RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3095
         (106 letters)



>gnl|CDD|238862 cd01824, Phospholipase_B_like, Phospholipase-B_like. This
          subgroup of the SGNH-family of lipolytic enzymes may
          have both esterase and
          phospholipase-A/lysophospholipase activity.  It's
          members may be involved in the conversion of
          phosphatidylcholine to fatty acids and
          glycerophosphocholine, perhaps in the context of
          dietary lipid uptake. Members may be membrane proteins.
          The tertiary fold of the SGNH-hydrolases is
          substantially different from that of the alpha/beta
          hydrolase family and unique among all known hydrolases;
          Its active site closely resembles two of the three
          components of typical Ser-His-Asp(Glu) triad from other
          serine hydrolases.
          Length = 288

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 28 NVNQLRPGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWSVG 73
          +V++LRPGDI ++ A+GDS+TAGNG  + N   + TE RGLSWS+G
Sbjct: 1  SVHRLRPGDIKVIAALGDSLTAGNGAGSANNLDLLTEYRGLSWSIG 46


>gnl|CDD|222050 pfam13332, Fil_haemagg_2, Haemagluttinin repeat. 
          Length = 170

 Score = 29.1 bits (66), Expect = 0.29
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 14/54 (25%)

Query: 35 GDIDIVGAIGDSITAGNGIV-----------ATNPSQVNTENRGLSWSVGKNFG 77
          GDI + G+    I AGN ++           A N    ++ N+    SVG + G
Sbjct: 35 GDITVQGS---QIKAGNDVILNAANDINLEAAQNTQSTSSTNKSSGGSVGVSVG 85


>gnl|CDD|238869 cd01831, Endoglucanase_E_like, Endoglucanase E-like members of
          the SGNH hydrolase family; Endoglucanase E catalyzes
          the endohydrolysis of 1,4-beta-glucosidic linkages in
          cellulose, lichenin and cereal beta-D-glucans.
          Length = 169

 Score = 27.7 bits (62), Expect = 1.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 43 IGDSITAGNGIVATNPSQVN--TENRGLSWS 71
          IGDSIT G G+   +    +  TE+  LS++
Sbjct: 5  IGDSITCGYGVTGKSRCDFSAATEDPSLSYA 35


>gnl|CDD|238141 cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a
          diverse family of lipases and esterases. The tertiary
          fold of the enzyme is substantially different from that
          of the alpha/beta hydrolase family and unique among all
          known hydrolases; its active site closely resembles the
          typical Ser-His-Asp(Glu) triad from other serine
          hydrolases, but may lack the carboxlic acid.
          Length = 187

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 40 VGAIGDSITAGNG 52
          +  IGDSITAG G
Sbjct: 1  ILVIGDSITAGYG 13


>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
           This model represents mitochondrial forms of the TCA
           cycle enzyme aconitate hydratase, also known as
           aconitase and citrate hydro-lyase [Energy metabolism,
           TCA cycle].
          Length = 745

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 4   KVQPHYEGPFPCDLSQARSPLPPNNVNQLRPGDIDIVGAIG 44
           K++PH  GPF  DLS   S           P  +   G IG
Sbjct: 310 KLEPHINGPFTPDLSTPISKFKETVQKNGWPEKLS-AGLIG 349


>gnl|CDD|233774 TIGR02195, heptsyl_trn_II, lipopolysaccharide heptosyltransferase
           II.  This family consists of examples of ADP-heptose:LPS
           heptosyltransferase II, an enzyme of LPS inner core
           region biosynthesis. LPS, composed of lipid A, a core
           region, and O antigen, is found in the outer membrane of
           Gram-negative bacteria [Cell envelope, Biosynthesis and
           degradation of surface polysaccharides and
           lipopolysaccharides].
          Length = 334

 Score = 27.3 bits (61), Expect = 1.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 73  GKNFGPARRRPANHY 87
           G  FGPA+R P  HY
Sbjct: 182 GAEFGPAKRWPHEHY 196


>gnl|CDD|238866 cd01828, sialate_O-acetylesterase_like2,
          sialate_O-acetylesterase_like subfamily of the
          SGNH-hydrolases, a diverse family of lipases and
          esterases. The tertiary fold of the enzyme is
          substantially different from that of the alpha/beta
          hydrolase family and unique among all known hydrolases;
          its active site closely resembles the Ser-His-Asp(Glu)
          triad found in other serine hydrolases.
          Length = 169

 Score = 26.9 bits (60), Expect = 1.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 43 IGDSITAGNGIVATNPSQVNTENRGLS 69
          +GDS+T G    A     V   NRG+S
Sbjct: 5  LGDSLTEGGP-WALLFPDVKVANRGIS 30


>gnl|CDD|227048 COG4704, COG4704, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 151

 Score = 26.8 bits (59), Expect = 2.1
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 30  NQLRPGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFGP 78
             L+PG    V A  D    G+G + TNP  +  E  G S +     GP
Sbjct: 82  YGLKPGKY-AVAAFQD--ENGDGKLDTNPFGIPKEPFGFSRNASIRTGP 127


>gnl|CDD|238868 cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the
          putative arylesterase/acylhydrolase from the rumen
          anaerobe Prevotella bryantii XynE. The P. bryantii XynE
          gene is located in a xylanase gene cluster. SGNH
          hydrolases are a diverse family of lipases and
          esterases. The tertiary fold of the enzyme is
          substantially different from that of the alpha/beta
          hydrolase family and unique among all known hydrolases;
          its active site closely resembles the Ser-His-Asp(Glu)
          triad found in other serine hydrolases.
          Length = 204

 Score = 26.4 bits (59), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 6/27 (22%)

Query: 40 VGAIGDSITAGNGIVATNPSQVNTENR 66
          V A+GDSIT G G      S  +  NR
Sbjct: 2  VVALGDSITDGRG------STPDANNR 22


>gnl|CDD|216048 pfam00657, Lipase_GDSL, GDSL-like Lipase/Acylhydrolase. 
          Length = 219

 Score = 26.5 bits (58), Expect = 2.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 40 VGAIGDSITAGNGI 53
          + A GDS+T G G 
Sbjct: 1  IVAFGDSLTDGYGD 14


>gnl|CDD|238861 cd01823, SEST_like, SEST_like. A family of secreted
          SGNH-hydrolases similar to Streptomyces scabies
          esterase (SEST), a causal agent of the potato scab
          disease, which hydrolyzes a specific ester bond in
          suberin, a plant lipid. The tertiary fold of this
          enzyme is substantially different from that of the
          alpha/beta hydrolase family and unique among all known
          hydrolases; its active site closely resembles two of
          the three components of typical Ser-His-Asp(Glu) triad
          from other serine hydrolases, but may lack the
          carboxylic acid.
          Length = 259

 Score = 26.6 bits (59), Expect = 2.8
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)

Query: 42 AIGDSITAGNGIVATNPSQVNTENRG 67
          A+GDS  AG G         +  + G
Sbjct: 5  ALGDSYAAGPGA----GPLDDGPDDG 26


>gnl|CDD|182835 PRK10916, PRK10916, ADP-heptose:LPS heptosyltransferase II;
           Provisional.
          Length = 348

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 73  GKNFGPARRRPANHYQV---ELISHTCQVYL 100
           G  FGPA+R P  HY     +LI    QV L
Sbjct: 188 GAEFGPAKRWPHYHYAELAQQLIDEGYQVVL 218


>gnl|CDD|222156 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. 
          This family of presumed lipases and related enzymes are
          similar to pfam00657.
          Length = 174

 Score = 25.9 bits (57), Expect = 3.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 42 AIGDSITAGNG 52
           +GDSITAG G
Sbjct: 2  FLGDSITAGLG 12


>gnl|CDD|107186 PHA02448, PHA02448, hypothetical protein.
          Length = 192

 Score = 25.8 bits (56), Expect = 5.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 6  QPHYEGPFPCDLSQARSPLPPNNVNQLRPGDIDI 39
          +P  EG     L++ R P PPN + +L  G I +
Sbjct: 3  EPDVEG-----LAKLREPFPPNQIGKLPKGGITL 31


>gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase
           2/2-methylisocitrate dehydratase; Validated.
          Length = 835

 Score = 25.5 bits (57), Expect = 7.6
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 21/45 (46%)

Query: 32  LRPGD--I----------DIVGAIGDSIT---------AGNGIVA 55
           LRPGD  I          D VG  GDS T         AG+G+VA
Sbjct: 461 LRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVA 505


>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
           isomerization of citrate and isocitrate as part of the
           TCA cycle.  Mitochondrial aconitase A catalytic domain.
           Aconitase (also known as aconitate hydratase and citrate
           hydro-lyase) catalyzes the reversible isomerization of
           citrate and isocitrate as part of the TCA cycle.
           Cis-aconitate is formed as an intermediary product
           during the course of the reaction. In eukaryotes two
           isozymes of aconitase are known to exist: one found in
           the mitochondrial matrix and the other found in the
           cytoplasm. This is the mitochondrial form. The
           mitochondrial product is coded by a nuclear gene. Most
           members of this subfamily are mitochondrial but there
           are some bacterial members.
          Length = 412

 Score = 25.5 bits (56), Expect = 7.6
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 4   KVQPHYEGPFPCDLSQARSPLPPNNVNQLRPGDIDIVGAIG 44
           +++PH  GPF  DL+   S           P D+  VG IG
Sbjct: 251 ELEPHINGPFTPDLATPVSKFKEVAEKNGWPLDLR-VGLIG 290


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,351,791
Number of extensions: 437207
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 20
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)