RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3095
(106 letters)
>2hsj_A Putative platelet activating factor; structr genomics, structural
genomics, PSI-2; HET: MSE; 1.50A {Streptococcus
pneumoniae} SCOP: c.23.10.3
Length = 214
Score = 32.8 bits (75), Expect = 0.009
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 27 NNVNQLRPGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWS 71
++N + + +I+ IGDSI + + NRG+
Sbjct: 25 RHLNHISVVEPNIL-FIGDSIVEYYPLQELFGTSKTIVNRGIRGY 68
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo
structural genomics, joint center for structural
genomics; HET: MSE PG4; 1.93A {Parabacteroides
distasonis}
Length = 204
Score = 32.5 bits (74), Expect = 0.012
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 30 NQLRPGDIDIVGAIGDSITAGNG-IVATNPSQVNTENRGLSWS 71
N+ ++V +G+SIT G +T + N +RG+S
Sbjct: 16 NKTVKVPSNVV-FMGNSITDGWWPADSTFFIRNNFVDRGISGQ 57
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY
LP_3323, structural genomics, PSI-2, prote structure
initiative; 2.12A {Lactobacillus plantarum} SCOP:
c.23.10.9
Length = 232
Score = 30.6 bits (69), Expect = 0.056
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 40 VGAIGDSITAGNGI--------VATNPSQVNTENRGLS 69
+GDSITA NG+ +A + ++N G+S
Sbjct: 24 PAWLGDSITANNGLATVHYHDILAADWDVERSDNLGIS 61
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate
esterase family 2, hydrolase; 2.00A {Cellvibrio
japonicus}
Length = 366
Score = 30.1 bits (67), Expect = 0.098
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 43 IGDSITAGNGIVATN-----PSQVNTENRGLSWS--VGKNFG 77
IGDS T G G + + T N +++ K F
Sbjct: 148 IGDSFTVGYGNTSPSRECTDEELFKTTNSQMAFGPLTAKAFD 189
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II),
NYSGXRC, structural genomics; 1.87A {Bacteroides
thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Length = 274
Score = 29.8 bits (66), Expect = 0.11
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 40 VGAIGDSITAGNGI 53
VG IGDSIT N
Sbjct: 29 VGYIGDSITDPNCY 42
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics
center for structural genomics, JCSG, protein structure
INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6
PDB: 1z8h_A
Length = 218
Score = 28.3 bits (63), Expect = 0.38
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 27 NNVNQLRPGDIDIVGAIGDSITAGNG 52
+++ + I I +GDS G G
Sbjct: 11 HHMTKQSKTQIRIC-FVGDSFVNGTG 35
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium
thermocellum}
Length = 215
Score = 26.8 bits (59), Expect = 1.2
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 42 AIGDSITAGNGIVATN 57
+GDS T G G
Sbjct: 10 PVGDSCTEGMGGGEMG 25
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for
structural genomics, MCSG, H; 1.50A {Alicyclobacillus
acidocaldarius subsp}
Length = 216
Score = 26.8 bits (59), Expect = 1.4
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 31 QLRPGDIDIVGAIGDSITAGNGIVATNPSQVNTENRGLSWSVGKNFGPARRRPANHYQV 89
+ PG +V +GDSIT + G V + P +V
Sbjct: 4 MIEPGS-KLV-MVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQ--VLHPDWRIRV 58
>1w18_A Levansucrase; transferase, fructosyl transferase,
glycosyltransferase; 2.5A {Gluconacetobacter
diazotrophicus}
Length = 493
Score = 26.4 bits (57), Expect = 1.8
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 35 GDIDIVGAIGDSIT-------AGNGIVATNPSQVNTENRGLSWSVGKNFGPARRRPANHY 87
G + G +GD I G+G+ NP+ +NT + P + +HY
Sbjct: 368 GPDGVYGFVGDGIRSDFQPMNYGSGLTMGNPTDLNTAAGTDFD-PSPDQNPRAFQSYSHY 426
Query: 88 QV 89
+
Sbjct: 427 VM 428
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli}
SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 25.6 bits (56), Expect = 3.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 42 AIGDSITAGNGI 53
+GDS++AG +
Sbjct: 6 ILGDSLSAGYRM 17
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB:
1esd_A 1ese_A
Length = 306
Score = 25.8 bits (55), Expect = 3.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 42 AIGDSITAGNGI 53
GDS TA GI
Sbjct: 10 FFGDSYTANFGI 21
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma
subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus}
SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A
3dt9_A* 3dt6_A* 3dt8_A*
Length = 232
Score = 25.4 bits (55), Expect = 4.6
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 29 VNQLRPGDIDIVGAIGDSITAGNGIVATNP---SQVNTENRGLSWS 71
V + + ++V IGDS+ S ++ N G+
Sbjct: 31 VADSKDKEPEVV-FIGDSLVQLMHQCEIWRELFSPLHALNFGIGGD 75
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Length = 195
Score = 25.0 bits (55), Expect = 4.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 42 AIGDSITAGNGIVATNPSQVNTENRGL 68
GDSITAG A +P V+ R +
Sbjct: 6 LFGDSITAGYLDEAVSPVLVDLVKRDI 32
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate
metabolism, polysaccharide degradation, esterase,
hydrolase, cellulases; HET: BGC; 1.80A {Clostridium
thermocellum} PDB: 2wab_A*
Length = 341
Score = 24.8 bits (53), Expect = 6.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 40 VGAIGDSITAGNGIVATNPS---QVNTENRGLSW 70
+ IGDSIT G T+ EN +S+
Sbjct: 125 IEFIGDSITCAYGNEGTSKEQSFTPKNENSYMSY 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.427
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,632,263
Number of extensions: 84117
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 17
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)