RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3092
(347 letters)
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 202 bits (515), Expect = 1e-64
Identities = 137/200 (68%), Positives = 157/200 (78%), Gaps = 6/200 (3%)
Query: 152 EMPVERILEAEQRVDMKQEP------ADQDIVNEQQATNICKATDKQLFQLVDWAKHIPH 205
+MPVERILEAE V+ K E TNIC+A DKQLF LV+WAK IPH
Sbjct: 1 DMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPH 60
Query: 206 FTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDR 265
F+ LPL+DQV+LLRAGWNELLIASFSHRSI+VKDGILLA G+ V+R+SAH AGVG IFDR
Sbjct: 61 FSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDR 120
Query: 266 VLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH 325
VLTELVSKMR+M+MDKTELGCLR I+LFNPD +GL + VE LREKVY SLE Y + +
Sbjct: 121 VLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKY 180
Query: 326 SEEPGRFAKLLLRLPSLRSI 345
E+PGRFAKLLLRLP+LRSI
Sbjct: 181 PEQPGRFAKLLLRLPALRSI 200
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 188 bits (479), Expect = 3e-59
Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 6/202 (2%)
Query: 150 LIEMP-VERILEAEQRVDMKQEPA---DQDIVNEQQAT--NICKATDKQLFQLVDWAKHI 203
L +P + +L+AE P + DI ++ A+ ++C++ +QL LV+WAK+I
Sbjct: 1 LASLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYI 60
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIF 263
P F LPL+DQV LLRA E L+ + RS+ KD +LL V R A + +
Sbjct: 61 PAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVS 120
Query: 264 DRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV 323
R+L ELV +E+++D E L+ II F+PD +GL ++ LR +V SLE+Y
Sbjct: 121 IRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYIND 180
Query: 324 NHSEEPGRFAKLLLRLPSLRSI 345
+ GRF +LLL LP+L+SI
Sbjct: 181 RQYDSRGRFGELLLLLPTLQSI 202
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 183 bits (466), Expect = 6e-57
Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 38/229 (16%)
Query: 155 VERILEAEQRVDMKQEP---------ADQDIVNEQQA--TNICKATDKQLFQLVDWAKHI 203
+ERI+EAEQR + + + + + + +C+ +KQLFQ+V++A+ +
Sbjct: 3 IERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMM 62
Query: 204 PHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDG----------------------- 240
PHF +PL+DQV+LL+A W ELLIA+ + SI D
Sbjct: 63 PHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGL 122
Query: 241 ----ILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD 296
+ L + +R+SA +AGV IFDR+L+EL KM+ + +D+ EL CL+ IIL+NPD
Sbjct: 123 QPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPD 182
Query: 297 VRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+RG+KS+ +EM REKVY L+E+ R+ H + GRFA+LLLRLP+LRSI
Sbjct: 183 IRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSI 231
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 182 bits (463), Expect = 2e-56
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 27/221 (12%)
Query: 152 EMPVERILEAEQRV-------DMKQEPADQDIVNEQQA--TNICKATDKQLFQLVDWAKH 202
E+ +ER+LE E V + D ++ + +A +++C+ +KQ+ LV WA+
Sbjct: 5 ELSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARD 64
Query: 203 IPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVK------------------DGILLA 244
IPHF+ L +EDQ+LL++ WNELL+ + + RS+ + L
Sbjct: 65 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLM 124
Query: 245 PGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQ 304
PG+T++R+SA +AGVG IFDRVL+EL KMR +++D+ E L+ IIL NPDV+GLK++Q
Sbjct: 125 PGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQ 184
Query: 305 VVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
VE+LREK++ L+EY R + S E GRFA LLLRLP+LRSI
Sbjct: 185 EVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSI 225
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 179 bits (455), Expect = 2e-55
Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 1/222 (0%)
Query: 124 KREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQEPADQDIVNEQQAT 183
K E EE + K V + + + L + + V+ + +
Sbjct: 1 KPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFS 60
Query: 184 NICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILL 243
+ K + ++VD+AK +P F LP EDQ++LL+ E++ + R + + L
Sbjct: 61 HFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL 120
Query: 244 APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQ 303
+ V R G+G + D + +L + +D TE+ L+ ++L + D GL
Sbjct: 121 NGEMAVTRGQLKNGGLGVVSDAIF-DLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACV 179
Query: 304 QVVEMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+ +E ++ + E Y + KLL+++ LR I
Sbjct: 180 ERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMI 221
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 175 bits (445), Expect = 5e-54
Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 152 EMPVERILEAEQRV------DMKQ---EPADQD----IVNEQQATNICKATDKQLFQLVD 198
E+ +++++ A+ + D + P D +Q+ + + + ++VD
Sbjct: 6 ELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVD 65
Query: 199 WAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAG 258
+AK +P F L EDQ+ LL+A E+++ + R + I T + H AG
Sbjct: 66 FAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAG 125
Query: 259 VGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLE 318
+ F + E MR + +D E L I +F+ D ++ VE L++ +L
Sbjct: 126 LQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALL 185
Query: 319 EYTRVNHSEEPGRFAKLLLRLPSLRSI 345
YTR+ ++ RF ++L++L SLR++
Sbjct: 186 SYTRIKRPQDQLRFPRMLMKLVSLRTL 212
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 174 bits (441), Expect = 2e-53
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 11/201 (5%)
Query: 155 VERILEAEQ----------RVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIP 204
+ ++ +A Q + + ++ + K + ++V++AK +P
Sbjct: 9 ITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLP 68
Query: 205 HFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFD 264
FT L + DQ+ LL+A ++L+ R +D + + G+T+ R+ H AG G + D
Sbjct: 69 GFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTD 128
Query: 265 RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVN 324
V ++ ++MD TE G L I L D L+ + V+ L+E + +L Y R
Sbjct: 129 LVF-AFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRR 187
Query: 325 HSEEPGRFAKLLLRLPSLRSI 345
+P F ++L+++ LR I
Sbjct: 188 RPSQPYMFPRMLMKITDLRGI 208
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 169 bits (430), Expect = 1e-51
Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 154 PVERILEAEQR-VDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLE 212
P E ++A+ +++ +CK D+ LF +V+WA+ F L ++
Sbjct: 15 PDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKVD 74
Query: 213 DQVLLLRAGWNELLIASFSHRSIS--VKDGILLAPGVTVYRSSAHEAGVGGIFD--RVLT 268
DQ+ LL+ W+ELLI +R ++ + I L G V S+ + +
Sbjct: 75 DQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQ 134
Query: 269 ELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE 328
ELV ++R ++ D+ E CL+ ++LF+ DV+ L++ Q+VE ++E+V +L +YT N+ ++
Sbjct: 135 ELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQ 194
Query: 329 PGRFAKLLLRLPSLRSI 345
+F +LLLRLP LR+I
Sbjct: 195 TEKFGQLLLRLPELRAI 211
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 169 bits (429), Expect = 1e-51
Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 8/195 (4%)
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQA----TNICKATDKQLFQLVDWAKHIPHFTTLP 210
+ I+++ + M QE ++ + E A + + + LV++ K +P F TL
Sbjct: 13 LHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLD 72
Query: 211 LEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTEL 270
EDQ+ LL+ E + RS + + L + + +G+ + +
Sbjct: 73 HEDQIALLKGSAVEAMF----LRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSF 128
Query: 271 VSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG 330
+ E+KM + E L I++ +PD + +K ++ VE L+E + L++ +++ E P
Sbjct: 129 YKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQ 188
Query: 331 RFAKLLLRLPSLRSI 345
FA LL RL LR+
Sbjct: 189 HFACLLGRLTELRTF 203
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 168 bits (426), Expect = 8e-51
Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 5/216 (2%)
Query: 135 TKERDSNEVESTSGTLIEMP---VERILEAEQRVDMKQ-EPADQDIVNEQQATNICKAT- 189
K + + + +E + AE+ + K Q+ E + + C+ T
Sbjct: 20 NKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTS 79
Query: 190 DKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTV 249
+ + +L ++AK IP F L L DQV LL+ G E + A S + G
Sbjct: 80 VETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFIT 139
Query: 250 YRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEML 309
+ K +++D +++ I+ D GL + +E +
Sbjct: 140 REFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKM 199
Query: 310 REKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
+E + L + + NH ++ F KLL ++ LR +
Sbjct: 200 QEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQL 235
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 165 bits (418), Expect = 7e-50
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 11/205 (5%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
+ V +L+AE + + + + D++L +++WAK +P F L L
Sbjct: 7 DQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTL 66
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQV LL W E+L+ RS+ +L AP + + R+ +L
Sbjct: 67 HDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATS 126
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVR--------GLKSQQVVEMLREKVYTSLEEYTR- 322
S+ R M + E CL++IIL N V L+ + + + +K+ +L
Sbjct: 127 SRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAK 186
Query: 323 --VNHSEEPGRFAKLLLRLPSLRSI 345
+ ++ R A+LLL L +R +
Sbjct: 187 AGLTLQQQHQRLAQLLLILSHIRHM 211
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 162 bits (412), Expect = 2e-49
Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 1/191 (0%)
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
V +L AE + + T +C D++L ++ WAKHIP F+TL L DQ
Sbjct: 5 VSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQ 64
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+ LL++ W E+LI +RS+S +D ++ A + + AG+ + + +L +LV K
Sbjct: 65 MSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAIL-QLVKKY 123
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
+ MK++K E L+ I L N D ++ + V+ L++ ++ +L++Y H E+P R K
Sbjct: 124 KSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGK 183
Query: 335 LLLRLPSLRSI 345
+L+ LP LR
Sbjct: 184 MLMTLPLLRQT 194
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 162 bits (412), Expect = 9e-49
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 10/219 (4%)
Query: 135 TKERDSNEVESTSGT---LIEMPVERILEAEQRVDMKQEPADQDIVNE---QQATNICKA 188
TK++ + + + + +E + +AE+ + KQ E
Sbjct: 19 TKKKARSILTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCT 78
Query: 189 TDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVT 248
T + + +L ++AK IP F++L L DQV LL+ G +E + A + SI KDG+L+A G
Sbjct: 79 TVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSG 136
Query: 249 VYRSSAHEAGVGGIFD--RVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVV 306
+ D E K +++D ++L I+ D GL + V
Sbjct: 137 FVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRV 196
Query: 307 EMLREKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
E +++ + +LE + + NH + F KLL ++ LR +
Sbjct: 197 EAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQL 235
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 161 bits (407), Expect = 2e-48
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 11/204 (5%)
Query: 152 EMPVERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPL 211
E V +LEAE + P+ ++ K DK+L ++ WAK IP F L L
Sbjct: 5 EQLVLTLLEAEPPNVLVSRPSMPFT-EASMMMSLTKLADKELVHMIGWAKKIPGFVELSL 63
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQV LL + W E+L+ RSI ++ AP + + R +L
Sbjct: 64 LDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATT 123
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYT---------- 321
S+ RE+K+ E C++ +IL N + L S K+ L T
Sbjct: 124 SRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEAESSRKLTHLLNAVTDALVWVIAKS 183
Query: 322 RVNHSEEPGRFAKLLLRLPSLRSI 345
++ ++ R A LL+ L +R I
Sbjct: 184 GISSQQQSVRLANLLMLLSHVRHI 207
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 158 bits (401), Expect = 1e-47
Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 5/195 (2%)
Query: 155 VERILEAEQRVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
V +L E + +C D+++ + WAK IP F++L L DQ
Sbjct: 5 VSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQ 64
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
+ +L++ W E+L+ + RS+ ++D + A + + A AG+G + L +LV ++
Sbjct: 65 MSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAA-LLQLVRRL 123
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNH----SEEPG 330
+ +++++ E L+ + L N D ++ + VE LRE ++ +L EY E
Sbjct: 124 QALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERR 183
Query: 331 RFAKLLLRLPSLRSI 345
R +LLL LP LR
Sbjct: 184 RAGRLLLTLPLLRQT 198
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 159 bits (402), Expect = 2e-47
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 3/165 (1%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T+ + Q++ + K +P F +LP+EDQ+ LL+ E+ + ++
Sbjct: 57 THFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTF-CLQTQNF 115
Query: 243 LAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKS 302
L + G F +L +R++++ + E L + LF+PD G+
Sbjct: 116 LCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQ 175
Query: 303 QQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKLLLRLPSLRSI 345
+ ++ L+E++ +L+ Y + + +AKLL L LRSI
Sbjct: 176 RDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSI 220
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 157 bits (399), Expect = 8e-47
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 3/194 (1%)
Query: 155 VERILEAEQRVDMKQEP--ADQDIVNEQQATNICKATDKQLFQ-LVDWAKHIPHFTTLPL 211
+ ++ E ++ K +Q + C+ + Q + ++AK IP F L L
Sbjct: 46 MNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDL 105
Query: 212 EDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELV 271
DQV LL+ G +E++ + I G G F E
Sbjct: 106 NDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFA 165
Query: 272 SKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR 331
K +++D ++L +I+ + D GL + + +E +++ + +LE ++NH E
Sbjct: 166 VKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQL 225
Query: 332 FAKLLLRLPSLRSI 345
FAKLL ++ LR I
Sbjct: 226 FAKLLQKMTDLRQI 239
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 156 bits (396), Expect = 1e-46
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 16/208 (7%)
Query: 152 EMPVERILEAEQRV------DMKQ--EPADQDIVNEQQAT---NICKATDKQLFQLVDWA 200
+ + R++ ++ D+K+ + D +E I + T + +V++A
Sbjct: 9 KSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFA 68
Query: 201 KHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVG 260
K +P F + DQ+ LL+A +E+++ + R + D +L A R + +AG+
Sbjct: 69 KGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMA 128
Query: 261 GIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEY 320
+ + +L M M MD L I++F+ D GL+ +VE ++ +L Y
Sbjct: 129 YVIEDLL-HFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVY 186
Query: 321 TRVNHSEEPG---RFAKLLLRLPSLRSI 345
+S P F K+L L +R++
Sbjct: 187 ILNQNSASPRCAVIFGKILGILTEIRTL 214
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 154 bits (390), Expect = 6e-46
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+ Q + + WA+ IP F LP DQ LL + + EL +
Sbjct: 28 NPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVL 87
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
++RS V+ ++ GV ++R G G D ++ E S ++ M +D + C+
Sbjct: 88 RLAYRSNPVEGKLIFCNGVVLHRLQCVR-GFGEWIDSIV-EFSSNLQNMNIDISAFSCIA 145
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHS--EEPGRFAKLLLRLPSLRSI 345
+ + GLK + VE L+ K+ L+++ N+ P +KLL +LP LR++
Sbjct: 146 ALAMVTER-HGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTL 203
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 154 bits (391), Expect = 2e-45
Identities = 45/239 (18%), Positives = 94/239 (39%), Gaps = 5/239 (2%)
Query: 110 CQYCRYQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEMPVERILEAEQRVDMKQ 169
+ ++ + E + + ++E + + ++ + V +
Sbjct: 26 SHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYK 85
Query: 170 EPADQDIVNEQQA-TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
PAD ++ + ++ +AK I +F LP+EDQ+ LL+ EL
Sbjct: 86 PPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQL 145
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
F+ + G Y G + + + ++++++ + E ++
Sbjct: 146 RFNTVF--NAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQ 203
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
I LF+PD G+ +VV+ L+E+ +L+ Y N + R F K++ L LRSI
Sbjct: 204 AISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSI 262
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 149 bits (377), Expect = 4e-44
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 169 QEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIA 228
+E + + QQ + + + +A+ IP + L EDQ LL ++ EL +
Sbjct: 28 EEQSMSEADKVQQFYQL---LTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVL 84
Query: 229 SFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLR 288
++R+ ++ G ++R+ G + ++ E + +++D + CL
Sbjct: 85 RLAYRARIDDTKLIFCNGTVLHRTQCLR-SFGEWLNDIM-EFSRSLHNLEIDISAFACLC 142
Query: 289 TIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPG--RFAKLLLRLPSLRSI 345
+ L GL+ + VE L+ K+ SL ++ N + F++LL +LP LRS+
Sbjct: 143 ALTLITER-HGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSL 200
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 149 bits (377), Expect = 1e-43
Identities = 37/185 (20%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 164 RVDMKQEPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWN 223
RV+ ++ ++ + +++ +AK IP F L EDQ++LL++
Sbjct: 41 RVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAI 100
Query: 224 ELLIASFSHRSISVKDGILLAPGVTVYRSS-AHEAGVGGIFDRVLTELVSKMREMKMDKT 282
E+++ + YR S +AG L + ++++ + +
Sbjct: 101 EVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE 160
Query: 283 ELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEE--PGRFAKLLLRLP 340
E L I + +PD G++ ++E +++++ +L+ Y R H +AK++ +L
Sbjct: 161 EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLA 220
Query: 341 SLRSI 345
LRS+
Sbjct: 221 DLRSL 225
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 148 bits (375), Expect = 2e-43
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
+++ + ++QL +V WAK +P F L ++DQ+ +++ W L++ + RS + + +
Sbjct: 34 SSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRM 93
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPD-VRG 299
L AP + H++ + R+ L + +++ E C++ ++LF+ V G
Sbjct: 94 LYFAPDLVFNEYRMHKSRMYSQCVRMR-HLSQEFGWLQITPQEFLCMKALLLFSIIPVDG 152
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEE---PGRFAKLLLRLPSLRSI 345
LK+Q+ + LR L+ RF +L L S++ I
Sbjct: 153 LKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPI 201
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 147 bits (373), Expect = 3e-43
Identities = 37/169 (21%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T++ + ++QL +V W+K +P F L ++DQ+ L++ W L++ RS G +
Sbjct: 35 TSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQM 94
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-G 299
L AP + + E+ + + + + ++++ + E C++ ++L N G
Sbjct: 95 LYFAPDLILNEQRMKESSFYSLCLTMWQ-IPQEFVKLQVSQEEFLCMKVLLLLNTIPLEG 153
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEP---GRFAKLLLRLPSLRSI 345
L+SQ E +R L + + RF +L L +L +
Sbjct: 154 LRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDL 202
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 147 bits (371), Expect = 4e-43
Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 155 VERILEAEQRV------DMKQ--EPADQDIVNEQQAT---------NICKATDKQLFQLV 197
V+ +L A R Q PA + + + + Q++
Sbjct: 11 VQILLGAHTRHVGPLFDQFVQFKPPAYLFMHHRPFQPRGPVLPLLTHFADINTFMVQQII 70
Query: 198 DWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEA 257
+ K +P F +L +EDQ+ LL+ E+L S + + P A A
Sbjct: 71 KFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPL-CYKMEDAVHA 129
Query: 258 GVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSL 317
G F + ++ + + + E + LF+PD G+ ++ ++ L+E++ L
Sbjct: 130 GFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALIL 189
Query: 318 EEYTRVNHSEEPGR--FAKLLLRLPSLRSI 345
+ S R +AKL+ L LRSI
Sbjct: 190 NNHIMEQQSRLQSRFLYAKLMGLLADLRSI 219
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 146 bits (369), Expect = 7e-43
Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 160 EAEQRVDMKQ----EPADQDIVNEQQATNICKATDKQLFQLVDWAKHIPHFTTLPLEDQV 215
+ ++D + + L + WA+ IP F L DQ
Sbjct: 15 PSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQD 74
Query: 216 LLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKMR 275
LLL + + EL I ++RS + ++ G+ ++R G G D +L +
Sbjct: 75 LLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA-RGFGDWIDSIL-AFSRSLH 132
Query: 276 EMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRV--NHSEEPGRFA 333
+ +D CL ++L GL+ + VE L+ ++ + L+E+ + +
Sbjct: 133 SLLVDVPAFACLSALVLITDR-HGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLS 191
Query: 334 KLLLRLPSLRSI 345
+LL +LP LR++
Sbjct: 192 RLLGKLPELRTL 203
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 141 bits (355), Expect = 1e-40
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
Query: 183 TNICKATDKQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGIL 242
T + +Q+ V WAK IP F L L+DQ+ LL+ W L+ + RS L
Sbjct: 32 TTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANL 91
Query: 243 L--APGVTVYRSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVR-G 299
L AP + + + +L + S++ +++ E C++T++L + + G
Sbjct: 92 LCFAPDLIINEQRMTLPDMYDQCKHML-YVSSELHRLQVSYEEYLCMKTLLLLSSVPKDG 150
Query: 300 LKSQQVVEMLREKVYTSLEEYTRVNHSEEPG---RFAKLLLRLPSLRSI 345
LKSQ++ + +R L + RF +L L S+ +
Sbjct: 151 LKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEV 199
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 139 bits (350), Expect = 7e-40
Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 10/191 (5%)
Query: 162 EQRVDMKQEPADQDIVNEQQATN-------ICKATDKQLFQLVDWAKHIPHFTTLPLEDQ 214
E+ + + Q+ + Q + + +V++AK I F L DQ
Sbjct: 33 EELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQ 92
Query: 215 VLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVYRSSAHEAGVGGIFDRVLTELVSKM 274
++LL+AG E++ R+ ++ + G G V E +
Sbjct: 93 IVLLKAGSLEVVFIRMC-RAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVF-EFGKSL 150
Query: 275 REMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLREKVYTSLEEYTRVNHSEEPGRFAK 334
M + + E+ +L + D L+ + +E L++K+ +L+ + NH E G K
Sbjct: 151 CSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTK 209
Query: 335 LLLRLPSLRSI 345
L+ ++ +LR++
Sbjct: 210 LICKVSTLRAL 220
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 132 bits (333), Expect = 2e-39
Identities = 69/81 (85%), Positives = 78/81 (96%)
Query: 54 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYC 113
+KH+C+ICGDR+SGKHYGVYSCEGCKGFFKRTVRKDL+Y CR+ ++C+IDKRQRNRCQYC
Sbjct: 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
Query: 114 RYQKCLNMGMKREAVQEERQR 134
RYQKCL MGMKREAVQEERQR
Sbjct: 64 RYQKCLAMGMKREAVQEERQR 84
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 135 bits (341), Expect = 1e-38
Identities = 38/215 (17%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 149 TLIEMP--VERILEA---------EQRVDMKQEPADQDIVNEQQATN-------ICKATD 190
T+ E+ + I+++ E+ + + + + Q+ +
Sbjct: 1 TMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQIT 60
Query: 191 KQLFQLVDWAKHIPHFTTLPLEDQVLLLRAGWNELLIASFSHRSISVKDGILLAPGVTVY 250
+ +V++AK I F L DQ+LLL++G E+++ + +L G
Sbjct: 61 HAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNP-LNNTVLFEGKYGG 119
Query: 251 RSSAHEAGVGGIFDRVLTELVSKMREMKMDKTELGCLRTIILFNPDVRGLKSQQVVEMLR 310
G + + + + +++ + E+ + +L +PD L + V+ L+
Sbjct: 120 MQMFKALGSDDLVNEAF-DFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQ 178
Query: 311 EKVYTSLEEYTRVNHSEEPGRFAKLLLRLPSLRSI 345
EK+Y +L+ + NH + AKL+ ++P++ ++
Sbjct: 179 EKIYFALQHVIQKNHL-DDETLAKLIAKIPTITAV 212
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 123 bits (310), Expect = 5e-36
Identities = 43/82 (52%), Positives = 54/82 (65%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
LC +CGDRASG HY +CEGCKGFF+R+V K Y C+ GR C +D R +CQ CR +
Sbjct: 2 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 61
Query: 117 KCLNMGMKREAVQEERQRTKER 138
KCL +GM+ E V E Q +R
Sbjct: 62 KCLAVGMRPECVVPENQCAMKR 83
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 121 bits (305), Expect = 3e-35
Identities = 31/83 (37%), Positives = 55/83 (66%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQ 116
+C +CGDRA+G H+ +CEGCKGFF+R++++ + C +C I K R CQ CR +
Sbjct: 2 ICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLK 61
Query: 117 KCLNMGMKREAVQEERQRTKERD 139
+C+++GM +E + + + ++R+
Sbjct: 62 RCVDIGMMKEFILTDEEVQRKRE 84
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 119 bits (300), Expect = 2e-34
Identities = 42/84 (50%), Positives = 55/84 (65%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
K LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y+C C I KR+R CQ CR
Sbjct: 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 63
Query: 115 YQKCLNMGMKREAVQEERQRTKER 138
+ K L +GM +E V+ +R R +
Sbjct: 64 FMKALKVGMLKEGVRLDRVRGGRQ 87
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 116 bits (292), Expect = 3e-33
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C++CGD AS +HYGV +CEGCKGFFKRTV+K Y C ++C +DKR+RNRCQ+CR+QK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 118 CLNMGMKREAVQEERQRTKER 138
CL +GM +E V+ + + +
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRG 83
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 115 bits (290), Expect = 4e-33
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY-ACREGRNCIIDKRQRNRCQYCRY 115
LC +CGD ASG HYGV +CEGCKGFF+R++++++ Y C + NC I + RNRCQ CR+
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 61
Query: 116 QKCLNMGMKREAVQEER 132
+KCL++GM R+AV+ R
Sbjct: 62 KKCLSVGMSRDAVRFGR 78
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 114 bits (286), Expect = 1e-32
Identities = 41/74 (55%), Positives = 58/74 (78%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D++SG HYGV +CEGCKGFF+R+++K++ Y C +NCII+K RNRCQYCR QK
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 61
Query: 118 CLNMGMKREAVQEE 131
C +GM +E+V+ +
Sbjct: 62 CFEVGMSKESVRND 75
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 108 bits (270), Expect = 3e-30
Identities = 33/73 (45%), Positives = 38/73 (52%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
+ C ICGD ASG HYG +C CK FFKR Y C +C IDK +R C CR
Sbjct: 2 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCR 61
Query: 115 YQKCLNMGMKREA 127
+KC GM A
Sbjct: 62 LRKCYEAGMTLGA 74
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 106 bits (265), Expect = 1e-29
Identities = 35/71 (49%), Positives = 45/71 (63%)
Query: 55 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCR 114
C++C D ASG HYGV+SCEGCK FFKR+++ Y C C IDK +R CQ CR
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 63
Query: 115 YQKCLNMGMKR 125
+KC +GM +
Sbjct: 64 LRKCYEVGMMK 74
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 102 bits (255), Expect = 5e-28
Identities = 38/69 (55%), Positives = 44/69 (63%)
Query: 58 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREGRNCIIDKRQRNRCQYCRYQK 117
C +C D ASG HYGV +CEGCK FFKR V +Y C+ CIIDK +R C CRY+K
Sbjct: 3 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 62
Query: 118 CLNMGMKRE 126
CL GM E
Sbjct: 63 CLQAGMNLE 71
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 99.9 bits (248), Expect = 8e-27
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 57 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA--CREGRNCIIDKRQRNRCQYCR 114
LC +CGD+A+G HY +CEGCKGFF+RT++K+L + C+ C+IDK RN+CQ CR
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 62
Query: 115 YQKCLNMGMKREAVQEERQRTKERDSNEVESTSGTLIEM 153
++KC+ +GM + V ++ +R +R E E+
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREEL 101
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 27.6 bits (61), Expect = 2.1
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 50 PLCGSK---HLCSICGDRASG--KHYGVYSCEGCKGFFK 83
C S+ D +C C+G+ K
Sbjct: 208 SHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 246
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 26.0 bits (57), Expect = 2.2
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 41 IISPYPPNHPLC---GSKHLCSICGDRASGKHYGVYSCE 76
+ H L + C C + + Y C+
Sbjct: 30 VKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 68
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
[TaxId: 70863]}
Length = 442
Score = 27.6 bits (60), Expect = 2.3
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 28 HSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKHYGVYSCEGC 78
H++ + S N+ +SP +H C + H + ++ H +C+ C
Sbjct: 185 HTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKKLNTHTATVACQTC 235
>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x
(pbp-2x), c-terminal domain {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 61
Score = 24.9 bits (54), Expect = 3.6
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 295 PDVRGLKSQQVVEMLRE---KVYTSLEEYTRVNHSEEPGRFAK 334
P V+ + + E LR + N S E G+
Sbjct: 8 PSVKDISPGDLAEELRRNLVQPIVVGTGTKIKNSSAEEGKNLA 50
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 27.0 bits (60), Expect = 3.8
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 16 GANSMSSFGSNN------HSSSHNNGSSNSSIISPYPPNHPLCGSKHLCSICGDRASGKH 69
GA + G N+ + S + N S + P C + C D
Sbjct: 96 GAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGCLLEKYSEKCHDFQCALL 155
Query: 70 YGVYSCEGCKG------FFKRTVRKDLSYACREG 97
+++ EG G +RT + RE
Sbjct: 156 ANLFASEGQPGKVIEVKAKRRTGPLNFVTCMRET 189
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,236,721
Number of extensions: 57685
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 52
Length of query: 347
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,226,816
Effective search space: 320198976
Effective search space used: 320198976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)