------- 321
S+ RE+K+ E C++ +IL N + L + K+ L T
Sbjct: 122 TSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 181
Query: 322 -RVNHSEEPGRFAKLLLRLPSLRSI 345
++ ++ R A LL+ L +R
Sbjct: 182 SGISSQQQSMRLANLLMLLSHVRHA 206
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 202 bits (515), Expect = 1e-63
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 8/209 (3%)
Query: 144 ESTSGTLIEMPVERILEA-EQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKH 202
G + +LEA E V +Q +++ + ++QL +V WAK
Sbjct: 12 SHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKA 71
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVTVYRSSAHEAGVG 260
+P F L ++DQ+ +++ W L++ + RS + + +L AP + H++ +
Sbjct: 72 LPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMY 131
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFN-PDVRGLKSQQVVEMLREKVYTSLEE 319
R+ L + +++ E C++ ++LF+ V GLK+Q+ + LR L+
Sbjct: 132 SQCVRMR-HLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDR 190
Query: 320 YT---RVNHSEEPGRFAKLLLRLPSLRSI 345
R N + RF +L L S++ I
Sbjct: 191 IIACKRKNPTSCSRRFYQLTKLLDSVQPI 219
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 199 bits (507), Expect = 1e-62
Identities = 37/190 (19%), Positives = 81/190 (42%), Gaps = 3/190 (1%)
Query: 159 LEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLL 218
RV+ ++ ++ + +++ +AK IP F L EDQ++LL
Sbjct: 35 FRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLL 94
Query: 219 RAGWNELLIASFSHRSISVKDGILLAPGVTVYR-SSAHEAGVGGIFDRVLTELVSKMREM 277
++ E+++ + YR S +AG L + ++++
Sbjct: 95 KSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKL 154
Query: 278 KMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR--FAKL 335
+ + E L I + +PD G++ ++E +++++ +L+ Y R H +AK+
Sbjct: 155 NLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKM 214
Query: 336 LLRLPSLRSI 345
+ +L LRS+
Sbjct: 215 IQKLADLRSL 224
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 199 bits (508), Expect = 1e-62
Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 13/236 (5%)
Query: 121 MGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQ 180
MG E V +LEAE + P+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPF-TEAS 59
Query: 181 QATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG 240
++ K DK+L ++ WAK IP F L L DQV LL + W E+L+ RSI
Sbjct: 60 MMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGK 119
Query: 241 ILLAPGVTVYRSSAHE-AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRG 299
++ AP + + R G+ IFD +L S+ RE+K+ E C++ +IL N +
Sbjct: 120 LIFAPDLVLDRDEGKCVEGILEIFDMLL-ATTSRFRELKLQHKEYLCVKAMILLNSSMYP 178
Query: 300 LKSQQVVEMLREKVYTSLEEYT----------RVNHSEEPGRFAKLLLRLPSLRSI 345
L + K+ L T ++ ++ R A LL+ L +R
Sbjct: 179 LVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHA 234
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 199 bits (506), Expect = 2e-62
Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 35/244 (14%)
Query: 129 QEERQRTKERDS--NEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQATNIC 186
+E+ Q+ + T T E P +A P Q ++ + +C
Sbjct: 2 EEQPQQISVASGTPVSADQTPATPQEQPRAPWWDAS--------PGVQRLITLKDPQVVC 53
Query: 187 KATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPG 246
+A L + + + K++P F LPL+ Q++L+R+ W LL+ + + + +
Sbjct: 54 EAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETN 113
Query: 247 V---------------------TVYRSSAHEAGVGGIFD----RVLTELVSKMREMKMDK 281
+ A G + + + K + +D
Sbjct: 114 TTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDT 173
Query: 282 TELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPS 341
E L+ +LFNPD+ GL+ + +E L+ + L E+ R+ E R A+L L
Sbjct: 174 KEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFL 233
Query: 342 LRSI 345
LR I
Sbjct: 234 LRFI 237
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 197 bits (503), Expect = 7e-62
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 140 SNEVESTSGTLIEMPVERILEAEQRV-----DMKQEPADQDIVNEQQATNICKATDKQLF 194
S+ V + L V + E V D + I+ T + +Q+
Sbjct: 2 SHMVPAALPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIM-----TTLNMLGGRQVI 56
Query: 195 QLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL--APGVTVYRS 252
V WAK IP F L L+DQ+ LL+ W L++ + RS G LL AP + +
Sbjct: 57 AAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQ 116
Query: 253 SAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-GLKSQQVVEMLRE 311
+ +L + ++++ +++ E C++T++L + + GLKSQ++ + +R
Sbjct: 117 RMTLPCMYDQCKHML-FISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRM 175
Query: 312 KVYTSLEEY---TRVNHSEEPGRFAKLLLRLPSLRSI 345
L + N S+ RF +L L S+ +
Sbjct: 176 TYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDV 212
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear
receptor, protein-DNA complex, transcripti complex;
3.00A {Homo sapiens} SCOP: g.39.1.2
Length = 99
Score = 191 bits (487), Expect = 9e-62
Identities = 78/96 (81%), Positives = 89/96 (92%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 114 RYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGT 149
RYQKCL MGMKREAVQEERQR K+R+ NEVESTS
Sbjct: 62 RYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSA 97
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 196 bits (499), Expect = 7e-61
Identities = 38/193 (19%), Positives = 85/193 (44%), Gaps = 5/193 (2%)
Query: 157 RILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVL 216
R R+D D+ ++ + +++ +AK IP F L +DQ++
Sbjct: 36 RDFRPPVRMDGSTGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIV 95
Query: 217 LLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRS--SAHEAGVGGIFDRVLTELVSKM 274
LL++ E+++ + +S ++ D +AG L + +
Sbjct: 96 LLKSSAIEVIMLRSN-QSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGL 154
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRF 332
+++ + + E L I + +PD G++ ++VE +++++ +L+ Y R H +
Sbjct: 155 KKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLY 214
Query: 333 AKLLLRLPSLRSI 345
AK++ +L LRS+
Sbjct: 215 AKMIQKLADLRSL 227
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 179 bits (457), Expect = 3e-57
Identities = 81/89 (91%), Positives = 82/89 (92%)
Query: 48 NHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQR 107
NHPL GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YACRE RNCIIDKRQR
Sbjct: 3 NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQR 62
Query: 108 NRCQYCRYQKCLNMGMKREAVQEERQRTK 136
NRCQYCRYQKCL GMKREAVQEERQ
Sbjct: 63 NRCQYCRYQKCLTCGMKREAVQEERQGIH 91
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 185 bits (471), Expect = 5e-57
Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 4/195 (2%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQ-LVDWAKHIPHFTTLP 210
+ E + + + +++E + + +C + Q +V++AK I F L
Sbjct: 36 QYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELC 95
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
DQ++LL+AG E++ R+ ++ + G G V E
Sbjct: 96 QNDQIVLLKAGSLEVVFIRMC-RAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVF-EF 153
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
+ M + + E+ +L + D L+ + +E L++K+ +L+ + NH E G
Sbjct: 154 GKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDG 212
Query: 331 RFAKLLLRLPSLRSI 345
KL+ ++ +LR++
Sbjct: 213 ILTKLICKVSTLRAL 227
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 183 bits (465), Expect = 2e-56
Identities = 36/191 (18%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 156 ERILEAEQRVDMKQEPADQDIVNEQQATNIC-KATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
E + + + +E + + C + +V++AK I F L DQ
Sbjct: 25 EELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQ 84
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+LLL++G E+++ + + +L G G + + + +
Sbjct: 85 ILLLKSGCLEVVLVRMCRAF-NPLNNTVLFEGKYGGMQMFKALGSDDLVNEAF-DFAKNL 142
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+++ + E+ + +L +PD L + V+ L+EK+Y +L+ + NH ++ AK
Sbjct: 143 CSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAK 201
Query: 335 LLLRLPSLRSI 345
L+ ++P++ ++
Sbjct: 202 LIAKIPTITAV 212
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A
1r0o_A 2nll_A*
Length = 85
Score = 177 bits (450), Expect = 2e-56
Identities = 69/82 (84%), Positives = 78/82 (95%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQY
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 62
Query: 113 CRYQKCLNMGMKREAVQEERQR 134
CRYQKCL MGMKREAVQEERQR
Sbjct: 63 CRYQKCLAMGMKREAVQEERQR 84
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
DNA- binding domain, transcription factor, FTZ-F1,
C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Length = 113
Score = 175 bits (445), Expect = 3e-55
Identities = 48/86 (55%), Positives = 61/86 (70%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ LC +CGD+ SG HYG+ +CE CKGFFKRTV+ + Y C E +NC IDK QR RC Y
Sbjct: 7 DLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPY 66
Query: 113 CRYQKCLNMGMKREAVQEERQRTKER 138
CR+QKCL++GMK EAV+ +R R
Sbjct: 67 CRFQKCLSVGMKLEAVRADRMRGGRN 92
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A*
3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A*
3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A
2gda_A 1rgd_A ...
Length = 90
Score = 173 bits (441), Expect = 6e-55
Identities = 38/86 (44%), Positives = 51/86 (59%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
H+C +C D ASG HYGV +C CK FFKR V +Y C +CIIDK +R C CR
Sbjct: 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACR 61
Query: 115 YQKCLNMGMKREAVQEERQRTKERDS 140
Y+KCL GM EA + +++ + +
Sbjct: 62 YRKCLQAGMNLEARKTKKKIKGIQQA 87
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 173 bits (440), Expect = 1e-54
Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ C
Sbjct: 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 62
Query: 114 RYQKCLNMGMKREAVQEERQRT-KERDSNEVESTS 147
R+ K L +GM +E V+ +R R +++ ++S +
Sbjct: 63 RFMKALKVGMLKEGVRLDRVRGGRQKYKRRLDSEN 97
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc, EAR3,
erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 172 bits (439), Expect = 1e-54
Identities = 48/81 (59%), Positives = 62/81 (76%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
S C +CGD++SGKHYG ++CEGCK FFKR+VR++L+Y CR RNC ID+ RN+CQY
Sbjct: 5 SSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQY 64
Query: 113 CRYQKCLNMGMKREAVQEERQ 133
CR +KCL +GM+REAVQ
Sbjct: 65 CRLKKCLKVGMRREAVQRGSG 85
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 172 bits (439), Expect = 1e-54
Identities = 43/83 (51%), Positives = 62/83 (74%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR
Sbjct: 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCR 63
Query: 115 YQKCLNMGMKREAVQEERQRTKE 137
QKC +GM +E+V+ +R + K+
Sbjct: 64 LQKCFEVGMSKESVRNDRNKKKK 86
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
response gene product, transcription factor, monomeric
protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 89
Score = 172 bits (438), Expect = 2e-54
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD AS +HYGV +CEGCKGFFKRTV+K Y C ++C +DKR+RNRCQ+CR+QK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 118 CLNMGMKREAVQEERQRTKER 138
CL +GM +E V+ + + +
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRG 83
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
reverb, REV- ERB, transcription regulation,
transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Length = 94
Score = 172 bits (437), Expect = 3e-54
Identities = 45/91 (49%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 50 PLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA-CREGRNCIIDKRQRN 108
L G LC +CGD ASG HYGV +CEGCKGFF+R++++++ Y C + NC I + RN
Sbjct: 2 KLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRN 61
Query: 109 RCQYCRYQKCLNMGMKREAVQEERQRTKERD 139
RCQ CR++KCL++GM R+AV+ R +E+
Sbjct: 62 RCQQCRFKKCLSVGMSRDAVRFGRIPKREKQ 92
>2han_B Ecdysone receptor; transcription regulation, transcription factor,
DNA-binding, nuclear protein, nuclear receptor, zinc
finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
PDB: 1r0o_B 1r0n_B
Length = 119
Score = 171 bits (435), Expect = 1e-53
Identities = 44/104 (42%), Positives = 59/104 (56%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+ LC +CGDRASG HY +CEGCKGFF+R+V K Y C+ GR C +D R +CQ
Sbjct: 6 VQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQE 65
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVE 156
CR +KCL +GM+ E V E Q +R + + + P
Sbjct: 66 CRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSS 109
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 169 bits (430), Expect = 2e-53
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C IDK +R CQ C
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQAC 62
Query: 114 RYQKCLNMGMKREAVQEERQR 134
R +KC +GM + ++++R+
Sbjct: 63 RLRKCYEVGMMKGGIRKDRRG 83
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain,
nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 169 bits (429), Expect = 3e-53
Identities = 49/76 (64%), Positives = 63/76 (82%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LC+ICGDRA+GKHYG SC+GCKGFF+R+VRK+ Y+CR R C++DK +RN+C+YCR +
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLK 61
Query: 117 KCLNMGMKREAVQEER 132
KC GMK+EAVQ ER
Sbjct: 62 KCFRAGMKKEAVQNER 77
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
transcription/DNA complex; 3.10A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 105
Score = 166 bits (423), Expect = 5e-52
Identities = 35/95 (36%), Positives = 47/95 (49%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
+ C ICGD ASG HYG +C CK FFKR Y C +C IDK +R C CR
Sbjct: 7 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCR 66
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGT 149
+KC GM A + ++ + S++G+
Sbjct: 67 LRKCYEAGMTLGARKLKKLGNLKLQEEGENSSAGS 101
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 170 bits (433), Expect = 1e-51
Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 6/195 (3%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLP 210
++ +E +L + ++E + + + + +V++AK + F L
Sbjct: 27 QLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELC 86
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
DQ++LL+AG E+++ R+ + + + G G + + +
Sbjct: 87 QNDQIVLLKAGAMEVVLVRMC-RAYNADNRTVFFEGKYGGMELFRALGCSELISSIF-DF 144
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
+ + + E+ ++L N GL+ ++ VE L+ + + + H
Sbjct: 145 SHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTH---RQ 201
Query: 331 RFAKLLLRLPSLRSI 345
L LRS+
Sbjct: 202 SILAKLPPKGKLRSL 216
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 165 bits (420), Expect = 1e-51
Identities = 32/106 (30%), Positives = 59/106 (55%)
Query: 53 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQY 112
+C +CGDRA+G H+ +CEGCKGFF+R++++ + C +C I K R CQ
Sbjct: 4 NVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQA 63
Query: 113 CRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERI 158
CR ++C+++GM +E + + + ++R+ L + ++
Sbjct: 64 CRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKL 109
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 169 bits (430), Expect = 3e-51
Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 12/206 (5%)
Query: 152 EMPVERILEAEQRVDMKQE---PADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTT 208
++ I EA + ++ E A + NE+ +I D + + V AK +P F
Sbjct: 10 LQALDLIQEAFKGMNDPMEQGRQATSFLKNEKSPADIMNIMDVTMRRFVKMAKRLPAFND 69
Query: 209 LPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL---LAPGVTVYRSSAHEAGVGGIFDR 265
L + + LL+ G E+L R S L V + + ++
Sbjct: 70 LSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQ 129
Query: 266 V--LTELVSKMRE-MKMDKTELGCLRTIILFNPD--VRGLKSQQVVEMLREKVYTSLEEY 320
+ E ++ + + + I+LF+P + + ++++ E+ L Y
Sbjct: 130 KMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPRDSITDPEDRRIIARHHEQFSALLNRY 189
Query: 321 TRVNHSEEPGR-FAKLLLRLPSLRSI 345
+ ++ + +L L LR I
Sbjct: 190 LESLYGDDAHQLNEQLPTALRMLREI 215
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 164 bits (418), Expect = 3e-51
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL--SYACREGRNCIIDKRQRNRCQYCR 114
LC +CGD+A+G HY +CEGCKGFF+RT++K+L SY+C+ C+IDK RN+CQ CR
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 62
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
++KC+ +GM + V ++ +R +R E E+
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREEL 101
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 157 bits (397), Expect = 2e-46
Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 12/206 (5%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQA---TNICKATDKQLFQLVDWAKHIPHFTT 208
++ I ++ Q ++ + Q ++ T+I D + +LV AK + F
Sbjct: 10 LKELDSIRDSFQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNE 69
Query: 209 LPLEDQVLLLRAGWNELLIASFSHR----SISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
+ + LL+ G E+L + + ++ +
Sbjct: 70 ISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQK 129
Query: 265 RVLTELVSKMRE-MKMDKTELGCLRTIILFNPDVRGLKSQQ---VVEMLREKVYTSLEEY 320
+ + + ++ + + + ++LF+ GL SQQ VE L + L Y
Sbjct: 130 KGFLHFFNLLHSDVRKNDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRY 189
Query: 321 TRVNHSEE-PGRFAKLLLRLPSLRSI 345
H EE RFA + L +LR +
Sbjct: 190 LYSIHKEEAEQRFASIPKALVALRKV 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 6e-08
Identities = 47/309 (15%), Positives = 97/309 (31%), Gaps = 88/309 (28%)
Query: 76 EGCKGFFKRTVRKD-------LSYACRE-GRNCIIDKRQRNRCQ--------Y--CRYQK 117
E + F + +R + + R+ + QR+R Y R Q
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIE-MP----------VERILEAEQR-- 164
L + R+A+ E R LI+ + V + + +
Sbjct: 137 YLKL---RQALLELR------------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 165 -----VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPH------------FT 207
+++K + + ++ Q + D D + +I
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 208 TLPLEDQVLLLRAGWNELLIASFSH--------RSISVKDGILLAPGVTVYRSSAHEAGV 259
+ P E+ +L+L N +F+ R V D L+ T + S H +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHS-- 295
Query: 260 GGIFDRVLTELVSKMREMKMDKTELGCL-RTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
+ + L+ K + + L R ++ NP + + E +R+ + T +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRRLSI----IAESIRDGLAT-WD 345
Query: 319 EYTRVNHSE 327
+ VN +
Sbjct: 346 NWKHVNCDK 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 80/229 (34%)
Query: 104 KRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAE- 162
K +R R Y M E + + + +T++ E ++ + +
Sbjct: 1680 KGKRIRENY--------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 163 -QRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKH--IP-------H----FT- 207
Q PA + +K F+ D IP H +
Sbjct: 1732 TQ-------PA---LT----------LMEKAAFE--DLKSKGLIPADATFAGHSLGEYAA 1769
Query: 208 ------TLPLEDQVLLLRA-GWNELLIASFSHRSISVKDG---ILLAPGVTVYRSSAHEA 257
+ +E V ++ G + + R + I + PG V S + EA
Sbjct: 1770 LASLADVMSIESLVEVVFYRG---MTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQEA 1825
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
L +V ++ + G L I+ +N V QQ V
Sbjct: 1826 ---------LQYVVERVGK------RTGWLVEIVNYN--VEN---QQYV 1854
Score = 37.3 bits (86), Expect = 0.007
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 56/156 (35%)
Query: 155 VERILEAEQRVDMKQEPADQDI-V-NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLE 212
+ I + + ++ D I V + +++ + ++VD LP++
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI------IRLPVK 489
Query: 213 DQVLLLRAGWNELLIASFSHRSISVKDGIL-LAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
W +H IL PG +G+G L
Sbjct: 490 ---------WETTTQFKATH--------ILDFGPGGA--------SGLGV--------LT 516
Query: 272 SKMREMKMDKTELGC-LRTIIL----FNPDVR-GLK 301
+ ++ G +R I+ NPD G K
Sbjct: 517 HRNKD--------GTGVRVIVAGTLDINPDDDYGFK 544
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.066
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 27/79 (34%)
Query: 125 REAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDI------VN 178
R+ +E+R+R +E D+ + +++ A +D+ +
Sbjct: 88 RKWREEQRKRLQELDAA------------------SKVMEQEWREK-AKKDLEEWNQRQS 128
Query: 179 EQQATNIC--KATDKQLFQ 195
EQ N + DK +Q
Sbjct: 129 EQVEKNKINNRIADKAFYQ 147
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 29.1 bits (65), Expect = 0.50
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 40 SIISPYPPNHPL---CGSKHLCSICGDRASGKHYGVYSCEGCK 79
+ H L + C C + + Y C+ C
Sbjct: 29 KVKHVLHEEHELELTRVQVYTCDKCEEEGTIW---SYHCDECD 68
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 30.3 bits (69), Expect = 0.75
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 201 KHIPHFTTLPLEDQV--LLLRAGWNE-LLIASFSHRSI--------SVKDGILLAPGVTV 249
K +E+++ + + E ++I+SF+H S+ +K G+L G+
Sbjct: 121 KS-GIVLYPGIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLVE 179
Query: 250 YRSSAHEAGVGGI---FDRVLTELVSKMREMKM 279
A + + ++ ELV ++ +
Sbjct: 180 PWHMALRMEAYSLHPFYFNIIPELVEGCKKNGV 212
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.90
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 22/49 (44%)
Query: 301 KSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSL---RSIE 346
+ Q + +K+ SL+ Y A P+L ++E
Sbjct: 18 EKQAL-----KKLQASLKLY-------ADDS-A------PALAIKATME 47
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNE---LLIASFSHRSI--------SVKDGILLAPGVTV 249
K + V +L+ W + LL +SF++ ++ + G ++ +
Sbjct: 119 KPCEGLEEETIAASVEVLKQHWPQDLPLLFSSFNYFALVSAKALWPEIARGYNVSAIPSA 178
Query: 250 YRSSAHEAGVGGI---FDRVLTELVSKMREMKMD 280
++ G+ + VS ++
Sbjct: 179 WQERLEHLDCAGLHIHQSFFDVQQVSDIKAAGYK 212
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 29.7 bits (65), Expect = 1.6
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
HP L +C D +C K K T+ + L AC G
Sbjct: 746 HPEKEDGKLNKLCRDELCRCAEE--NCFIQKSDDKVTLEERLDKACEPG 792
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 28.2 bits (62), Expect = 2.5
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 13 NSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL 57
+ G A+ +F +H + N + + P + G H
Sbjct: 53 SQGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHF 97
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics,
PSI-2, protein structure initiative; 2.60A {Geobacter
metallireducens gs-15}
Length = 112
Score = 27.0 bits (60), Expect = 3.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 103 DKRQRNRCQYC 113
++ R C YC
Sbjct: 31 NRIARGICHYC 41
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 28.6 bits (62), Expect = 3.8
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 49 HPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREG 97
HP L +C +C + T+ L AC G
Sbjct: 1492 HPDKEDGMLSKLCHKDTCRC--AEENCFMHHTEKEVTLEDRLDKACEPG 1538
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 28.0 bits (63), Expect = 4.3
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 41/146 (28%)
Query: 201 KHIPHFTTLPLEDQVLLLRAGW---NELLIASFSHRSIS-VKDGILLAPGVTVYRSSAHE 256
K L + L R W L++SF ++ + AP +
Sbjct: 116 KPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQQ---AAPELP-------- 164
Query: 257 AGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLRE---KV 313
G + D + + + + + L + V L++ ++
Sbjct: 165 --RGLLLDEWRDDWRELTARLGCV-----------SIHLNHKLL-DKARVMQLKDAGLRI 210
Query: 314 YTSLEEYTRVNHSEEPGRFAKLLLRL 339
YT VN + A LLR
Sbjct: 211 LV----YT-VNKPQH----AAELLRW 227
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 27.1 bits (60), Expect = 4.6
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 24 GSNNHSSSHNNGSSNSSIISPYPPNHP------LCGSKHL-CSICGDRASGKHYGVY 73
GS++H H++G + + + P + + G G G++
Sbjct: 2 GSSHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAG----GNDVGIF 54
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 28.1 bits (62), Expect = 4.7
Identities = 13/158 (8%), Positives = 39/158 (24%), Gaps = 1/158 (0%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C CG G + C+ C + ++ C +
Sbjct: 116 CDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVLI 175
Query: 118 CLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIV 177
+ K + + ++ + + + I + +
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 178 NEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
++ + ++ + D L D+ + + + V
Sbjct: 236 DKDRRLSV-EIWDWDLTSRNDFMGSLSFGISELQKAGV 272
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 27.9 bits (63), Expect = 5.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 297 VRGLKSQQVVEMLRE----KVY 314
VRG S+Q++EM RE KVY
Sbjct: 370 VRGTTSEQIIEMAREAGAKKVY 391
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 28.0 bits (63), Expect = 5.6
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDV-RGLKSQQVVEML 309
R +A EA +V + + ++ NP G Q +
Sbjct: 400 RKTALEAKQLQATQKVDIRQTMADPFFDSVRDRV----VGLVNNPINFTGRCVSQTESFI 455
Query: 310 REKVYTSLEEY 320
+++ ++++Y
Sbjct: 456 AKELKPTIDKY 466
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing
fold, splice variant, A buffer, metal binding protein;
1.70A {Homo sapiens} SCOP: d.290.1.2
Length = 316
Score = 27.7 bits (61), Expect = 5.8
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 16 GANSMSSFGSNNH------SSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKH 69
GA + G N+ + S + N S + P C + C D
Sbjct: 99 GAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKCHDFQCALL 158
Query: 70 YGVYSCEGCKG------FFKRTVRKDLSYACREG 97
+++ EG G +RT + RE
Sbjct: 159 ANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRET 192
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium
tumefaciens STR. C58, structural genomics; 2.50A
{Agrobacterium tumefaciens str} SCOP: c.1.18.3
Length = 248
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 216 LLLRAGWNE-LLIASFSHRSI--------SVKDGILL--APGVTVYRSSAHEAGVGGIFD 264
L+ G SFS + + L A ++ + H + +
Sbjct: 120 LVRHLGMVRDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKSPSLVGAVHHASIIEITPA 179
Query: 265 RVLT-ELVSKMRE 276
++ ++ R+
Sbjct: 180 QMRRPGIIEASRK 192
>4efj_A I-gzemii, laglidadg endonuclease; DNA-cutting enzyme, hydrolase-DNA
complex; HET: DNA; 2.80A {Gibberella zeae}
Length = 300
Score = 27.1 bits (59), Expect = 9.7
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 9 LVNFNSGGANSMSSFGSNNHSSSHNNGSSNSSIISPYPPNHPLCGSKHL-----CSICGD 63
V+F G + + G+ + I P + + G K+ +
Sbjct: 210 FVDFFGCGGFNYHNKGNKAVIFVTRKFEDINDKIIPLFNEYKIKGVKYKDFKDWSKVAKM 269
Query: 64 RASGKHY 70
S H
Sbjct: 270 IESKSHL 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,089,149
Number of extensions: 300200
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 982
Number of HSP's successfully gapped: 106
Length of query: 347
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 253
Effective length of database: 4,077,219
Effective search space: 1031536407
Effective search space used: 1031536407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)