BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3095
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PSW|A Chain A, Structure Of E. Coli Adp-Heptose Lps Heptosyltransferase
           Ii
          Length = 348

 Score = 28.9 bits (63), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 47  ITAGNGIVATNPSQVNTENRGLSWSVGKNFGPARRRPANHY---QVELISHTCQVYLI 101
           ++ G      N   +++E   + +  G  FGPA+R P  HY     +LI    QV L 
Sbjct: 162 VSEGEKSYTCNQFSLSSERPXIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLF 219


>pdb|2XWG|A Chain A, Crystal Structure Of Sortase C-1 From Actinomyces Oris
           (Formerly Actinomyces Naeslundii)
 pdb|2XWG|B Chain B, Crystal Structure Of Sortase C-1 From Actinomyces Oris
           (Formerly Actinomyces Naeslundii)
 pdb|2XWG|C Chain C, Crystal Structure Of Sortase C-1 From Actinomyces Oris
           (Formerly Actinomyces Naeslundii)
 pdb|2XWG|D Chain D, Crystal Structure Of Sortase C-1 From Actinomyces Oris
           (Formerly Actinomyces Naeslundii)
 pdb|2XWG|E Chain E, Crystal Structure Of Sortase C-1 From Actinomyces Oris
           (Formerly Actinomyces Naeslundii)
          Length = 235

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 27  NNVNQLRPGDIDIVGAIGDSITAG-NGIVATNPSQVNT 63
           +N+NQL+ GD+  V ++G ++    N I    P + ++
Sbjct: 161 DNLNQLKKGDVFYVSSLGQTLKYEVNDITVVKPEETDS 198


>pdb|3GWB|A Chain A, Crystal Structure Of Peptidase M16 Inactive Domain From
           Pseudomonas Fluorescens. Northeast Structural Genomics
           Target Plr293l
 pdb|3GWB|B Chain B, Crystal Structure Of Peptidase M16 Inactive Domain From
           Pseudomonas Fluorescens. Northeast Structural Genomics
           Target Plr293l
          Length = 434

 Score = 25.8 bits (55), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 42  AIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFGPARRR 82
           ++G+ I  G G      S+V  E RGL++ V   F P + R
Sbjct: 270 SLGNQILGGGGFGTRLXSEVR-EKRGLTYGVYSGFTPXQAR 309


>pdb|1BWD|A Chain A, Inosamine-Phosphate Amidinotransferase Strb1 From
           Streptomyces Griseus
 pdb|1BWD|B Chain B, Inosamine-Phosphate Amidinotransferase Strb1 From
           Streptomyces Griseus
          Length = 348

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 52  GIVATNPSQVNTEN 65
           G+V TNPS+VN EN
Sbjct: 238 GLVLTNPSRVNDEN 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,562,360
Number of Sequences: 62578
Number of extensions: 136003
Number of successful extensions: 224
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 5
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)